[u/mrichter/AliRoot.git] / MUON / AliMUONPedestal.cxx

/**************************************************************************
* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
*                                                                        *
* Author: The ALICE Off-line Project.                                    * 
* Contributors are mentioned in the code where appropriate.              *
*                                                                        *
* Permission to use, copy, modify and distribute this software and its   *
* documentation strictly for non-commercial purposes is hereby granted   *
* without fee, provided that the above copyright notice appears in all   *
* copies and that both the copyright notice and this permission notice   *
* appear in the supporting documentation. The authors make no claims     *
* about the suitability of this software for any purpose. It is          *
* provided "as is" without express or implied warranty.                  *
**************************************************************************/

// $Id$

#include "AliMUONPedestal.h"
#include "AliMUONErrorCounter.h"
#include "AliMUONVStore.h"
#include "AliMUON2DMap.h"
#include "AliMUONCalibParamND.h"
#include "AliMpConstants.h"
#include <TString.h>
#include <TTimeStamp.h>
#include <TMath.h>
#include <TTree.h>
#include <TFile.h>
#include <TH1F.h>
#include <THashList.h>
#include <Riostream.h>

#include <sstream>

//-----------------------------------------------------------------------------
/// \class AliMUONPedestal
///
/// Implementation of the pedestal computing
///
/// add
/// 
///
/// \author Alberto Baldisseri, JL Charvet (05/05/2009)
//-----------------------------------------------------------------------------

/// \cond CLASSIMP
ClassImp(AliMUONPedestal)
/// \endcond

//______________________________________________________________________________
AliMUONPedestal::AliMUONPedestal()
: TObject(),
//fN(0),
fNCurrentEvents(0),
fNEvthreshold(0),
fSorting(0),
fNEvents(0),
fRunNumber(0),
fNChannel(0),
fNManu(0),
fNManuConfig(0),
fConfig(1),
fErrorBuspatchTable(new AliMUON2DMap(kFALSE)),
fManuBuspatchTable(new AliMUON2DMap(kFALSE)),
fManuBPoutofconfigTable(new AliMUON2DMap(kFALSE)),
fDate(new TTimeStamp()),
fFilcout(0),
fHistoFileName(),
fPedestalStore(new AliMUON2DMap(kTRUE)),
fIndex(-1),
fPrefixDA()
{
/// Default constructor
}

//______________________________________________________________________________
AliMUONPedestal::~AliMUONPedestal()
{
/// Destructor
  delete fErrorBuspatchTable;
  delete fManuBuspatchTable;
  delete fPedestalStore;
  delete fManuBPoutofconfigTable;
}

//______________________________________________________________________________
const char* 
AliMUONPedestal::GetHistoFileName() const
{
  /// Return the name of file we use to store histograms
  return fHistoFileName.Data();
}

//______________________________________________________________________________
void AliMUONPedestal::LoadConfig(const char* dbfile)
{
  /// Load MUONTRK configuration from ascii file "dbfile" (in DetDB)

  Int_t manuId;
  Int_t busPatchId;

  ifstream filein(dbfile,ios::in);
  
  while (!filein.eof())
    { 
      filein >> busPatchId >> manuId;

      AliMUONVCalibParam* ped = 
	static_cast<AliMUONVCalibParam*>(fPedestalStore ->FindObject(busPatchId, manuId));

      if (!ped) {
	fNManuConfig++;
	fNChannel+=64;
  ped = new AliMUONCalibParamND(2, AliMpConstants::ManuNofChannels(),busPatchId, manuId, -1.); // put default wise -1, not connected channel
	fPedestalStore ->Add(ped);  

        if ( ! fManuBuspatchTable->FindObject(busPatchId,manuId) )
	  {
	    // New (buspatch,manu)
	    AliMUONErrorCounter* manuCounter = new AliMUONErrorCounter(busPatchId,manuId);
	    fManuBuspatchTable->Add(manuCounter);
	  }
      }
    }
} 
//______________________________________________________________________________
void AliMUONPedestal::MakePed(Int_t busPatchId, Int_t manuId, Int_t channelId, Int_t charge)
{
  static Int_t warn=0;
  /// Compute pedestals values
  AliMUONVCalibParam* ped = 
    static_cast<AliMUONVCalibParam*>(fPedestalStore ->FindObject(busPatchId, manuId));

  if (!ped)   
    {
      if(fConfig) 
	{  // Fill out_of_config (buspatch,manu) table
	  if (!(static_cast<AliMUONErrorCounter*>(fManuBPoutofconfigTable->FindObject(busPatchId,manuId))))
	    fManuBPoutofconfigTable->Add(new AliMUONErrorCounter(busPatchId,manuId));
	  if(warn<10) cout << " !!! WARNING  : busPatchId = " << busPatchId << " manuId = " << manuId << " not in the Detector configuration " << endl;
	  else if(warn==10) cout << " !!! see .log file for an exhaustive list of (busPatchId, manuId) out of Detector configuration \n" << endl; 
	   warn++;
	   (*fFilcout) << " !!! WARNING  : busPatchId = " << busPatchId << " manuId = " << manuId << " not in the Detector configuration " << endl; 
	}
      else {fNManu++;}
      fNChannel+=64;
      // put default wise -1, not connected channel
      ped = new AliMUONCalibParamND(2, AliMpConstants::ManuNofChannels(),busPatchId, manuId, -1.); 
      fPedestalStore ->Add(ped);  
    }

  // Initialization for the first value
  if (ped->ValueAsDouble(channelId, 0) == -1)  
    { 
      if(fConfig && channelId == 0){fNManu++;}
      ped->SetValueAsDouble(channelId, 0, 0.);
    }
  if (ped->ValueAsDouble(channelId, 1) == -1) ped->SetValueAsDouble(channelId, 1, 0.);

  Double_t pedMean  = ped->ValueAsDouble(channelId, 0) + (Double_t) charge;
  Double_t pedSigma = ped->ValueAsDouble(channelId, 1) + (Double_t) charge*charge;

  ped->SetValueAsDouble(channelId, 0, pedMean);
  ped->SetValueAsDouble(channelId, 1, pedSigma);

  AliMUONErrorCounter* manuCounter;
  if (!(manuCounter = static_cast<AliMUONErrorCounter*>(fManuBuspatchTable->FindObject(busPatchId,manuId))))
    {
      // New (buspatch,manu)
      manuCounter = new AliMUONErrorCounter(busPatchId,manuId);
      fManuBuspatchTable->Add(manuCounter);
    }
  else
    {
      // Existing buspatch
      manuCounter->Increment();
    }	
}
//______________________________________________________________________________
void AliMUONPedestal::Finalize()
{
  /// final polishing of the store
  
  Double_t pedMean;
  Double_t pedSigma;
  Double_t pedSigmalimit=0.5;
  Int_t busPatchId;
  Int_t manuId;
  Int_t channelId;

  // print in logfile
  if (fErrorBuspatchTable->GetSize())
    {
      cout<<"\nWarning: Buspatches with less statistics (due to parity errors)"<<endl;
      (*fFilcout)<<"\nWarning: Buspatches with less statistics (due to parity errors)"<<endl;
      TIter nextParityError(fErrorBuspatchTable->CreateIterator());
      AliMUONErrorCounter* parityerror;
      while((parityerror = static_cast<AliMUONErrorCounter*>(nextParityError())))
	{
	  cout<<"  bp "<<parityerror->BusPatch()<<": events used = "<<fNEvents-parityerror->Events()<<endl;
	  (*fFilcout)<<"  bp "<<parityerror->BusPatch()<<": events used = "<<fNEvents-parityerror->Events()<<endl;
	}
    }

  Int_t nADC4090=0;
  Int_t nADCmax=0;
  // iterator over pedestal
  TIter next(fPedestalStore ->CreateIterator());
  AliMUONVCalibParam* ped;

  while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
    {
      busPatchId              = ped->ID0();
      manuId                  = ped->ID1();
      if(manuId==0)
	{
	  cout << "Warning: ManuId = " << manuId << " !!! in  BP = " << busPatchId << endl;
	  (*fFilcout) << "Warning: ManuId = " << manuId << " !!! in  BP = " << busPatchId << endl;
	}
      Int_t eventCounter;
      // Correct the number of events for buspatch with errors
      AliMUONErrorCounter* errorCounter;
      if ((errorCounter = (AliMUONErrorCounter*)fErrorBuspatchTable->FindObject(busPatchId)))
	{
	  eventCounter = fNEvents - errorCounter->Events();
	}
      else
	{
	  eventCounter = fNEvents;
	}
      Int_t occupancy=0; // channel missing in raw data or read but rejected (case of parity error)
      // value of (buspatch, manu) occupancy
      AliMUONErrorCounter* manuCounter;
      manuCounter = static_cast<AliMUONErrorCounter*>(fManuBuspatchTable->FindObject(busPatchId,manuId));
      if(eventCounter>0)occupancy = manuCounter->Events()/64/eventCounter;
      if(occupancy>1)
	{
	  cout << "Warning: ManuId = " << manuId << " !!! in  BP = " << busPatchId << " occupancy (>1) = " << occupancy << endl;
	  (*fFilcout) << "Warning: ManuId = " << manuId << " !!! in  BP = " << busPatchId << " occupancy (>1) = " << occupancy <<endl;
	}

      for (channelId = 0; channelId < ped->Size() ; ++channelId) 
	{
 	  pedMean  = ped->ValueAsDouble(channelId, 0);

	  if (pedMean >= 0) // connected channels
	    {
	      ped->SetValueAsDouble(channelId, 0, pedMean/(Double_t)eventCounter);
	      pedMean  = ped->ValueAsDouble(channelId, 0);
	      pedSigma = ped->ValueAsDouble(channelId, 1);
 	      ped->SetValueAsDouble(channelId, 1, TMath::Sqrt(TMath::Abs(pedSigma/(Double_t)eventCounter - pedMean*pedMean)));

	      if(eventCounter < fNEvthreshold )
		{ nADCmax++; ped->SetValueAsDouble(channelId, 0, ADCMax());
		  ped->SetValueAsDouble(channelId, 1, ADCMax());}
	      if( ped->ValueAsDouble(channelId, 1) < pedSigmalimit )
		{ nADC4090++; ped->SetValueAsDouble(channelId, 0, ADCMax()-5);
		  ped->SetValueAsDouble(channelId, 1, ADCMax()-5);}
	      if(manuId == 0 || occupancy>1)
		{ nADCmax++; ped->SetValueAsDouble(channelId, 0, ADCMax());
		  ped->SetValueAsDouble(channelId, 1, ADCMax());
		  if(occupancy>1 && channelId==0)ped->SetValueAsDouble(channelId, 0, ADCMax()+occupancy);}
	    }
	  else
	    { nADCmax++; ped->SetValueAsDouble(channelId, 0, ADCMax());
	      ped->SetValueAsDouble(channelId, 1, ADCMax());}
	}
    }
  if(nADCmax>0)
    { char* detail=Form("Warning: Nb of Channels with bad Pedestal (Ped=4095) = %d over %d",nADCmax,fNChannel);
      printf("%s\n",detail);
      (*fFilcout) <<  detail << endl; }
  if(nADC4090>0)
    { char* detail=Form("Warning: Nb of Channels with PedSigma<0.5 (Ped=4090) = %d over %d",nADC4090,fNChannel);
      printf("%s\n",detail);
      (*fFilcout) <<  detail << endl; }
}
//______________________________________________________________________________
void AliMUONPedestal::MakeASCIIoutput(ostream& out) const
{
  /// put pedestal store in the output stream

  out<<"//===========================================================================" << endl;
  out<<"//                 Pedestal file calculated by "<< fPrefixDA.Data() << endl;
  out<<"//===========================================================================" << endl;
  out<<"//     * Run           : " << fRunNumber << endl; 
  out<<"//     * Date          : " << fDate->AsString("l") <<endl;
  out<<"//     * Statictics    : " << fNEvents << endl;
  if(fConfig)
    out<<"//     * Nb of MANUS   : " << fNManuConfig << " read in the Det. config. " << endl;
  out<<"//     * Nb of MANUS   : " << fNManu << " read in raw data " << endl;
  out<<"//     * Nb of MANUS   : " << fNChannel/64 << " written in pedestal file " << endl;
  out<<"//     * Nb of channels: " << fNChannel << endl;
  out<<"//"<<endl;
  out<<"//     * Below " << fNEvthreshold << " events=> Ped.&sig.=4095" << endl;
  out<<"//     * PedSigma < 0.5 => Ped.&sig.=4090" << endl;

  if (fErrorBuspatchTable->GetSize())
    {
      out<<"//"<<endl;
      out<<"//    * Buspatches with less statistics (due to parity errors)"<<endl;
      TIter next(fErrorBuspatchTable->CreateIterator());
      AliMUONErrorCounter* parityerror;
      while((parityerror = static_cast<AliMUONErrorCounter*>(next())))
	{
	  if(fNEvents-parityerror->Events()>fNEvthreshold)
	    { out<<"//      BusPatch = "<<parityerror->BusPatch()<<"\t Nevents used = "<<fNEvents-parityerror->Events()<<endl; }
	  else
	    { out<<"//      BusPatch = "<<parityerror->BusPatch()<<"\t Nevents used = "<<fNEvents-parityerror->Events()<< " (Ped.&sig.=4095)" << endl; }
	}
    }  
  Int_t writitle=0;
  Int_t occupancy=1;
  if(occupancy)
    {
      TIter next(fPedestalStore ->CreateIterator());
      AliMUONVCalibParam* ped;
      while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
	{
	  Int_t busPatchId = ped->ID0();
	  Int_t manuId = ped->ID1();
	  Double_t pedMean  = ped->ValueAsDouble(0, 0); // check pedestal value for channelId=0

	  if(pedMean>ADCMax()) 
	    {
	      writitle++;
	      if(writitle==1){ 
		out<<"//"<<endl;
		out<<"//    * Puzzling (Buspatch,Manu) read in raw data ? (Ped.&sig.=4095)"<<endl;}
	      occupancy=TMath::Nint(pedMean-ADCMax());
	      ped->SetValueAsDouble(0, 0, ADCMax());
	      out<<"//      BusPatch = "<< busPatchId <<"\t ManuId =  "<< manuId << "\t occupancy = " << occupancy  << endl;
	    }

	  if (manuId==0 || (fConfig && static_cast<AliMUONErrorCounter*>(fManuBPoutofconfigTable->FindObject(busPatchId,manuId))))
	    {
	      writitle++;
	      if(writitle==1){ 
		out<<"//"<<endl;
		out<<"//    * Puzzling (Buspatch,Manu) read in raw data ? (Ped.&sig.=4095)"<<endl;}
	      out<<"//      BusPatch = "<< busPatchId <<"\t ManuId =  "<< manuId << "\t missing in the mapping" << endl;
	    }
	}
    }
  out<<"//"<<endl;
  out<<"//---------------------------------------------------------------------------" << endl;
  out<<"//---------------------------------------------------------------------------" << endl;
  out<<"//      BP     MANU     CH.      MEAN    SIGMA"<<endl;
  out<<"//---------------------------------------------------------------------------" << endl;

  TIter next(fPedestalStore->CreateIterator());
  AliMUONVCalibParam* ped;  

  // Sorting 
  if  (fSorting)
    {
      cout << " ..... sorting pedestal values ....."  << endl;
      THashList pedtable(100,2);
      while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
      {
        pedtable.Add(ped);
      }
      pedtable.Sort();
      //      iterator over sorted pedestal
      TIter nextSorted(&pedtable);
      while ( (ped = (AliMUONVCalibParam*)(nextSorted()) ) )
      {
        Int_t busPatchId = ped->ID0();
        Int_t manuId = ped->ID1();
        for ( Int_t channelId = 0; channelId < ped->Size(); ++channelId ) 
        {
          Double_t pedMean  = ped->ValueAsDouble(channelId, 0);
          Double_t pedSigma = ped->ValueAsDouble(channelId, 1);
          out << "\t" << busPatchId << "\t" << manuId <<"\t"<< channelId << "\t" << pedMean <<"\t"<< pedSigma << endl;
        }
      }
    }
  else
    {
      while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
	{
	  Int_t busPatchId = ped->ID0();
	  Int_t manuId = ped->ID1();
	  for ( Int_t channelId = 0; channelId < ped->Size(); ++channelId ) 
	    {
	      Double_t pedMean  = ped->ValueAsDouble(channelId, 0);
	      Double_t pedSigma = ped->ValueAsDouble(channelId, 1);
	      out << "\t" << busPatchId << "\t" << manuId <<"\t"<< channelId << "\t" << pedMean <<"\t"<< pedSigma << endl;
	    }
	}
    }
}

//______________________________________________________________________________
void AliMUONPedestal::MakeControlHistos()
{
  /// Create control histograms
  if (fIndex>=0) return; // Pedestal run (fIndex=-1)

  Double_t pedMean;
  Double_t pedSigma;
  Double_t evt;
  Int_t busPatchId;
  Int_t manuId;
  Int_t channelId;

// histo
  TFile*  histoFile = 0;
  TTree* tree = 0;
  TH1F* pedMeanHisto = 0;
  TH1F* pedSigmaHisto = 0;
    
  fHistoFileName=Form("%s.root",fPrefixDA.Data());
  histoFile = new TFile(fHistoFileName,"RECREATE","MUON Tracking pedestals");

  Int_t nx = ADCMax()+1;
  Int_t xmin = 0;
  Int_t xmax = ADCMax(); 
  pedMeanHisto = new TH1F("pedmean_allch","Pedestal mean all channels",nx,xmin,xmax);
  pedMeanHisto->SetDirectory(histoFile);

  nx = 201;
  xmin = 0;
  xmax = 200; 
  pedSigmaHisto = new TH1F("pedsigma_allch","Pedestal sigma all channels",nx,xmin,xmax);
  pedSigmaHisto->SetDirectory(histoFile);

  tree = new TTree("t","Pedestal tree");
  tree->Branch("bp",&busPatchId,"bp/I");
  tree->Branch("manu",&manuId,",manu/I");
  tree->Branch("channel",&channelId,",channel/I");
  tree->Branch("pedMean",&pedMean,",pedMean/D");
  tree->Branch("pedSigma",&pedSigma,",pedSigma/D");
  tree->Branch("nevt",&evt,",evt/D");

  // iterator over pedestal
  TIter next(fPedestalStore ->CreateIterator());
  AliMUONVCalibParam* ped;
  AliMUONErrorCounter* manuCounter;
  
  while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
  {
    busPatchId = ped->ID0();
    manuId = ped->ID1();
    
    for ( channelId = 0; channelId < ped->Size(); ++channelId ) 
    {
      pedMean  = ped->ValueAsDouble(channelId, 0);
      pedSigma = ped->ValueAsDouble(channelId, 1);
      manuCounter = static_cast<AliMUONErrorCounter*>(fManuBuspatchTable->FindObject(busPatchId,manuId));
      evt = manuCounter->Events()/64;
          
      pedMeanHisto->Fill(pedMean);
      pedSigmaHisto->Fill(pedSigma);
      tree->Fill();  
    }
  }
    
  histoFile->Write();  
  histoFile->Close(); 

}
Commit	Line	Data
5253c153	1	/**************************************************************************
	2	* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
	3	* *
	4	* Author: The ALICE Off-line Project. *
	5	* Contributors are mentioned in the code where appropriate. *
	6	* *
	7	* Permission to use, copy, modify and distribute this software and its *
	8	* documentation strictly for non-commercial purposes is hereby granted *
	9	* without fee, provided that the above copyright notice appears in all *
	10	* copies and that both the copyright notice and this permission notice *
	11	* appear in the supporting documentation. The authors make no claims *
	12	* about the suitability of this software for any purpose. It is *
	13	* provided "as is" without express or implied warranty. *
	14	**************************************************************************/
	15
	16	// $Id$
	17
	18	#include "AliMUONPedestal.h"
	19	#include "AliMUONErrorCounter.h"
	20	#include "AliMUONVStore.h"
	21	#include "AliMUON2DMap.h"
	22	#include "AliMUONCalibParamND.h"
f3cfa63e	23	#include "AliMpConstants.h"
5253c153	24	#include <TString.h>
5253c153	25	#include <TTimeStamp.h>
	26	#include <TMath.h>
	27	#include <TTree.h>
	28	#include <TFile.h>
	29	#include <TH1F.h>
ff496840	30	#include <THashList.h>
5253c153	31	#include <Riostream.h>
	32
	33	#include <sstream>
	34
	35	//-----------------------------------------------------------------------------
	36	/// \class AliMUONPedestal
	37	///
	38	/// Implementation of the pedestal computing
	39	///
	40	/// add
	41	///
	42	///
	43	/// \author Alberto Baldisseri, JL Charvet (05/05/2009)
	44	//-----------------------------------------------------------------------------
	45
	46	/// \cond CLASSIMP
	47	ClassImp(AliMUONPedestal)
	48	/// \endcond
	49
	50	//______________________________________________________________________________
	51	AliMUONPedestal::AliMUONPedestal()
	52	: TObject(),
f3cfa63e	53	//fN(0),
f9e83f1d	54	fNCurrentEvents(0),
f9e83f1d	55	fNEvthreshold(0),
ff496840	56	fSorting(0),
5253c153	57	fNEvents(0),
	58	fRunNumber(0),
	59	fNChannel(0),
	60	fNManu(0),
f3cfa63e	61	fNManuConfig(0),
d9e6dc5e	62	fConfig(1),
a54854fc	63	fErrorBuspatchTable(new AliMUON2DMap(kFALSE)),
a54854fc	64	fManuBuspatchTable(new AliMUON2DMap(kFALSE)),
1b15b395	65	fManuBPoutofconfigTable(new AliMUON2DMap(kFALSE)),
5253c153	66	fDate(new TTimeStamp()),
5253c153	67	fFilcout(0),
f3cfa63e	68	fHistoFileName(),
a54854fc	69	fPedestalStore(new AliMUON2DMap(kTRUE)),
f3cfa63e	70	fIndex(-1),
f3cfa63e	71	fPrefixDA()
5253c153	72	{
5253c153	73	/// Default constructor
5253c153	74	}
5253c153	75
	76	//______________________________________________________________________________
	77	AliMUONPedestal::~AliMUONPedestal()
	78	{
	79	/// Destructor
a54854fc	80	delete fErrorBuspatchTable;
a54854fc	81	delete fManuBuspatchTable;
dbbb2c64	82	delete fPedestalStore;
1b15b395	83	delete fManuBPoutofconfigTable;
5253c153	84	}
5253c153	85
1b15b395	86	//______________________________________________________________________________
f3cfa63e	87	const char*
	88	AliMUONPedestal::GetHistoFileName() const
	89	{
	90	/// Return the name of file we use to store histograms
	91	return fHistoFileName.Data();
	92	}
	93
	94	//______________________________________________________________________________
	95	void AliMUONPedestal::LoadConfig(const char* dbfile)
1b15b395	96	{
	97	/// Load MUONTRK configuration from ascii file "dbfile" (in DetDB)
	98
	99	Int_t manuId;
	100	Int_t busPatchId;
	101
f3cfa63e	102	ifstream filein(dbfile,ios::in);
f3cfa63e	103
f3cfa63e	104	while (!filein.eof())
1b15b395	105	{
f3cfa63e	106	filein >> busPatchId >> manuId;
1b15b395	107
1b15b395	108	AliMUONVCalibParam* ped =
	109	static_cast<AliMUONVCalibParam*>(fPedestalStore ->FindObject(busPatchId, manuId));
	110
	111	if (!ped) {
f3cfa63e	112	fNManuConfig++;
1b15b395	113	fNChannel+=64;
f3cfa63e	114	ped = new AliMUONCalibParamND(2, AliMpConstants::ManuNofChannels(),busPatchId, manuId, -1.); // put default wise -1, not connected channel
1b15b395	115	fPedestalStore ->Add(ped);
1b15b395	116
065a2d7d	117	if ( ! fManuBuspatchTable->FindObject(busPatchId,manuId) )
1b15b395	118	{
1b15b395	119	// New (buspatch,manu)
065a2d7d	120	AliMUONErrorCounter* manuCounter = new AliMUONErrorCounter(busPatchId,manuId);
1b15b395	121	fManuBuspatchTable->Add(manuCounter);
	122	}
	123	}
	124	}
	125	}
5253c153	126	//______________________________________________________________________________
	127	void AliMUONPedestal::MakePed(Int_t busPatchId, Int_t manuId, Int_t channelId, Int_t charge)
	128	{
b9c33bca	129	static Int_t warn=0;
5253c153	130	/// Compute pedestals values
	131	AliMUONVCalibParam* ped =
	132	static_cast<AliMUONVCalibParam*>(fPedestalStore ->FindObject(busPatchId, manuId));
	133
1b15b395	134	if (!ped)
	135	{
	136	if(fConfig)
	137	{ // Fill out_of_config (buspatch,manu) table
	138	if (!(static_cast<AliMUONErrorCounter*>(fManuBPoutofconfigTable->FindObject(busPatchId,manuId))))
	139	fManuBPoutofconfigTable->Add(new AliMUONErrorCounter(busPatchId,manuId));
b9c33bca	140	if(warn<10) cout << " !!! WARNING : busPatchId = " << busPatchId << " manuId = " << manuId << " not in the Detector configuration " << endl;
	141	else if(warn==10) cout << " !!! see .log file for an exhaustive list of (busPatchId, manuId) out of Detector configuration \n" << endl;
	142	warn++;
	143	(*fFilcout) << " !!! WARNING : busPatchId = " << busPatchId << " manuId = " << manuId << " not in the Detector configuration " << endl;
1b15b395	144	}
	145	else {fNManu++;}
	146	fNChannel+=64;
	147	// put default wise -1, not connected channel
f3cfa63e	148	ped = new AliMUONCalibParamND(2, AliMpConstants::ManuNofChannels(),busPatchId, manuId, -1.);
1b15b395	149	fPedestalStore ->Add(ped);
1b15b395	150	}
5253c153	151
5253c153	152	// Initialization for the first value
1b15b395	153	if (ped->ValueAsDouble(channelId, 0) == -1)
	154	{
	155	if(fConfig && channelId == 0){fNManu++;}
	156	ped->SetValueAsDouble(channelId, 0, 0.);
	157	}
5253c153	158	if (ped->ValueAsDouble(channelId, 1) == -1) ped->SetValueAsDouble(channelId, 1, 0.);
	159
	160	Double_t pedMean = ped->ValueAsDouble(channelId, 0) + (Double_t) charge;
	161	Double_t pedSigma = ped->ValueAsDouble(channelId, 1) + (Double_t) charge*charge;
	162
	163	ped->SetValueAsDouble(channelId, 0, pedMean);
	164	ped->SetValueAsDouble(channelId, 1, pedSigma);
5431405e	165
5431405e	166	AliMUONErrorCounter* manuCounter;
a54854fc	167	if (!(manuCounter = static_cast<AliMUONErrorCounter*>(fManuBuspatchTable->FindObject(busPatchId,manuId))))
5431405e	168	{
	169	// New (buspatch,manu)
	170	manuCounter = new AliMUONErrorCounter(busPatchId,manuId);
a54854fc	171	fManuBuspatchTable->Add(manuCounter);
5431405e	172	}
	173	else
	174	{
	175	// Existing buspatch
	176	manuCounter->Increment();
	177	}
5253c153	178	}
5253c153	179	//______________________________________________________________________________
dbbb2c64	180	void AliMUONPedestal::Finalize()
5253c153	181	{
f3cfa63e	182	/// final polishing of the store
f3cfa63e	183
5253c153	184	Double_t pedMean;
5253c153	185	Double_t pedSigma;
f9e83f1d	186	Double_t pedSigmalimit=0.5;
5253c153	187	Int_t busPatchId;
	188	Int_t manuId;
	189	Int_t channelId;
	190
5253c153	191	// print in logfile
5253c153	192	if (fErrorBuspatchTable->GetSize())
5253c153	193	{
f9e83f1d	194	cout<<"\nWarning: Buspatches with less statistics (due to parity errors)"<<endl;
f9e83f1d	195	(*fFilcout)<<"\nWarning: Buspatches with less statistics (due to parity errors)"<<endl;
1b15b395	196	TIter nextParityError(fErrorBuspatchTable->CreateIterator());
	197	AliMUONErrorCounter* parityerror;
	198	while((parityerror = static_cast<AliMUONErrorCounter*>(nextParityError())))
	199	{
	200	cout<<" bp "<<parityerror->BusPatch()<<": events used = "<<fNEvents-parityerror->Events()<<endl;
	201	(*fFilcout)<<" bp "<<parityerror->BusPatch()<<": events used = "<<fNEvents-parityerror->Events()<<endl;
	202	}
5253c153	203	}
5253c153	204
f9e83f1d	205	Int_t nADC4090=0;
f9e83f1d	206	Int_t nADCmax=0;
1b15b395	207	// iterator over pedestal
5253c153	208	TIter next(fPedestalStore ->CreateIterator());
	209	AliMUONVCalibParam* ped;
	210
	211	while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
dbbb2c64	212	{
1b15b395	213	busPatchId = ped->ID0();
	214	manuId = ped->ID1();
	215	if(manuId==0)
	216	{
f9e83f1d	217	cout << "Warning: ManuId = " << manuId << " !!! in BP = " << busPatchId << endl;
f9e83f1d	218	(*fFilcout) << "Warning: ManuId = " << manuId << " !!! in BP = " << busPatchId << endl;
1b15b395	219	}
	220	Int_t eventCounter;
	221	// Correct the number of events for buspatch with errors
	222	AliMUONErrorCounter* errorCounter;
	223	if ((errorCounter = (AliMUONErrorCounter*)fErrorBuspatchTable->FindObject(busPatchId)))
	224	{
	225	eventCounter = fNEvents - errorCounter->Events();
	226	}
	227	else
	228	{
	229	eventCounter = fNEvents;
	230	}
1b15b395	231	Int_t occupancy=0; // channel missing in raw data or read but rejected (case of parity error)
	232	// value of (buspatch, manu) occupancy
	233	AliMUONErrorCounter* manuCounter;
	234	manuCounter = static_cast<AliMUONErrorCounter*>(fManuBuspatchTable->FindObject(busPatchId,manuId));
	235	if(eventCounter>0)occupancy = manuCounter->Events()/64/eventCounter;
	236	if(occupancy>1)
	237	{
f9e83f1d	238	cout << "Warning: ManuId = " << manuId << " !!! in BP = " << busPatchId << " occupancy (>1) = " << occupancy << endl;
f9e83f1d	239	(*fFilcout) << "Warning: ManuId = " << manuId << " !!! in BP = " << busPatchId << " occupancy (>1) = " << occupancy <<endl;
1b15b395	240	}
5253c153	241
1b15b395	242	for (channelId = 0; channelId < ped->Size() ; ++channelId)
1b15b395	243	{
f9e83f1d	244	pedMean = ped->ValueAsDouble(channelId, 0);
1b15b395	245
f9e83f1d	246	if (pedMean >= 0) // connected channels
1b15b395	247	{
	248	ped->SetValueAsDouble(channelId, 0, pedMean/(Double_t)eventCounter);
	249	pedMean = ped->ValueAsDouble(channelId, 0);
	250	pedSigma = ped->ValueAsDouble(channelId, 1);
f9e83f1d	251	ped->SetValueAsDouble(channelId, 1, TMath::Sqrt(TMath::Abs(pedSigma/(Double_t)eventCounter - pedMean*pedMean)));
	252
	253	if(eventCounter < fNEvthreshold )
	254	{ nADCmax++; ped->SetValueAsDouble(channelId, 0, ADCMax());
	255	ped->SetValueAsDouble(channelId, 1, ADCMax());}
	256	if( ped->ValueAsDouble(channelId, 1) < pedSigmalimit )
	257	{ nADC4090++; ped->SetValueAsDouble(channelId, 0, ADCMax()-5);
	258	ped->SetValueAsDouble(channelId, 1, ADCMax()-5);}
	259	if(manuId == 0 \|\| occupancy>1)
	260	{ nADCmax++; ped->SetValueAsDouble(channelId, 0, ADCMax());
f3cfa63e	261	ped->SetValueAsDouble(channelId, 1, ADCMax());
f9e83f1d	262	if(occupancy>1 && channelId==0)ped->SetValueAsDouble(channelId, 0, ADCMax()+occupancy);}
1b15b395	263	}
1b15b395	264	else
f9e83f1d	265	{ nADCmax++; ped->SetValueAsDouble(channelId, 0, ADCMax());
f9e83f1d	266	ped->SetValueAsDouble(channelId, 1, ADCMax());}
1b15b395	267	}
dbbb2c64	268	}
f9e83f1d	269	if(nADCmax>0)
	270	{ char* detail=Form("Warning: Nb of Channels with bad Pedestal (Ped=4095) = %d over %d",nADCmax,fNChannel);
	271	printf("%s\n",detail);
	272	(*fFilcout) << detail << endl; }
	273	if(nADC4090>0)
	274	{ char* detail=Form("Warning: Nb of Channels with PedSigma<0.5 (Ped=4090) = %d over %d",nADC4090,fNChannel);
	275	printf("%s\n",detail);
	276	(*fFilcout) << detail << endl; }
dbbb2c64	277	}
dbbb2c64	278	//______________________________________________________________________________
	279	void AliMUONPedestal::MakeASCIIoutput(ostream& out) const
	280	{
1b15b395	281	/// put pedestal store in the output stream
dbbb2c64	282
dbbb2c64	283	out<<"//===========================================================================" << endl;
f3cfa63e	284	out<<"// Pedestal file calculated by "<< fPrefixDA.Data() << endl;
dbbb2c64	285	out<<"//===========================================================================" << endl;
f9e83f1d	286	out<<"// * Run : " << fRunNumber << endl;
	287	out<<"// * Date : " << fDate->AsString("l") <<endl;
	288	out<<"// * Statictics : " << fNEvents << endl;
1b15b395	289	if(fConfig)
f9e83f1d	290	out<<"// * Nb of MANUS : " << fNManuConfig << " read in the Det. config. " << endl;
	291	out<<"// * Nb of MANUS : " << fNManu << " read in raw data " << endl;
	292	out<<"// * Nb of MANUS : " << fNChannel/64 << " written in pedestal file " << endl;
	293	out<<"// * Nb of channels: " << fNChannel << endl;
	294	out<<"//"<<endl;
	295	out<<"// * Below " << fNEvthreshold << " events=> Ped.&sig.=4095" << endl;
	296	out<<"// * PedSigma < 0.5 => Ped.&sig.=4090" << endl;
	297
dbbb2c64	298	if (fErrorBuspatchTable->GetSize())
dbbb2c64	299	{
1b15b395	300	out<<"//"<<endl;
	301	out<<"// * Buspatches with less statistics (due to parity errors)"<<endl;
	302	TIter next(fErrorBuspatchTable->CreateIterator());
	303	AliMUONErrorCounter* parityerror;
	304	while((parityerror = static_cast<AliMUONErrorCounter*>(next())))
	305	{
f9e83f1d	306	if(fNEvents-parityerror->Events()>fNEvthreshold)
	307	{ out<<"// BusPatch = "<<parityerror->BusPatch()<<"\t Nevents used = "<<fNEvents-parityerror->Events()<<endl; }
	308	else
	309	{ out<<"// BusPatch = "<<parityerror->BusPatch()<<"\t Nevents used = "<<fNEvents-parityerror->Events()<< " (Ped.&sig.=4095)" << endl; }
1b15b395	310	}
1b15b395	311	}
f3cfa63e	312	Int_t writitle=0;
	313	Int_t occupancy=1;
	314	if(occupancy)
1b15b395	315	{
f3cfa63e	316	TIter next(fPedestalStore ->CreateIterator());
	317	AliMUONVCalibParam* ped;
	318	while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
1b15b395	319	{
f3cfa63e	320	Int_t busPatchId = ped->ID0();
	321	Int_t manuId = ped->ID1();
	322	Double_t pedMean = ped->ValueAsDouble(0, 0); // check pedestal value for channelId=0
1b15b395	323
f3cfa63e	324	if(pedMean>ADCMax())
	325	{
	326	writitle++;
	327	if(writitle==1){
	328	out<<"//"<<endl;
f9e83f1d	329	out<<"// * Puzzling (Buspatch,Manu) read in raw data ? (Ped.&sig.=4095)"<<endl;}
1ccd531d	330	occupancy=TMath::Nint(pedMean-ADCMax());
f3cfa63e	331	ped->SetValueAsDouble(0, 0, ADCMax());
f9e83f1d	332	out<<"// BusPatch = "<< busPatchId <<"\t ManuId = "<< manuId << "\t occupancy = " << occupancy << endl;
f3cfa63e	333	}
	334
	335	if (manuId==0 \|\| (fConfig && static_cast<AliMUONErrorCounter*>(fManuBPoutofconfigTable->FindObject(busPatchId,manuId))))
	336	{
	337	writitle++;
	338	if(writitle==1){
	339	out<<"//"<<endl;
f9e83f1d	340	out<<"// * Puzzling (Buspatch,Manu) read in raw data ? (Ped.&sig.=4095)"<<endl;}
f3cfa63e	341	out<<"// BusPatch = "<< busPatchId <<"\t ManuId = "<< manuId << "\t missing in the mapping" << endl;
f3cfa63e	342	}
1b15b395	343	}
dbbb2c64	344	}
dbbb2c64	345	out<<"//"<<endl;
	346	out<<"//---------------------------------------------------------------------------" << endl;
	347	out<<"//---------------------------------------------------------------------------" << endl;
	348	out<<"// BP MANU CH. MEAN SIGMA"<<endl;
	349	out<<"//---------------------------------------------------------------------------" << endl;
5253c153	350
ff496840	351	TIter next(fPedestalStore->CreateIterator());
ff496840	352	AliMUONVCalibParam* ped;
1b15b395	353
ff496840	354	// Sorting
	355	if (fSorting)
	356	{
	357	cout << " ..... sorting pedestal values ....." << endl;
	358	THashList pedtable(100,2);
	359	while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
	360	{
	361	pedtable.Add(ped);
	362	}
	363	pedtable.Sort();
	364	// iterator over sorted pedestal
	365	TIter nextSorted(&pedtable);
	366	while ( (ped = (AliMUONVCalibParam*)(nextSorted()) ) )
	367	{
	368	Int_t busPatchId = ped->ID0();
	369	Int_t manuId = ped->ID1();
	370	for ( Int_t channelId = 0; channelId < ped->Size(); ++channelId )
	371	{
	372	Double_t pedMean = ped->ValueAsDouble(channelId, 0);
	373	Double_t pedSigma = ped->ValueAsDouble(channelId, 1);
	374	out << "\t" << busPatchId << "\t" << manuId <<"\t"<< channelId << "\t" << pedMean <<"\t"<< pedSigma << endl;
	375	}
	376	}
	377	}
	378	else
	379	{
	380	while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
1b15b395	381	{
ff496840	382	Int_t busPatchId = ped->ID0();
	383	Int_t manuId = ped->ID1();
	384	for ( Int_t channelId = 0; channelId < ped->Size(); ++channelId )
	385	{
	386	Double_t pedMean = ped->ValueAsDouble(channelId, 0);
	387	Double_t pedSigma = ped->ValueAsDouble(channelId, 1);
	388	out << "\t" << busPatchId << "\t" << manuId <<"\t"<< channelId << "\t" << pedMean <<"\t"<< pedSigma << endl;
	389	}
1b15b395	390	}
5253c153	391	}
dbbb2c64	392	}
	393
	394	//______________________________________________________________________________
	395	void AliMUONPedestal::MakeControlHistos()
	396	{
f3cfa63e	397	/// Create control histograms
dbbb2c64	398	if (fIndex>=0) return; // Pedestal run (fIndex=-1)
	399
	400	Double_t pedMean;
	401	Double_t pedSigma;
f9e83f1d	402	Double_t evt;
dbbb2c64	403	Int_t busPatchId;
	404	Int_t manuId;
	405	Int_t channelId;
	406
	407	// histo
	408	TFile* histoFile = 0;
	409	TTree* tree = 0;
	410	TH1F* pedMeanHisto = 0;
	411	TH1F* pedSigmaHisto = 0;
	412
f3cfa63e	413	fHistoFileName=Form("%s.root",fPrefixDA.Data());
dbbb2c64	414	histoFile = new TFile(fHistoFileName,"RECREATE","MUON Tracking pedestals");
dbbb2c64	415
f3cfa63e	416	Int_t nx = ADCMax()+1;
dbbb2c64	417	Int_t xmin = 0;
f3cfa63e	418	Int_t xmax = ADCMax();
eae882b9	419	pedMeanHisto = new TH1F("pedmean_allch","Pedestal mean all channels",nx,xmin,xmax);
dbbb2c64	420	pedMeanHisto->SetDirectory(histoFile);
dbbb2c64	421
dbbb2c64	422	nx = 201;
	423	xmin = 0;
	424	xmax = 200;
eae882b9	425	pedSigmaHisto = new TH1F("pedsigma_allch","Pedestal sigma all channels",nx,xmin,xmax);
dbbb2c64	426	pedSigmaHisto->SetDirectory(histoFile);
	427
	428	tree = new TTree("t","Pedestal tree");
	429	tree->Branch("bp",&busPatchId,"bp/I");
	430	tree->Branch("manu",&manuId,",manu/I");
	431	tree->Branch("channel",&channelId,",channel/I");
	432	tree->Branch("pedMean",&pedMean,",pedMean/D");
	433	tree->Branch("pedSigma",&pedSigma,",pedSigma/D");
f9e83f1d	434	tree->Branch("nevt",&evt,",evt/D");
dbbb2c64	435
	436	// iterator over pedestal
	437	TIter next(fPedestalStore ->CreateIterator());
	438	AliMUONVCalibParam* ped;
f9e83f1d	439	AliMUONErrorCounter* manuCounter;
dbbb2c64	440
	441	while ( ( ped = dynamic_cast<AliMUONVCalibParam*>(next() ) ) )
	442	{
	443	busPatchId = ped->ID0();
	444	manuId = ped->ID1();
	445
	446	for ( channelId = 0; channelId < ped->Size(); ++channelId )
	447	{
	448	pedMean = ped->ValueAsDouble(channelId, 0);
	449	pedSigma = ped->ValueAsDouble(channelId, 1);
f9e83f1d	450	manuCounter = static_cast<AliMUONErrorCounter*>(fManuBuspatchTable->FindObject(busPatchId,manuId));
f9e83f1d	451	evt = manuCounter->Events()/64;
dbbb2c64	452
	453	pedMeanHisto->Fill(pedMean);
	454	pedSigmaHisto->Fill(pedSigma);
	455	tree->Fill();
	456	}
5253c153	457	}
dbbb2c64	458
	459	histoFile->Write();
	460	histoFile->Close();
	461
4af2c34a	462	}