[u/mrichter/AliRoot.git] / PHOS / AliPHOSRawDigiProducer.cxx

/**************************************************************************
 * Copyright(c) 2007, ALICE Experiment at CERN, All rights reserved.      *
 *                                                                        *
 * Author: The ALICE Off-line Project.                                    *
 * Contributors are mentioned in the code where appropriate.              *
 *                                                                        *
 * Permission to use, copy, modify and distribute this software and its   *
 * documentation strictly for non-commercial purposes is hereby granted   *
 * without fee, provided that the above copyright notice appears in all   *
 * copies and that both the copyright notice and this permission notice   *
 * appear in the supporting documentation. The authors make no claims     *
 * about the suitability of this software for any purpose. It is          *
 * provided "as is" without express or implied warranty.                  *
 **************************************************************************/

/* $Id$ */

//This class produces PHOS digits of one event
//using AliPHOSRawDecoder. 
//
//   For example:
//   TClonesArray *digits = new TClonesArray("AliPHOSDigit",100);
//   AliRawReader* rawReader = new AliRawReaderDate("2006run2211.raw");
//   AliPHOSRawDecoder dc(rawReader);
//   while (rawReader->NextEvent()) {
//     AliPHOSRawDigiProducer producer;
//     producer.MakeDigits(digits,&dc);
//   }

// Author: Boris Polichtchouk

// --- ROOT system ---
#include "TClonesArray.h"

// --- AliRoot header files ---
#include "AliPHOSRawDigiProducer.h"
#include "AliPHOSRawDecoder.h"
#include "AliPHOSGeometry.h"
#include "AliPHOSDigit.h"
#include "AliPHOSRecoParam.h"
#include "AliPHOSCalibData.h"
#include "AliPHOSPulseGenerator.h"
#include "AliLog.h"

ClassImp(AliPHOSRawDigiProducer)

AliPHOSCalibData * AliPHOSRawDigiProducer::fgCalibData  = 0 ; 

//--------------------------------------------------------------------------------------
AliPHOSRawDigiProducer::AliPHOSRawDigiProducer():
  TObject(),
  fEmcMinE(0.),
  fCpvMinE(0.),
  fSampleQualityCut(1.),
  fGlobalAltroOffset(0),
  fEmcCrystals(0),
  fGeom(0),
  fPulseGenerator(0)
{
  // Default constructor
}
//--------------------------------------------------------------------------------------
AliPHOSRawDigiProducer::AliPHOSRawDigiProducer(const AliPHOSRecoParam* recoParam):
  TObject(),
  fEmcMinE(0.),
  fCpvMinE(0.),
  fSampleQualityCut(1.),
  fGlobalAltroOffset(0),
  fEmcCrystals(0),
  fGeom(0),
  fPulseGenerator(0)
{
  // Constructor takes paramerters from recoParam

  if(!recoParam) AliFatal("Reconstruction parameters are not set!");

  fEmcMinE = recoParam->GetEMCRawDigitThreshold();
  fCpvMinE = recoParam->GetCPVMinE();
  fSampleQualityCut = recoParam->GetEMCSampleQualityCut() ;
  fGlobalAltroOffset = recoParam->GetGlobalAltroOffset() ;

  fGeom=AliPHOSGeometry::GetInstance() ;
  if(!fGeom) fGeom = AliPHOSGeometry::GetInstance("IHEP");

  fEmcCrystals=fGeom->GetNCristalsInModule()*fGeom->GetNModules() ;

  fPulseGenerator = new AliPHOSPulseGenerator();

  GetCalibrationParameters() ; 
}
//--------------------------------------------------------------------------------------                       
AliPHOSRawDigiProducer::AliPHOSRawDigiProducer(const AliPHOSRawDigiProducer &dp):
  TObject(),
  fEmcMinE(0.),
  fCpvMinE(0.),
  fSampleQualityCut(1.),
  fGlobalAltroOffset(0),
  fEmcCrystals(0),
  fGeom(0),
  fPulseGenerator(0)
{                                                          
  // Copy constructor

  fEmcMinE = dp.fEmcMinE ;
  fCpvMinE = dp.fCpvMinE ;
  fEmcCrystals = dp.fEmcCrystals ;
  fPulseGenerator = new AliPHOSPulseGenerator();
  fGeom = dp.fGeom ;
}
//--------------------------------------------------------------------------------------
AliPHOSRawDigiProducer& AliPHOSRawDigiProducer::operator= (const AliPHOSRawDigiProducer &dp)
{
  // Assign operator

  if(&dp == this) return *this;

  fEmcMinE = dp.fEmcMinE ;
  fCpvMinE = dp.fCpvMinE ;
  fSampleQualityCut = dp.fSampleQualityCut ;
  fGlobalAltroOffset = dp.fGlobalAltroOffset ;
  fEmcCrystals = dp.fEmcCrystals ;
  fGeom = dp.fGeom ;
  if(fPulseGenerator) delete fPulseGenerator ;
  fPulseGenerator = new AliPHOSPulseGenerator();
  return  *this;
} 
//--------------------------------------------------------------------------------------                                                   
AliPHOSRawDigiProducer::~AliPHOSRawDigiProducer()
{
  // Desctructor
  if(fPulseGenerator) delete fPulseGenerator ;
  fPulseGenerator=0 ;
}
//--------------------------------------------------------------------------------------
void AliPHOSRawDigiProducer::MakeDigits(TClonesArray *digits, AliPHOSRawDecoder* decoder) 
{
  //Makes the job.
  //TClonesArray *digits and raw data decoder should be provided by calling function.

  digits->Clear();
 
  Int_t    iDigit   = 0 ;
  Int_t relId[4], absId =0;

  const Double_t baseLine=1. ; //Minimal energy of digit in ADC ch. 
  const Double_t highLowDiff=2.; //Maximal difference between High and Low channels in LG adc channels 

  //Temporary array for LowGain digits
  TClonesArray tmpLG("AliPHOSDigit",10000) ;
  Int_t ilgDigit=0 ;


  //Read current altro offcet from RCU
  decoder->SetAmpOffset(fGlobalAltroOffset) ;

  //Let decoder subtract pedestals in case of ZS
  decoder->SetCalibData(fgCalibData) ;
  
  while (decoder->NextDigit()) {

    Double_t energy=decoder->GetEnergy() ; 
    if(energy<=baseLine) //in ADC channels
      continue ;

    //remove digits with bad shape. Decoder should calculate quality so that 
    //in default case quality [0,1], while larger values of quality mean somehow 
    //corrupted samples, 999 means obviously corrupted sample.
    //It is difficult to fit samples with overflow (even setting cut on overflow values)
    //because too few points are left to fit. So we do not evaluate samples with overflow
    if(decoder->GetSampleQuality() > fSampleQualityCut && !(decoder->IsOverflow()))
       continue ;

    Bool_t lowGainFlag = decoder->IsLowGain();

    relId[0] = decoder->GetModule();
    relId[1] = 0;
    relId[2] = decoder->GetRow();
    relId[3] = decoder->GetColumn();
    fGeom->RelToAbsNumbering(relId, absId);

    Double_t time = decoder->GetTime() ;
    time = CalibrateT(time,relId,lowGainFlag) ;

    energy = CalibrateE(energy,relId,lowGainFlag) ;

    if(energy <= 0.) 
       continue;

    if(lowGainFlag){
      new(tmpLG[ilgDigit]) AliPHOSDigit(-1,absId,(Float_t)energy,(Float_t)time);
      ilgDigit++ ; 
    }
    else{ 
      if(decoder->IsOverflow()) //Keep this digit to replace it by Low Gain later.
                                //If there is no LogGain it wil be removed by cut on Min E
        new((*digits)[iDigit]) AliPHOSDigit(-1,absId,-1.f,(Float_t)time);
      else
        new((*digits)[iDigit]) AliPHOSDigit(-1,absId,(Float_t)energy,(Float_t)time);
      iDigit++;
    }
  }

  //Now scan created LG and HG digits and keep only those which appeared in both lists 
  //replace energy of HighGain digits only if there is overflow
  //negative energy (overflow)
  digits->Sort() ;
  tmpLG.Sort() ;
  Int_t iLG = 0;
  Int_t nLG1 = tmpLG.GetEntriesFast()-1 ;

  for(Int_t iDig=0 ; iDig < digits->GetEntriesFast() ; iDig++) { 
    AliPHOSDigit * digHG = dynamic_cast<AliPHOSDigit*>(digits->At(iDig)) ;
    if (!digHG) continue;
    AliPHOSDigit * digLG = dynamic_cast<AliPHOSDigit*>(tmpLG.At(iLG)) ;
    while(digLG && iLG<nLG1 && digHG->GetId()> digLG->GetId()){
      iLG++ ;
      digLG = dynamic_cast<AliPHOSDigit*>(tmpLG.At(iLG)) ;
    }
    absId=digHG->GetId() ;                                                                                                         
    fGeom->AbsToRelNumbering(absId,relId) ;                                                                                              
 
    if(digLG && digHG->GetId() == digLG->GetId()){ //we found pair
      if(digHG->GetEnergy()<0.){ //This is overflow in HG
        digHG->SetTime(digLG->GetTime()) ;
        digHG->SetEnergy(digLG->GetEnergy()) ;
      } 
      else{ //Make approximate comparison of HG and LG energies
        Double_t de = (digHG->GetEnergy()-digLG->GetEnergy()) ; 
        if(TMath::Abs(de)>CalibrateE(double(highLowDiff),relId,1)){ //too strong difference, remove digit
          digits->RemoveAt(iDig) ;
        }
      }
    }
    else{ //no pair - remove
      // temporary fix for dead LG channels
      if(relId[2]%2==1 && relId[3]%16==4) 
        continue ;
      if(digHG->GetEnergy()>CalibrateE(double(5.),relId,1)) //One can not always find LG with Amp<5 ADC ch.
        digits->RemoveAt(iDig) ;                                                                                                            
    }
  }

  CleanDigits(digits) ;

}
//____________________________________________________________________________
Double_t AliPHOSRawDigiProducer::CalibrateE(Double_t amp, Int_t* relId, Bool_t isLowGain)
{
  // Convert EMC LG amplitude to HG (multipli by ~16)
  // Calibration parameters are taken from calibration data base 
  if(fgCalibData){ 
    Int_t   module = relId[0];  
    Int_t   column = relId[3];
    Int_t   row    = relId[2];
    if(relId[1]==0) { // this is EMC 
      if(isLowGain){
        amp*= fgCalibData->GetHighLowRatioEmc(module,column,row);
      }
      return amp ;         
    }         
  }          
  return 0;        
}
//____________________________________________________________________________
Double_t AliPHOSRawDigiProducer::CalibrateT(Double_t time, Int_t * relId, Bool_t /* isLowGain */)
{
  //Calibrate time
  time*=fPulseGenerator->GetRawFormatTimeTrigger() ;
  if(fgCalibData){
    Int_t   module = relId[0];
    Int_t   column = relId[3];
    Int_t   row    = relId[2];
    if(relId[1]==0) { // this is EMC
      time += fgCalibData->GetTimeShiftEmc(module,column,row);                   
      return time ;             
    }
  }
 
  return -999.;
}
//____________________________________________________________________________
void AliPHOSRawDigiProducer::CleanDigits(TClonesArray * digits)
{
  // remove digits with amplitudes below threshold.
  // remove digits in bad channels
  // sort digits with icreasing AbsId
  
  //remove digits in bad map and below threshold
  Bool_t isBadMap = 0 ;
  if(fgCalibData->GetNumOfEmcBadChannels()){
    isBadMap=1 ;
  }
  
  for(Int_t i=0; i<digits->GetEntriesFast(); i++){
    AliPHOSDigit * digit = static_cast<AliPHOSDigit*>(digits->At(i)) ;
    if(!digit)
      continue  ;
    if ( (IsInEMC(digit) && digit->GetEnergy() < fEmcMinE) ||
	 (IsInCPV(digit) && digit->GetEnergy() < fCpvMinE) ){
      digits->RemoveAt(i) ;
      continue ;
    }
    if(isBadMap){ //check bad map now
      Int_t relid[4] ;
      fGeom->AbsToRelNumbering(digit->GetId(), relid) ; 
      if(fgCalibData->IsBadChannelEmc(relid[0],relid[3],relid[2])){
	digits->RemoveAt(i) ;
      }
    }
  }

  //Compress, sort and set indexes
  digits->Compress() ;
//  digits->Sort(); already sorted earlier
  for (Int_t i = 0 ; i < digits->GetEntriesFast() ; i++) { 
    AliPHOSDigit *digit = static_cast<AliPHOSDigit*>( digits->At(i) ) ; 
    digit->SetIndexInList(i) ;     
  }
}
//____________________________________________________________________________
Bool_t AliPHOSRawDigiProducer::IsInEMC(AliPHOSDigit * digit) const
{
  // Tells if (true) or not (false) the digit is in a PHOS-EMC module
  return digit->GetId() <= fEmcCrystals ;

}

//____________________________________________________________________________
Bool_t AliPHOSRawDigiProducer::IsInCPV(AliPHOSDigit * digit) const
{
  // Tells if (true) or not (false) the digit is in a PHOS-CPV module
  return digit->GetId() > fEmcCrystals ;
}
//____________________________________________________________________________
void AliPHOSRawDigiProducer::GetCalibrationParameters() 
{
  // Set calibration parameters:
  // if calibration database exists, they are read from database,
  // otherwise, reconstruction stops in the constructor of AliPHOSCalibData
  //
  // It is a user responsilibity to open CDB before reconstruction, for example: 
  // AliCDBStorage* storage = AliCDBManager::Instance()->GetStorage("local://CalibDB");

  if (!fgCalibData){
    fgCalibData = new AliPHOSCalibData(-1); //use AliCDBManager's run number
  }
  if (fgCalibData->GetCalibDataEmc() == 0)
    AliFatal("Calibration parameters for PHOS EMC not found. Stop reconstruction.\n");
  if (fgCalibData->GetCalibDataCpv() == 0)
    AliFatal("Calibration parameters for PHOS CPV not found. Stop reconstruction.\n");
}
Commit	Line	Data
7bc140a5	1	/**************************************************************************
	2	* Copyright(c) 2007, ALICE Experiment at CERN, All rights reserved. *
	3	* *
	4	* Author: The ALICE Off-line Project. *
	5	* Contributors are mentioned in the code where appropriate. *
	6	* *
	7	* Permission to use, copy, modify and distribute this software and its *
	8	* documentation strictly for non-commercial purposes is hereby granted *
	9	* without fee, provided that the above copyright notice appears in all *
	10	* copies and that both the copyright notice and this permission notice *
	11	* appear in the supporting documentation. The authors make no claims *
	12	* about the suitability of this software for any purpose. It is *
	13	* provided "as is" without express or implied warranty. *
	14	**************************************************************************/
	15
	16	/* $Id$ */
	17
	18	//This class produces PHOS digits of one event
	19	//using AliPHOSRawDecoder.
	20	//
	21	// For example:
	22	// TClonesArray *digits = new TClonesArray("AliPHOSDigit",100);
	23	// AliRawReader* rawReader = new AliRawReaderDate("2006run2211.raw");
	24	// AliPHOSRawDecoder dc(rawReader);
	25	// while (rawReader->NextEvent()) {
	26	// AliPHOSRawDigiProducer producer;
	27	// producer.MakeDigits(digits,&dc);
	28	// }
	29
	30	// Author: Boris Polichtchouk
	31
	32	// --- ROOT system ---
88fb5e50	33	#include "TClonesArray.h"
88fb5e50	34
7bc140a5	35	// --- AliRoot header files ---
88fb5e50	36	#include "AliPHOSRawDigiProducer.h"
	37	#include "AliPHOSRawDecoder.h"
	38	#include "AliPHOSGeometry.h"
	39	#include "AliPHOSDigit.h"
c0394bfb	40	#include "AliPHOSRecoParam.h"
c0394bfb	41	#include "AliPHOSCalibData.h"
39569d36	42	#include "AliPHOSPulseGenerator.h"
c0394bfb	43	#include "AliLog.h"
88fb5e50	44
	45	ClassImp(AliPHOSRawDigiProducer)
	46
c0394bfb	47	AliPHOSCalibData * AliPHOSRawDigiProducer::fgCalibData = 0 ;
	48
	49	//--------------------------------------------------------------------------------------
7e88424f	50	AliPHOSRawDigiProducer::AliPHOSRawDigiProducer():
	51	TObject(),
	52	fEmcMinE(0.),
	53	fCpvMinE(0.),
	54	fSampleQualityCut(1.),
bafc1087	55	fGlobalAltroOffset(0),
7e88424f	56	fEmcCrystals(0),
	57	fGeom(0),
	58	fPulseGenerator(0)
	59	{
	60	// Default constructor
c0394bfb	61	}
c0394bfb	62	//--------------------------------------------------------------------------------------
7e88424f	63	AliPHOSRawDigiProducer::AliPHOSRawDigiProducer(const AliPHOSRecoParam* recoParam):
	64	TObject(),
	65	fEmcMinE(0.),
	66	fCpvMinE(0.),
	67	fSampleQualityCut(1.),
bafc1087	68	fGlobalAltroOffset(0),
7e88424f	69	fEmcCrystals(0),
	70	fGeom(0),
	71	fPulseGenerator(0)
	72	{
	73	// Constructor takes paramerters from recoParam
c0394bfb	74
7e88424f	75	if(!recoParam) AliFatal("Reconstruction parameters are not set!");
c0394bfb	76
12dd7f10	77	fEmcMinE = recoParam->GetEMCRawDigitThreshold();
7e88424f	78	fCpvMinE = recoParam->GetCPVMinE();
7e88424f	79	fSampleQualityCut = recoParam->GetEMCSampleQualityCut() ;
bafc1087	80	fGlobalAltroOffset = recoParam->GetGlobalAltroOffset() ;
70d93620	81
c0394bfb	82	fGeom=AliPHOSGeometry::GetInstance() ;
	83	if(!fGeom) fGeom = AliPHOSGeometry::GetInstance("IHEP");
	84
	85	fEmcCrystals=fGeom->GetNCristalsInModule()*fGeom->GetNModules() ;
	86
39569d36	87	fPulseGenerator = new AliPHOSPulseGenerator();
39569d36	88
c0394bfb	89	GetCalibrationParameters() ;
	90	}
	91	//--------------------------------------------------------------------------------------
7e88424f	92	AliPHOSRawDigiProducer::AliPHOSRawDigiProducer(const AliPHOSRawDigiProducer &dp):
	93	TObject(),
	94	fEmcMinE(0.),
	95	fCpvMinE(0.),
	96	fSampleQualityCut(1.),
bafc1087	97	fGlobalAltroOffset(0),
7e88424f	98	fEmcCrystals(0),
	99	fGeom(0),
	100	fPulseGenerator(0)
	101	{
	102	// Copy constructor
c0394bfb	103
	104	fEmcMinE = dp.fEmcMinE ;
	105	fCpvMinE = dp.fCpvMinE ;
	106	fEmcCrystals = dp.fEmcCrystals ;
39569d36	107	fPulseGenerator = new AliPHOSPulseGenerator();
c0394bfb	108	fGeom = dp.fGeom ;
	109	}
	110	//--------------------------------------------------------------------------------------
7e88424f	111	AliPHOSRawDigiProducer& AliPHOSRawDigiProducer::operator= (const AliPHOSRawDigiProducer &dp)
	112	{
	113	// Assign operator
	114
c0394bfb	115	if(&dp == this) return *this;
	116
	117	fEmcMinE = dp.fEmcMinE ;
	118	fCpvMinE = dp.fCpvMinE ;
70d93620	119	fSampleQualityCut = dp.fSampleQualityCut ;
bafc1087	120	fGlobalAltroOffset = dp.fGlobalAltroOffset ;
c0394bfb	121	fEmcCrystals = dp.fEmcCrystals ;
c0394bfb	122	fGeom = dp.fGeom ;
39569d36	123	if(fPulseGenerator) delete fPulseGenerator ;
39569d36	124	fPulseGenerator = new AliPHOSPulseGenerator();
c0394bfb	125	return *this;
c0394bfb	126	}
39569d36	127	//--------------------------------------------------------------------------------------
7e88424f	128	AliPHOSRawDigiProducer::~AliPHOSRawDigiProducer()
	129	{
	130	// Desctructor
	131	if(fPulseGenerator) delete fPulseGenerator ;
	132	fPulseGenerator=0 ;
39569d36	133	}
7bc140a5	134	//--------------------------------------------------------------------------------------
88fb5e50	135	void AliPHOSRawDigiProducer::MakeDigits(TClonesArray digits, AliPHOSRawDecoder decoder)
88fb5e50	136	{
7bc140a5	137	//Makes the job.
	138	//TClonesArray *digits and raw data decoder should be provided by calling function.
	139
88fb5e50	140	digits->Clear();
88fb5e50	141
88fb5e50	142	Int_t iDigit = 0 ;
88fb5e50	143	Int_t relId[4], absId =0;
88fb5e50	144
c0394bfb	145	const Double_t baseLine=1. ; //Minimal energy of digit in ADC ch.
a7c985dc	146	const Double_t highLowDiff=2.; //Maximal difference between High and Low channels in LG adc channels
88fb5e50	147
c0394bfb	148	//Temporary array for LowGain digits
	149	TClonesArray tmpLG("AliPHOSDigit",10000) ;
	150	Int_t ilgDigit=0 ;
bafc1087	151
	152
	153	//Read current altro offcet from RCU
	154	decoder->SetAmpOffset(fGlobalAltroOffset) ;
	155
	156	//Let decoder subtract pedestals in case of ZS
	157	decoder->SetCalibData(fgCalibData) ;
c0394bfb	158
c0394bfb	159	while (decoder->NextDigit()) {
34827459	160
c0394bfb	161	Double_t energy=decoder->GetEnergy() ;
	162	if(energy<=baseLine) //in ADC channels
	163	continue ;
1267d56d	164
7e88424f	165	//remove digits with bad shape. Decoder should calculate quality so that
70d93620	166	//in default case quality [0,1], while larger values of quality mean somehow
70d93620	167	//corrupted samples, 999 means obviously corrupted sample.
a7c985dc	168	//It is difficult to fit samples with overflow (even setting cut on overflow values)
	169	//because too few points are left to fit. So we do not evaluate samples with overflow
	170	if(decoder->GetSampleQuality() > fSampleQualityCut && !(decoder->IsOverflow()))
70d93620	171	continue ;
70d93620	172
c0394bfb	173	Bool_t lowGainFlag = decoder->IsLowGain();
88fb5e50	174
	175	relId[0] = decoder->GetModule();
	176	relId[1] = 0;
	177	relId[2] = decoder->GetRow();
	178	relId[3] = decoder->GetColumn();
c0394bfb	179	fGeom->RelToAbsNumbering(relId, absId);
	180
	181	Double_t time = decoder->GetTime() ;
	182	time = CalibrateT(time,relId,lowGainFlag) ;
	183
	184	energy = CalibrateE(energy,relId,lowGainFlag) ;
	185
	186	if(energy <= 0.)
	187	continue;
	188
	189	if(lowGainFlag){
7899109f	190	new(tmpLG[ilgDigit]) AliPHOSDigit(-1,absId,(Float_t)energy,(Float_t)time);
c0394bfb	191	ilgDigit++ ;
	192	}
	193	else{
	194	if(decoder->IsOverflow()) //Keep this digit to replace it by Low Gain later.
	195	//If there is no LogGain it wil be removed by cut on Min E
7899109f	196	new((*digits)[iDigit]) AliPHOSDigit(-1,absId,-1.f,(Float_t)time);
c0394bfb	197	else
7899109f	198	new((*digits)[iDigit]) AliPHOSDigit(-1,absId,(Float_t)energy,(Float_t)time);
7899109f	199	iDigit++;
c0394bfb	200	}
	201	}
	202
	203	//Now scan created LG and HG digits and keep only those which appeared in both lists
	204	//replace energy of HighGain digits only if there is overflow
	205	//negative energy (overflow)
	206	digits->Sort() ;
	207	tmpLG.Sort() ;
	208	Int_t iLG = 0;
	209	Int_t nLG1 = tmpLG.GetEntriesFast()-1 ;
39569d36	210
c0394bfb	211	for(Int_t iDig=0 ; iDig < digits->GetEntriesFast() ; iDig++) {
c0394bfb	212	AliPHOSDigit * digHG = dynamic_cast<AliPHOSDigit*>(digits->At(iDig)) ;
7899109f	213	if (!digHG) continue;
c0394bfb	214	AliPHOSDigit * digLG = dynamic_cast<AliPHOSDigit*>(tmpLG.At(iLG)) ;
a7c985dc	215	while(digLG && iLG<nLG1 && digHG->GetId()> digLG->GetId()){
c0394bfb	216	iLG++ ;
	217	digLG = dynamic_cast<AliPHOSDigit*>(tmpLG.At(iLG)) ;
	218	}
605cb8bb	219	absId=digHG->GetId() ;
a7c985dc	220	fGeom->AbsToRelNumbering(absId,relId) ;
a7c985dc	221
7899109f	222	if(digLG && digHG->GetId() == digLG->GetId()){ //we found pair
c0394bfb	223	if(digHG->GetEnergy()<0.){ //This is overflow in HG
7899109f	224	digHG->SetTime(digLG->GetTime()) ;
7899109f	225	digHG->SetEnergy(digLG->GetEnergy()) ;
c0394bfb	226	}
c0394bfb	227	else{ //Make approximate comparison of HG and LG energies
a7c985dc	228	Double_t de = (digHG->GetEnergy()-digLG->GetEnergy()) ;
a7c985dc	229	if(TMath::Abs(de)>CalibrateE(double(highLowDiff),relId,1)){ //too strong difference, remove digit
c0394bfb	230	digits->RemoveAt(iDig) ;
88fb5e50	231	}
88fb5e50	232	}
88fb5e50	233	}
c0394bfb	234	else{ //no pair - remove
c0394bfb	235	// temporary fix for dead LG channels
c0394bfb	236	if(relId[2]%2==1 && relId[3]%16==4)
c0394bfb	237	continue ;
a7c985dc	238	if(digHG->GetEnergy()>CalibrateE(double(5.),relId,1)) //One can not always find LG with Amp<5 ADC ch.
39569d36	239	digits->RemoveAt(iDig) ;
c0394bfb	240	}
	241	}
	242
	243	CleanDigits(digits) ;
	244
	245	}
	246	//____________________________________________________________________________
	247	Double_t AliPHOSRawDigiProducer::CalibrateE(Double_t amp, Int_t* relId, Bool_t isLowGain)
	248	{
634d2178	249	// Convert EMC LG amplitude to HG (multipli by ~16)
634d2178	250	// Calibration parameters are taken from calibration data base
c0394bfb	251	if(fgCalibData){
	252	Int_t module = relId[0];
	253	Int_t column = relId[3];
	254	Int_t row = relId[2];
	255	if(relId[1]==0) { // this is EMC
	256	if(isLowGain){
	257	amp*= fgCalibData->GetHighLowRatioEmc(module,column,row);
88fb5e50	258	}
c0394bfb	259	return amp ;
	260	}
	261	}
	262	return 0;
	263	}
	264	//____________________________________________________________________________
	265	Double_t AliPHOSRawDigiProducer::CalibrateT(Double_t time, Int_t * relId, Bool_t /* isLowGain */)
	266	{
	267	//Calibrate time
39569d36	268	time*=fPulseGenerator->GetRawFormatTimeTrigger() ;
c0394bfb	269	if(fgCalibData){
	270	Int_t module = relId[0];
	271	Int_t column = relId[3];
	272	Int_t row = relId[2];
	273	if(relId[1]==0) { // this is EMC
	274	time += fgCalibData->GetTimeShiftEmc(module,column,row);
	275	return time ;
	276	}
	277	}
	278
	279	return -999.;
	280	}
	281	//____________________________________________________________________________
	282	void AliPHOSRawDigiProducer::CleanDigits(TClonesArray * digits)
	283	{
	284	// remove digits with amplitudes below threshold.
	285	// remove digits in bad channels
	286	// sort digits with icreasing AbsId
	287
	288	//remove digits in bad map and below threshold
	289	Bool_t isBadMap = 0 ;
	290	if(fgCalibData->GetNumOfEmcBadChannels()){
	291	isBadMap=1 ;
	292	}
	293
	294	for(Int_t i=0; i<digits->GetEntriesFast(); i++){
	295	AliPHOSDigit * digit = static_cast<AliPHOSDigit*>(digits->At(i)) ;
	296	if(!digit)
	297	continue ;
	298	if ( (IsInEMC(digit) && digit->GetEnergy() < fEmcMinE) \|\|
	299	(IsInCPV(digit) && digit->GetEnergy() < fCpvMinE) ){
	300	digits->RemoveAt(i) ;
	301	continue ;
	302	}
	303	if(isBadMap){ //check bad map now
	304	Int_t relid[4] ;
	305	fGeom->AbsToRelNumbering(digit->GetId(), relid) ;
a65517aa	306	if(fgCalibData->IsBadChannelEmc(relid[0],relid[3],relid[2])){
c0394bfb	307	digits->RemoveAt(i) ;
88fb5e50	308	}
88fb5e50	309	}
88fb5e50	310	}
88fb5e50	311
c0394bfb	312	//Compress, sort and set indexes
	313	digits->Compress() ;
	314	// digits->Sort(); already sorted earlier
	315	for (Int_t i = 0 ; i < digits->GetEntriesFast() ; i++) {
	316	AliPHOSDigit digit = static_cast<AliPHOSDigit>( digits->At(i) ) ;
	317	digit->SetIndexInList(i) ;
	318	}
	319	}
	320	//____________________________________________________________________________
	321	Bool_t AliPHOSRawDigiProducer::IsInEMC(AliPHOSDigit * digit) const
	322	{
	323	// Tells if (true) or not (false) the digit is in a PHOS-EMC module
	324	return digit->GetId() <= fEmcCrystals ;
	325
	326	}
	327
	328	//____________________________________________________________________________
	329	Bool_t AliPHOSRawDigiProducer::IsInCPV(AliPHOSDigit * digit) const
	330	{
	331	// Tells if (true) or not (false) the digit is in a PHOS-CPV module
	332	return digit->GetId() > fEmcCrystals ;
	333	}
	334	//____________________________________________________________________________
	335	void AliPHOSRawDigiProducer::GetCalibrationParameters()
	336	{
	337	// Set calibration parameters:
	338	// if calibration database exists, they are read from database,
	339	// otherwise, reconstruction stops in the constructor of AliPHOSCalibData
	340	//
	341	// It is a user responsilibity to open CDB before reconstruction, for example:
	342	// AliCDBStorage* storage = AliCDBManager::Instance()->GetStorage("local://CalibDB");
	343
	344	if (!fgCalibData){
	345	fgCalibData = new AliPHOSCalibData(-1); //use AliCDBManager's run number
	346	}
	347	if (fgCalibData->GetCalibDataEmc() == 0)
	348	AliFatal("Calibration parameters for PHOS EMC not found. Stop reconstruction.\n");
	349	if (fgCalibData->GetCalibDataCpv() == 0)
	350	AliFatal("Calibration parameters for PHOS CPV not found. Stop reconstruction.\n");
88fb5e50	351	}