[u/mrichter/AliRoot.git] / ANALYSIS / AliAnalysisAlien.h

#ifndef ALIANALYSISALIEN_H
#define ALIANALYSISALIEN_H
/* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
 * See cxx source for full Copyright notice                               */

// Author: Mihaela Gheata, 01/09/2008

//==============================================================================
//   AliAnalysisAlien - AliEn utility class. Provides interface for creating
// a personalized JDL, finding and creating a dataset.
//==============================================================================

#ifndef ALIANALYSISGRID_H
#include "AliAnalysisGrid.h"
#endif

#ifndef ROOT_TString
#include <TString.h>
#endif

#ifndef ROOT_TMath
#include <TMath.h>
#endif

#ifndef ROOT_TMap
#include <TMap.h>
#endif

class AliAnalysisManager;
class AliAnalysisTaskCfg;
class TGridJDL;

class AliAnalysisAlien : public AliAnalysisGrid {

public:

   AliAnalysisAlien();
   AliAnalysisAlien(const char *name);
   virtual ~AliAnalysisAlien();
   AliAnalysisAlien(const AliAnalysisAlien& other); 
   AliAnalysisAlien& operator=(const AliAnalysisAlien& other);
// Setters   
   virtual void        AddAdditionalLibrary(const char *name);
   virtual void        AddIncludePath(const char *path);
   virtual void        AddRunNumber(Int_t run);
   virtual void        AddRunNumber(const char *run);
   virtual void        AddRunList(const char *runList);
   virtual void        AddDataFile(const char *lfn);
   virtual void        AddExternalPackage(const char *name);
   virtual void        SetExecutable(const char *name="analysis.sh")     {fExecutable = name;}
   virtual void        SetExecutableCommand(const char *command="root -b -q") {fExecutableCommand = command;}
   virtual void        SetArguments(const char *name="")                 {fArguments = name;}
   virtual void        SetExecutableArgs(const char *name="")            {fExecutableArgs = name;}
   virtual void        SetAnalysisMacro(const char *name="myAnalysis.C") {fAnalysisMacro = name;}
   virtual void        SetAnalysisSource(const char *name="myAnalysisClass.cxx") {fAnalysisSource = name;}
   virtual void        SetValidationScript(const char *name="validation.sh") {fValidationScript = name;}
   virtual void        SetAdditionalLibs(const char *list)               {fAdditionalLibs = list;}
   virtual void        SetAdditionalRootLibs(const char *list)           {fAdditionalRootLibs = list;}
   virtual void        SetPrice(Int_t price=1)                           {fPrice = price;}
   virtual void        SetRunRange(Int_t min, Int_t max)                 {fRunRange[0] = min; fRunRange[1] = max;}
   virtual void        SetJobTag(const char *tag="")                     {fJobTag = tag;}
   virtual void        SetNrunsPerMaster(Int_t nruns=1)                  {fNrunsPerMaster = nruns;}
   virtual void        SetMaxMergeFiles(Int_t nfiles)                    {fMaxMergeFiles = nfiles;}
   virtual void        SetMaxMergeStages(Int_t nstages)                  {fMaxMergeStages = nstages;}
   virtual void        SetSplitMode(const char *type="se")               {fSplitMode = type;}
   virtual void        SetSplitMaxInputFileNumber(Int_t nfiles=100)      {fSplitMaxInputFileNumber = nfiles;}
   virtual void        SetAPIVersion(const char *version)                {fAPIVersion = version;}
   virtual void        SetROOTVersion(const char *version)               {fROOTVersion = version;}
   virtual void        SetAliROOTVersion(const char *version)            {fAliROOTVersion=version;}
   virtual void        SetUser(const char *user)                         {fUser = user;}
   virtual void        SetTTL(Int_t ttl=30000)                           {fTTL = ttl;}
   virtual void        SetGridWorkingDir(const char *name="workdir")     {fGridWorkingDir = name;}
   virtual void        SetGridDataDir(const char *name)                  {fGridDataDir = name;}
   void                SetGeneratorLibs(const char *libs)                {fGeneratorLibs = libs;}
   virtual void        SetDataPattern(const char *pattern="*AliESDs.root") {fDataPattern = pattern;}
   virtual void        SetFriendChainName(const char *name="", const char *libnames="");
   virtual void        SetDefaultOutputs(Bool_t flag);
   virtual void        SetGridOutputDir(const char *name="output")       {fGridOutputDir = name;}
   virtual void        SetOutputArchive(const char *list="log_archive.zip:std*@disk=1 root_archive.zip:*.root@disk=2");
   virtual void        SetOutputFiles(const char *list);
   virtual void        SetOutputToRunNo(Int_t mode=1)                    {fOutputToRunNo = mode;}
   virtual void        SetInputFormat(const char *format="xml-single")   {fInputFormat = format;}
   virtual void        SetMaxInitFailed(Int_t nfail=5)                   {fMaxInitFailed = nfail;}
   virtual void        SetTerminateFiles(const char *list)               {fTerminateFiles = list;}
   virtual void        SetMergeExcludes(const char *list)                {fMergeExcludes = list; fMergeExcludes.ReplaceAll(",", " "); }
   virtual void        SetMergeViaJDL(Bool_t on=kTRUE)                   {fMergeViaJDL = on ? 1 : 0;}
   virtual void        SetMergeDirName(const char *name)                 {fMergeDirName = name;}
   virtual void        SetMasterResubmitThreshold(Int_t percentage)      {fMasterResubmitThreshold = percentage;}
   void                SetMCLoop(Bool_t flag=kTRUE)                      {fMCLoop = flag;}
   virtual void        SetNtestFiles(Int_t nfiles)                       {fNtestFiles = nfiles;}
   virtual void        SetNumberOfReplicas(Int_t ncopies)                {fNreplicas = TMath::Min(ncopies,4);}
   virtual void        SetJDLName(const char *name="analysis.jdl")       {fJDLName = name;}
   virtual void        SetPreferedSE(const char *se);
   virtual void        SetProductionMode(Int_t mode=1)                   {fProductionMode = mode;}
   virtual void        SetRegisterExcludes(const char *list)             {fRegisterExcludes = list; fRegisterExcludes.ReplaceAll(",", " "); }
   virtual void        SetRunPrefix(const char *prefix);
   virtual void        SetOutputSingleFolder(const char *folder)         {fOutputSingle = folder; fSplitMode="file"; fSplitMaxInputFileNumber=1;}
   virtual void        SetFastReadOption(Bool_t on=kTRUE)                {fFastReadOption = on ? 1 : 0;}
   virtual void        SetOverwriteMode(Bool_t on=kTRUE)                 {fOverwriteMode = on ? 1 : 0;}
   virtual void        SetDropToShell(Bool_t drop=true)                  {fDropToShell = drop;}
   virtual void        SetTreeName(const char *name)                     {fTreeName = name;}

   TGridJDL           *GetGridJDL() const {return fGridJDL;}
   TGridJDL           *GetMergingJDL() const {return fMergingJDL;}
   const char         *GetGridOutputDir() const                          {return fGridOutputDir;}
   Int_t               GetNMCevents() const                              {return fNMCevents;}
   Int_t               GetNMCjobs() const                                {return fNMCjobs;}
   void                SetNMCevents(Int_t nevents)                       {fNMCevents = nevents;}
   void                SetNMCjobs(Int_t njobs)                           {fNMCjobs = njobs;}
//Utilities
   void                AddModule(AliAnalysisTaskCfg *module);
   void                AddModules(TObjArray *list);
   AliAnalysisManager *CreateAnalysisManager(const char *name, const char *filename="");
   Int_t               GetNmodules() const;
   AliAnalysisTaskCfg *GetModule(const char *name);
   Bool_t              LoadModules();
   Bool_t              LoadFriendLibs() const;
   Bool_t              GenerateTest(const char *name, const char *modname="");
   Bool_t              GenerateTrain(const char *name);
   virtual Bool_t      CreateDataset(const char *pattern);
   Int_t               CopyLocalDataset(const char *griddir, const char *pattern, Int_t nfiles, const char *output="data.txt", const char *archivefile="", const char *outputdir="data");
   virtual Bool_t      CreateJDL();
   virtual void        EnablePackage(const char *package);
   static Bool_t       DirectoryExists(const char *lfn);
   static Bool_t       FileExists(const char *lfn);
   static const char  *GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone);
   const char         *GetListOfFiles(const char *type);
   Bool_t              CheckMergedFiles(const char *filename, const char *aliendir, Int_t nperchunk, const char *jdl="");
   static AliAnalysisManager *LoadAnalysisManager(const char *fname);
   static Bool_t       MergeInfo(const char *output, const char *collection);
   static Bool_t       MergeOutput(const char *output, const char *basedir, Int_t nmaxmerge, Int_t stage=0);
   virtual Bool_t      MergeOutputs();
   virtual void        Print(Option_t *option="") const;
   static Long64_t     RunMacroAndExtractLibs(const char* macro, const char *args, TString &libs);
   virtual Bool_t      StartAnalysis(Long64_t nentries=123456789, Long64_t firstentry=0);
   static Bool_t       SetupPar(const char *package);
   virtual Bool_t      Submit();
   virtual Bool_t      SubmitMerging();
   static Int_t        SubmitSingleJob(const char *query);
   virtual void        WriteAnalysisFile();
   virtual void        WriteAnalysisMacro();
   virtual void        WriteMergingMacro();
   virtual void        WriteMergeExecutable();
   virtual void        WriteExecutable();
   virtual Bool_t      WriteJDL(Bool_t copy);
   virtual void        WriteProductionFile(const char *filename) const;
   virtual void        WriteValidationScript(Bool_t merge=kFALSE);

// PROOF mode
   virtual void        SetProofCluster(const char *cluster)              {fProofCluster = cluster;}
   virtual void        SetProofDataSet(const char *dataset)              {fProofDataSet = dataset;}
   virtual const char *GetProofDataSet() const                           {return fProofDataSet.Data();}
   virtual void        SetProofParameter(const char *pname, const char *value);
   const char         *GetProofParameter(const char *pname) const;
   virtual void        SetProofReset(Int_t mode)                         {fProofReset = mode;}
   virtual void        SetNproofWorkers(Int_t nworkers)                  {fNproofWorkers = nworkers;}
   virtual void        SetNproofWorkersPerSlave(Int_t nworkers)          {fNproofWorkersPerSlave = nworkers;}
   virtual void        SetRootVersionForProof(const char *version);
   virtual void        SetAliRootMode(const char *mode)                  {fAliRootMode = mode;}
   virtual void        SetProofProcessOpt(const char *proofOpt="")       {fProofProcessOpt = proofOpt;}
   virtual TString     GetProofProcessOpt()                              {return fProofProcessOpt;}
   // .txt file containing the list of files to be chained in test mode
   virtual void        SetFileForTestMode(const char *filename)          {fFileForTestMode = filename;}
   virtual TChain     *GetChainForTestMode(const char *treeName) const;
   virtual const TString& GetGridJobIDs() const { return fGridJobIDs; }
   virtual const TString& GetGridStages() const { return fGridStages; }
protected:
   void                CdWork();
   Bool_t              CheckInputData();
   void                CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags);
   virtual Bool_t      Connect();
   virtual void        SetDefaults();  
   Bool_t              SubmitNext();

   Bool_t              IsCollection(const char *lfn) const;
   Bool_t              IsMCLoop() const {return fMCLoop;}
   virtual Bool_t      IsSingleOutput() const;
   Bool_t              IsUsingTags() const {return TObject::TestBit(AliAnalysisGrid::kUseTags);}
   Bool_t              LoadModule(AliAnalysisTaskCfg *mod);
   Bool_t              CheckDependencies();
   Bool_t              CheckFileCopy(const char *alienpath);

private:
   TGridJDL        *fGridJDL;         //! JDL maker
   TGridJDL        *fMergingJDL;      //! JDL maker
   Int_t            fPrice;           // Grid price for the job;
   Int_t            fTTL;             // Time to live.
   Int_t            fSplitMaxInputFileNumber; // Maximum number of files to be processed per subjob
   Int_t            fMaxInitFailed;   // Maximum initial consecutive subjobs accepted to fail
   Int_t            fMasterResubmitThreshold; // Failed jobs will be resubmitted until this DONE ratio
   Int_t            fNtestFiles;      // Number of files used in the testing case
   Int_t            fRunRange[2];     // Run range
   Int_t            fNrunsPerMaster;  // Number of runs per masterjob
   Int_t            fMaxMergeFiles;   // Maximum number of files to be merged in one chunk
   Int_t            fMaxMergeStages;  // Maximum number of merging stages
   Int_t            fNsubmitted;      // Number of jobs submitted
   Int_t            fProductionMode;  // Production mode (0-off, 1-on)
   Int_t            fOutputToRunNo;   // Use run number as output directory
   Int_t            fMergeViaJDL;     // Enable merging via automatic JDL
   Int_t            fFastReadOption;  // Use xrootd tweaks to reduce timeouts in file access
   Int_t            fOverwriteMode;   // Overwrite existing files if any
   Int_t            fNreplicas;       // Number of replicas for the output files
   Int_t            fNproofWorkers;   // Number of workers in proof mode
   Int_t            fNproofWorkersPerSlave; // Max number of workers per slave in proof mode
   Int_t            fProofReset;      // Proof reset mode: 0=no reset, 1=soft, 2=hard
   Int_t            fNMCevents;       // Number of MC events in MC loop mode
   Int_t            fNMCjobs;         // Number of MC jobs in MC loop mode
   TString          fRunNumbers;      // List of runs to be processed
   TString          fExecutable;      // Executable script for AliEn job
   TString          fExecutableCommand;  // Command(s) to be executed in the executable script
   TString          fArguments;       // Arguments for the executable script
   TString          fExecutableArgs;  // arguments added to the executable script after the analysis macro
   TString          fAnalysisMacro;   // Root macro steering the analysis
   TString          fAnalysisSource;  // User analysis implementation (.cxx) file(s)
   TString          fValidationScript; // Name of the validation script
   TString          fAdditionalRootLibs;  // List (separated by blacs) of additional libraries needed for/before analysis libs/par file compilation
   TString          fAdditionalLibs;  // List (separated by blacs) of additional libraries needed for the analysis loaded AFTER all par files
   TString          fGeneratorLibs;   // Extra libraries needed by the generator
   TString          fSplitMode;       // Job split mode
   TString          fAPIVersion;      // API version
   TString          fROOTVersion;     // ROOT version
   TString          fAliROOTVersion;  // AliROOT version
   TString          fExternalPackages; // External packages
   TString          fUser;            // AliEn user name
   TString          fGridWorkingDir;  // AliEn directory containing the input packages
   TString          fGridDataDir;     // AliEn data production directory
   TString          fDataPattern;     // Data pattern for 'find' command
   TString          fGridOutputDir;   // AliEn directory (wrt work dir) where the output should be written
   TString          fOutputArchive;   // List of output archives separated by blancs
   TString          fOutputFiles;     // List of output files separated by blancs
   TString          fInputFormat;     // Input format (xml-single)
   TString          fDatasetName;     // Dataset xml file to be created
   TString          fJDLName;         // JDL file to be generated
   TString          fTerminateFiles;  // List of output files produced during Terminate
   TString          fMergeExcludes;   // List of output files excluded from merging
   TString          fRegisterExcludes; // List of liles not to be registered/merged
   TString          fIncludePath;     // Include path
   TString          fCloseSE;         // Preffered storage element. Taken from alien_CLOSE_SE environment.
   TString          fFriendChainName; // File name to construct friend chain (for AOD)
   TString          fJobTag;          // Job tag
   TString          fOutputSingle;    // Directory name for the output when split is per file
   TString          fRunPrefix;       // Run prefix to be applied to run numbers
   TString          fProofCluster;    // Proof cluster name
   TString          fProofDataSet;    // Proof dataset to be used
   TString          fFileForTestMode; // .txt file for the chain to be used in PROOF test mode
   TString          fAliRootMode;     // AliRoot mode among the list supported by the proof cluster
   TString          fProofProcessOpt; // Option passed to proof process
   TString          fMergeDirName;    // Name of the directory that should be added to the output directory
   TObjArray       *fInputFiles;      // List of input files to be processed by the job
   TObjArray       *fPackages;        // List of packages to be used
   TObjArray       *fModules;         // List of AliAnalysisTaskCfg modules
   TMap             fProofParam;      // Key-value pairs for proof mode
   Bool_t           fDropToShell;     // If true, execute aliensh on start
   Bool_t           fMCLoop;          // MC loop flag
   TString          fGridJobIDs;      // List of last committed jobs
   TString          fGridStages;      // List of last committed jobs
   TString          fFriendLibs;      // List of libs (separated by blacs) needed for friends processing
   TString          fTreeName;        // Name of the tree to be analyzed

   ClassDef(AliAnalysisAlien, 26)   // Class providing some AliEn utilities
};
#endif
Commit	Line	Data
c57f56b7	1	#ifndef ALIANALYSISALIEN_H
	2	#define ALIANALYSISALIEN_H
	3	/* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
	4	* See cxx source for full Copyright notice */
	5
	6	// Author: Mihaela Gheata, 01/09/2008
	7
	8	//==============================================================================
	9	// AliAnalysisAlien - AliEn utility class. Provides interface for creating
	10	// a personalized JDL, finding and creating a dataset.
	11	//==============================================================================
	12
	13	#ifndef ALIANALYSISGRID_H
	14	#include "AliAnalysisGrid.h"
	15	#endif
	16
	17	#ifndef ROOT_TString
	18	#include <TString.h>
	19	#endif
	20
149d288c	21	#ifndef ROOT_TMath
	22	#include <TMath.h>
	23	#endif
	24
28ce6c9c	25	#ifndef ROOT_TMap
	26	#include <TMap.h>
	27	#endif
	28
105631b5	29	class AliAnalysisManager;
77f34eae	30	class AliAnalysisTaskCfg;
c57f56b7	31	class TGridJDL;
	32
	33	class AliAnalysisAlien : public AliAnalysisGrid {
	34
	35	public:
	36
	37	AliAnalysisAlien();
	38	AliAnalysisAlien(const char *name);
	39	virtual ~AliAnalysisAlien();
	40	AliAnalysisAlien(const AliAnalysisAlien& other);
	41	AliAnalysisAlien& operator=(const AliAnalysisAlien& other);
	42	// Setters
37d21c01	43	virtual void AddAdditionalLibrary(const char *name);
f965131e	44	virtual void AddIncludePath(const char *path);
c57f56b7	45	virtual void AddRunNumber(Int_t run);
ee75cfc3	46	virtual void AddRunNumber(const char *run);
98690895	47	virtual void AddRunList(const char *runList);
c57f56b7	48	virtual void AddDataFile(const char *lfn);
648174cf	49	virtual void AddExternalPackage(const char *name);
c57f56b7	50	virtual void SetExecutable(const char *name="analysis.sh") {fExecutable = name;}
0a1c1f7f	51	virtual void SetExecutableCommand(const char *command="root -b -q") {fExecutableCommand = command;}
c57f56b7	52	virtual void SetArguments(const char *name="") {fArguments = name;}
631c0b05	53	virtual void SetExecutableArgs(const char *name="") {fExecutableArgs = name;}
c57f56b7	54	virtual void SetAnalysisMacro(const char *name="myAnalysis.C") {fAnalysisMacro = name;}
c57f56b7	55	virtual void SetAnalysisSource(const char *name="myAnalysisClass.cxx") {fAnalysisSource = name;}
d3b18c4c	56	virtual void SetValidationScript(const char *name="validation.sh") {fValidationScript = name;}
c57f56b7	57	virtual void SetAdditionalLibs(const char *list) {fAdditionalLibs = list;}
d5c6455a	58	virtual void SetAdditionalRootLibs(const char *list) {fAdditionalRootLibs = list;}
c57f56b7	59	virtual void SetPrice(Int_t price=1) {fPrice = price;}
a8739e8a	60	virtual void SetRunRange(Int_t min, Int_t max) {fRunRange[0] = min; fRunRange[1] = max;}
c6cb3634	61	virtual void SetJobTag(const char *tag="") {fJobTag = tag;}
319593fb	62	virtual void SetNrunsPerMaster(Int_t nruns=1) {fNrunsPerMaster = nruns;}
16a4353c	63	virtual void SetMaxMergeFiles(Int_t nfiles) {fMaxMergeFiles = nfiles;}
b3e07543	64	virtual void SetMaxMergeStages(Int_t nstages) {fMaxMergeStages = nstages;}
c57f56b7	65	virtual void SetSplitMode(const char *type="se") {fSplitMode = type;}
c57f56b7	66	virtual void SetSplitMaxInputFileNumber(Int_t nfiles=100) {fSplitMaxInputFileNumber = nfiles;}
149d288c	67	virtual void SetAPIVersion(const char *version) {fAPIVersion = version;}
	68	virtual void SetROOTVersion(const char *version) {fROOTVersion = version;}
	69	virtual void SetAliROOTVersion(const char *version) {fAliROOTVersion=version;}
c57f56b7	70	virtual void SetUser(const char *user) {fUser = user;}
	71	virtual void SetTTL(Int_t ttl=30000) {fTTL = ttl;}
	72	virtual void SetGridWorkingDir(const char *name="workdir") {fGridWorkingDir = name;}
	73	virtual void SetGridDataDir(const char *name) {fGridDataDir = name;}
b098b6ab	74	void SetGeneratorLibs(const char *libs) {fGeneratorLibs = libs;}
c57f56b7	75	virtual void SetDataPattern(const char pattern="AliESDs.root") {fDataPattern = pattern;}
a41b2882	76	virtual void SetFriendChainName(const char name="", const char libnames="");
bb885a9e	77	virtual void SetDefaultOutputs(Bool_t flag);
c57f56b7	78	virtual void SetGridOutputDir(const char *name="output") {fGridOutputDir = name;}
149d288c	79	virtual void SetOutputArchive(const char list="log_archive.zip:std@disk=1 root_archive.zip:*.root@disk=2");
149d288c	80	virtual void SetOutputFiles(const char *list);
cd11251e	81	virtual void SetOutputToRunNo(Int_t mode=1) {fOutputToRunNo = mode;}
c57f56b7	82	virtual void SetInputFormat(const char *format="xml-single") {fInputFormat = format;}
c57f56b7	83	virtual void SetMaxInitFailed(Int_t nfail=5) {fMaxInitFailed = nfail;}
d3b18c4c	84	virtual void SetTerminateFiles(const char *list) {fTerminateFiles = list;}
9afaa53e	85	virtual void SetMergeExcludes(const char *list) {fMergeExcludes = list; fMergeExcludes.ReplaceAll(",", " "); }
0f389141	86	virtual void SetMergeViaJDL(Bool_t on=kTRUE) {fMergeViaJDL = on ? 1 : 0;}
f47d5cb4	87	virtual void SetMergeDirName(const char *name) {fMergeDirName = name;}
c57f56b7	88	virtual void SetMasterResubmitThreshold(Int_t percentage) {fMasterResubmitThreshold = percentage;}
715da79c	89	void SetMCLoop(Bool_t flag=kTRUE) {fMCLoop = flag;}
bb885a9e	90	virtual void SetNtestFiles(Int_t nfiles) {fNtestFiles = nfiles;}
149d288c	91	virtual void SetNumberOfReplicas(Int_t ncopies) {fNreplicas = TMath::Min(ncopies,4);}
c57f56b7	92	virtual void SetJDLName(const char *name="analysis.jdl") {fJDLName = name;}
149d288c	93	virtual void SetPreferedSE(const char *se);
a3e84053	94	virtual void SetProductionMode(Int_t mode=1) {fProductionMode = mode;}
9afaa53e	95	virtual void SetRegisterExcludes(const char *list) {fRegisterExcludes = list; fRegisterExcludes.ReplaceAll(",", " "); }
74013535	96	virtual void SetRunPrefix(const char *prefix);
648174cf	97	virtual void SetOutputSingleFolder(const char *folder) {fOutputSingle = folder; fSplitMode="file"; fSplitMaxInputFileNumber=1;}
0f389141	98	virtual void SetFastReadOption(Bool_t on=kTRUE) {fFastReadOption = on ? 1 : 0;}
0f389141	99	virtual void SetOverwriteMode(Bool_t on=kTRUE) {fOverwriteMode = on ? 1 : 0;}
d88e4159	100	virtual void SetDropToShell(Bool_t drop=true) {fDropToShell = drop;}
780ec36d	101	virtual void SetTreeName(const char *name) {fTreeName = name;}
c57f56b7	102
0f389141	103	TGridJDL *GetGridJDL() const {return fGridJDL;}
0f389141	104	TGridJDL *GetMergingJDL() const {return fMergingJDL;}
5513444a	105	const char *GetGridOutputDir() const {return fGridOutputDir;}
715da79c	106	Int_t GetNMCevents() const {return fNMCevents;}
	107	Int_t GetNMCjobs() const {return fNMCjobs;}
	108	void SetNMCevents(Int_t nevents) {fNMCevents = nevents;}
	109	void SetNMCjobs(Int_t njobs) {fNMCjobs = njobs;}
c57f56b7	110	//Utilities
77f34eae	111	void AddModule(AliAnalysisTaskCfg *module);
77f34eae	112	void AddModules(TObjArray *list);
3e40fd4c	113	AliAnalysisManager CreateAnalysisManager(const char name, const char *filename="");
77f34eae	114	Int_t GetNmodules() const;
	115	AliAnalysisTaskCfg GetModule(const char name);
	116	Bool_t LoadModules();
a41b2882	117	Bool_t LoadFriendLibs() const;
21ca8e59	118	Bool_t GenerateTest(const char name, const char modname="");
139fe6ba	119	Bool_t GenerateTrain(const char *name);
c57f56b7	120	virtual Bool_t CreateDataset(const char *pattern);
4a8b667c	121	Int_t CopyLocalDataset(const char griddir, const char pattern, Int_t nfiles, const char output="data.txt", const char archivefile="", const char *outputdir="data");
c57f56b7	122	virtual Bool_t CreateJDL();
4e5c5506	123	virtual void EnablePackage(const char *package);
923e2ca5	124	static Bool_t DirectoryExists(const char *lfn);
5513444a	125	static Bool_t FileExists(const char *lfn);
a03be957	126	static const char *GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone);
f790bc1b	127	const char GetListOfFiles(const char type);
b3e07543	128	Bool_t CheckMergedFiles(const char filename, const char aliendir, Int_t nperchunk, const char *jdl="");
105631b5	129	static AliAnalysisManager LoadAnalysisManager(const char fname);
ec5acdce	130	static Bool_t MergeInfo(const char output, const char collection);
b3e07543	131	static Bool_t MergeOutput(const char output, const char basedir, Int_t nmaxmerge, Int_t stage=0);
c57f56b7	132	virtual Bool_t MergeOutputs();
16a4353c	133	virtual void Print(Option_t *option="") const;
715da79c	134	static Long64_t RunMacroAndExtractLibs(const char* macro, const char *args, TString &libs);
5513444a	135	virtual Bool_t StartAnalysis(Long64_t nentries=123456789, Long64_t firstentry=0);
0f389141	136	static Bool_t SetupPar(const char *package);
a03be957	137	virtual Bool_t Submit();
a03be957	138	virtual Bool_t SubmitMerging();
7c2cd90a	139	static Int_t SubmitSingleJob(const char *query);
c57f56b7	140	virtual void WriteAnalysisFile();
c57f56b7	141	virtual void WriteAnalysisMacro();
0f389141	142	virtual void WriteMergingMacro();
0f389141	143	virtual void WriteMergeExecutable();
c57f56b7	144	virtual void WriteExecutable();
5513444a	145	virtual Bool_t WriteJDL(Bool_t copy);
5513444a	146	virtual void WriteProductionFile(const char *filename) const;
0f389141	147	virtual void WriteValidationScript(Bool_t merge=kFALSE);
c57f56b7	148
3bdcb562	149	// PROOF mode
	150	virtual void SetProofCluster(const char *cluster) {fProofCluster = cluster;}
	151	virtual void SetProofDataSet(const char *dataset) {fProofDataSet = dataset;}
	152	virtual const char *GetProofDataSet() const {return fProofDataSet.Data();}
28ce6c9c	153	virtual void SetProofParameter(const char pname, const char value);
28ce6c9c	154	const char GetProofParameter(const char pname) const;
3bdcb562	155	virtual void SetProofReset(Int_t mode) {fProofReset = mode;}
3bdcb562	156	virtual void SetNproofWorkers(Int_t nworkers) {fNproofWorkers = nworkers;}
27734f0e	157	virtual void SetNproofWorkersPerSlave(Int_t nworkers) {fNproofWorkersPerSlave = nworkers;}
874de7ea	158	virtual void SetRootVersionForProof(const char *version);
3bdcb562	159	virtual void SetAliRootMode(const char *mode) {fAliRootMode = mode;}
d88e4159	160	virtual void SetProofProcessOpt(const char *proofOpt="") {fProofProcessOpt = proofOpt;}
d88e4159	161	virtual TString GetProofProcessOpt() {return fProofProcessOpt;}
3bdcb562	162	// .txt file containing the list of files to be chained in test mode
	163	virtual void SetFileForTestMode(const char *filename) {fFileForTestMode = filename;}
	164	virtual TChain GetChainForTestMode(const char treeName) const;
0ad3ea1f	165	virtual const TString& GetGridJobIDs() const { return fGridJobIDs; }
0ad3ea1f	166	virtual const TString& GetGridStages() const { return fGridStages; }
c57f56b7	167	protected:
	168	void CdWork();
	169	Bool_t CheckInputData();
	170	void CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags);
	171	virtual Bool_t Connect();
	172	virtual void SetDefaults();
a03be957	173	Bool_t SubmitNext();
c57f56b7	174
c57f56b7	175	Bool_t IsCollection(const char *lfn) const;
715da79c	176	Bool_t IsMCLoop() const {return fMCLoop;}
fe2d7fc2	177	virtual Bool_t IsSingleOutput() const;
c57f56b7	178	Bool_t IsUsingTags() const {return TObject::TestBit(AliAnalysisGrid::kUseTags);}
77f34eae	179	Bool_t LoadModule(AliAnalysisTaskCfg *mod);
77f34eae	180	Bool_t CheckDependencies();
b5ae4fe0	181	Bool_t CheckFileCopy(const char *alienpath);
c57f56b7	182
	183	private:
	184	TGridJDL *fGridJDL; //! JDL maker
0f389141	185	TGridJDL *fMergingJDL; //! JDL maker
c57f56b7	186	Int_t fPrice; // Grid price for the job;
	187	Int_t fTTL; // Time to live.
	188	Int_t fSplitMaxInputFileNumber; // Maximum number of files to be processed per subjob
	189	Int_t fMaxInitFailed; // Maximum initial consecutive subjobs accepted to fail
	190	Int_t fMasterResubmitThreshold; // Failed jobs will be resubmitted until this DONE ratio
bb885a9e	191	Int_t fNtestFiles; // Number of files used in the testing case
a8739e8a	192	Int_t fRunRange[2]; // Run range
319593fb	193	Int_t fNrunsPerMaster; // Number of runs per masterjob
16a4353c	194	Int_t fMaxMergeFiles; // Maximum number of files to be merged in one chunk
b3e07543	195	Int_t fMaxMergeStages; // Maximum number of merging stages
d2a409b2	196	Int_t fNsubmitted; // Number of jobs submitted
a3e84053	197	Int_t fProductionMode; // Production mode (0-off, 1-on)
cd11251e	198	Int_t fOutputToRunNo; // Use run number as output directory
0f389141	199	Int_t fMergeViaJDL; // Enable merging via automatic JDL
	200	Int_t fFastReadOption; // Use xrootd tweaks to reduce timeouts in file access
	201	Int_t fOverwriteMode; // Overwrite existing files if any
149d288c	202	Int_t fNreplicas; // Number of replicas for the output files
3bdcb562	203	Int_t fNproofWorkers; // Number of workers in proof mode
27734f0e	204	Int_t fNproofWorkersPerSlave; // Max number of workers per slave in proof mode
3bdcb562	205	Int_t fProofReset; // Proof reset mode: 0=no reset, 1=soft, 2=hard
715da79c	206	Int_t fNMCevents; // Number of MC events in MC loop mode
715da79c	207	Int_t fNMCjobs; // Number of MC jobs in MC loop mode
c57f56b7	208	TString fRunNumbers; // List of runs to be processed
c57f56b7	209	TString fExecutable; // Executable script for AliEn job
0a1c1f7f	210	TString fExecutableCommand; // Command(s) to be executed in the executable script
c57f56b7	211	TString fArguments; // Arguments for the executable script
631c0b05	212	TString fExecutableArgs; // arguments added to the executable script after the analysis macro
c57f56b7	213	TString fAnalysisMacro; // Root macro steering the analysis
c57f56b7	214	TString fAnalysisSource; // User analysis implementation (.cxx) file(s)
d3b18c4c	215	TString fValidationScript; // Name of the validation script
d5c6455a	216	TString fAdditionalRootLibs; // List (separated by blacs) of additional libraries needed for/before analysis libs/par file compilation
d5c6455a	217	TString fAdditionalLibs; // List (separated by blacs) of additional libraries needed for the analysis loaded AFTER all par files
715da79c	218	TString fGeneratorLibs; // Extra libraries needed by the generator
c57f56b7	219	TString fSplitMode; // Job split mode
	220	TString fAPIVersion; // API version
	221	TString fROOTVersion; // ROOT version
	222	TString fAliROOTVersion; // AliROOT version
648174cf	223	TString fExternalPackages; // External packages
c57f56b7	224	TString fUser; // AliEn user name
	225	TString fGridWorkingDir; // AliEn directory containing the input packages
	226	TString fGridDataDir; // AliEn data production directory
	227	TString fDataPattern; // Data pattern for 'find' command
	228	TString fGridOutputDir; // AliEn directory (wrt work dir) where the output should be written
	229	TString fOutputArchive; // List of output archives separated by blancs
	230	TString fOutputFiles; // List of output files separated by blancs
	231	TString fInputFormat; // Input format (xml-single)
	232	TString fDatasetName; // Dataset xml file to be created
	233	TString fJDLName; // JDL file to be generated
d3b18c4c	234	TString fTerminateFiles; // List of output files produced during Terminate
bb885a9e	235	TString fMergeExcludes; // List of output files excluded from merging
37d21c01	236	TString fRegisterExcludes; // List of liles not to be registered/merged
f965131e	237	TString fIncludePath; // Include path
bb885a9e	238	TString fCloseSE; // Preffered storage element. Taken from alien_CLOSE_SE environment.
0df6ccf2	239	TString fFriendChainName; // File name to construct friend chain (for AOD)
c6cb3634	240	TString fJobTag; // Job tag
648174cf	241	TString fOutputSingle; // Directory name for the output when split is per file
5fce53f4	242	TString fRunPrefix; // Run prefix to be applied to run numbers
3bdcb562	243	TString fProofCluster; // Proof cluster name
	244	TString fProofDataSet; // Proof dataset to be used
	245	TString fFileForTestMode; // .txt file for the chain to be used in PROOF test mode
3bdcb562	246	TString fAliRootMode; // AliRoot mode among the list supported by the proof cluster
d88e4159	247	TString fProofProcessOpt; // Option passed to proof process
f47d5cb4	248	TString fMergeDirName; // Name of the directory that should be added to the output directory
c57f56b7	249	TObjArray *fInputFiles; // List of input files to be processed by the job
4e5c5506	250	TObjArray *fPackages; // List of packages to be used
77f34eae	251	TObjArray *fModules; // List of AliAnalysisTaskCfg modules
28ce6c9c	252	TMap fProofParam; // Key-value pairs for proof mode
d88e4159	253	Bool_t fDropToShell; // If true, execute aliensh on start
715da79c	254	Bool_t fMCLoop; // MC loop flag
0ad3ea1f	255	TString fGridJobIDs; // List of last committed jobs
0ad3ea1f	256	TString fGridStages; // List of last committed jobs
a41b2882	257	TString fFriendLibs; // List of libs (separated by blacs) needed for friends processing
780ec36d	258	TString fTreeName; // Name of the tree to be analyzed
0ad3ea1f	259
715da79c	260	ClassDef(AliAnalysisAlien, 26) // Class providing some AliEn utilities
c57f56b7	261	};
c57f56b7	262	#endif