Bug fix

[u/mrichter/AliRoot.git] / PWG3 / vertexingHF / RunAnalysisAODVertexingHF.C

class AliAnalysisGrid;\r
\r
void RunAnalysisAODVertexingHF()\r
{\r
  //\r
  // Test macro for AliAnalysisTaskSE's for heavy-flavour candidates\r
  // It has the structure of a Analysis Train:\r
  // - in this macro, change things related to running mode\r
  //   and input preparation \r
  // - add your task using a AddTaskXXX macro \r
  //\r
  // A.Dainese, andrea.dainese@lnl.infn.it\r
  // "grid" mode added by R.Bala, bala@to.infn.it\r
  //\r
\r
  //\r
  TString analysisMode = "grid"; // "local", "grid", or "proof" (not yet)\r
  TString inputMode    = "list"; // "list", "xml", or "dataset" (not yet)\r
  Long64_t nentries=1234567890,firstentry=0;\r
  Bool_t useParFiles=kFALSE;\r
  Bool_t useAlienPlugin=kTRUE;\r
  TString pluginmode="test";\r
  TString loadMacroPath="$ALICE_ROOT/PWG3/vertexingHF/";\r
  //\r
\r
  if(analysisMode=="grid") {\r
    // Connect to AliEn\r
    TGrid::Connect("alien://");\r
  } else if(analysisMode=="proof") {\r
    // Connect to the PROOF cluster\r
    printf("PROOF mode not yet functional..\n");\r
    return;\r
    TProof::Open("alicecaf");\r
    //TProof::Reset("alicecaf");\r
  }\r
\r
\r
  // AliRoot libraries\r
  if(analysisMode=="local" || analysisMode=="grid") {\r
    TString loadLibraries="LoadLibraries.C"; loadLibraries.Prepend(loadMacroPath.Data());\r
    gROOT->LoadMacro(loadLibraries.Data());\r
    LoadLibraries(useParFiles);\r
  } else if (analysisMode=="proof") {\r
    gSystem->Load("libTree.so");\r
    gSystem->Load("libGeom.so");\r
    gSystem->Load("libPhysics.so");\r
    gSystem->Load("libVMC.so");    \r
    // Enable the needed packages\r
    //gProof->ClearPackages();\r
    if(!useParFiles) {\r
      gProof->UploadPackage("AF-v4-16");\r
      gProof->EnablePackage("AF-v4-16");\r
    } else {\r
      TString parDir="/afs/cern.ch/user/d/dainesea/code/";\r
      TString parFile;\r
      // --- Enable the STEERBase Package\r
      parFile="STEERBase.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("STEERBase");\r
      // --- Enable the ESD Package\r
      parFile="ESD.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("ESD");\r
      // --- Enable the AOD Package\r
      parFile="AOD.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("AOD");\r
      // --- Enable the ANALYSIS Package\r
      parFile="ANALYSIS.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("ANALYSIS");\r
      // --- Enable the ANALYSISalice Package\r
      parFile="ANALYSISalice.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("ANALYSISalice");\r
      // --- Enable the CORRFW Package\r
      parFile="CORRFW.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("CORRFW");\r
      // --- Enable the PWG3base Package\r
      parFile="PWG3base.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("PWG3base");\r
      // --- Enable the PWG3vertexingHF Package\r
      parFile="PWG3vertexingHF.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("PWG3vertexingHF");\r
      // --- Enable the JETAN Package\r
      parFile="JETAN.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("JETAN");\r
      // --- Enable the PWG3muon Package\r
      parFile="PWG3muon.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("PWG3muon");\r
      // --- Enable the PWG4PartCorrBase Package\r
      parFile="PWG4PartCorrBase.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("PWG4PartCorrBase");\r
      // --- Enable the PWG4PartCorrDep Package\r
      parFile="PWG4PartCorrDep.par"; parFile.Prepend(parDir.Data());\r
      gProof->UploadPackage(parFile.Data());\r
      gProof->EnablePackage("PWG4PartCorrDep");\r
    }\r
    gProof->ShowEnabledPackages(); // show a list of enabled packages\r
  }\r
\r
\r
  // Create Alien plugin, if requested\r
  if(useAlienPlugin) {  \r
    AliAnalysisGrid *alienHandler = CreateAlienHandler(pluginmode,useParFiles);  \r
    if(!alienHandler) return;\r
  }\r
\r
\r
  //-------------------------------------------------------------------\r
  // Prepare input chain\r
  TChain *chainAOD = 0;\r
  TString dataset; // for proof\r
\r
  if(!useAlienPlugin) {\r
    TString makeAODInputChain="MakeAODInputChain.C"; makeAODInputChain.Prepend(loadMacroPath.Data());\r
    gROOT->LoadMacro(makeAODInputChain.Data());\r
    if(inputMode=="list") {\r
      // Local files\r
      chainAOD = MakeAODInputChain();// with this it reads ./AliAOD.root and ./AliAOD.VertexingHF.root\r
      //chainAOD = MakeAODInputChain("alien:///alice/cern.ch/user/r/rbala/newtrain/out_lhc08x/180100/",1,1);\r
    } else if(inputMode=="xml") {\r
      // xml\r
      chainAOD = MakeAODInputChain("collection_aod.xml","collection_aodHF.xml");\r
    } else if(inputMode=="dataset") {\r
      // CAF dataset\r
      //gProof->ShowDataSet();\r
      dataset="/ITS/dainesea/AODVertexingHF_LHC08x_180100_small";\r
      chainAOD = MakeAODInputChainCAF(dataset.Data());\r
    }\r
  }\r
\r
  // Create the analysis manager\r
  AliAnalysisManager *mgr  = new AliAnalysisManager("My Manager","My Manager");\r
  mgr->SetDebugLevel(10);\r
  // Connect plug-in to the analysis manager\r
  if(useAlienPlugin) mgr->SetGridHandler(alienHandler);\r
\r
\r
  // Input\r
  AliAODInputHandler *inputHandler = new AliAODInputHandler();\r
  mgr->SetInputEventHandler(inputHandler);\r
  //-------------------------------------------------------------------\r
\r
  \r
  //-------------------------------------------------------------------\r
  // Analysis tasks (wagons of the train)   \r
  //\r
  TString taskName;\r
\r
  taskName="AddTaskCompareHF.C"; taskName.Prepend(loadMacroPath.Data());\r
  gROOT->LoadMacro(taskName.Data());\r
  AliAnalysisTaskSECompareHF *cmpTask = AddTaskCompareHF();\r
\r
  taskName="AddTaskDplus.C"; taskName.Prepend(loadMacroPath.Data());\r
  gROOT->LoadMacro(taskName.Data());\r
  AliAnalysisTaskSEDplus *dplusTask = AddTaskDplus();\r
\r
  //taskName="AddTaskSelectHF.C"; taskName.Prepend(loadMacroPath.Data());\r
  //gROOT->LoadMacro(taskName.Data());\r
  //AliAnalysisTaskSESelectHF *seleTask = AddTaskSelectHF();\r
\r
  taskName="AddTaskBkgLikeSign.C"; taskName.Prepend(loadMacroPath.Data());\r
  gROOT->LoadMacro(taskName.Data());\r
  //AliAnalysisTaskSEBkgLikeSignJPSI *lsTask = AddTaskBkgLikeSign();\r
\r
  //taskName="AddTaskBtoJPSItoEle.C"; taskName.Prepend(loadMacroPath.Data());\r
  //gROOT->LoadMacro(taskName.Data());\r
  //AliAnalysisTaskSEBtoJPSItoEle *jpsiTask = AddTaskBtoJPSItoEle();\r
\r
  //taskName="AddTaskCF.C"; taskName.Prepend(loadMacroPath.Data());\r
  //gROOT->LoadMacro(taskName.Data());\r
  //AliCFHeavyFlavourTask *cfTask = AddTaskCF();\r
\r
  //taskName="AddTaskCFMultiVar.C"; taskName.Prepend(loadMacroPath.Data());\r
  //gROOT->LoadMacro(taskName.Data());\r
  //AliCFHeavyFlavourTaskMultiVar *cfmvTask = AddTaskCFMultiVar();\r
\r
  taskName="AddTaskCFMultiVarMultiStep.C"; taskName.Prepend(loadMacroPath.Data());\r
  gROOT->LoadMacro(taskName.Data());\r
  AliCFHeavyFlavourTaskMultiVarMultiStep *cfmvmsTask = AddTaskCFMultiVarMultiStep();\r
\r
\r
  //-------------------------------------------------------------------\r
\r
  //\r
  // Run the analysis\r
  //    \r
  if(chainAOD) printf("CHAIN HAS %d ENTRIES\n",(Int_t)chainAOD->GetEntries());\r
\r
  if(!mgr->InitAnalysis()) return;\r
  mgr->PrintStatus();\r
  if(analysisMode=="grid" && !useAlienPlugin) analysisMode="local";\r
  mgr->StartAnalysis(analysisMode.Data(),chainAOD,nentries,firstentry);\r
\r
  return;\r
}\r
//_____________________________________________________________________________\r
//\r
AliAnalysisGrid* CreateAlienHandler(TString pluginmode="test",Bool_t useParFiles=kFALSE)\r
{\r
  // Check if user has a valid token, otherwise make one. This has limitations.\r
  // One can always follow the standard procedure of calling alien-token-init then\r
  //   source /tmp/gclient_env_$UID in the current shell.\r
   if (!AliAnalysisGrid::CreateToken()) return NULL;\r
   AliAnalysisAlien *plugin = new AliAnalysisAlien();\r
   // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")\r
   plugin->SetRunMode(pluginmode.Data());\r
   plugin->SetUser("dainesea");\r
   plugin->SetNtestFiles(1);\r
   // Set versions of used packages\r
   plugin->SetAPIVersion("V2.4");\r
   plugin->SetROOTVersion("v5-23-02");\r
   plugin->SetAliROOTVersion("v4-17-00");\r
   // Declare input data to be processed.\r
   // Method 1: Create automatically XML collections using alien 'find' command.\r
   // Define production directory LFN\r
   //plugin->SetGridDataDir("/alice/cern.ch/user/r/rbala/newtrain/out_lhc08x/");\r
   plugin->SetGridDataDir("/alice/cern.ch/user/m/mgheata/analysisESD/output_train_default_28May2009_09h33/");\r
   // Set data search pattern\r
   plugin->SetDataPattern("AliAOD.root");\r
   plugin->SetFriendChainName("AliAOD.VertexingHF.root");\r
   // ...then add run numbers to be considered\r
  plugin->AddRunNumber(529007);\r
   // Method 2: Declare existing data files (raw collections, xml collections, root file)\r
   // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())\r
   // XML collections added via this method can be combined with the first method if\r
   // the content is compatible (using or not tags)\r
   //plugin->AddDataFile("/alice/cern.ch/user/r/rbala/newtrain/collection/collection_aod_lhc08w.xml");\r
   //   plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");\r
   // Define alien work directory where all files will be copied. Relative to alien $HOME.\r
   plugin->SetGridWorkingDir("work");\r
   // Declare alien output directory. Relative to working directory.\r
   plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output\r
   // Declare the analysis source files names separated by blancs. To be compiled runtime\r
   // using ACLiC on the worker nodes.\r
   //plugin->SetAnalysisSource("$ALICE_ROOT/PWG3/vertexingHF/AliAnalysisTaskSECompareHF.cxx");\r
   // Declare all libraries (other than the default ones for the framework. These will be\r
   // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.\r
   plugin->SetAdditionalLibs("libPWG3vertexingHF.so libPWG3base.so libPWG3muon.so libPWG4PartCorrBase.so libPWG4PartCorrDep.so");\r
   // use par files\r
   if(useParFiles) {\r
     plugin->EnablePackage("STEERBase.par");\r
     plugin->EnablePackage("ESD.par");\r
     plugin->EnablePackage("AOD.par");\r
     plugin->EnablePackage("ANALYSIS.par");\r
     plugin->EnablePackage("ANALYSISalice.par");\r
     plugin->EnablePackage("CORRFW.par");\r
     plugin->EnablePackage("PWG3base.par");\r
     plugin->EnablePackage("PWG3vertexingHF.par");\r
     plugin->EnablePackage("PWG3muon.par");\r
     plugin->EnablePackage("PWG4PartCorrBase.par");\r
     plugin->EnablePackage("PWG4PartCorrDep.par");\r
   }\r
   // Declare the output file names separated by blancs.\r
   // (can be like: file.root or file.root@ALICE::Niham::File)\r
   plugin->SetOutputFiles("CmpHF.root");\r
   // Optionally define the files to be archived.\r
   //   plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:*.root@ALICE::NIHAM::File");\r
   plugin->SetOutputArchive("log_archive.zip:stdout,stderr");\r
   // Optionally set a name for the generated analysis macro (default MyAnalysis.C)\r
   plugin->SetAnalysisMacro("AnalysisHF.C");\r
   // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)\r
   plugin->SetSplitMaxInputFileNumber(5);\r
   // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.\r
   //plugin->SetMaxInitFailed(5);\r
   // Optionally resubmit threshold.\r
   //plugin->SetMasterResubmitThreshold(90);\r
   // Optionally set time to live (default 30000 sec)\r
   //plugin->SetTTL(20000);\r
   // Optionally set input format (default xml-single)\r
   plugin->SetInputFormat("xml-single");\r
   // Optionally modify the name of the generated JDL (default analysis.jdl)\r
   plugin->SetJDLName("TaskHF.jdl");\r
   // Optionally modify job price (default 1)\r
   //plugin->SetPrice(1);      \r
   // Optionally modify split mode (default 'se')    \r
   plugin->SetSplitMode("se");\r
   // Optionally set the preferred SE    \r
   plugin->SetPreferedSE("ALICE::Legnaro::SE");\r
   \r
   return plugin;\r
}\r