[u/mrichter/AliRoot.git] / PWG4 / JetTasks / AliAnalysisHelperJetTasks.cxx


#include "TROOT.h"
#include "TKey.h"
#include "TList.h"
#include "TSystem.h"
#include "TH1F.h"
#include "TProfile.h"
#include "THnSparse.h"
#include "TFile.h"
#include "TString.h"
#include "AliMCEvent.h"
#include "AliLog.h"
#include "AliAODJet.h"
#include "AliStack.h"
#include "AliGenEventHeader.h"
#include "AliGenCocktailEventHeader.h"
#include "AliGenPythiaEventHeader.h"
#include <fstream>
#include <iostream>
#include "AliAnalysisHelperJetTasks.h"
#include "TMatrixDSym.h"
#include "TMatrixDSymEigen.h"
#include "TVector.h"

ClassImp(AliAnalysisHelperJetTasks)


AliGenPythiaEventHeader*  AliAnalysisHelperJetTasks::GetPythiaEventHeader(AliMCEvent *mcEvent){
  
  AliGenEventHeader* genHeader = mcEvent->GenEventHeader();
  AliGenPythiaEventHeader* pythiaGenHeader = dynamic_cast<AliGenPythiaEventHeader*>(genHeader);
  if(!pythiaGenHeader){
    // cocktail ??
    AliGenCocktailEventHeader* genCocktailHeader = dynamic_cast<AliGenCocktailEventHeader*>(genHeader);
    
    if (!genCocktailHeader) {
      AliWarningGeneral(Form(" %s:%d",(char*)__FILE__,__LINE__),"Unknown header type (not Pythia or Cocktail)");
      //      AliWarning(Form("%s %d: Unknown header type (not Pythia or Cocktail)",(char*)__FILE__,__LINE__));
      return 0;
    }
    TList* headerList = genCocktailHeader->GetHeaders();
    for (Int_t i=0; i<headerList->GetEntries(); i++) {
      pythiaGenHeader = dynamic_cast<AliGenPythiaEventHeader*>(headerList->At(i));
      if (pythiaGenHeader)
        break;
    }
    if(!pythiaGenHeader){
      AliWarningGeneral(Form(" %s:%d",(char*)__FILE__,__LINE__),"Pythia event header not found");
      return 0;
    }
  }
  return pythiaGenHeader;

}


void AliAnalysisHelperJetTasks::PrintStack(AliMCEvent *mcEvent,Int_t iFirst,Int_t iLast,Int_t iMaxPrint){

  AliStack *stack = mcEvent->Stack();
  if(!stack){
    Printf("%s%d No Stack available",(char*)__FILE__,__LINE__);
    return;
  }

  static Int_t iCount = 0;
  if(iCount>iMaxPrint)return;
  Int_t nStack = stack->GetNtrack();
  if(iLast == 0)iLast = nStack;
  else if(iLast > nStack)iLast = nStack;


  Printf("####################################################################");
  for(Int_t np = iFirst;np<iLast;++np){
    TParticle *p = stack->Particle(np);
    Printf("Nr.%d --- Status %d ---- Mother1 %d Mother2 %d Daughter1 %d Daughter2 %d ",
	   np,p->GetStatusCode(),p->GetMother(0),p->GetMother(1),p->GetDaughter(0),p->GetDaughter(1));
    Printf("Eta %3.3f Phi %3.3f ",p->Eta(),p->Phi()); 
    p->Print();    
    Printf("---------------------------------------");
  }
  iCount++;
}


void AliAnalysisHelperJetTasks::GetClosestJets(AliAODJet *genJets,const Int_t &kGenJets,
					       AliAODJet *recJets,const Int_t &kRecJets,
					       Int_t *iGenIndex,Int_t *iRecIndex,
					       Int_t iDebug,Float_t maxDist){

  //
  // Relate the two input jet Arrays
  //

  //
  // The association has to be unique
  // So check in two directions
  // find the closest rec to a gen
  // and check if there is no other rec which is closer
  // Caveat: Close low energy/split jets may disturb this correlation


  // Idea: search in two directions generated e.g (a--e) and rec (1--3)
  // Fill a matrix with Flags (1 for closest rec jet, 2 for closest rec jet
  // in the end we have something like this
  //    1   2   3
  // ------------
  // a| 3   2   0
  // b| 0   1   0
  // c| 0   0   3
  // d| 0   0   1
  // e| 0   0   1
  // Topology
  //   1     2
  //     a         b        
  //
  //  d      c
  //        3     e
  // Only entries with "3" match from both sides

  // In case we have more jets than kmaxjets only the 
  // first kmaxjets are searched
  // all other are -1
  // use kMaxJets for a test not to fragemnt the memory...

  for(int i = 0;i < kGenJets;++i)iGenIndex[i] = -1;
  for(int j = 0;j < kRecJets;++j)iRecIndex[j] = -1;


  const int kMode = 3;

  const Int_t nGenJets = TMath::Min(kMaxJets,kGenJets);
  const Int_t nRecJets = TMath::Min(kMaxJets,kRecJets);

  if(nRecJets==0||nGenJets==0)return;

  // UShort_t *iFlag = new UShort_t[nGenJets*nRecJets];
  UShort_t iFlag[kMaxJets*kMaxJets];
  for(int i = 0;i < nGenJets;++i){
    for(int j = 0;j < nRecJets;++j){
      iFlag[i*nGenJets+j] = 0;
    }
  }


  // find the closest distance to the generated
  for(int ig = 0;ig<nGenJets;++ig){
    Float_t dist = maxDist;
    if(iDebug>1)Printf("Gen (%d) p_T %3.3f eta %3.3f ph %3.3f ",ig,genJets[ig].Pt(),genJets[ig].Eta(),genJets[ig].Phi());
    for(int ir = 0;ir<nRecJets;++ir){
      Double_t dR = genJets[ig].DeltaR(&recJets[ir]);
      if(iDebug>1)Printf("Rec (%d) p_T %3.3f eta %3.3f ph %3.3f ",ir,recJets[ir].Pt(),recJets[ir].Eta(),recJets[ir].Phi());
      if(iDebug>1)Printf("Distance (%d)--(%d) %3.3f ",ig,ir,dR);
      if(dR<dist){
	iRecIndex[ig] = ir;
	dist = dR;
      }	
    }
    if(iRecIndex[ig]>=0)iFlag[ig*nGenJets+iRecIndex[ig]]+=1;
    // reset...
    iRecIndex[ig] = -1;
  }
  // other way around
  for(int ir = 0;ir<nRecJets;++ir){
    Float_t dist = maxDist;
    for(int ig = 0;ig<nGenJets;++ig){
      Double_t dR = genJets[ig].DeltaR(&recJets[ir]);
      if(dR<dist){
	iGenIndex[ir] = ig;
	dist = dR;
      }	
    }
    if(iGenIndex[ir]>=0)iFlag[iGenIndex[ir]*nGenJets+ir]+=2;
    // reset...
    iGenIndex[ir] = -1;
  }

  // check for "true" correlations

  if(iDebug>1)Printf(">>>>>> Matrix");

  for(int ig = 0;ig<nGenJets;++ig){
    for(int ir = 0;ir<nRecJets;++ir){
      // Print
      if(iDebug>1)printf("Flag[%d][%d] %d ",ig,ir,iFlag[ig*nGenJets+ir]);

      if(kMode==3){
	// we have a uniqie correlation
	if(iFlag[ig*nGenJets+ir]==3){
	  iGenIndex[ir] = ig;
	  iRecIndex[ig] = ir;
	}
      }
      else{
	// we just take the correlation from on side
	if((iFlag[ig*nGenJets+ir]&2)==2){
	  iGenIndex[ir] = ig;
	}
	if((iFlag[ig*nGenJets+ir]&1)==1){
	  iRecIndex[ig] = ir;
	}
      }
    }
    if(iDebug>1)printf("\n");
  }
}


void  AliAnalysisHelperJetTasks::MergeOutput(char* cFiles, char* cList){

  // This is used to merge the analysis-output from different 
  // data samples/pt_hard bins
  // in case the eventweigth was set to xsection/ntrials already, this
  // is not needed. Both methods only work in case we do not mix different 
  // pt_hard bins, and do not have overlapping bins

  const Int_t nMaxBins = 12;
  // LHC08q jetjet100: Mean = 1.42483e-03, RMS = 6.642e-05
  // LHC08r jetjet50: Mean = 2.44068e-02, RMS = 1.144e-03
  // LHC08v jetjet15-50: Mean = 2.168291 , RMS = 7.119e-02
  // const Float_t xsection[nBins] = {2.168291,2.44068e-02};

  Float_t xsection[nMaxBins];
  Float_t nTrials[nMaxBins];
  Float_t sf[nMaxBins];
  TList *lIn[nMaxBins];
  TFile *fIn[nMaxBins];

  ifstream in1;
  in1.open(cFiles);

  char cFile[120];
  Int_t ibTotal = 0;
  while(in1>>cFile){
    fIn[ibTotal] = TFile::Open(cFile);
    lIn[ibTotal] = (TList*)fIn[ibTotal]->Get(cList);
    Printf("Merging file %s",cFile);
    if(!lIn[ibTotal]){
      Printf("%s:%d No list %s found, exiting...",__FILE__,__LINE__,cList);
      fIn[ibTotal]->ls();
      return;
    }
    TH1* hTrials = (TH1F*)lIn[ibTotal]->FindObject("fh1Trials");
    if(!hTrials){
      Printf("%s:%d fh1PtHard_Trials not found in list, exiting...",__FILE__,__LINE__);
      return;
    }
    TProfile* hXsec = (TProfile*)lIn[ibTotal]->FindObject("fh1Xsec");
    if(!hXsec){
      Printf("%s:%d fh1Xsec  not found in list, exiting...",__FILE__,__LINE__);
      return;
    }
    xsection[ibTotal] = hXsec->GetBinContent(1);
    nTrials[ibTotal] = hTrials->Integral();
    sf[ibTotal] = xsection[ibTotal]/ nTrials[ibTotal];
    ibTotal++;
  }

  if(ibTotal==0){
    Printf("%s:%d No files found for mergin, exiting",__FILE__,__LINE__);
    return;
  }

  TFile *fOut = new TFile("allpt.root","RECREATE");
  TList *lOut = new TList();
  lOut->SetName(lIn[0]->GetName());
  // for the start scale all...
  for(int ie = 0; ie < lIn[0]->GetEntries();++ie){
    TH1 *h1Add = 0;
    THnSparse *hnAdd = 0;
    for(int ib = 0;ib < ibTotal;++ib){
      // dynamic cast does not work with cint
      TObject *h = lIn[ib]->At(ie);
      if(h->InheritsFrom("TH1")){
	TH1 *h1 = (TH1*)h;
	if(ib==0){
	  h1Add = (TH1*)h1->Clone(h1->GetName());
	  h1Add->Scale(sf[ib]);
	}
	else{
	  h1Add->Add(h1,sf[ib]);
	}
      }
      else if(h->InheritsFrom("THnSparse")){
	THnSparse *hn = (THnSparse*)h;
	if(ib==0){
	  hnAdd = (THnSparse*)hn->Clone(hn->GetName());
	  hnAdd->Scale(sf[ib]);
	}
	else{
	  hnAdd->Add(hn,sf[ib]);
	}
      }
      

    }// ib
    if(h1Add)lOut->Add(h1Add);
    else if(hnAdd)lOut->Add(hnAdd);
  }
  fOut->cd();
  lOut->Write(lOut->GetName(),TObject::kSingleKey);
  fOut->Close();
}

Bool_t AliAnalysisHelperJetTasks::PythiaInfoFromFile(const char* currFile,Float_t &fXsec,Float_t &fTrials){
  //
  // get the cross section and the trails either from pyxsec.root or from pysec_hists.root
  // This is to called in Notify and should provide the path to the AOD/ESD file

  TString file(currFile);  
  fXsec = 0;
  fTrials = 1;

  if(file.Contains("root_archive.zip#")){
    Ssiz_t pos1 = file.Index("root_archive",12,TString::kExact);
    Ssiz_t pos = file.Index("#",1,pos1,TString::kExact);
    file.Replace(pos+1,20,"");
  }
  else {
    // not an archive take the basename....
    file.ReplaceAll(gSystem->BaseName(file.Data()),"");
  }
  Printf("%s",file.Data());
  
 
  TFile *fxsec = TFile::Open(Form("%s%s",file.Data(),"pyxsec.root")); // problem that we cannot really test the existance of a file in a archive so we have to lvie with open error message from root
  if(!fxsec){
    // next trial fetch the histgram file
    fxsec = TFile::Open(Form("%s%s",file.Data(),"pyxsec_hists.root"));
    if(!fxsec){
	// not a severe condition but inciate that we have no information
      return kFALSE;
    }
    else{
      // find the tlist we want to be independtent of the name so use the Tkey
      TKey* key = (TKey*)fxsec->GetListOfKeys()->At(0); 
      if(!key){
	fxsec->Close();
	return kFALSE;
      }
      TList *list = dynamic_cast<TList*>(key->ReadObj());
      if(!list){
	fxsec->Close();
	return kFALSE;
      }
      fXsec = ((TProfile*)list->FindObject("h1Xsec"))->GetBinContent(1);
      fTrials  = ((TH1F*)list->FindObject("h1Trials"))->GetBinContent(1);
      fxsec->Close();
    }
  } // no tree pyxsec.root
  else {
    TTree *xtree = (TTree*)fxsec->Get("Xsection");
    if(!xtree){
      fxsec->Close();
      return kFALSE;
    }
    UInt_t   ntrials  = 0;
    Double_t  xsection  = 0;
    xtree->SetBranchAddress("xsection",&xsection);
    xtree->SetBranchAddress("ntrials",&ntrials);
    xtree->GetEntry(0);
    fTrials = ntrials;
    fXsec = xsection;
    fxsec->Close();
  }
  return kTRUE;
}

//___________________________________________________________________________________________________________

Bool_t AliAnalysisHelperJetTasks::GetEventShapes(TVector3 &n01, TVector3 * pTrack, Int_t nTracks, Double_t * eventShapes)
{       
  // ***
  // Event shape calculation
  // sona.pochybova@cern.ch

  const Int_t kTracks = 1000;
  if(nTracks>kTracks)return kFALSE;

  //variables for thrust calculation
  TVector3 pTrackPerp[kTracks];
  Double_t psum2 = 0;

  TVector3 psum;
  TVector3 psum02;
  TVector3 psum03;

  Double_t psum1 = 0;
  Double_t psum102 = 0;
  Double_t psum103 = 0;

  Double_t thrust[kTracks];
  Double_t th = -3;
  Double_t thrust02[kTracks];
  Double_t th02 = -4;
  Double_t thrust03[kTracks];
  Double_t th03 = -5;

  //Sphericity calculation variables
  TMatrixDSym m(3);
  Double_t s00 = 0;
  Double_t s01 = 0;
  Double_t s02 = 0;
  
  Double_t s10 = 0;
  Double_t s11 = 0;
  Double_t s12 = 0;
  
  Double_t s20 = 0;
  Double_t s21 = 0;
  Double_t s22 = 0;
  
  Double_t ptot = 0;
  
  Double_t c = -10;

//
//loop for thrust calculation  
//
    
  for(Int_t i = 0; i < nTracks; i++)
    {
      pTrackPerp[i].SetXYZ(pTrack[i].X(), pTrack[i].Y(), 0);
      psum2 += pTrackPerp[i].Mag();
    }

  //additional starting axis    
  TVector3 n02;
  n02 = pTrack[1].Unit();
  n02.SetZ(0.);   
  TVector3 n03;
  n03 = pTrack[2].Unit();
  n03.SetZ(0.);

  //switches for calculating thrust for different starting points
  Int_t switch1 = 1;
  Int_t switch2 = 1;
  Int_t switch3 = 1;

  //indexes for iteration of different starting points
  Int_t l1 = 0;
  Int_t l2 = 0;
  Int_t l3 = 0;

  //maximal number of iterations
  //  Int_t nMaxIter = 100;
 
  for(Int_t k = 0; k < nTracks; k++)
    {  
      
      if(switch1 == 1){
	psum.SetXYZ(0., 0., 0.);
	psum1 = 0;
	for(Int_t i = 0; i < nTracks; i++)
	  {
	    psum1 += (TMath::Abs(n01.Dot(pTrackPerp[i])));
	    if (n01.Dot(pTrackPerp[i]) > 0) psum += pTrackPerp[i];
	    if (n01.Dot(pTrackPerp[i]) < 0) psum -= pTrackPerp[i];
	  }
	thrust[l1] = psum1/psum2;
      }

      if(switch2 == 1){
	psum02.SetXYZ(0., 0., 0.);
	psum102 = 0;
	for(Int_t i = 0; i < nTracks; i++)
	  {
	    psum102 += (TMath::Abs(n02.Dot(pTrackPerp[i])));
	    if (n02.Dot(pTrackPerp[i]) > 0) psum02 += pTrackPerp[i];
	    if (n02.Dot(pTrackPerp[i]) < 0) psum02 -= pTrackPerp[i];
	  }
	thrust02[l2] = psum102/psum2;
      }
      
      if(switch3 == 1){
	psum03.SetXYZ(0., 0., 0.);
	psum103 = 0;
	for(Int_t i = 0; i < nTracks; i++)
	  {
	    psum103 += (TMath::Abs(n03.Dot(pTrackPerp[i])));
	    if (n03.Dot(pTrackPerp[i]) > 0) psum03 += pTrackPerp[i];
	    if (n03.Dot(pTrackPerp[i]) < 0) psum03 -= pTrackPerp[i];
	  }
	thrust03[l3] = psum103/psum2;
      }

      //check whether thrust value converged    
      if(TMath::Abs(th-thrust[l1]) < 10e-7){
      	switch1 = 0;
      }
      
      if(TMath::Abs(th02-thrust02[l2]) < 10e-7){
	switch2 = 0;
      }

      if(TMath::Abs(th03-thrust03[l3]) < 10e-7){
	switch3 = 0;
      }

      //if it didn't, continue with the calculation
      if(switch1 == 1){
	th = thrust[l1]; 
	n01 = psum.Unit();
	l1++;
      }

      if(switch2 == 1){
	th02 = thrust02[l2];
	n02 = psum02.Unit();
	l2++;
      }

      if(switch3 == 1){
	th03 = thrust03[l3];
	n03 = psum03.Unit();
	l3++;
      }

      //if thrust values for all starting direction converged check if to the same value
      if(switch2 == 0 && switch1 == 0 && switch3 == 0){
	if(TMath::Abs(th-th02) < 10e-7 && TMath::Abs(th-th03) < 10e-7 && TMath::Abs(th02-th03) < 10e-7){
	  eventShapes[0] = th;
	  AliInfoGeneral(Form(" %s:%d",(char*)__FILE__,__LINE__),Form("===== THRUST VALUE FOUND AT %d :: %f\n", k, th));
	  break;
	}
	//if they did not, reset switches
	else{
	  switch1 = 1;
	  //	  th = -1.;
	  switch2 = 1;
	  //	  th02 = -2.;
	  switch3 = 1;
	  //	  th03 = -4.;
	}
      }

      //      Printf("========== %d +++ th :: %f=============\n", l1, th);
      //      Printf("========== %d +++ th2 :: %f=============\n", l2, th02);
      //      Printf("========== %d +++ th3 :: %f=============\n", l3, th03);
      
    }

  //if no common limitng value was found, take the maximum and take the corresponding thrust axis
  if(switch1 == 1 && switch2 == 1 && switch3 == 1){
    eventShapes[0] = TMath::Max(thrust[l1-1], thrust02[l2-1]);
    eventShapes[0] = TMath::Max(eventShapes[0], thrust03[l3-1]);
    if(TMath::Abs(eventShapes[0]-thrust[l1-1]) < 10e-7)
      n01 = n01;
    if(TMath::Abs(eventShapes[0]-thrust02[l2-1]) < 10e-7)
      n01 = n02;
    if(TMath::Abs(eventShapes[0]-thrust03[l3-1]) < 10e-7)
      n01 = n03;
    Printf("NO LIMITING VALUE FOUND :: MAXIMUM = %f\n", eventShapes[0]);
  }

//
//other event shapes variables
//
  for(Int_t j = 0; j < nTracks; j++)
    {  
      s00 = s00 + (pTrack[j].Px()*pTrack[j].Px())/pTrack[j].Mag();
      s01 = s01 + (pTrack[j].Px()*pTrack[j].Py())/pTrack[j].Mag();
      s02 = s02 + (pTrack[j].Px()*pTrack[j].Pz())/pTrack[j].Mag();
      
      s10 = s10 + (pTrack[j].Py()*pTrack[j].Px())/pTrack[j].Mag();
      s11 = s11 + (pTrack[j].Py()*pTrack[j].Py())/pTrack[j].Mag();
      s12 = s12 + (pTrack[j].Py()*pTrack[j].Pz())/pTrack[j].Mag();
      
      s20 = s20 + (pTrack[j].Pz()*pTrack[j].Px())/pTrack[j].Mag();
      s21 = s21 + (pTrack[j].Pz()*pTrack[j].Py())/pTrack[j].Mag();
      s22 = s22 + (pTrack[j].Pz()*pTrack[j].Pz())/pTrack[j].Mag();
      
      ptot += pTrack[j].Mag();
    }

  if(ptot > 0.)
    {
      m(0,0) = s00/ptot;
      m(0,1) = s01/ptot;
      m(0,2) = s02/ptot;

      m(1,0) = s10/ptot;
      m(1,1) = s11/ptot;
      m(1,2) = s12/ptot;

      m(2,0) = s20/ptot;
      m(2,1) = s21/ptot;
      m(2,2) = s22/ptot;

      TMatrixDSymEigen eigen(m);
      TVectorD eigenVal = eigen.GetEigenValues();

      Double_t sphericity = (3/2)*(eigenVal(2)+eigenVal(1));
      eventShapes[1] = sphericity;

      Double_t aplanarity = (3/2)*(eigenVal(2));
      eventShapes[2] = aplanarity;

      c = 3*(eigenVal(0)*eigenVal(1)+eigenVal(0)*eigenVal(2)+eigenVal(1)*eigenVal(2));
      eventShapes[3] = c;
    }
  return kTRUE;
}
  

 //__________________________________________________________________________________________________________________________
Commit	Line	Data
f3050824	1
f3050824	2	#include "TROOT.h"
519378fb	3	#include "TKey.h"
f3050824	4	#include "TList.h"
519378fb	5	#include "TSystem.h"
188a1ba9	6	#include "TH1F.h"
	7	#include "TProfile.h"
	8	#include "THnSparse.h"
	9	#include "TFile.h"
519378fb	10	#include "TString.h"
f3050824	11	#include "AliMCEvent.h"
5c047edc	12	#include "AliLog.h"
db6bcb0e	13	#include "AliAODJet.h"
f3050824	14	#include "AliStack.h"
	15	#include "AliGenEventHeader.h"
	16	#include "AliGenCocktailEventHeader.h"
	17	#include "AliGenPythiaEventHeader.h"
	18	#include <fstream>
	19	#include <iostream>
	20	#include "AliAnalysisHelperJetTasks.h"
6f3f79de	21	#include "TMatrixDSym.h"
	22	#include "TMatrixDSymEigen.h"
	23	#include "TVector.h"
f3050824	24
	25	ClassImp(AliAnalysisHelperJetTasks)
	26
	27
	28
	29
	30	AliGenPythiaEventHeader* AliAnalysisHelperJetTasks::GetPythiaEventHeader(AliMCEvent *mcEvent){
	31
	32	AliGenEventHeader* genHeader = mcEvent->GenEventHeader();
	33	AliGenPythiaEventHeader* pythiaGenHeader = dynamic_cast<AliGenPythiaEventHeader*>(genHeader);
	34	if(!pythiaGenHeader){
	35	// cocktail ??
	36	AliGenCocktailEventHeader* genCocktailHeader = dynamic_cast<AliGenCocktailEventHeader*>(genHeader);
	37
	38	if (!genCocktailHeader) {
5c047edc	39	AliWarningGeneral(Form(" %s:%d",(char*)__FILE__,__LINE__),"Unknown header type (not Pythia or Cocktail)");
5c047edc	40	// AliWarning(Form("%s %d: Unknown header type (not Pythia or Cocktail)",(char*)__FILE__,__LINE__));
f3050824	41	return 0;
	42	}
	43	TList* headerList = genCocktailHeader->GetHeaders();
	44	for (Int_t i=0; i<headerList->GetEntries(); i++) {
	45	pythiaGenHeader = dynamic_cast<AliGenPythiaEventHeader*>(headerList->At(i));
	46	if (pythiaGenHeader)
	47	break;
	48	}
	49	if(!pythiaGenHeader){
5c047edc	50	AliWarningGeneral(Form(" %s:%d",(char*)__FILE__,__LINE__),"Pythia event header not found");
f3050824	51	return 0;
	52	}
	53	}
	54	return pythiaGenHeader;
	55
	56	}
	57
	58
	59	void AliAnalysisHelperJetTasks::PrintStack(AliMCEvent *mcEvent,Int_t iFirst,Int_t iLast,Int_t iMaxPrint){
	60
	61	AliStack *stack = mcEvent->Stack();
	62	if(!stack){
	63	Printf("%s%d No Stack available",(char*)__FILE__,__LINE__);
	64	return;
	65	}
	66
	67	static Int_t iCount = 0;
	68	if(iCount>iMaxPrint)return;
	69	Int_t nStack = stack->GetNtrack();
	70	if(iLast == 0)iLast = nStack;
	71	else if(iLast > nStack)iLast = nStack;
	72
	73
	74	Printf("####################################################################");
	75	for(Int_t np = iFirst;np<iLast;++np){
	76	TParticle *p = stack->Particle(np);
	77	Printf("Nr.%d --- Status %d ---- Mother1 %d Mother2 %d Daughter1 %d Daughter2 %d ",
	78	np,p->GetStatusCode(),p->GetMother(0),p->GetMother(1),p->GetDaughter(0),p->GetDaughter(1));
	79	Printf("Eta %3.3f Phi %3.3f ",p->Eta(),p->Phi());
	80	p->Print();
	81	Printf("---------------------------------------");
	82	}
	83	iCount++;
	84	}
	85
	86
db6bcb0e	87
db6bcb0e	88
3dc5a1a4	89	void AliAnalysisHelperJetTasks::GetClosestJets(AliAODJet *genJets,const Int_t &kGenJets,
3dc5a1a4	90	AliAODJet *recJets,const Int_t &kRecJets,
db6bcb0e	91	Int_t iGenIndex,Int_t iRecIndex,
	92	Int_t iDebug,Float_t maxDist){
	93
	94	//
	95	// Relate the two input jet Arrays
	96	//
	97
	98	//
	99	// The association has to be unique
	100	// So check in two directions
	101	// find the closest rec to a gen
	102	// and check if there is no other rec which is closer
	103	// Caveat: Close low energy/split jets may disturb this correlation
	104
3dc5a1a4	105
db6bcb0e	106	// Idea: search in two directions generated e.g (a--e) and rec (1--3)
	107	// Fill a matrix with Flags (1 for closest rec jet, 2 for closest rec jet
	108	// in the end we have something like this
	109	// 1 2 3
	110	// ------------
	111	// a\| 3 2 0
	112	// b\| 0 1 0
	113	// c\| 0 0 3
	114	// d\| 0 0 1
	115	// e\| 0 0 1
	116	// Topology
	117	// 1 2
	118	// a b
	119	//
	120	// d c
	121	// 3 e
	122	// Only entries with "3" match from both sides
3dc5a1a4	123
	124	// In case we have more jets than kmaxjets only the
	125	// first kmaxjets are searched
	126	// all other are -1
	127	// use kMaxJets for a test not to fragemnt the memory...
	128
	129	for(int i = 0;i < kGenJets;++i)iGenIndex[i] = -1;
	130	for(int j = 0;j < kRecJets;++j)iRecIndex[j] = -1;
	131
	132
db6bcb0e	133
	134	const int kMode = 3;
	135
3dc5a1a4	136	const Int_t nGenJets = TMath::Min(kMaxJets,kGenJets);
3dc5a1a4	137	const Int_t nRecJets = TMath::Min(kMaxJets,kRecJets);
db6bcb0e	138
	139	if(nRecJets==0\|\|nGenJets==0)return;
	140
3dc5a1a4	141	// UShort_t iFlag = new UShort_t[nGenJetsnRecJets];
3dc5a1a4	142	UShort_t iFlag[kMaxJets*kMaxJets];
db6bcb0e	143	for(int i = 0;i < nGenJets;++i){
	144	for(int j = 0;j < nRecJets;++j){
	145	iFlag[i*nGenJets+j] = 0;
	146	}
	147	}
	148
	149
	150
	151	// find the closest distance to the generated
	152	for(int ig = 0;ig<nGenJets;++ig){
	153	Float_t dist = maxDist;
	154	if(iDebug>1)Printf("Gen (%d) p_T %3.3f eta %3.3f ph %3.3f ",ig,genJets[ig].Pt(),genJets[ig].Eta(),genJets[ig].Phi());
	155	for(int ir = 0;ir<nRecJets;++ir){
	156	Double_t dR = genJets[ig].DeltaR(&recJets[ir]);
	157	if(iDebug>1)Printf("Rec (%d) p_T %3.3f eta %3.3f ph %3.3f ",ir,recJets[ir].Pt(),recJets[ir].Eta(),recJets[ir].Phi());
	158	if(iDebug>1)Printf("Distance (%d)--(%d) %3.3f ",ig,ir,dR);
	159	if(dR<dist){
	160	iRecIndex[ig] = ir;
	161	dist = dR;
	162	}
	163	}
	164	if(iRecIndex[ig]>=0)iFlag[ig*nGenJets+iRecIndex[ig]]+=1;
	165	// reset...
	166	iRecIndex[ig] = -1;
	167	}
	168	// other way around
	169	for(int ir = 0;ir<nRecJets;++ir){
	170	Float_t dist = maxDist;
	171	for(int ig = 0;ig<nGenJets;++ig){
	172	Double_t dR = genJets[ig].DeltaR(&recJets[ir]);
	173	if(dR<dist){
	174	iGenIndex[ir] = ig;
	175	dist = dR;
	176	}
	177	}
	178	if(iGenIndex[ir]>=0)iFlag[iGenIndex[ir]*nGenJets+ir]+=2;
	179	// reset...
	180	iGenIndex[ir] = -1;
	181	}
	182
	183	// check for "true" correlations
	184
	185	if(iDebug>1)Printf(">>>>>> Matrix");
	186
	187	for(int ig = 0;ig<nGenJets;++ig){
	188	for(int ir = 0;ir<nRecJets;++ir){
	189	// Print
	190	if(iDebug>1)printf("Flag[%d][%d] %d ",ig,ir,iFlag[ig*nGenJets+ir]);
	191
	192	if(kMode==3){
	193	// we have a uniqie correlation
	194	if(iFlag[ig*nGenJets+ir]==3){
	195	iGenIndex[ir] = ig;
	196	iRecIndex[ig] = ir;
	197	}
	198	}
	199	else{
	200	// we just take the correlation from on side
	201	if((iFlag[ig*nGenJets+ir]&2)==2){
	202	iGenIndex[ir] = ig;
	203	}
	204	if((iFlag[ig*nGenJets+ir]&1)==1){
	205	iRecIndex[ig] = ir;
	206	}
207	}
208	}
209	if(iDebug>1)printf("\n");
210	}
db6bcb0e	211	}
	212
	213
	214
188a1ba9	215	void AliAnalysisHelperJetTasks::MergeOutput(char* cFiles, char* cList){
db6bcb0e	216
188a1ba9	217	// This is used to merge the analysis-output from different
	218	// data samples/pt_hard bins
	219	// in case the eventweigth was set to xsection/ntrials already, this
	220	// is not needed. Both methods only work in case we do not mix different
	221	// pt_hard bins, and do not have overlapping bins
db6bcb0e	222
188a1ba9	223	const Int_t nMaxBins = 12;
	224	// LHC08q jetjet100: Mean = 1.42483e-03, RMS = 6.642e-05
	225	// LHC08r jetjet50: Mean = 2.44068e-02, RMS = 1.144e-03
	226	// LHC08v jetjet15-50: Mean = 2.168291 , RMS = 7.119e-02
	227	// const Float_t xsection[nBins] = {2.168291,2.44068e-02};
	228
	229	Float_t xsection[nMaxBins];
	230	Float_t nTrials[nMaxBins];
	231	Float_t sf[nMaxBins];
	232	TList *lIn[nMaxBins];
	233	TFile *fIn[nMaxBins];
	234
	235	ifstream in1;
	236	in1.open(cFiles);
	237
	238	char cFile[120];
	239	Int_t ibTotal = 0;
	240	while(in1>>cFile){
	241	fIn[ibTotal] = TFile::Open(cFile);
	242	lIn[ibTotal] = (TList*)fIn[ibTotal]->Get(cList);
5c047edc	243	Printf("Merging file %s",cFile);
188a1ba9	244	if(!lIn[ibTotal]){
	245	Printf("%s:%d No list %s found, exiting...",__FILE__,__LINE__,cList);
	246	fIn[ibTotal]->ls();
	247	return;
	248	}
	249	TH1* hTrials = (TH1F*)lIn[ibTotal]->FindObject("fh1Trials");
	250	if(!hTrials){
	251	Printf("%s:%d fh1PtHard_Trials not found in list, exiting...",__FILE__,__LINE__);
	252	return;
	253	}
	254	TProfile* hXsec = (TProfile*)lIn[ibTotal]->FindObject("fh1Xsec");
	255	if(!hXsec){
	256	Printf("%s:%d fh1Xsec not found in list, exiting...",__FILE__,__LINE__);
	257	return;
	258	}
	259	xsection[ibTotal] = hXsec->GetBinContent(1);
	260	nTrials[ibTotal] = hTrials->Integral();
	261	sf[ibTotal] = xsection[ibTotal]/ nTrials[ibTotal];
	262	ibTotal++;
	263	}
	264
	265	if(ibTotal==0){
	266	Printf("%s:%d No files found for mergin, exiting",__FILE__,__LINE__);
	267	return;
	268	}
	269
	270	TFile *fOut = new TFile("allpt.root","RECREATE");
	271	TList *lOut = new TList();
	272	lOut->SetName(lIn[0]->GetName());
	273	// for the start scale all...
	274	for(int ie = 0; ie < lIn[0]->GetEntries();++ie){
	275	TH1 *h1Add = 0;
	276	THnSparse *hnAdd = 0;
	277	for(int ib = 0;ib < ibTotal;++ib){
	278	// dynamic cast does not work with cint
	279	TObject *h = lIn[ib]->At(ie);
	280	if(h->InheritsFrom("TH1")){
	281	TH1 h1 = (TH1)h;
	282	if(ib==0){
	283	h1Add = (TH1*)h1->Clone(h1->GetName());
	284	h1Add->Scale(sf[ib]);
	285	}
	286	else{
	287	h1Add->Add(h1,sf[ib]);
	288	}
	289	}
	290	else if(h->InheritsFrom("THnSparse")){
	291	THnSparse hn = (THnSparse)h;
	292	if(ib==0){
	293	hnAdd = (THnSparse*)hn->Clone(hn->GetName());
	294	hnAdd->Scale(sf[ib]);
	295	}
	296	else{
	297	hnAdd->Add(hn,sf[ib]);
	298	}
	299	}
	300
	301
	302	}// ib
	303	if(h1Add)lOut->Add(h1Add);
	304	else if(hnAdd)lOut->Add(hnAdd);
	305	}
	306	fOut->cd();
	307	lOut->Write(lOut->GetName(),TObject::kSingleKey);
308	fOut->Close();
309	}
519378fb	310
	311	Bool_t AliAnalysisHelperJetTasks::PythiaInfoFromFile(const char* currFile,Float_t &fXsec,Float_t &fTrials){
	312	//
	313	// get the cross section and the trails either from pyxsec.root or from pysec_hists.root
	314	// This is to called in Notify and should provide the path to the AOD/ESD file
	315
	316	TString file(currFile);
	317	fXsec = 0;
	318	fTrials = 1;
	319
	320	if(file.Contains("root_archive.zip#")){
	321	Ssiz_t pos1 = file.Index("root_archive",12,TString::kExact);
	322	Ssiz_t pos = file.Index("#",1,pos1,TString::kExact);
	323	file.Replace(pos+1,20,"");
	324	}
	325	else {
	326	// not an archive take the basename....
	327	file.ReplaceAll(gSystem->BaseName(file.Data()),"");
	328	}
	329	Printf("%s",file.Data());
	330
	331
	332
	333
	334	TFile *fxsec = TFile::Open(Form("%s%s",file.Data(),"pyxsec.root")); // problem that we cannot really test the existance of a file in a archive so we have to lvie with open error message from root
	335	if(!fxsec){
	336	// next trial fetch the histgram file
	337	fxsec = TFile::Open(Form("%s%s",file.Data(),"pyxsec_hists.root"));
	338	if(!fxsec){
	339	// not a severe condition but inciate that we have no information
	340	return kFALSE;
	341	}
	342	else{
	343	// find the tlist we want to be independtent of the name so use the Tkey
	344	TKey* key = (TKey*)fxsec->GetListOfKeys()->At(0);
	345	if(!key){
	346	fxsec->Close();
	347	return kFALSE;
	348	}
	349	TList list = dynamic_cast<TList>(key->ReadObj());
	350	if(!list){
	351	fxsec->Close();
	352	return kFALSE;
	353	}
	354	fXsec = ((TProfile*)list->FindObject("h1Xsec"))->GetBinContent(1);
	355	fTrials = ((TH1F*)list->FindObject("h1Trials"))->GetBinContent(1);
	356	fxsec->Close();
	357	}
	358	} // no tree pyxsec.root
	359	else {
	360	TTree xtree = (TTree)fxsec->Get("Xsection");
	361	if(!xtree){
	362	fxsec->Close();
	363	return kFALSE;
	364	}
	365	UInt_t ntrials = 0;
	366	Double_t xsection = 0;
	367	xtree->SetBranchAddress("xsection",&xsection);
	368	xtree->SetBranchAddress("ntrials",&ntrials);
	369	xtree->GetEntry(0);
	370	fTrials = ntrials;
	371	fXsec = xsection;
	372	fxsec->Close();
	373	}
374	return kTRUE;
375	}
6f3f79de	376
6f3f79de	377	//___________________________________________________________________________________________________________
	378
	379	Bool_t AliAnalysisHelperJetTasks::GetEventShapes(TVector3 &n01, TVector3 * pTrack, Int_t nTracks, Double_t * eventShapes)
	380	{
	381	// ***
	382	// Event shape calculation
	383	// sona.pochybova@cern.ch
	384
	385	const Int_t kTracks = 1000;
	386	if(nTracks>kTracks)return kFALSE;
	387
20d01a2f	388	//variables for thrust calculation
6f3f79de	389	TVector3 pTrackPerp[kTracks];
6f3f79de	390	Double_t psum2 = 0;
20d01a2f	391
	392	TVector3 psum;
	393	TVector3 psum02;
	394	TVector3 psum03;
	395
	396	Double_t psum1 = 0;
	397	Double_t psum102 = 0;
	398	Double_t psum103 = 0;
	399
6f3f79de	400	Double_t thrust[kTracks];
6f3f79de	401	Double_t th = -3;
20d01a2f	402	Double_t thrust02[kTracks];
	403	Double_t th02 = -4;
	404	Double_t thrust03[kTracks];
	405	Double_t th03 = -5;
6f3f79de	406
20d01a2f	407	//Sphericity calculation variables
6f3f79de	408	TMatrixDSym m(3);
	409	Double_t s00 = 0;
	410	Double_t s01 = 0;
	411	Double_t s02 = 0;
	412
	413	Double_t s10 = 0;
	414	Double_t s11 = 0;
	415	Double_t s12 = 0;
	416
	417	Double_t s20 = 0;
	418	Double_t s21 = 0;
	419	Double_t s22 = 0;
	420
	421	Double_t ptot = 0;
	422
	423	Double_t c = -10;
	424
	425	//
	426	//loop for thrust calculation
	427	//
20d01a2f	428
	429	for(Int_t i = 0; i < nTracks; i++)
	430	{
	431	pTrackPerp[i].SetXYZ(pTrack[i].X(), pTrack[i].Y(), 0);
	432	psum2 += pTrackPerp[i].Mag();
	433	}
	434
	435	//additional starting axis
	436	TVector3 n02;
	437	n02 = pTrack[1].Unit();
	438	n02.SetZ(0.);
	439	TVector3 n03;
	440	n03 = pTrack[2].Unit();
	441	n03.SetZ(0.);
	442
	443	//switches for calculating thrust for different starting points
	444	Int_t switch1 = 1;
	445	Int_t switch2 = 1;
	446	Int_t switch3 = 1;
	447
	448	//indexes for iteration of different starting points
	449	Int_t l1 = 0;
	450	Int_t l2 = 0;
	451	Int_t l3 = 0;
	452
	453	//maximal number of iterations
	454	// Int_t nMaxIter = 100;
	455
	456	for(Int_t k = 0; k < nTracks; k++)
6f3f79de	457	{
6f3f79de	458
20d01a2f	459	if(switch1 == 1){
	460	psum.SetXYZ(0., 0., 0.);
	461	psum1 = 0;
	462	for(Int_t i = 0; i < nTracks; i++)
	463	{
	464	psum1 += (TMath::Abs(n01.Dot(pTrackPerp[i])));
	465	if (n01.Dot(pTrackPerp[i]) > 0) psum += pTrackPerp[i];
	466	if (n01.Dot(pTrackPerp[i]) < 0) psum -= pTrackPerp[i];
	467	}
	468	thrust[l1] = psum1/psum2;
	469	}
	470
	471	if(switch2 == 1){
	472	psum02.SetXYZ(0., 0., 0.);
	473	psum102 = 0;
	474	for(Int_t i = 0; i < nTracks; i++)
	475	{
	476	psum102 += (TMath::Abs(n02.Dot(pTrackPerp[i])));
	477	if (n02.Dot(pTrackPerp[i]) > 0) psum02 += pTrackPerp[i];
	478	if (n02.Dot(pTrackPerp[i]) < 0) psum02 -= pTrackPerp[i];
	479	}
	480	thrust02[l2] = psum102/psum2;
	481	}
	482
	483	if(switch3 == 1){
	484	psum03.SetXYZ(0., 0., 0.);
	485	psum103 = 0;
	486	for(Int_t i = 0; i < nTracks; i++)
	487	{
	488	psum103 += (TMath::Abs(n03.Dot(pTrackPerp[i])));
	489	if (n03.Dot(pTrackPerp[i]) > 0) psum03 += pTrackPerp[i];
	490	if (n03.Dot(pTrackPerp[i]) < 0) psum03 -= pTrackPerp[i];
	491	}
	492	thrust03[l3] = psum103/psum2;
	493	}
	494
	495	//check whether thrust value converged
	496	if(TMath::Abs(th-thrust[l1]) < 10e-7){
	497	switch1 = 0;
	498	}
	499
	500	if(TMath::Abs(th02-thrust02[l2]) < 10e-7){
	501	switch2 = 0;
	502	}
	503
	504	if(TMath::Abs(th03-thrust03[l3]) < 10e-7){
	505	switch3 = 0;
	506	}
	507
	508	//if it didn't, continue with the calculation
	509	if(switch1 == 1){
	510	th = thrust[l1];
	511	n01 = psum.Unit();
	512	l1++;
	513	}
	514
	515	if(switch2 == 1){
	516	th02 = thrust02[l2];
	517	n02 = psum02.Unit();
	518	l2++;
	519	}
	520
	521	if(switch3 == 1){
	522	th03 = thrust03[l3];
523	n03 = psum03.Unit();
524	l3++;
525	}
526
527	//if thrust values for all starting direction converged check if to the same value
528	if(switch2 == 0 && switch1 == 0 && switch3 == 0){
529	if(TMath::Abs(th-th02) < 10e-7 && TMath::Abs(th-th03) < 10e-7 && TMath::Abs(th02-th03) < 10e-7){
530	eventShapes[0] = th;
e946cd3a	531	AliInfoGeneral(Form(" %s:%d",(char*)__FILE__,__LINE__),Form("===== THRUST VALUE FOUND AT %d :: %f\n", k, th));
20d01a2f	532	break;
	533	}
	534	//if they did not, reset switches
	535	else{
	536	switch1 = 1;
	537	// th = -1.;
	538	switch2 = 1;
	539	// th02 = -2.;
	540	switch3 = 1;
	541	// th03 = -4.;
	542	}
	543	}
	544
	545	// Printf("========== %d +++ th :: %f=============\n", l1, th);
	546	// Printf("========== %d +++ th2 :: %f=============\n", l2, th02);
	547	// Printf("========== %d +++ th3 :: %f=============\n", l3, th03);
6f3f79de	548
6f3f79de	549	}
6f3f79de	550
20d01a2f	551	//if no common limitng value was found, take the maximum and take the corresponding thrust axis
	552	if(switch1 == 1 && switch2 == 1 && switch3 == 1){
	553	eventShapes[0] = TMath::Max(thrust[l1-1], thrust02[l2-1]);
	554	eventShapes[0] = TMath::Max(eventShapes[0], thrust03[l3-1]);
	555	if(TMath::Abs(eventShapes[0]-thrust[l1-1]) < 10e-7)
	556	n01 = n01;
	557	if(TMath::Abs(eventShapes[0]-thrust02[l2-1]) < 10e-7)
	558	n01 = n02;
	559	if(TMath::Abs(eventShapes[0]-thrust03[l3-1]) < 10e-7)
	560	n01 = n03;
	561	Printf("NO LIMITING VALUE FOUND :: MAXIMUM = %f\n", eventShapes[0]);
	562	}
6f3f79de	563
	564	//
	565	//other event shapes variables
	566	//
	567	for(Int_t j = 0; j < nTracks; j++)
	568	{
	569	s00 = s00 + (pTrack[j].Px()*pTrack[j].Px())/pTrack[j].Mag();
	570	s01 = s01 + (pTrack[j].Px()*pTrack[j].Py())/pTrack[j].Mag();
	571	s02 = s02 + (pTrack[j].Px()*pTrack[j].Pz())/pTrack[j].Mag();
	572
	573	s10 = s10 + (pTrack[j].Py()*pTrack[j].Px())/pTrack[j].Mag();
	574	s11 = s11 + (pTrack[j].Py()*pTrack[j].Py())/pTrack[j].Mag();
	575	s12 = s12 + (pTrack[j].Py()*pTrack[j].Pz())/pTrack[j].Mag();
	576
	577	s20 = s20 + (pTrack[j].Pz()*pTrack[j].Px())/pTrack[j].Mag();
	578	s21 = s21 + (pTrack[j].Pz()*pTrack[j].Py())/pTrack[j].Mag();
	579	s22 = s22 + (pTrack[j].Pz()*pTrack[j].Pz())/pTrack[j].Mag();
	580
	581	ptot += pTrack[j].Mag();
	582	}
	583
	584	if(ptot > 0.)
	585	{
	586	m(0,0) = s00/ptot;
	587	m(0,1) = s01/ptot;
	588	m(0,2) = s02/ptot;
	589
	590	m(1,0) = s10/ptot;
	591	m(1,1) = s11/ptot;
	592	m(1,2) = s12/ptot;
	593
	594	m(2,0) = s20/ptot;
	595	m(2,1) = s21/ptot;
	596	m(2,2) = s22/ptot;
	597
	598	TMatrixDSymEigen eigen(m);
	599	TVectorD eigenVal = eigen.GetEigenValues();
	600
	601	Double_t sphericity = (3/2)*(eigenVal(2)+eigenVal(1));
	602	eventShapes[1] = sphericity;
	603
	604	Double_t aplanarity = (3/2)*(eigenVal(2));
	605	eventShapes[2] = aplanarity;
	606
	607	c = 3(eigenVal(0)eigenVal(1)+eigenVal(0)eigenVal(2)+eigenVal(1)eigenVal(2));
	608	eventShapes[3] = c;
	609	}
	610	return kTRUE;
	611	}
	612
	613
	614
	615	//__________________________________________________________________________________________________________________________