[u/mrichter/AliRoot.git] / ITS / AliITSOnlineSPDphysAnalyzer.cxx

/**************************************************************************
 * Copyright(c) 2007-2009, ALICE Experiment at CERN, All rights reserved. *
 *                                                                        *
 * Author: The ALICE Off-line Project.                                    *
 * Contributors are mentioned in the code where appropriate.              *
 *                                                                        *
 * Permission to use, copy, modify and distribute this software and its   *
 * documentation strictly for non-commercial purposes is hereby granted   *
 * without fee, provided that the above copyright notice appears in all   *
 * copies and that both the copyright notice and this permission notice   *
 * appear in the supporting documentation. The authors make no claims     *
 * about the suitability of this software for any purpose. It is          *
 * provided "as is" without express or implied warranty.                  *
 **************************************************************************/

////////////////////////////////////////////////////////////
// Author: Henrik Tydesjo                                 //
// This class is used in the detector algorithm framework //
// to process the data stored in special container files  //
// (see AliITSOnlineSPDphys).                             //
////////////////////////////////////////////////////////////

#include "AliITSOnlineSPDphysAnalyzer.h"
#include "AliITSOnlineSPDphys.h"
#include "AliITSOnlineCalibrationSPDhandler.h"
#include "AliITSRawStreamSPD.h"
#include "AliITSIntMap.h"
#include <TStyle.h>
#include <TMath.h>
#include <TF1.h>
#include <TGraph.h>
#include <TH2F.h>
#include <TError.h>
#include <iostream>
#include <fstream>

AliITSOnlineSPDphysAnalyzer::AliITSOnlineSPDphysAnalyzer(const Char_t *fileName, AliITSOnlineCalibrationSPDhandler* handler, Bool_t readFromGridFile) :
  fFileName(fileName),fPhysObj(NULL),fHandler(handler),
  fNrEnoughStatChips(0),fNrDeadChips(0),fNrInefficientChips(0),
  fNrEqHits(0),fbDeadProcessed(kFALSE),
  fThreshNoisy(1e-9),fThreshDead(1e-9),
  fMinEventsForNoisy(10000),fMinEventsForDead(10000),
  fDefinitelyNoisyRatio(0.3),
  fMinNrEqHitsForDeadChips(60000),fRatioToMeanForInefficientChip(0.1)
{
  // constructor  
  Init(readFromGridFile);
}

AliITSOnlineSPDphysAnalyzer::AliITSOnlineSPDphysAnalyzer(AliITSOnlineSPDphys* physObj, AliITSOnlineCalibrationSPDhandler* handler) :
  fFileName("test.root"),fPhysObj(NULL),fHandler(handler),
  fNrEnoughStatChips(0),fNrDeadChips(0),fNrInefficientChips(0),
  fNrEqHits(0),fbDeadProcessed(kFALSE),
  fThreshNoisy(1e-9),fThreshDead(1e-9),
  fMinEventsForNoisy(10000),fMinEventsForDead(10000),
  fDefinitelyNoisyRatio(0.3),
  fMinNrEqHitsForDeadChips(60000),fRatioToMeanForInefficientChip(0.1)
{
  // alt constructor
  fPhysObj = physObj;
}

AliITSOnlineSPDphysAnalyzer::AliITSOnlineSPDphysAnalyzer(const AliITSOnlineSPDphysAnalyzer& handle) :
  fFileName("test.root"),fPhysObj(NULL),fHandler(NULL),
  fNrEnoughStatChips(0),fNrDeadChips(0),fNrInefficientChips(0),
  fNrEqHits(0),fbDeadProcessed(kFALSE),
  fThreshNoisy(1e-9),fThreshDead(1e-9),
  fMinEventsForNoisy(10000),fMinEventsForDead(10000),
  fDefinitelyNoisyRatio(0.3),
  fMinNrEqHitsForDeadChips(60000),fRatioToMeanForInefficientChip(0.1)
{
  // copy constructor, only copies the filename and params (not the processed data)
  fFileName=handle.fFileName;
  fThreshNoisy = handle.fThreshNoisy;
  fThreshDead = handle.fThreshDead;
  fMinEventsForNoisy = handle.fMinEventsForNoisy;
  fMinEventsForDead = handle.fMinEventsForDead;
  fDefinitelyNoisyRatio = handle.fDefinitelyNoisyRatio;
  fMinNrEqHitsForDeadChips = handle.fMinNrEqHitsForDeadChips;
  fRatioToMeanForInefficientChip = handle.fRatioToMeanForInefficientChip;

  Init();
}

AliITSOnlineSPDphysAnalyzer::~AliITSOnlineSPDphysAnalyzer() {
  // destructor
  if (fPhysObj!=NULL) delete fPhysObj;
}

AliITSOnlineSPDphysAnalyzer& AliITSOnlineSPDphysAnalyzer::operator=(const AliITSOnlineSPDphysAnalyzer& handle) {
  // assignment operator, only copies the filename and params (not the processed data)
  if (this!=&handle) {
    if (fPhysObj!=NULL) delete fPhysObj;
    
    fFileName=handle.fFileName;
    fThreshNoisy = handle.fThreshNoisy;
    fThreshDead = handle.fThreshDead;
    fMinEventsForNoisy = handle.fMinEventsForNoisy;
    fMinEventsForDead = handle.fMinEventsForDead;
    fDefinitelyNoisyRatio = handle.fDefinitelyNoisyRatio;
    fMinNrEqHitsForDeadChips = handle.fMinNrEqHitsForDeadChips;
    fRatioToMeanForInefficientChip = handle.fRatioToMeanForInefficientChip;

    fPhysObj = NULL;
    fHandler = NULL;
    fNrEnoughStatChips = 0;
    fNrDeadChips = 0;
    fNrInefficientChips = 0;
    fNrEqHits = 0;
    fbDeadProcessed = kFALSE;

    Init();    
  }
  return *this;
}

void AliITSOnlineSPDphysAnalyzer::Init(Bool_t readFromGridFile) {
  // initialize container obj
  if (!readFromGridFile) {
    FILE* fp0 = fopen(fFileName.Data(), "r");
    if (fp0 == NULL) {
      return;
    }
    else {
      fclose(fp0);
    }
  }
  fPhysObj = new AliITSOnlineSPDphys(fFileName.Data(), readFromGridFile);
}

void AliITSOnlineSPDphysAnalyzer::SetParam(const Char_t *pname, const Char_t *pval) {
  // set a parameter
  TString name = pname;
  TString val = pval;
  //  printf("Setting Param %s  to %s\n",name.Data(),val.Data());
  if (name.CompareTo("MistakeProbabilityNoisy")==0) {
    Double_t mistakeProbabilityNoisy = val.Atof();
    fThreshNoisy = mistakeProbabilityNoisy/(20*6*10*32*256);
  }
  else if (name.CompareTo("MistakeProbabilityDead")==0) {
    Double_t mistakeProbabilityDead = val.Atof();
    fThreshDead = mistakeProbabilityDead/(20*6*10*32*256);
  }
  else if (name.CompareTo("fMinEventsForNoisy")==0) {
    fMinEventsForNoisy = val.Atoi();
  }
  else if (name.CompareTo("fMinEventsForDead")==0) {
    fMinEventsForDead = val.Atoi();
  }
  else if (name.CompareTo("fDefinitelyNoisyRatio")==0) {
    fDefinitelyNoisyRatio = val.Atof();
  }
  else if (name.CompareTo("fMinNrEqHitsForDeadChips")==0) {
    fMinNrEqHitsForDeadChips = val.Atof();
  }
  else if (name.CompareTo("fRatioToMeanForInefficientChip")==0) {
    fRatioToMeanForInefficientChip = val.Atof();
  }
  else {
    Error("AliITSOnlineSPDphysAnalyzer::SetParam","Parameter %s in configuration file unknown.",name.Data());
  }
}

void AliITSOnlineSPDphysAnalyzer::ReadParamsFromLocation(const Char_t *dirName) {
  // opens file (default name) in dir dirName and reads parameters from it
  TString paramsFileName = Form("%s/physics_params.txt",dirName);
  ifstream paramsFile;
  paramsFile.open(paramsFileName, ifstream::in);
  if (paramsFile.fail()) {
    printf("No config file (%s) present. Using default tuning parameters.\n",paramsFileName.Data());
  }
  else {
    while(1) {
      Char_t paramN[50];
      Char_t paramV[50];
      paramsFile >> paramN;
      if (paramsFile.eof()) break;
      paramsFile >> paramV;
      SetParam(paramN,paramV);
      if (paramsFile.eof()) break;
    }
    paramsFile.close();
  }
}


UInt_t AliITSOnlineSPDphysAnalyzer::ProcessNoisyPixels() {
  // process noisy pixel data , returns number of chips with enough statistics
  if (fPhysObj==NULL) {
    Warning("AliITSOnlineSPDphysAnalyzer::ProcessNoisyPixels","No data!");
    return 0;
  }
  // do we have enough events to even try the algorithm?
  if (GetNrEvents() < fMinEventsForNoisy) {
    Warning("AliITSOnlineSPDphysAnalyzer::ProcessNoisyPixels","Nr events (%d) < fMinEventsForNoisy (%d)!",GetNrEvents(),fMinEventsForNoisy);
    return 0;
  }
  // handler should be initialized
  if (fHandler==NULL) {
    Error("AliITSOnlineSPDphysAnalyzer::ProcessNoisyPixels","Calibration handler is not initialized!");
    return 0;
  }
  
  UInt_t nrEnoughStatChips = 0;

  for (UInt_t hs=0; hs<6; hs++) {
    for (UInt_t chip=0; chip<10; chip++) {

      UInt_t nrPixels = 0;
      UInt_t nrChipHits = 0;
      UInt_t nrMostHits = 0;
      for (UInt_t col=0; col<32; col++) {
	for (UInt_t row=0; row<256; row++) {
	  UInt_t nrHits = fPhysObj->GetHits(hs,chip,col,row);
	  nrChipHits += nrHits;
	  //	  if (nrHits>0) nrPixels++; // don't include pixels that might be dead
	  nrPixels++;
	  if (nrHits>fDefinitelyNoisyRatio*GetNrEvents()) {
	    fHandler->SetNoisyPixel(GetEqNr(),hs,chip,col,row);
	    nrPixels--;
	    nrChipHits-=nrHits;
	  }
	  else {
	    if (nrMostHits<nrHits) nrMostHits=nrHits;
	  }
	}
      }

      if (nrChipHits>0) { // otherwise there are for sure no noisy
	// Binomial with n events and probability p for pixel hit
	UInt_t n = GetNrEvents();
	if (nrPixels>0 && n>0) {

	  Double_t p = (Double_t)nrChipHits/nrPixels/n;

	  // Bin(n,k=0):
	  Double_t bin = pow((Double_t)(1-p),(Double_t)n);
	  // Bin(n,k)
	  UInt_t k=1;
	  while ((bin>fThreshNoisy || k<n*p) && k<=n) {
	    k++;
	    bin = bin*(n-k+1)/k*p/(1-p);
	  }
	  
	  // can we find noisy pixels...?
	  if (k<=n) {
	    //	    printf("eq %d , hs %d , chip %d : Noisy level = %d\n",GetEqNr(),hs,chip,k);
	    nrEnoughStatChips++;
	    // add noisy pixels to handler
	    UInt_t noiseLimit=k;
	    if (nrMostHits>=noiseLimit) {
	      for (UInt_t col=0; col<32; col++) {
		for (UInt_t row=0; row<256; row++) {
		  UInt_t nrHits = fPhysObj->GetHits(hs,chip,col,row);
		  if (nrHits >= noiseLimit) {
		    fHandler->SetNoisyPixel(GetEqNr(),hs,chip,col,row);
		  }
		}
	      }
	    }
	  }
	}

      }

    } // for chip
  } // for hs

  return nrEnoughStatChips;
}


UInt_t AliITSOnlineSPDphysAnalyzer::ProcessDeadPixels() {
  // process dead pixel data , returns number of chips with enough statistics
  if (fPhysObj==NULL) {
    Warning("AliITSOnlineSPDphysAnalyzer::ProcessDeadPixels","No data!");
    return 0;
  }

  // do we have enough events to even try the algorithm?
  if (GetNrEvents() < fMinEventsForDead) {
    Warning("AliITSOnlineSPDphysAnalyzer::ProcessDeadPixels","Nr events (%d) < fMinEventsForDead (%d)!",GetNrEvents(),fMinEventsForDead);
    return 0;
  }
  // handler should be initialized
  if (fHandler==NULL) {
    Error("AliITSOnlineSPDphysAnalyzer::ProcessDeadPixels","Calibration handler is not initialized!");
    return 0;
  }

  AliITSIntMap* possiblyDead  = new AliITSIntMap();
  AliITSIntMap* possiblyIneff = new AliITSIntMap();

  fNrEnoughStatChips = 0;
  fNrDeadChips = 0;
  fNrInefficientChips = 0;
  UInt_t nrPossiblyDeadChips = 0;
  fNrEqHits = 0;


  for (UInt_t hs=0; hs<6; hs++) {
    if (!fHandler->IsActiveHS(GetEqNr(),hs)) {
      fNrDeadChips+=10;
    }
    else {
      for (UInt_t chip=0; chip<10; chip++) {
	if (!fHandler->IsActiveChip(GetEqNr(),hs,chip)) {
	  fNrDeadChips++;
	}
	else {
	  // perform search for individual dead pixels...
	  Bool_t good=kFALSE;

	  UInt_t nrPossiblyDeadPixels = 0;
	  UInt_t nrPixels = 0;
	  UInt_t nrChipHits = 0;
	  for (UInt_t col=0; col<32; col++) {
	    for (UInt_t row=0; row<256; row++) {
	      UInt_t nrHits = fPhysObj->GetHits(hs,chip,col,row);
	      nrChipHits += nrHits;
	      if (!fHandler->IsPixelNoisy(GetEqNr(),hs,chip,col,row)) {
		// don't include noisy pixels
		nrPixels++;
		if (nrHits==0) {
		  nrPossiblyDeadPixels++;
		}
		else {
		  fHandler->UnSetDeadPixel(GetEqNr(),hs,chip,col,row); // unset (no action unless dead before)
		}
	      }
	      else {
		nrChipHits -= nrHits; // this is needed when running offline (online nrHits should be 0 already)
	      }
	    }
	  }
	  fNrEqHits+=nrChipHits;

	  if (nrChipHits>0) {
	    // make sure the chip is not flagged as dead
	    fHandler->SetDeadChip(GetEqNr(),hs,chip,kFALSE);
	  }

	  if (nrPossiblyDeadPixels==0) {
	    // no need to see if we have enough statistics...
	    fNrEnoughStatChips++;
	    good=kTRUE;
	    //	printf("%3d",good);
	    //	if (chip==9) printf("\n");
	    continue;
	  }

	  if (nrChipHits==0) {
	    nrPossiblyDeadChips++;
	    possiblyDead->Insert(hs,chip);
	    good=kFALSE;
	    //	printf("%3d",good);
	    //	if (chip==9) printf("\n");
	    continue;
	  }

	  // Binomial with n events and probability p for pixel hit
	  UInt_t n = GetNrEvents();
	  if (nrPixels>0 && n>0) {

	    Double_t p = (Double_t)nrChipHits/nrPixels/n;

	    // probability of falsely assigning a dead pixel
	    Double_t falselyDeadProb = pow((Double_t)(1-p),(Double_t)n);
	    //	    printf("falselyprob=%e\n",falselyDeadProb);

	    // can we find dead pixels...?
	    if (falselyDeadProb<fThreshDead) {
	      fNrEnoughStatChips++;
	      good=kTRUE;
	      // add dead pixels to handler
	      for (UInt_t col=0; col<32; col++) {
		for (UInt_t row=0; row<256; row++) {
		  UInt_t nrHits = fPhysObj->GetHits(hs,chip,col,row);
		  if (nrHits==0) {
		    if (!fHandler->IsPixelNoisy(GetEqNr(),hs,chip,col,row)) {
		      // don't include noisy pixels
		      fHandler->SetDeadPixel(GetEqNr(),hs,chip,col,row);
		    }
		  }
		}
	      }
	    }
	    if (!good) {
	      // this might be an inefficient chip
	      possiblyIneff->Insert(hs*10+chip,nrChipHits);
	    }

	  }
	  else {
	    if (n>0) {
	      // this is a completely noisy chip... put in category enough stat
	      fNrEnoughStatChips++;
	      good=kTRUE;
	    }
	  }

	  //      printf("%3d",good);
	  //      if (chip==9) printf("\n");

	}
      } // for chip
    }
  } // for hs
 

  Int_t key,val;

  // dead chips?
  if (fNrEqHits>fMinNrEqHitsForDeadChips) {
    while (possiblyDead->Pop(key,val)) {
      fHandler->SetDeadChip(GetEqNr(),key,val,kFALSE);
    }
    fNrDeadChips+=nrPossiblyDeadChips;
  }
  delete possiblyDead;

  // inefficient chips?
  while (possiblyIneff->Pop(key,val)) {
    if (val<fNrEqHits/60*fRatioToMeanForInefficientChip) {
      fNrInefficientChips++;
    }
  }
  delete possiblyIneff;


  fbDeadProcessed = kTRUE;

  return fNrEnoughStatChips;
}


UInt_t AliITSOnlineSPDphysAnalyzer::GetNrEnoughStatChips() {
  // returns nr of enough stat chips
  if (!fbDeadProcessed) ProcessDeadPixels();
  return fNrEnoughStatChips;
}
UInt_t AliITSOnlineSPDphysAnalyzer::GetNrDeadChips() {
  // returns nr of dead chips
  if (!fbDeadProcessed) ProcessDeadPixels();
  return fNrDeadChips;
}
UInt_t AliITSOnlineSPDphysAnalyzer::GetNrInefficientChips() {
  // returns nr of inefficient chips
  if (!fbDeadProcessed) ProcessDeadPixels();
  return fNrInefficientChips;
}
UInt_t AliITSOnlineSPDphysAnalyzer::GetNrNeedsMoreStatChips() {
  // returns nr of needs more stat chips
  if (!fbDeadProcessed) ProcessDeadPixels();
  return 60-fNrEnoughStatChips-fNrDeadChips-fNrInefficientChips;
}

UInt_t AliITSOnlineSPDphysAnalyzer::GetEqNr() const {
  // returns the eq nr of phys obj
  if (fPhysObj!=NULL) return fPhysObj->GetEqNr(); 
  else return 999;
}

UInt_t AliITSOnlineSPDphysAnalyzer::GetNrEvents() const {
  // returns the nr of events of phys obj
  if (fPhysObj!=NULL) return fPhysObj->GetNrEvents(); 
  else return 0;
}

void AliITSOnlineSPDphysAnalyzer::Exponent(Double_t &val, Int_t &valExp) const {
  // put double in format with val and exp so that 1<val<10 - The actual value is val*10e(valExp)
  while (val>10) {
    val/=10;
    valExp++;
  }
  while (val<1) {
    val*=10;
    valExp--;
  }
}


TH2F* AliITSOnlineSPDphysAnalyzer::GetHitMapTot() {
  // creates and returns a pointer to a hitmap histo (half sector style a la spdmood)
  if (fPhysObj==NULL) {
    Error("AliITSOnlineSPDphysAnalyzer::GetHitMapTot","No data!");
    return NULL;
  }
  TString histoname = Form("Eq %d",GetEqNr());
  TH2F* fHitMapTot = new TH2F(histoname.Data(),histoname.Data(),32*10,-0.5,32*10-0.5,256*6,-0.5,256*6-0.5);
  fHitMapTot->SetNdivisions(-10,"X");
  fHitMapTot->SetNdivisions(-006,"Y");
  fHitMapTot->SetTickLength(0,"X");
  fHitMapTot->SetTickLength(0,"Y");
  fHitMapTot->GetXaxis()->SetLabelColor(gStyle->GetCanvasColor());
  fHitMapTot->GetYaxis()->SetLabelColor(gStyle->GetCanvasColor());
  for (UInt_t hs=0; hs<6; hs++) {
    for (UInt_t chipNr=0; chipNr<10; chipNr++) {
      for (UInt_t col=0; col<32; col++) {
	for (UInt_t row=0; row<256; row++) {
	  fHitMapTot->Fill(chipNr*32+col,(5-hs)*256+row,fPhysObj->GetHits(hs,chipNr,col,row));
	}
      }
    }
  }
  return fHitMapTot;
}

TH2F* AliITSOnlineSPDphysAnalyzer::GetHitMapChip(UInt_t hs, UInt_t chip) {
  // creates and returns a pointer to a hitmap histo (chip style a la spdmood)
  if (fPhysObj==NULL) {
    Error("AliITSOnlineSPDphysAnalyzer::GetHitMapChip","No data!");
    return NULL;
  }

  TString histoName;
  TString histoTitle;
  histoName = Form("fChipHisto_%d_%d_%d", GetEqNr(), hs, chip);
  histoTitle = Form("Eq ID %d, Half Stave %d, Chip %d", GetEqNr(), hs, chip);

  TH2F *returnHisto = new TH2F(histoName.Data(), histoTitle.Data(), 32, -0.5, 31.5, 256, -0.5, 255.5);
  returnHisto->SetMinimum(0);
  for (UInt_t col=0; col<32; col++) {
    for (UInt_t row=0; row<256; row++) {
      returnHisto->Fill(col,row,fPhysObj->GetHits(hs,chip,col,row));
    }
  }

  return returnHisto;
}
Commit	Line	Data
6727e2db	1	/**************************************************************************
	2	* Copyright(c) 2007-2009, ALICE Experiment at CERN, All rights reserved. *
	3	* *
	4	* Author: The ALICE Off-line Project. *
	5	* Contributors are mentioned in the code where appropriate. *
	6	* *
	7	* Permission to use, copy, modify and distribute this software and its *
	8	* documentation strictly for non-commercial purposes is hereby granted *
	9	* without fee, provided that the above copyright notice appears in all *
	10	* copies and that both the copyright notice and this permission notice *
	11	* appear in the supporting documentation. The authors make no claims *
	12	* about the suitability of this software for any purpose. It is *
	13	* provided "as is" without express or implied warranty. *
	14	**************************************************************************/
	15
	16	////////////////////////////////////////////////////////////
	17	// Author: Henrik Tydesjo //
	18	// This class is used in the detector algorithm framework //
	19	// to process the data stored in special container files //
	20	// (see AliITSOnlineSPDphys). //
	21	////////////////////////////////////////////////////////////
	22
	23	#include "AliITSOnlineSPDphysAnalyzer.h"
	24	#include "AliITSOnlineSPDphys.h"
	25	#include "AliITSOnlineCalibrationSPDhandler.h"
	26	#include "AliITSRawStreamSPD.h"
	27	#include "AliITSIntMap.h"
	28	#include <TStyle.h>
	29	#include <TMath.h>
	30	#include <TF1.h>
	31	#include <TGraph.h>
	32	#include <TH2F.h>
	33	#include <TError.h>
	34	#include <iostream>
	35	#include <fstream>
	36
6ddf3d66	37	AliITSOnlineSPDphysAnalyzer::AliITSOnlineSPDphysAnalyzer(const Char_t fileName, AliITSOnlineCalibrationSPDhandler handler, Bool_t readFromGridFile) :
6727e2db	38	fFileName(fileName),fPhysObj(NULL),fHandler(handler),
	39	fNrEnoughStatChips(0),fNrDeadChips(0),fNrInefficientChips(0),
	40	fNrEqHits(0),fbDeadProcessed(kFALSE),
ca837694	41	fThreshNoisy(1e-9),fThreshDead(1e-9),
6727e2db	42	fMinEventsForNoisy(10000),fMinEventsForDead(10000),
ca837694	43	fDefinitelyNoisyRatio(0.3),
ca837694	44	fMinNrEqHitsForDeadChips(60000),fRatioToMeanForInefficientChip(0.1)
6727e2db	45	{
6727e2db	46	// constructor
6ddf3d66	47	Init(readFromGridFile);
6727e2db	48	}
	49
	50	AliITSOnlineSPDphysAnalyzer::AliITSOnlineSPDphysAnalyzer(AliITSOnlineSPDphys* physObj, AliITSOnlineCalibrationSPDhandler* handler) :
	51	fFileName("test.root"),fPhysObj(NULL),fHandler(handler),
	52	fNrEnoughStatChips(0),fNrDeadChips(0),fNrInefficientChips(0),
	53	fNrEqHits(0),fbDeadProcessed(kFALSE),
ca837694	54	fThreshNoisy(1e-9),fThreshDead(1e-9),
6727e2db	55	fMinEventsForNoisy(10000),fMinEventsForDead(10000),
ca837694	56	fDefinitelyNoisyRatio(0.3),
ca837694	57	fMinNrEqHitsForDeadChips(60000),fRatioToMeanForInefficientChip(0.1)
6727e2db	58	{
	59	// alt constructor
	60	fPhysObj = physObj;
	61	}
	62
	63	AliITSOnlineSPDphysAnalyzer::AliITSOnlineSPDphysAnalyzer(const AliITSOnlineSPDphysAnalyzer& handle) :
	64	fFileName("test.root"),fPhysObj(NULL),fHandler(NULL),
	65	fNrEnoughStatChips(0),fNrDeadChips(0),fNrInefficientChips(0),
	66	fNrEqHits(0),fbDeadProcessed(kFALSE),
ca837694	67	fThreshNoisy(1e-9),fThreshDead(1e-9),
6727e2db	68	fMinEventsForNoisy(10000),fMinEventsForDead(10000),
ca837694	69	fDefinitelyNoisyRatio(0.3),
ca837694	70	fMinNrEqHitsForDeadChips(60000),fRatioToMeanForInefficientChip(0.1)
6727e2db	71	{
	72	// copy constructor, only copies the filename and params (not the processed data)
	73	fFileName=handle.fFileName;
	74	fThreshNoisy = handle.fThreshNoisy;
6727e2db	75	fThreshDead = handle.fThreshDead;
6727e2db	76	fMinEventsForNoisy = handle.fMinEventsForNoisy;
	77	fMinEventsForDead = handle.fMinEventsForDead;
	78	fDefinitelyNoisyRatio = handle.fDefinitelyNoisyRatio;
	79	fMinNrEqHitsForDeadChips = handle.fMinNrEqHitsForDeadChips;
	80	fRatioToMeanForInefficientChip = handle.fRatioToMeanForInefficientChip;
	81
	82	Init();
	83	}
	84
	85	AliITSOnlineSPDphysAnalyzer::~AliITSOnlineSPDphysAnalyzer() {
	86	// destructor
	87	if (fPhysObj!=NULL) delete fPhysObj;
	88	}
	89
	90	AliITSOnlineSPDphysAnalyzer& AliITSOnlineSPDphysAnalyzer::operator=(const AliITSOnlineSPDphysAnalyzer& handle) {
	91	// assignment operator, only copies the filename and params (not the processed data)
	92	if (this!=&handle) {
	93	if (fPhysObj!=NULL) delete fPhysObj;
	94
	95	fFileName=handle.fFileName;
	96	fThreshNoisy = handle.fThreshNoisy;
6727e2db	97	fThreshDead = handle.fThreshDead;
6727e2db	98	fMinEventsForNoisy = handle.fMinEventsForNoisy;
	99	fMinEventsForDead = handle.fMinEventsForDead;
	100	fDefinitelyNoisyRatio = handle.fDefinitelyNoisyRatio;
	101	fMinNrEqHitsForDeadChips = handle.fMinNrEqHitsForDeadChips;
	102	fRatioToMeanForInefficientChip = handle.fRatioToMeanForInefficientChip;
	103
	104	fPhysObj = NULL;
	105	fHandler = NULL;
	106	fNrEnoughStatChips = 0;
	107	fNrDeadChips = 0;
	108	fNrInefficientChips = 0;
	109	fNrEqHits = 0;
	110	fbDeadProcessed = kFALSE;
	111
	112	Init();
	113	}
	114	return *this;
	115	}
	116
6ddf3d66	117	void AliITSOnlineSPDphysAnalyzer::Init(Bool_t readFromGridFile) {
6727e2db	118	// initialize container obj
6ddf3d66	119	if (!readFromGridFile) {
	120	FILE* fp0 = fopen(fFileName.Data(), "r");
	121	if (fp0 == NULL) {
	122	return;
	123	}
	124	else {
	125	fclose(fp0);
	126	}
6727e2db	127	}
6ddf3d66	128	fPhysObj = new AliITSOnlineSPDphys(fFileName.Data(), readFromGridFile);
6727e2db	129	}
	130
	131	void AliITSOnlineSPDphysAnalyzer::SetParam(const Char_t pname, const Char_t pval) {
	132	// set a parameter
	133	TString name = pname;
	134	TString val = pval;
	135	// printf("Setting Param %s to %s\n",name.Data(),val.Data());
	136	if (name.CompareTo("MistakeProbabilityNoisy")==0) {
	137	Double_t mistakeProbabilityNoisy = val.Atof();
ca837694	138	fThreshNoisy = mistakeProbabilityNoisy/(2061032256);
6727e2db	139	}
	140	else if (name.CompareTo("MistakeProbabilityDead")==0) {
	141	Double_t mistakeProbabilityDead = val.Atof();
ca837694	142	fThreshDead = mistakeProbabilityDead/(2061032256);
6727e2db	143	}
	144	else if (name.CompareTo("fMinEventsForNoisy")==0) {
	145	fMinEventsForNoisy = val.Atoi();
	146	}
	147	else if (name.CompareTo("fMinEventsForDead")==0) {
	148	fMinEventsForDead = val.Atoi();
	149	}
	150	else if (name.CompareTo("fDefinitelyNoisyRatio")==0) {
	151	fDefinitelyNoisyRatio = val.Atof();
	152	}
	153	else if (name.CompareTo("fMinNrEqHitsForDeadChips")==0) {
	154	fMinNrEqHitsForDeadChips = val.Atof();
	155	}
	156	else if (name.CompareTo("fRatioToMeanForInefficientChip")==0) {
	157	fRatioToMeanForInefficientChip = val.Atof();
	158	}
	159	else {
	160	Error("AliITSOnlineSPDphysAnalyzer::SetParam","Parameter %s in configuration file unknown.",name.Data());
	161	}
	162	}
	163
	164	void AliITSOnlineSPDphysAnalyzer::ReadParamsFromLocation(const Char_t *dirName) {
	165	// opens file (default name) in dir dirName and reads parameters from it
	166	TString paramsFileName = Form("%s/physics_params.txt",dirName);
	167	ifstream paramsFile;
	168	paramsFile.open(paramsFileName, ifstream::in);
	169	if (paramsFile.fail()) {
	170	printf("No config file (%s) present. Using default tuning parameters.\n",paramsFileName.Data());
	171	}
	172	else {
	173	while(1) {
	174	Char_t paramN[50];
	175	Char_t paramV[50];
	176	paramsFile >> paramN;
	177	if (paramsFile.eof()) break;
	178	paramsFile >> paramV;
	179	SetParam(paramN,paramV);
	180	if (paramsFile.eof()) break;
	181	}
	182	paramsFile.close();
	183	}
	184	}
	185
	186
	187	UInt_t AliITSOnlineSPDphysAnalyzer::ProcessNoisyPixels() {
	188	// process noisy pixel data , returns number of chips with enough statistics
	189	if (fPhysObj==NULL) {
	190	Warning("AliITSOnlineSPDphysAnalyzer::ProcessNoisyPixels","No data!");
	191	return 0;
	192	}
	193	// do we have enough events to even try the algorithm?
	194	if (GetNrEvents() < fMinEventsForNoisy) {
	195	Warning("AliITSOnlineSPDphysAnalyzer::ProcessNoisyPixels","Nr events (%d) < fMinEventsForNoisy (%d)!",GetNrEvents(),fMinEventsForNoisy);
	196	return 0;
	197	}
	198	// handler should be initialized
	199	if (fHandler==NULL) {
	200	Error("AliITSOnlineSPDphysAnalyzer::ProcessNoisyPixels","Calibration handler is not initialized!");
	201	return 0;
	202	}
	203
	204	UInt_t nrEnoughStatChips = 0;
	205
	206	for (UInt_t hs=0; hs<6; hs++) {
207	for (UInt_t chip=0; chip<10; chip++) {
208
209	UInt_t nrPixels = 0;
210	UInt_t nrChipHits = 0;
211	UInt_t nrMostHits = 0;
212	for (UInt_t col=0; col<32; col++) {
213	for (UInt_t row=0; row<256; row++) {
214	UInt_t nrHits = fPhysObj->GetHits(hs,chip,col,row);
215	nrChipHits += nrHits;
216	// if (nrHits>0) nrPixels++; // don't include pixels that might be dead
217	nrPixels++;
218	if (nrHits>fDefinitelyNoisyRatio*GetNrEvents()) {
219	fHandler->SetNoisyPixel(GetEqNr(),hs,chip,col,row);
220	nrPixels--;
221	nrChipHits-=nrHits;
222	}
223	else {
224	if (nrMostHits<nrHits) nrMostHits=nrHits;
225	}
226	}
227	}
228
229	if (nrChipHits>0) { // otherwise there are for sure no noisy
230	// Binomial with n events and probability p for pixel hit
231	UInt_t n = GetNrEvents();
232	if (nrPixels>0 && n>0) {
233
234	Double_t p = (Double_t)nrChipHits/nrPixels/n;
235
6727e2db	236	// Bin(n,k=0):
38aa9b59	237	Double_t bin = pow((Double_t)(1-p),(Double_t)n);
6727e2db	238	// Bin(n,k)
6727e2db	239	UInt_t k=1;
ca837694	240	while ((bin>fThreshNoisy \|\| k<n*p) && k<=n) {
6727e2db	241	k++;
6727e2db	242	bin = bin(n-k+1)/kp/(1-p);
6727e2db	243	}
	244
	245	// can we find noisy pixels...?
	246	if (k<=n) {
	247	// printf("eq %d , hs %d , chip %d : Noisy level = %d\n",GetEqNr(),hs,chip,k);
	248	nrEnoughStatChips++;
	249	// add noisy pixels to handler
	250	UInt_t noiseLimit=k;
	251	if (nrMostHits>=noiseLimit) {
	252	for (UInt_t col=0; col<32; col++) {
	253	for (UInt_t row=0; row<256; row++) {
	254	UInt_t nrHits = fPhysObj->GetHits(hs,chip,col,row);
	255	if (nrHits >= noiseLimit) {
	256	fHandler->SetNoisyPixel(GetEqNr(),hs,chip,col,row);
	257	}
	258	}
	259	}
	260	}
	261	}
	262	}
	263
	264	}
	265
	266	} // for chip
	267	} // for hs
	268
	269	return nrEnoughStatChips;
	270	}
	271
	272
	273	UInt_t AliITSOnlineSPDphysAnalyzer::ProcessDeadPixels() {
	274	// process dead pixel data , returns number of chips with enough statistics
	275	if (fPhysObj==NULL) {
	276	Warning("AliITSOnlineSPDphysAnalyzer::ProcessDeadPixels","No data!");
	277	return 0;
	278	}
ca837694	279
6727e2db	280	// do we have enough events to even try the algorithm?
	281	if (GetNrEvents() < fMinEventsForDead) {
	282	Warning("AliITSOnlineSPDphysAnalyzer::ProcessDeadPixels","Nr events (%d) < fMinEventsForDead (%d)!",GetNrEvents(),fMinEventsForDead);
	283	return 0;
	284	}
	285	// handler should be initialized
	286	if (fHandler==NULL) {
	287	Error("AliITSOnlineSPDphysAnalyzer::ProcessDeadPixels","Calibration handler is not initialized!");
	288	return 0;
	289	}
	290
b696414b	291	AliITSIntMap* possiblyDead = new AliITSIntMap();
6727e2db	292	AliITSIntMap* possiblyIneff = new AliITSIntMap();
	293
	294	fNrEnoughStatChips = 0;
	295	fNrDeadChips = 0;
	296	fNrInefficientChips = 0;
	297	UInt_t nrPossiblyDeadChips = 0;
	298	fNrEqHits = 0;
	299
6727e2db	300
b696414b	301	for (UInt_t hs=0; hs<6; hs++) {
478d804c	302	if (!fHandler->IsActiveHS(GetEqNr(),hs)) {
b696414b	303	fNrDeadChips+=10;
	304	}
	305	else {
	306	for (UInt_t chip=0; chip<10; chip++) {
478d804c	307	if (!fHandler->IsActiveChip(GetEqNr(),hs,chip)) {
b696414b	308	fNrDeadChips++;
	309	}
	310	else {
	311	// perform search for individual dead pixels...
b696414b	312	Bool_t good=kFALSE;
	313
	314	UInt_t nrPossiblyDeadPixels = 0;
	315	UInt_t nrPixels = 0;
	316	UInt_t nrChipHits = 0;
	317	for (UInt_t col=0; col<32; col++) {
	318	for (UInt_t row=0; row<256; row++) {
	319	UInt_t nrHits = fPhysObj->GetHits(hs,chip,col,row);
	320	nrChipHits += nrHits;
	321	if (!fHandler->IsPixelNoisy(GetEqNr(),hs,chip,col,row)) {
	322	// don't include noisy pixels
	323	nrPixels++;
	324	if (nrHits==0) {
	325	nrPossiblyDeadPixels++;
478d804c	326	}
	327	else {
	328	fHandler->UnSetDeadPixel(GetEqNr(),hs,chip,col,row); // unset (no action unless dead before)
b696414b	329	}
	330	}
	331	else {
	332	nrChipHits -= nrHits; // this is needed when running offline (online nrHits should be 0 already)
	333	}
6727e2db	334	}
6727e2db	335	}
b696414b	336	fNrEqHits+=nrChipHits;
b696414b	337
478d804c	338	if (nrChipHits>0) {
	339	// make sure the chip is not flagged as dead
	340	fHandler->SetDeadChip(GetEqNr(),hs,chip,kFALSE);
6727e2db	341	}
6727e2db	342
b696414b	343	if (nrPossiblyDeadPixels==0) {
	344	// no need to see if we have enough statistics...
	345	fNrEnoughStatChips++;
	346	good=kTRUE;
	347	// printf("%3d",good);
	348	// if (chip==9) printf("\n");
	349	continue;
	350	}
6727e2db	351
b696414b	352	if (nrChipHits==0) {
b696414b	353	nrPossiblyDeadChips++;
b696414b	354	possiblyDead->Insert(hs,chip);
	355	good=kFALSE;
	356	// printf("%3d",good);
	357	// if (chip==9) printf("\n");
	358	continue;
	359	}
6727e2db	360
b696414b	361	// Binomial with n events and probability p for pixel hit
	362	UInt_t n = GetNrEvents();
	363	if (nrPixels>0 && n>0) {
	364
	365	Double_t p = (Double_t)nrChipHits/nrPixels/n;
	366
	367	// probability of falsely assigning a dead pixel
38aa9b59	368	Double_t falselyDeadProb = pow((Double_t)(1-p),(Double_t)n);
ca837694	369	// printf("falselyprob=%e\n",falselyDeadProb);
	370
	371	// can we find dead pixels...?
	372	if (falselyDeadProb<fThreshDead) {
	373	fNrEnoughStatChips++;
	374	good=kTRUE;
	375	// add dead pixels to handler
	376	for (UInt_t col=0; col<32; col++) {
	377	for (UInt_t row=0; row<256; row++) {
	378	UInt_t nrHits = fPhysObj->GetHits(hs,chip,col,row);
	379	if (nrHits==0) {
478d804c	380	if (!fHandler->IsPixelNoisy(GetEqNr(),hs,chip,col,row)) {
478d804c	381	// don't include noisy pixels
ca837694	382	fHandler->SetDeadPixel(GetEqNr(),hs,chip,col,row);
478d804c	383	}
	384	}
	385	}
b696414b	386	}
	387	}
	388	if (!good) {
	389	// this might be an inefficient chip
	390	possiblyIneff->Insert(hs*10+chip,nrChipHits);
	391	}
6727e2db	392
b696414b	393	}
	394	else {
	395	if (n>0) {
	396	// this is a completely noisy chip... put in category enough stat
	397	fNrEnoughStatChips++;
	398	good=kTRUE;
	399	}
	400	}
6727e2db	401
b696414b	402	// printf("%3d",good);
b696414b	403	// if (chip==9) printf("\n");
6727e2db	404
6727e2db	405	}
b696414b	406	} // for chip
b696414b	407	}
6727e2db	408	} // for hs
b696414b	409
6727e2db	410
b696414b	411	Int_t key,val;
478d804c	412
6727e2db	413	// dead chips?
6727e2db	414	if (fNrEqHits>fMinNrEqHitsForDeadChips) {
b696414b	415	while (possiblyDead->Pop(key,val)) {
478d804c	416	fHandler->SetDeadChip(GetEqNr(),key,val,kFALSE);
b696414b	417	}
b696414b	418	fNrDeadChips+=nrPossiblyDeadChips;
6727e2db	419	}
b696414b	420	delete possiblyDead;
6727e2db	421
6727e2db	422	// inefficient chips?
6727e2db	423	while (possiblyIneff->Pop(key,val)) {
	424	if (val<fNrEqHits/60*fRatioToMeanForInefficientChip) {
	425	fNrInefficientChips++;
	426	}
	427	}
	428	delete possiblyIneff;
	429
	430
	431	fbDeadProcessed = kTRUE;
	432
	433	return fNrEnoughStatChips;
	434	}
	435
	436
	437	UInt_t AliITSOnlineSPDphysAnalyzer::GetNrEnoughStatChips() {
	438	// returns nr of enough stat chips
	439	if (!fbDeadProcessed) ProcessDeadPixels();
	440	return fNrEnoughStatChips;
	441	}
	442	UInt_t AliITSOnlineSPDphysAnalyzer::GetNrDeadChips() {
	443	// returns nr of dead chips
	444	if (!fbDeadProcessed) ProcessDeadPixels();
	445	return fNrDeadChips;
	446	}
	447	UInt_t AliITSOnlineSPDphysAnalyzer::GetNrInefficientChips() {
	448	// returns nr of inefficient chips
	449	if (!fbDeadProcessed) ProcessDeadPixels();
	450	return fNrInefficientChips;
	451	}
	452	UInt_t AliITSOnlineSPDphysAnalyzer::GetNrNeedsMoreStatChips() {
	453	// returns nr of needs more stat chips
	454	if (!fbDeadProcessed) ProcessDeadPixels();
	455	return 60-fNrEnoughStatChips-fNrDeadChips-fNrInefficientChips;
	456	}
	457
	458	UInt_t AliITSOnlineSPDphysAnalyzer::GetEqNr() const {
	459	// returns the eq nr of phys obj
	460	if (fPhysObj!=NULL) return fPhysObj->GetEqNr();
	461	else return 999;
	462	}
	463
	464	UInt_t AliITSOnlineSPDphysAnalyzer::GetNrEvents() const {
	465	// returns the nr of events of phys obj
	466	if (fPhysObj!=NULL) return fPhysObj->GetNrEvents();
	467	else return 0;
	468	}
	469
	470	void AliITSOnlineSPDphysAnalyzer::Exponent(Double_t &val, Int_t &valExp) const {
	471	// put double in format with val and exp so that 1<val<10 - The actual value is val*10e(valExp)
	472	while (val>10) {
	473	val/=10;
	474	valExp++;
	475	}
	476	while (val<1) {
	477	val*=10;
	478	valExp--;
	479	}
	480	}
	481
	482
	483
	484	TH2F* AliITSOnlineSPDphysAnalyzer::GetHitMapTot() {
	485	// creates and returns a pointer to a hitmap histo (half sector style a la spdmood)
	486	if (fPhysObj==NULL) {
487	Error("AliITSOnlineSPDphysAnalyzer::GetHitMapTot","No data!");
488	return NULL;
489	}
490	TString histoname = Form("Eq %d",GetEqNr());
491	TH2F* fHitMapTot = new TH2F(histoname.Data(),histoname.Data(),3210,-0.5,3210-0.5,2566,-0.5,2566-0.5);
492	fHitMapTot->SetNdivisions(-10,"X");
493	fHitMapTot->SetNdivisions(-006,"Y");
494	fHitMapTot->SetTickLength(0,"X");
495	fHitMapTot->SetTickLength(0,"Y");
496	fHitMapTot->GetXaxis()->SetLabelColor(gStyle->GetCanvasColor());
497	fHitMapTot->GetYaxis()->SetLabelColor(gStyle->GetCanvasColor());
498	for (UInt_t hs=0; hs<6; hs++) {
499	for (UInt_t chipNr=0; chipNr<10; chipNr++) {
500	for (UInt_t col=0; col<32; col++) {
501	for (UInt_t row=0; row<256; row++) {
502	fHitMapTot->Fill(chipNr32+col,(5-hs)256+row,fPhysObj->GetHits(hs,chipNr,col,row));
503	}
504	}
505	}
506	}
507	return fHitMapTot;
508	}
509
510	TH2F* AliITSOnlineSPDphysAnalyzer::GetHitMapChip(UInt_t hs, UInt_t chip) {
511	// creates and returns a pointer to a hitmap histo (chip style a la spdmood)
512	if (fPhysObj==NULL) {
513	Error("AliITSOnlineSPDphysAnalyzer::GetHitMapChip","No data!");
514	return NULL;
515	}
516
517	TString histoName;
518	TString histoTitle;
519	histoName = Form("fChipHisto_%d_%d_%d", GetEqNr(), hs, chip);
520	histoTitle = Form("Eq ID %d, Half Stave %d, Chip %d", GetEqNr(), hs, chip);
521
522	TH2F *returnHisto = new TH2F(histoName.Data(), histoTitle.Data(), 32, -0.5, 31.5, 256, -0.5, 255.5);
523	returnHisto->SetMinimum(0);
524	for (UInt_t col=0; col<32; col++) {
525	for (UInt_t row=0; row<256; row++) {
526	returnHisto->Fill(col,row,fPhysObj->GetHits(hs,chip,col,row));
527	}
528	}
529
530	return returnHisto;
531	}