Update good runs lists, added LHC10d
[u/mrichter/AliRoot.git] / PWG3 / vertexingHF / RunAnalysisAODVertexingHF.C
CommitLineData
8931206f 1class AliAnalysisGrid;
54d54d1a 2class AliAnalysisAlien;
8931206f 3
4void RunAnalysisAODVertexingHF()
5{
6 //
7 // Test macro for AliAnalysisTaskSE's for heavy-flavour candidates
8 // It has the structure of a Analysis Train:
9 // - in this macro, change things related to running mode
10 // and input preparation
11 // - add your task using a AddTaskXXX macro
12 //
13 // A.Dainese, andrea.dainese@lnl.infn.it
14 // "grid" mode added by R.Bala, bala@to.infn.it
15 //
16
17
18 gSystem->SetIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/PWG3 -I$ALICE_ROOT/PWG3/vertexingHF -g");
19 //
20 TString trainName = "D2H";
21 TString analysisMode = "grid"; // "local", "grid", or "proof"
22 TString inputMode = "list"; // "list", "xml", or "dataset"
23 Long64_t nentries=123567890,firstentry=0;
24 Bool_t useParFiles=kFALSE;
25 Bool_t useAlienPlugin=kTRUE;
efb0a9e5 26 TString pluginmode="test";
8931206f 27 Bool_t saveProofToAlien=kFALSE;
28 TString proofOutdir = "";
29 TString loadMacroPath="$ALICE_ROOT/PWG3/vertexingHF/macros/";
30 //TString loadMacroPath="./"; // this is normally needed for CAF
31 //
32
33 if(analysisMode=="grid") {
34 // Connect to AliEn
35 TGrid::Connect("alien://");
36 } else if(analysisMode=="proof") {
37 // Connect to the PROOF cluster
38 if(inputMode!="dataset") {printf("Input mode must be dataset, for proof analysis\n"); return;}
39 gEnv->SetValue("XSec.GSI.DelegProxy","2");
40 TProof::Open("alicecaf");
41 //TProof::Reset("alicecaf");
42 if(saveProofToAlien) {
43 TGrid::Connect("alien://");
44 if(gGrid) {
45 TString homedir = gGrid->GetHomeDirectory();
46 TString workdir = homedir + trainName;
47 if(!gGrid->Cd(workdir)) {
48 gGrid->Cd(homedir);
49 if(gGrid->Mkdir(workdir)) {
50 gGrid->Cd(trainName);
51 ::Info("VertexingTrain::Connect()", "Directory %s created", gGrid->Pwd());
52 }
53 }
54 gGrid->Mkdir("proof_output");
55 gGrid->Cd("proof_output");
56 proofOutdir = Form("alien://%s", gGrid->Pwd());
57 }
58 }
59 }
60
61
62 // AliRoot libraries
63 if(analysisMode=="local" || analysisMode=="grid") {
64 TString loadLibraries="LoadLibraries.C"; loadLibraries.Prepend(loadMacroPath.Data());
65 gROOT->LoadMacro(loadLibraries.Data());
66 LoadLibraries(useParFiles);
67 } else if (analysisMode=="proof") {
68 gSystem->Load("libTree.so");
69 gSystem->Load("libGeom.so");
70 gSystem->Load("libPhysics.so");
71 gSystem->Load("libVMC.so");
72 gSystem->Load("libMinuit.so");
73 // Enable the needed packages
74 //gProof->ClearPackages();
75 TString parDir="/afs/cern.ch/user/d/dainesea/code/";
76 TString parFile;
77 if(!useParFiles) {
78 gProof->UploadPackage("AF-v4-17");
79 gProof->EnablePackage("AF-v4-17");
80 // --- Enable the PWG3vertexingHF Package
81 parFile="PWG3vertexingHF.par"; parFile.Prepend(parDir.Data());
82 gProof->UploadPackage(parFile.Data());
83 gProof->EnablePackage("PWG3vertexingHF");
84 } else {
85 // --- Enable the STEERBase Package
86 parFile="STEERBase.par"; parFile.Prepend(parDir.Data());
87 gProof->UploadPackage(parFile.Data());
88 gProof->EnablePackage("STEERBase");
89 // --- Enable the ESD Package
90 parFile="ESD.par"; parFile.Prepend(parDir.Data());
91 gProof->UploadPackage(parFile.Data());
92 gProof->EnablePackage("ESD");
93 // --- Enable the AOD Package
94 parFile="AOD.par"; parFile.Prepend(parDir.Data());
95 gProof->UploadPackage(parFile.Data());
96 gProof->EnablePackage("AOD");
97 // --- Enable the ANALYSIS Package
98 parFile="ANALYSIS.par"; parFile.Prepend(parDir.Data());
99 gProof->UploadPackage(parFile.Data());
100 gProof->EnablePackage("ANALYSIS");
101 // --- Enable the ANALYSISalice Package
102 parFile="ANALYSISalice.par"; parFile.Prepend(parDir.Data());
103 gProof->UploadPackage(parFile.Data());
104 gProof->EnablePackage("ANALYSISalice");
105 // --- Enable the CORRFW Package
106 parFile="CORRFW.par"; parFile.Prepend(parDir.Data());
107 gProof->UploadPackage(parFile.Data());
108 gProof->EnablePackage("CORRFW");
109 // --- Enable the PWG3base Package
110 parFile="PWG3base.par"; parFile.Prepend(parDir.Data());
111 gProof->UploadPackage(parFile.Data());
112 gProof->EnablePackage("PWG3base");
113 // --- Enable the PWG3vertexingHF Package
114 parFile="PWG3vertexingHF.par"; parFile.Prepend(parDir.Data());
115 gProof->UploadPackage(parFile.Data());
116 gProof->EnablePackage("PWG3vertexingHF");
117 // --- Enable the PWG3muon Package
118 parFile="PWG3muon.par"; parFile.Prepend(parDir.Data());
119 gProof->UploadPackage(parFile.Data());
120 gProof->EnablePackage("PWG3muon");
121 }
122 gProof->ShowEnabledPackages(); // show a list of enabled packages
123 }
124
125
126 // Create Alien plugin, if requested
127 if(useAlienPlugin) {
128 if(analysisMode!="grid") {printf("Analysis mode must be grid, to use alien plugin\n"); return;}
129 AliAnalysisGrid *alienHandler = CreateAlienHandler(pluginmode,useParFiles);
130 if(!alienHandler) return;
131 }
132
133
134 //-------------------------------------------------------------------
135 // Prepare input
136 TChain *chainAOD = 0;
137 TString dataset; // for proof
138
139 if(!useAlienPlugin) {
140 TString makeAODInputChain="MakeAODInputChain.C"; makeAODInputChain.Prepend(loadMacroPath.Data());
141 if(inputMode=="list") {
142 // Local files
143 gROOT->LoadMacro(makeAODInputChain.Data());
144 chainAOD = MakeAODInputChain();// with this it reads ./AliAOD.root and ./AliAOD.VertexingHF.root
145 //chainAOD = MakeAODInputChain("alien:///alice/cern.ch/user/r/rbala/newtrain/out_lhc08x/180100/",1,1);
146 printf("ENTRIES %d\n",chainAOD->GetEntries());
147 } else if(inputMode=="xml") {
148 // xml
149 gROOT->LoadMacro(makeAODInputChain.Data());
150 chainAOD = MakeAODInputChain("collection_aod.xml","collection_aodHF.xml");
151 } else if(inputMode=="dataset") {
152 // CAF dataset
153 //gProof->ShowDataSets();
154 dataset="/ITS/dainesea/AODVertexingHF_LHC08x_180100";
155 }
156 }
157
158 // Create the analysis manager
159 AliAnalysisManager *mgr = new AliAnalysisManager("My Manager","My Manager");
160 mgr->SetDebugLevel(10);
161 // Connect plug-in to the analysis manager
162 if(useAlienPlugin) mgr->SetGridHandler(alienHandler);
163
164 // Input
165 AliAODInputHandler *inputHandler = new AliAODInputHandler();
8931206f 166 if(analysisMode=="proof" ) {
efb0a9e5 167 inputHandler->AddFriend("./AliAOD.VertexingHF.root");
168 //inputHandler->AddFriend("deltas/AliAOD.VertexingHF.root");
8931206f 169 if(saveProofToAlien) mgr->SetSpecialOutputLocation(proofOutdir);
170 }
171 mgr->SetInputEventHandler(inputHandler);
172 //-------------------------------------------------------------------
173
174
175 //-------------------------------------------------------------------
176 // Analysis tasks (wagons of the train)
177 //
178 TString taskName;
179
180 ////// ADD THE FULL D2H TRAIN
efb0a9e5 181 /*taskName="AddD2HTrain.C"; taskName.Prepend(loadMacroPath.Data());
8931206f 182 gROOT->LoadMacro(taskName.Data());
183 Bool_t readMC=kFALSE;
efb0a9e5 184 AddD2HTrain(readMC);//,1,0,0,0,0,0,0,0,0,0,0);*/
8931206f 185
186 ////// OR ADD INDIVIDUAL TASKS
187
efb0a9e5 188
189 /* taskName="AddTaskCompareHF.C"; taskName.Prepend(loadMacroPath.Data());
8931206f 190 gROOT->LoadMacro(taskName.Data());
191 AliAnalysisTaskSECompareHF *cmpTask = AddTaskCompareHF();
efb0a9e5 192 */
8931206f 193 taskName="AddTaskD0Mass.C"; taskName.Prepend(loadMacroPath.Data());
194 gROOT->LoadMacro(taskName.Data());
195 AliAnalysisTaskSED0Mass *d0massTask = AddTaskD0Mass();
196 AliAnalysisTaskSED0Mass *d0massLikeSignTask = AddTaskD0Mass(1);
efb0a9e5 197 /*
8931206f 198 taskName="AddTaskDplus.C"; taskName.Prepend(loadMacroPath.Data());
199 gROOT->LoadMacro(taskName.Data());
200 AliAnalysisTaskSEDplus *dplusTask = AddTaskDplus();
201
202 taskName="AddTaskDs.C"; taskName.Prepend(loadMacroPath.Data());
203 gROOT->LoadMacro(taskName.Data());
204 AliAnalysisTaskSEDs *dsTask = AddTaskDs();
205
206 //taskName="AddTaskSelectHF.C"; taskName.Prepend(loadMacroPath.Data());
207 //gROOT->LoadMacro(taskName.Data());
208 //AliAnalysisTaskSESelectHF *seleTask = AddTaskSelectHF();
209
210 taskName="AddTaskBkgLikeSignD0.C"; taskName.Prepend(loadMacroPath.Data());
211 gROOT->LoadMacro(taskName.Data());
212 AliAnalysisTaskSEBkgLikeSignD0 *lsD0Task = AddTaskBkgLikeSignD0();
213
214 taskName="AddTaskBkgLikeSignJPSI.C"; taskName.Prepend(loadMacroPath.Data());
215 gROOT->LoadMacro(taskName.Data());
216 AliAnalysisTaskSEBkgLikeSignJPSI *lsJPSITask = AddTaskBkgLikeSignJPSI();
217
218 //taskName="AddTaskBtoJPSItoEle.C"; taskName.Prepend(loadMacroPath.Data());
219 //gROOT->LoadMacro(taskName.Data());
220 //AliAnalysisTaskSEBtoJPSItoEle *jpsiTask = AddTaskBtoJPSItoEle();
221
222 taskName="AddTaskCFMultiVarMultiStep.C"; taskName.Prepend(loadMacroPath.Data());
223 gROOT->LoadMacro(taskName.Data());
224 AliCFHeavyFlavourTaskMultiVarMultiStep *cfmvmsTask = AddTaskCFMultiVarMultiStep();
225
226 taskName="AddTaskCharmFraction.C"; taskName.Prepend(loadMacroPath.Data());
227 gROOT->LoadMacro(taskName.Data());
228 Int_t switchMC[5]={1,1,1,1,1};
229 AliAnalysisTaskSECharmFraction *cFractTask = AddTaskCharmFraction("d0D0",switchMC);
230
231 // attach a private task (not committed)
232 // (the files MyTask.h MyTask.cxx AddMyTask.C have to be declared in plugin
233 // configuration, see below)
234
235 if(analysisMode.Data()=="proof") {
236 gProof->LoadMacro("MyTask.cxx++g");
237 } else {
238 gROOT->LoadMacro("MyTask.cxx++g");
239 }
240 gROOT->LoadMacro("AddMyTask.C");
241 MyTask *myTask = AddMyTask();
242
243
244 if(analysisMode.Data()=="proof") {
245 gProof->LoadMacro("AliDStarJets.cxx++g");
246 } else {
247 gROOT->LoadMacro("AliDStarJets.cxx++g");
248 }
249 gROOT->LoadMacro("AddTaskDStarJets.C");
250 AliDStarJets *myTask = AddTaskDStarJets();
251 */
252 //-------------------------------------------------------------------
253
254 //
255 // Run the analysis
256 //
257 if(chainAOD) printf("CHAIN HAS %d ENTRIES\n",(Int_t)chainAOD->GetEntries());
258
259 if(!mgr->InitAnalysis()) return;
260 mgr->PrintStatus();
261 if(analysisMode=="grid" && !useAlienPlugin) analysisMode="local";
262 if(analysisMode!="proof") {
263 mgr->StartAnalysis(analysisMode.Data(),chainAOD,nentries,firstentry);
264 } else {
265 // proof
266 mgr->StartAnalysis(analysisMode.Data(),dataset.Data(),nentries,firstentry);
267 }
268
269 return;
270}
271//_____________________________________________________________________________
272//
273AliAnalysisGrid* CreateAlienHandler(TString pluginmode="test",Bool_t useParFiles=kFALSE)
274{
275 // Check if user has a valid token, otherwise make one. This has limitations.
276 // One can always follow the standard procedure of calling alien-token-init then
277 // source /tmp/gclient_env_$UID in the current shell.
278 if (!AliAnalysisGrid::CreateToken()) return NULL;
279 AliAnalysisAlien *plugin = new AliAnalysisAlien();
280 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
281 plugin->SetRunMode(pluginmode.Data());
efb0a9e5 282 plugin->SetUser("dainesea");
8931206f 283 plugin->SetNtestFiles(1);
284 // Set versions of used packages
285 plugin->SetAPIVersion("V1.1x");
286 plugin->SetROOTVersion("v5-26-00b-6");
287 plugin->SetAliROOTVersion("v4-19-18-AN");
288 // Declare input data to be processed.
289 // Method 1: Create automatically XML collections using alien 'find' command.
290 // Define production directory LFN
291 // plugin->SetGridDataDir("/alice/cern.ch/user/r/rbala/data_pass4_good_runCINT1B_8thfeb/");
292 //plugin->SetGridDataDir("/alice/sim/PDC_09/LHC09a4/AOD3/");
293 // Set data search pattern
548b94ea 294 plugin->SetGridDataDir("/alice/data/2010/LHC10b");
c01c3aa7 295 plugin->SetDataPattern("pass2/AOD001/*AliAOD.root");
548b94ea 296 plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
efb0a9e5 297 //plugin->SetFriendChainName("deltas/AliAOD.VertexingHF.root");
46627015 298 // Adds only the good runs from the Monalisa Run Condition Table
548b94ea 299 AddGoodRuns(plugin,"LHC10b");
8931206f 300 // ...then add run numbers to be considered
efb0a9e5 301 // plugin->SetMaxMergeFiles(100);
8931206f 302 plugin->SetNrunsPerMaster(100);
efb0a9e5 303 //plugin->SetNumberOfReplicas(2);
8931206f 304 // or
305 //plugin->SetRunRange(529000,529007);
306 // Method 2: Declare existing data files (raw collections, xml collections, root file)
307 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
308 // XML collections added via this method can be combined with the first method if
309 // the content is compatible (using or not tags)
310 //plugin->AddDataFile("/alice/cern.ch/user/r/rbala/newtrain/collection/collection_aod_lhc08w.xml");
311 // plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
312 // Define alien work directory where all files will be copied. Relative to alien $HOME.
313 plugin->SetGridWorkingDir("myHFanalysis");
314 // Declare alien output directory. Relative to working directory.
315 plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
316 // Declare the analysis source files names separated by blancs. To be compiled runtime
317 // using ACLiC on the worker nodes.
318 //plugin->SetAnalysisSource("AliDStarJets.cxx");
319 // Declare all libraries (other than the default ones for the framework. These will be
320 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
321 plugin->SetAdditionalLibs("libPWG3vertexingHF.so libPWG3base.so libPWG3muon.so");
322 // use par files
323 if(useParFiles) {
324 plugin->EnablePackage("STEERBase.par");
325 plugin->EnablePackage("ESD.par");
326 plugin->EnablePackage("AOD.par");
327 plugin->EnablePackage("ANALYSIS.par");
328 plugin->EnablePackage("ANALYSISalice.par");
329 plugin->EnablePackage("CORRFW.par");
330 plugin->EnablePackage("PWG3base.par");
331 plugin->EnablePackage("PWG3vertexingHF.par");
332 plugin->EnablePackage("PWG3muon.par");
333 }
334 plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/PWG3 -I$ALICE_ROOT/PWG3/vertexingHF -g");
335 // Declare the output file names separated by blancs.
336 // (can be like: file.root or file.root@ALICE::Niham::File)
337 plugin->SetDefaultOutputs(kTRUE);
338 //plugin->SetOutputFiles("output.root CmpHF.root CmpHFnt.root D0InvMass.root InvMassDplus.root InvMassDplus_nt1.root InvMassDplus_nt2.root");
339 // Optionally define the files to be archived.
340 // plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:*.root@ALICE::NIHAM::File");
341 // plugin->SetOutputArchive("log_archive.zip:stdout,stderr");
342 // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
343 plugin->SetAnalysisMacro("AnalysisHF.C");
344 // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
345 plugin->SetSplitMaxInputFileNumber(10);
346 // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
347 //plugin->SetMaxInitFailed(5);
348 // Optionally resubmit threshold.
349 //plugin->SetMasterResubmitThreshold(90);
350 // Optionally set time to live (default 30000 sec)
351 //plugin->SetTTL(20000);
352 // Optionally set input format (default xml-single)
353 plugin->SetInputFormat("xml-single");
354 // Optionally modify the name of the generated JDL (default analysis.jdl)
355 plugin->SetJDLName("TaskHF.jdl");
356 // Optionally modify job price (default 1)
357 //plugin->SetPrice(1);
358 // Optionally modify split mode (default 'se')
359 plugin->SetSplitMode("se");
360
361
362 return plugin;
363}
46627015 364//----------------------------------------------------------------------------
365void AddGoodRuns(AliAnalysisAlien* plugin,TString lhcPeriod) {
366 //
367 // Adds good runs from the Monalisa Run Condition Table
368 //
369 plugin->SetRunPrefix("000");
370
371 if(lhcPeriod=="LHC10b") {
b01ef8f7 372 Int_t nruns=33;
373 Int_t runlist[33]={117222, 117220, 117116, 117112, 117109, 117099, 117092, 117086, 117077, 117065, 117063, 117060, 117059, 117054, 117053, 117052, 117050, 117048, 116645, 116643, 116574, 116571, 116562, 116403, 116402, 116288, 116102, 115414, 115401, 115393, 115193, 115186, 114931};
46627015 374
375 for(Int_t k=0;k<nruns;k++){
376 plugin->AddRunNumber(runlist[k]);
377 }
54d54d1a 378 plugin->SetNrunsPerMaster(nruns);
46627015 379 }
380
381 if(lhcPeriod=="LHC10c") {
b01ef8f7 382 Int_t nruns=46;
383 Int_t runlist[46]={120829, 120825, 120824, 120823, 120822, 120821, 120820, 120758, 120750, 120741, 120671, 120617, 120616, 120505, 120504, 120503, 120244, 120079, 120076, 120073, 120072, 120069, 120067, 119862, 119859, 119856, 119853, 119849, 119846, 119845, 119844, 119842, 119841, 119163, 119161, 119159, 119086, 119085, 119084, 119079, 119077, 119067, 119061, 119047, 119041, 119037};
46627015 384
385 for(Int_t k=0;k<nruns;k++){
386 plugin->AddRunNumber(runlist[k]);
387 }
54d54d1a 388 plugin->SetNrunsPerMaster(nruns);
46627015 389 }
390
b01ef8f7 391 if(lhcPeriod=="LHC10dhighmu") { // only runs with high mu
392 Int_t nruns=19;
393 Int_t runlist[19]={124750, 124746, 124702, 124608, 124607, 124606, 124605, 124604, 124381, 124380, 124378, 124367, 124362, 124358, 124355, 124191, 124187, 122375, 122374};
394
395 for(Int_t k=0;k<nruns;k++){
396 plugin->AddRunNumber(runlist[k]);
397 }
398 plugin->SetNrunsPerMaster(nruns);
399 }
400
401 if(lhcPeriod=="LHC10d") { // runs with high mu excluded
402 Int_t nruns=60;
403 Int_t runlist[60]={126437, 126432, 126425, 126424, 126422, 126409, 126408, 126407, 126406, 126405, 126404, 126403, 126359, 126352, 126351, 126350, 126285, 126284, 126283, 126168, 126167, 126160, 126158, 126097, 126090, 126088, 126082, 126081, 126078, 126073, 126008, 126007, 126004, 125855, 125851, 125850, 125849, 125848, 125847, 125844, 125843, 125842, 125633, 125632, 125630, 125628, 125296, 125295, 125186, 125156, 125140, 125139, 125134, 125133, 125101, 125100, 125097, 125085, 125023, 124751};
404
405 for(Int_t k=0;k<nruns;k++){
406 plugin->AddRunNumber(runlist[k]);
407 }
408 plugin->SetNrunsPerMaster(nruns);
409 }
410
411
46627015 412 return;
413}