From b5c7bb1b2addbc9a6fa81e5e8f4fea40f053aa81 Mon Sep 17 00:00:00 2001
From: Erlend Kristiansen <erlenkr@ifi.uio.no>
Date: Sun, 9 Feb 2014 15:05:31 +0100
Subject: [PATCH] Thesis: adding citing command that uses cite command

---
 thesis/master-thesis-erlenkr.pdf | Bin 5405492 -> 5405513 bytes
 thesis/master-thesis-erlenkr.tex |  96 +++++++++++++++++--------------
 2 files changed, 52 insertions(+), 44 deletions(-)

diff --git a/thesis/master-thesis-erlenkr.pdf b/thesis/master-thesis-erlenkr.pdf
index 6916a0885510cdeea565d1b429f3bd069cef6353..7db2dcb0ef8e7d1d5b8ee7e3b0db23a160149d9f 100644
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diff --git a/thesis/master-thesis-erlenkr.tex b/thesis/master-thesis-erlenkr.tex
index 217c5648..fb6c197a 100644
--- a/thesis/master-thesis-erlenkr.tex
+++ b/thesis/master-thesis-erlenkr.tex
@@ -31,6 +31,13 @@
 \newcommand{\methodwithref}[2]{\method{#2}\footnote{\type{#1}\method{\##2()}}}
 \newcommand{\var}[1]{\type{#1}}
 
+\newcommand{\refactoring}[1]{\emph{#1}}
+\newcommand{\refactoringsp}[1]{\refactoring{#1} }
+\newcommand{\ExtractMethod}{\refactoringsp{Extract Method}}
+\newcommand{\MoveMethod}{\refactoringsp{Move Method}}
+
+\newcommand{\citing}[1]{~\cite{#1}}
+
 
 \title{Refactoring}
 \subtitle{An unfinished essay}
@@ -74,7 +81,8 @@ refactoring like this:
   \emph{Refactoring} (noun): a change made to the \todo{what does he mean by 
   internal?} internal structure of software to make it easier to understand and 
   cheaper to modify without changing its observable 
-  behavior.~\cite{refactoring} % page 53
+  behavior.\citing{refactoring} 
+  % page 53
 \end{quote}
 
 \noindent This definition assign additional meaning to the word 
@@ -114,7 +122,7 @@ considered refactorings.
 Finally, to \emph{refactor} is (quoting Martin Fowler)
 \begin{quote}
   \ldots to restructure software by applying a series of refactorings without 
-  changing its observable behavior.~\cite{refactoring} % page 54, definition
+  changing its observable behavior.\citing{refactoring} % page 54, definition
 \end{quote}
 
 \section{The etymology of 'refactoring'}
@@ -123,7 +131,7 @@ It is a little difficult to pinpoint the exact origin of the word
 terminology, more than a scientific term. There is no authoritative source for a 
 formal definition of it. 
 
-According to Martin Fowler~\cite{etymology-refactoring}, there may also be more 
+According to Martin Fowler\citing{etymology-refactoring}, there may also be more 
 than one origin of the word. The most well-known source, when it comes to the 
 origin of \emph{refactoring}, is the Smalltalk\footnote{\emph{Smalltalk}, 
 object-oriented, dynamically typed, reflective programming language.}\todo{find 
@@ -131,12 +139,12 @@ reference to Smalltalk website or similar?} community and their infamous
 \emph{Refactoring 
 Browser}\footnote{\url{http://st-www.cs.illinois.edu/users/brant/Refactory/RefactoringBrowser.html}} 
 described in the article \emph{A Refactoring Tool for 
-Smalltalk}~\cite{refactoringBrowser1997}, published in 1997.  
-Allegedly~\cite{etymology-refactoring}, the metaphor of factoring programs was 
+Smalltalk}\citing{refactoringBrowser1997}, published in 1997.  
+Allegedly\citing{etymology-refactoring}, the metaphor of factoring programs was 
 also present in the Forth\footnote{\emph{Forth} -- stack-based, extensible 
 programming language, without type-checking. See \url{http://www.forth.org}} 
 community, and the word ``refactoring'' is mentioned in a book by Leo Brodie, 
-called \emph{Thinking Forth}~\cite{brodie1984}, first published in 
+called \emph{Thinking Forth}\citing{brodie1984}, first published in 
 1984\footnote{\emph{Thinking Forth} was first published in 1984 by the 
 \emph{Forth Interest Group}.  Then it was reprinted in 1994 with minor 
 typographical corrections, before it was transcribed into an electronic edition 
@@ -149,7 +157,7 @@ maintainable.
 
 \begin{quote}
   \ldots good factoring technique is perhaps the most important skill for a 
-  Forth programmer.~\cite{brodie1984}
+  Forth programmer.\citing{brodie1984}
 \end{quote}
 
 \noindent Brodie also express what \emph{factoring} means to him:
@@ -158,7 +166,7 @@ maintainable.
   Factoring means organizing code into useful fragments. To make a fragment 
   useful, you often must separate reusable parts from non-reusable parts. The  
   reusable parts become new definitions. The non-reusable parts become arguments 
-  or parameters to the definitions.~\cite{brodie1984}
+  or parameters to the definitions.\citing{brodie1984}
 \end{quote}
 
 Fowler claims that the usage of the word \emph{refactoring} did not pass between 
@@ -171,7 +179,7 @@ independently in each of the communities.
 To get a grasp of what refactoring is all about, we can try to answer this 
 question: \emph{Why do people refactor?} Possible answers could include: ``To 
 remove duplication'' or ``to break up long methods''.  Practitioners of the art 
-of Design Patterns~\cite{dp} could say that they do it to introduce a 
+of Design Patterns\citing{dp} could say that they do it to introduce a 
 long-needed pattern into their program's design.  So it is safe to say that 
 peoples' intentions are to make their programs \emph{better} in some sense. But 
 what aspects of the programs are becoming improved?
@@ -188,8 +196,8 @@ remember.
 
 The same people find out that their program contains a lot of long and 
 hard-to-grasp methods. Then what do they do? They begin dividing their methods 
-into smaller ones, using the \emph{Extract Method} 
-refactoring~\cite{refactoring}.  Then they may discover something about their 
+into smaller ones, using the \ExtractMethod 
+refactoring\citing{refactoring}.  Then they may discover something about their 
 program that they weren't aware of before; revealing bugs they didn't know about 
 or couldn't find due to the complex structure of their program. \todo{Proof?} 
 Making the methods smaller and giving good names to the new ones clarifies the 
@@ -240,7 +248,7 @@ seldom see beyond the next milestone.
 
 \section{The magical number seven}\label{magic_number_seven}
 \emph{The magical number seven, plus or minus two: some limits on our capacity 
-for processing information}~\cite{miller1956} is an article by George A. Miller 
+for processing information}\citing{miller1956} is an article by George A. Miller 
 that was published in the journal \emph{Psychological Review} in 1956. It 
 presents evidence that support that the capacity of the number of objects a 
 human being can hold in its working memory is roughly seven, plus or minus two 
@@ -257,18 +265,18 @@ remembered by. By organizing objects into patterns of ever growing depth, one
 can memorize and process a much larger amount of data than if it were to be 
 represented as its basic pieces. This grouping and renaming is analogous to how 
 many refactorings work, by grouping pieces of code and give them a new name.  
-Examples are the central \emph{Extract Method} and \emph{Extract Class} 
-refactorings~\cite{refactoring}.
+Examples are the central \ExtractMethod and \refactoring{Extract Class} 
+refactorings\citing{refactoring}.
 
 \begin{quote}
   \ldots recoding is an extremely powerful weapon for increasing the amount of 
-  information that we can deal with.~\cite{miller1956}
+  information that we can deal with.\citing{miller1956}
 \end{quote}
 
 An example from the article address the problem of memorizing a sequence of 
 binary digits. Let us say we have the following sequence\footnote{The example 
   presented here is slightly modified (and shortened) from what is presented in 
-  the original article~\cite{miller1956}, but it is essentially the same.} of 
+  the original article\citing{miller1956}, but it is essentially the same.} of 
 16 binary digits: ``1010001001110011''. Most of us will have a hard time 
 memorizing this sequence by only reading it once or twice. Imagine if we instead 
 translate it to this sequence: ``A273''. If you have a background from computer 
@@ -286,7 +294,7 @@ like when children learn to read. First they must learn how to recognize
 letters. Then they can learn distinct words, and later read sequences of words 
 that form whole sentences. Eventually, most of them will be able to read whole 
 books and briefly retell the important parts of its content. This suggest that 
-the use of design patterns~\cite{dp} is a good idea when reasoning about 
+the use of design patterns\citing{dp} is a good idea when reasoning about 
 computer programs. With extensive use of design patterns when creating complex 
 program structures, one does not always have to read whole classes of code to 
 comprehend how they function, it may be sufficient to only see the name of a 
@@ -294,7 +302,7 @@ class to almost fully understand its responsibilities.
 
 \begin{quote}
   Our language is tremendously useful for repackaging material into a few chunks 
-  rich in information.~\cite{miller1956}
+  rich in information.\citing{miller1956}
 \end{quote}
 
 Without further evidence, these results at least indicates that refactoring 
@@ -307,13 +315,13 @@ better) understood.
 \todo{Update with more contributions}
 \begin{description}
   \item[1992] William F. Opdyke submits his doctoral dissertation called 
-    \emph{Refactoring Object-Oriented Frameworks}~\cite{opdyke1992}. This 
+    \emph{Refactoring Object-Oriented Frameworks}\citing{opdyke1992}. This 
     work defines a set of refactorings, that are behavior preserving given that 
     their preconditions are met. The dissertation is focused on the automation 
     of refactorings.
   \item[1999] Martin Fowler et al.: \emph{Refactoring: Improving the Design of 
-    Existing Code}~\cite{refactoring}. This is maybe the most influential text 
-    on refactoring. It bares similarities with Opdykes thesis~\cite{opdyke1992} 
+    Existing Code}\citing{refactoring}. This is maybe the most influential text 
+    on refactoring. It bares similarities with Opdykes thesis\citing{opdyke1992} 
     in the way that it provides a catalog of refactorings. But Fowler's book is 
     more about the craft of refactoring, as he focuses on establishing a 
     vocabulary for refactoring, together with the mechanics of different 
@@ -550,14 +558,14 @@ of the scope of this document.)
 \subsection{The impact on performance}
 \begin{quote}
   Refactoring certainly will make software go more slowly, but it also makes the 
-  software more amenable to performance tuning.~\cite{refactoring} % page 69
+  software more amenable to performance tuning.\citing{refactoring} % page 69
 \end{quote}
 
 \noindent There is a common belief that refactoring compromises performance, due 
 to increased degree of indirection and that polymorphism is slower than 
 conditionals.
 
-In a survey, Demeyer~\cite{demeyer2002} disproves this view in the case of 
+In a survey, Demeyer\citing{demeyer2002} disproves this view in the case of 
 polymorphism. He is doing an experiment on, what he calls, ``Transform Self Type 
 Checks'' where you introduce a new polymorphic method and a new class hierarchy 
 to get rid of a class' type checking of a ``type attribute``. He uses this kind 
@@ -571,8 +579,8 @@ between the way C++ handles polymorphism and case-statements.)
 
 \begin{quote}
   The interesting thing about performance is that if you analyze most programs, 
-  you find that they waste most of their time in a small fraction of the code.  
-  ~\cite{refactoring}
+  you find that they waste most of their time in a small fraction of the 
+  code.\citing{refactoring}
 \end{quote}
 
 \noindent So, although an increased amount of method calls could potentially 
@@ -593,8 +601,8 @@ be defined like this:
 \definition{A primitive refactoring is a refactoring that cannot be expressed in 
 terms of other refactorings.}
 
-\noindent Examples are the \emph{Pull Up Field} and \emph{Pull Up Method} 
-refactorings~\cite{refactoring}, that moves members up in their class 
+\noindent Examples are the \refactoring{Pull Up Field} and \refactoring{Pull Up 
+Method} refactorings\citing{refactoring}, that moves members up in their class 
 hierarchies.
 
 A composite refactoring is more complex, and can be defined like this:
@@ -602,15 +610,15 @@ A composite refactoring is more complex, and can be defined like this:
 \definition{A composite refactoring is a refactoring that can be expressed in 
 terms of two or more primitive refactorings.}
 
-\noindent An example of a composite refactoring is the \emph{Extract Superclass} 
-refactoring~\cite{refactoring}. In its simplest form, it is composed of the 
-previously described primitive refactorings, in addition to the \emph{Pull Up 
-Constructor Body} refactoring~\cite{refactoring}. It works by creating an 
-abstract superclass that the target class(es) inherits from, then by applying 
-\emph{Pull Up Field}, \emph{Pull Up Method} and \emph{Pull Up Constructor Body} 
-on the members that are to be members of the new superclass. For an overview of 
-the \emph{Extract Superclass} refactoring, see figure 
-\ref{fig:extractSuperclass}.
+\noindent An example of a composite refactoring is the \refactoring{Extract 
+Superclass} refactoring\citing{refactoring}. In its simplest form, it is composed 
+of the previously described primitive refactorings, in addition to the 
+\refactoring{Pull Up Constructor Body} refactoring\citing{refactoring}.  It works 
+by creating an abstract superclass that the target class(es) inherits from, then 
+by applying \refactoring{Pull Up Field}, \refactoring{Pull Up Method} and 
+\refactoring{Pull Up Constructor Body} on the members that are to be members of 
+the new superclass. For an overview of the \refactoring{Extract Superclass} 
+refactoring, see figure \ref{fig:extractSuperclass}.
 
 \begin{figure}[h]
   \centering
@@ -623,7 +631,7 @@ the \emph{Extract Superclass} refactoring, see figure
 Refactoring is something every programmer does, even if he or she does not known 
 the term \emph{refactoring}. Every refinement of source code that does not alter 
 the program's behavior is a refactoring. For small refactorings, such as 
-\emph{Extract Method}, executing it manually is a manageable task, but is still 
+\ExtractMethod, executing it manually is a manageable task, but is still 
 prone to errors. Getting it right the first time is not easy, considering the 
 signature and all the other aspects of the refactoring that has to be in place.  
 
@@ -641,8 +649,8 @@ one would have to be very confident on the existing test suite \see{tdd}.
 For automated refactorings to be truly useful, they must show a high degree of 
 behavior preservation. This might seem obvious, but there are examples of 
 refactorings in existing tools that break programs. \todo{More than Eclipse?} I 
-will now present an example of an \emph{Extract Method} refactoring followed by 
-a \emph{Move Method} refactoring that breaks a program. The following piece of 
+will now present an example of an \ExtractMethod refactoring followed by 
+a \MoveMethod refactoring that breaks a program. The following piece of 
 code shows the target for the composed refactoring:
 
 \begin{minted}[linenos]{java}
@@ -763,7 +771,7 @@ Edition} with an extended set of features, at additional cost. All three IDEs
 supports adding plugins to extend their functionality and tools that can be used 
 to parse and analyze Java source code. \todo{investigate if this is true} But 
 one of the IDEs stand out as a favorite, and that is the \emph{Eclipse IDE}.  
-This is the most popular~\cite{javaReport2011} among them and seems to be de 
+This is the most popular\citing{javaReport2011} among them and seems to be de 
 facto standard IDE for Java development regardless of platform.
 
 \chapter{Refactorings in Eclipse JDT: Design, Shortcomings and Wishful 
@@ -905,10 +913,10 @@ an abstraction layer on top of the existing Eclipse refactorings.
 
 \subsection{The Building Blocks}
 This is a composite refactoring, and hence is built up using several primitive 
-refactorings. These basic building blocks are, as its name implies, the Extract 
-Method Refactoring \cite{refactoring} and the Move Method Refactoring 
-\cite{refactoring}. In Eclipse, the implementations of these refactorings are 
-found in the classes 
+refactorings. These basic building blocks are, as its name implies, the 
+\ExtractMethod refactoring\citing{refactoring} and the \MoveMethod 
+refactoring\citing{refactoring}. In Eclipse, the implementations of these 
+refactorings are found in the classes 
 \typewithref{org.eclipse.jdt.internal.corext.refactoring.code}{ExtractMethodRefactoring} 
 and 
 \typewithref{org.eclipse.jdt.internal.corext.refactoring.structure}{MoveInstanceMethodProcessor}, 
-- 
2.43.5