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Applying the new standard cuts in the QA Task, run the same task twice with different...
[u/mrichter/AliRoot.git] / PWG4 / macros / AnalysisTrainPWG4Jets.C
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c38e3b95 1//===================== ANALYSIS TRAIN =========================================
2// To use: copy this macro to your work directory, modify the global part to match
3// your needs, then run root.
4// root[0] .L AnalysisTrain.C
5// Grid full mode as below (other modes: test, offline, submit, terminate)
121e4bd5 6// root[1] AnalysisTrainPWG-244Jets("grid", "full")
c38e3b95 7// CAF mode (requires root v5-23-02 + aliroot v4-16-Rev08)
8// root[2] AnalysisTrainPWG4Jets("proof")
9// Local mode requires AliESds.root or AliAOD.root in ./data directory
10// root[3] AnalysisTrainPWG4Jets("local")
11// In proof and grid modes, a token is needed and sourcing the produced environment file.
12//
13// If 'saveTrain' flag is set, the train will generate a directory name and run
14// in this directory. A configuration file 'ConfigTrain.C' will be generated.
15// One can replay at any time the train via:
16// root[1] AnalysisTrainPWG4Jets(ana_mode, plugin_mode, "train_default_<date>/ConfigTrain.C")
17
18// For Usage with fastjet run in "offline" first and then "submit"
19// jdl and analysismacro are automatically patched after "offline" mode
20
21// =============================================================================
22// ### General Steering variables
23// =============================================================================
24//== general setup variables
25TString kTrainName = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
26TString kJobTag = "PWG4 Jet Tasks analysis train configured"; // *CHANGE ME*
27
28// Usage of par files ONLY in grid mode and ONLY if the code is not available
29// in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
30// To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
31// AliRoot.
32Bool_t kUsePAR = kFALSE; // use par files for extra libs
33Bool_t kUseCPAR = kFALSE; // use par files for common libs
34Bool_t kFillAOD = kFALSE; // switch of AOD filling for on the fly analysis
35
36//== general input and output variables
9a5c5b1e 37
c38e3b95 38Int_t iAODanalysis = 1; // Analysis on input AOD's
39Int_t iAODhandler = 1; // Analysis produces an AOD or dAOD's
40Int_t iESDfilter = 0; // ESD to AOD filter (barrel + muon tracks)
e84da0a5 41Int_t iPhysicsSelection = 1; // ESD to AOD filter (barrel + muon tracks)
c38e3b95 42Bool_t kUseKinefilter = kFALSE; // use Kinematics filter
43Bool_t kUseMuonfilter = kFALSE; // use Kinematics filter
44TString kCommonOutputFileName = "PWG4_JetTasksOutput.root";
45
46
47//== general process variables
48
49// ### Other flags to steer the analysis
50//==============================================================================
9a5c5b1e 51Bool_t kSkipTerminate = kTRUE; // Do not call Teminate
c38e3b95 52Bool_t kUseDate = kFALSE; // use date in train name
53Bool_t kUseDebug = kTRUE; // activate debugging
c28abe00 54Int_t kUseSysInfo = 0; // activate debugging
c38e3b95 55Bool_t kUseMC = kTRUE; // use MC info
56Bool_t kIsMC = kTRUE; // is MC info, if false it overwrites Use(AOD)MC
57Bool_t kUseAODMC = kTRUE; // use MC infA
58Bool_t kUseESDTags = kFALSE; // use ESD tags for selection
59Bool_t kUseTR = kFALSE; // use track references
60Bool_t kUseAODTags = kFALSE; // use AOD tags
61Bool_t kSaveTrain = kFALSE; // save train configuration as:
62
9a5c5b1e 63
c38e3b95 64// ### Analysis modules to be included. Some may not be yet fully implemented.
65//==============================================================================
66Int_t iJETAN = 1; // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
67Int_t iDIJETAN = 1;
e6993a52 68Int_t iJETANLib = 1;
c38e3b95 69Int_t iPWG1QASym = 0; // Eva's QA task compiled on the fly...
70Int_t iPWG4JetTasks = 0; // all jet tasks flag for lib laoding
71Int_t iPWG4JetServices = 0; // jet spectrum analysis
72Int_t iPWG4JetSpectrum = 0; // jet spectrum analysis
73Int_t iPWG4UE = 0; // Underlying Event analysis
c166d299 74Int_t iPWG4TmpSourceSara = 0; // Underlying Event analysis not in svn
75Int_t iPWG4TmpSourceFrag = 0; // Bastian's Fragmentation function not in svn
9f77f0ce 76Int_t iPWG4JetChem = 0; // Jet chemistry
c38e3b95 77Int_t iPWG4PtQAMC = 0; // Marta's QA tasks
78Int_t iPWG4PtSpectra = 0; // Marta's QA tasks
79Int_t iPWG4PtQATPC = 0; // Marta's QA tasks
80Int_t iPWG4ThreeJets = 0; // Sona's thrust task
b53f2e4f 81Int_t iPWG4KMeans = 0; // Andreas' KMeans task
d2e6cdd5 82Int_t iPWG4Cluster = 0; // CKB cluster task
911a740f 83Int_t iPWG4PartCorrLibs = 0; // Gustavo's part corr analysis
c38e3b95 84Int_t iPWG4PartCorr = 0; // Gustavo's part corr analysis
d2e6cdd5 85Int_t iPWG4CaloQA = 0; // Gustavo's part corr analysis
86Int_t iPWG4JetCorr = 0; // Paul's jet corr analysis
911a740f 87Int_t iPWG4Tagged = 0; // Gustavo's part corr analysis
121e4bd5 88Int_t iPWG4omega3pi = 0; // Omega to 3 pi analysis (PWG4)
53c63663 89Int_t iPWG4GammaConv = 0; // Gamma Conversio
c38e3b95 90Int_t kHighPtFilterMask = 16; // change depending on the used AOD Filter
e6993a52 91TString kDeltaAODJetName = "AliAOD.Jets.root";
53c63663 92TString kDeltaAODPartCorrName = "deltaAODPartCorr.root";
c38e3b95 93
94
95//==============================================================================
96// ### PROOF Steering varibales
97//==============================================================================
98//== proof setup variables
99TString kProofCluster = "alicecaf.cern.ch";
100Bool_t kProofUseAFPAR = kFALSE; // use AF special par file
101TString kProofAFversion = "AF-v4-17";
102//== proof input and output variables
103TString kProofDataSet = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
104Bool_t kProofSaveToAlien = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
105TString kProofOutdir = "";
106Bool_t kProofClearPackages = kFALSE;
107Int_t kProofEvents = 10000;
108Int_t kProofOffset = 0;
109//== proof process variables
110
111
112//==============================================================================
113// ### Grid plugin Steering varibiables
114//==============================================================================
115//== grid plugin setup variables
116Bool_t kPluginUse = kTRUE; // do not change
117Bool_t kPluginUseProductionMode = kFALSE; // use the plugin in production mode
10295ac3 118TString kPluginRootVersion = "v5-26-00b-4"; // *CHANGE ME IF MORE RECENT IN GRID*
3878a941 119TString kPluginAliRootVersion = "v4-19-04-AN"; // *CHANGE ME IF MORE RECENT IN GRID*
9a5c5b1e 120Bool_t kPluginMergeViaJDL = kTRUE; // merge via JDL
121Bool_t kPluginFastReadOption = kFALSE; // use xrootd tweaks
122Bool_t kPluginOverwriteMode = kTRUE; // overwrite existing collections
dc6a7461 123Int_t kPluginOutputToRunNumber = 1; // write the output to subdirs named after run number
c38e3b95 124// TString kPluginExecutableCommand = "root -b -q";
125TString kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
9a5c5b1e 126
c38e3b95 127// == grid plugin input and output variables
128TString kGridDatadir = "/alice/sim/PDC_08b/LHC09a1/AOD/";
129TString kGridLocalRunList = "";
130TString kGridOutdir = ""; // AliEn output directory. If blank will become output_<kTrainName>
3878a941 131TString kGridDataSet = ""; // sub working directory not to confuse different run xmls
c38e3b95 132Int_t kGridRunRange[2] = {0, -1}; // Set the run range
133TString kGridRunPattern = "%03d"; // important for leading zeroes!!
134TString kGridPassPattern = "";
135TString kGridExtraFiles = ""; // files that will be added to the input list in the JDL...
136Int_t kGridMaxMergeFiles = 50; // Number of files merged in a chunkgridrunragn
137TString kGridMergeExclude = "AliAOD.root"; // Files that should not be merged
6408fe42 138TString kGridOutputStorages = "disk=2"; // Make replicas on the storages
c38e3b95 139// == grid process variables
c28abe00 140Int_t kGridRunsPerMaster = 100; // Number of runs per master job
e84da0a5 141Int_t kGridFilesPerJob = 100; // Maximum number of files per job (gives size of AOD)
c38e3b95 142
143//==============================================================================
144// ### Local Steering variables
145//==============================================================================
146//== local setup variables
147//== local input and output variables
148TString kLocalXMLDataset = ""; // Change local xml dataset for local interactive analysis
149TString kLocalDataList = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
150// == local process variables
151
152
153
154// Temporaries.
155TString anaPars = "";
156TString anaLibs = "";
e84da0a5 157TString anaLibsExtra = "";
c38e3b95 158TString anaSources = "";
159// Function signatures
160class AliAnalysisAlien;
161
162//______________________________________________________________________________
163void AnalysisTrainPWG4Jets(const char *analysis_mode="local",
164 const char *plugin_mode="",
165 const char *config_file="",Int_t iOffset = 0)
166{
167// Main analysis train macro. If a configuration file is provided, all parameters
168// are taken from there but may be altered by CheckModuleFlags.
3878a941 169
c38e3b95 170 if (strlen(config_file) && !LoadConfig(config_file)) return;
3878a941 171
c38e3b95 172 if(iOffset)kProofOffset = iOffset;
173 TString smode(analysis_mode);
174 smode.ToUpper();
175 if (kSaveTrain)WriteConfig();
176 // Check compatibility of selected modules
177 CheckModuleFlags(smode);
e84da0a5 178 // gROOT->ProcessLine(".trace");
c38e3b95 179
180 printf("==================================================================\n");
181 printf("=========== RUNNING ANALYSIS TRAIN %s IN %s MODE ==========\n", kTrainName.Data(),smode.Data());
182 printf("==================================================================\n");
183 printf("= Configuring analysis train for: =\n");
184 if (iAODanalysis) printf("= AOD analysis =\n");
185 else printf("= ESD analysis =\n");
e84da0a5 186 if (iPhysicsSelection) printf("= Physics selection =\n");
c38e3b95 187 if (iESDfilter) printf("= ESD filter =\n");
188 if (iJETAN) printf("= Jet analysis =\n");
189 printf("==================================================================\n");
d2e6cdd5 190 printf(":: use Fill AOD %d\n", (UInt_t)kFillAOD);
c38e3b95 191 printf(":: use MC truth %d\n", (UInt_t)kUseMC);
192 printf(":: use KINE filter %d\n", (UInt_t)kUseKinefilter);
193 printf(":: use track refs %d\n", (UInt_t)kUseTR);
194 printf(":: use tags %d\n", (UInt_t)kUseESDTags);
195 printf(":: use AOD tags %d\n", (UInt_t)kUseAODTags);
196 printf(":: use debugging %d\n", (UInt_t)kUseDebug);
197 printf(":: use PAR files %d\n", (UInt_t)kUsePAR);
198 printf(":: use AliEn plugin %d\n", (UInt_t)kPluginUse);
53c63663 199 printf(":: use PWG1 QA sym %d\n", iPWG1QASym);
121e4bd5 200 printf(":: use PWG4 Source Sara %d\n",iPWG4TmpSourceSara);
c166d299 201 printf(":: use PWG4 Source BB %d\n",iPWG4TmpSourceFrag);
9f77f0ce 202 printf(":: use PWG4 Jet Chem %d\n",iPWG4JetChem);
53c63663 203 printf(":: use PWG4 Jet tasks %d\n",iPWG4JetTasks);
204 printf(":: use PWG4 Jet Services %d\n",iPWG4JetServices);
205 printf(":: use PWG4 Jet Spectrum %d\n",iPWG4JetSpectrum);
206 printf(":: use PWG4 UE %d \n",iPWG4UE);
207 printf(":: use PWG4 Pt QA MC %d\n",iPWG4PtQAMC);
208 printf(":: use PWG4 Pt Spectra %d\n",iPWG4PtSpectra);
209 printf(":: use PWG4 Pt QA TPC %d\n",iPWG4PtQATPC);
210 printf(":: use PWG4 Three Jets %d\n",iPWG4ThreeJets);
b53f2e4f 211 printf(":: use PWG4 KMeans %d\n",iPWG4KMeans);
d2e6cdd5 212 printf(":: use PWG4 Cluster %d\n",iPWG4Cluster);
53c63663 213 printf(":: use PWG4 Part Corr %d\n",iPWG4PartCorr);
d2e6cdd5 214 printf(":: use PWG4 Calo QA %d\n",iPWG4CaloQA);
215 printf(":: use PWG4 Jet Corr %d\n",iPWG4JetCorr);
911a740f 216 printf(":: use PWG4 Tagged %d\n",iPWG4Tagged);
121e4bd5 217 printf(":: use PWG4 omega to 3 pions %d\n",iPWG4omega3pi);
218
53c63663 219 printf(":: use PWG4 Gamma Conv %d\n",iPWG4GammaConv);
220 printf(":: use HighPt FilterMask %d\n",kHighPtFilterMask);
3878a941 221
c38e3b95 222 //==========================================================================
223 // Connect to back-end system
224 if (!Connect(smode)) {
225 ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
226 return;
227 }
228
229 // Load common libraries and set include path
230 if (!LoadCommonLibraries(smode)) {
231 ::Error("AnalysisTrain", "Could not load common libraries");
232 return;
233 }
3878a941 234
235
c38e3b95 236
237 // Make the analysis manager and connect event handlers
e84da0a5 238 AliAnalysisManager *mgr = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
c38e3b95 239 if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
240 if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
4a6f59cb 241 mgr->SetNSysInfo(0);
c38e3b95 242 if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
53c63663 243 if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
9a5c5b1e 244 mgr->SetSkipTerminate(kSkipTerminate);
4a6f59cb 245
c38e3b95 246 // Load analysis specific libraries
247 if (!LoadAnalysisLibraries(smode)) {
248 ::Error("AnalysisTrain", "Could not load analysis libraries");
249 return;
250 }
251
252 // Create input handler (input container created automatically)
253 if (iAODanalysis) {
254 // AOD input handler
255 AliAODInputHandler *aodH = new AliAODInputHandler();
256 mgr->SetInputEventHandler(aodH);
e6993a52 257 if (iPWG4JetTasks) aodH->AddFriend(Form("deltas/%s",kDeltaAODJetName.Data()));
258 if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
c38e3b95 259 } else {
260 // ESD input handler
261 AliESDInputHandler *esdHandler = new AliESDInputHandler();
262 if (kUseESDTags) esdHandler->SetReadTags();
c166d299 263 esdHandler->SetReadFriends(kFALSE);
c38e3b95 264 mgr->SetInputEventHandler(esdHandler);
4a6f59cb 265 // if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
c166d299 266
c38e3b95 267 }
f4d11ac8 268
c38e3b95 269 // Monte Carlo handler
270 if (kUseMC && !iAODanalysis) {
271 AliMCEventHandler* mcHandler = new AliMCEventHandler();
272 mgr->SetMCtruthEventHandler(mcHandler);
273 mcHandler->SetReadTR(kUseTR);
274 }
275 // AOD output container, created automatically when setting an AOD handler
276 if (iAODhandler) {
277 // AOD output handler
278 AliAODHandler* aodHandler = new AliAODHandler();
279 aodHandler->SetOutputFileName("AliAOD.root");
6408fe42 280 aodHandler->SetFillAODforRun(kFillAOD);
c38e3b95 281
282 mgr->SetOutputEventHandler(aodHandler);
121e4bd5 283 //
c38e3b95 284 if (iAODanalysis) {
285
286 // aodHandler->SetCreateNonStandardAOD();
287 // if (iJETAN)aodHandler->SetOutputFileName(kDeltaAODJetName.Data());
288 }
289 AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
290 cout_aod->SetSpecialOutput();
291 }
292 // Debugging if needed
b03b08a3 293
3878a941 294 if (kUseDebug){
295 mgr->SetDebugLevel(3);
296 }
b03b08a3 297 else{
298 AliLog::SetGlobalLogLevel(AliLog::kError);
299 }
c38e3b95 300 //==========================================================================
301 // Create the chain. In this example it is created only from ALIEN files but
302 // can be done to work in batch or grid mode as well.
303 TChain *chain = CreateChain(smode, plugin_mode);
304
305 //==========================================================================
306 // Load the tasks configuration macros for all wagons. These files are supposed now to be
307 // in the current workdir, but in AliEn they will be in the file catalog,
308 // mapped from AliRoot and pecified in the jdl input list.
309
310 // For now connection to top input container and common AOD output container
311 // is done in this macro, but in future these containers will be connected
312 // from each task configuration macro.
e84da0a5 313 if(iPhysicsSelection && !iAODanalysis){
d2e6cdd5 314 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
d8f81b37 315 AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,kTRUE,kTRUE); // last flag also adds information on
e84da0a5 316 }
317
c38e3b95 318 if (iESDfilter && !iAODanalysis) {
319 // ESD filter task configuration.
320 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskESDFilter.C");
321 AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kUseKinefilter,kUseMuonfilter);
322 }
323
324 // AOD tags
325 if (kUseAODTags) {
326 AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
327 mgr->AddTask(tagTask);
328 AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag", TTree::Class(),
329 AliAnalysisManager::kOutputContainer, "AOD.tag.root");
330 mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
331 mgr->ConnectOutput(tagTask, 1, coutTags);
332 }
333
334 // Jet analysis
335 if (iJETAN) {
336 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
337 AliAnalysisTaskJets *taskjets = 0;
338 if(iJETAN&1)taskjets = AddTaskJets(kHighPtFilterMask);
b53f2e4f 339 if(iJETAN&2){
340 UInt_t selection = 0;
d2e6cdd5 341 if(!kFillAOD) selection = 0xffffff; //&~(1<<13);
b53f2e4f 342 else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<6|1<<7|1<<8|1<<9;
343 AddTaskJetsDelta(kDeltaAODJetName.Data(),kHighPtFilterMask,kUseAODMC,selection);
344 }
c38e3b95 345 if (!taskjets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
346 }
347
348 if (iDIJETAN) {
349 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
350 AliAnalysisTaskDiJets *taskdijets = 0;
351 taskdijets = AddTaskDiJets();
352 if (!taskdijets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
353 }
354
c38e3b95 355 if(iPWG1QASym){
99bfd7f7 356 gROOT->LoadMacro("$ALICE_ROOT/PWG1/PWG1macros/AddTaskQAsym.C");
c38e3b95 357 AliAnalysisTaskQASym *taskQASym = AddTaskQAsym(-1);
358 if (!taskQASym) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQASym cannot run for this train conditions - EXCLUDED");
121e4bd5 359 }
c38e3b95 360
121e4bd5 361
362
363 if(iPWG4TmpSourceSara){
364 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskEta.C");
365 AliAnalysisTaskEta *taskEta = AddTaskEta();
366 if (!taskEta) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskEta cannot run for this train conditions - EXCLUDED");
c38e3b95 367 }
368
c166d299 369 if(iPWG4TmpSourceFrag){
370 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragFunc.C");
371 UInt_t selection = 1<<2;
372 AliAnalysisTaskFragFunc *taskFrag = AddTaskFragFunc(kHighPtFilterMask, kUseAODMC,iPhysicsSelection, selection);
373 if (!taskFrag) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskFragFunc cannot run for this train conditions - EXCLUDED");
374 }
375
c580ebbb 376
9f77f0ce 377 if(iPWG4JetChem){
378 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
379 AliAnalysisTask *taskChem = AddTaskJetChem();
c580ebbb 380 if (!taskChem) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
381 }
382
383
c38e3b95 384 if(iPWG4JetServices){
385 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
386 AliAnalysisTaskJetServices *taskjetServ = 0;
387 taskjetServ = AddTaskJetServices();
388 if (!taskjetServ) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
53c63663 389 if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
0971dabc 390 else taskjetServ->SetRunRange(104000,125000);
c28abe00 391 if(!kIsMC) taskjetServ->SetRealData(kTRUE);
dc6a7461 392 taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
9f77f0ce 393 taskjetServ->SetDebugLevel(0);
c38e3b95 394 }
395
c38e3b95 396 if(iPWG4JetSpectrum){
397 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
398 AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
b53f2e4f 399 if(iPWG4JetSpectrum&1){
400 taskjetSpectrum = AddTaskJetSpectrum2("jets","",kHighPtFilterMask,iPhysicsSelection);
e6993a52 401 if(!iAODanalysis){
402 taskjetSpectrum = AddTaskJetSpectrum2("jets","tracks32",32,iPhysicsSelection); // tmp hack to give it a different name
403 taskjetSpectrum = AddTaskJetSpectrum2("jets","tracks64",64,iPhysicsSelection);
404 }
d2e6cdd5 405 if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
3878a941 406 taskjetSpectrum->SetDebugLevel(1);
b53f2e4f 407 }
d2e6cdd5 408
e6993a52 409 if(iPWG4JetSpectrum&2){
410 UInt_t selection = 0;
411 if(!iAODanalysis) selection = 0xffffff;
412 else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
413 AddTaskJetSpectrum2Delta(kHighPtFilterMask,kUseAODMC,iPhysicsSelection,selection);
414 }
9a5c5b1e 415 if(iJETAN==3&&!kFillAOD&!iAODanalysis){
565584e8 416 AddTaskJetSpectrum2("jetsAOD_FASTKT00","",kHighPtFilterMask,iPhysicsSelection);
b53f2e4f 417 AddTaskJetSpectrum2("jetsAOD_FASTKT01","",kHighPtFilterMask,iPhysicsSelection);
418 AddTaskJetSpectrum2("jetsAOD_FASTKT02","",kHighPtFilterMask,iPhysicsSelection);
419 AddTaskJetSpectrum2("jetsAOD_FASTKT06","",kHighPtFilterMask,iPhysicsSelection);
420 AddTaskJetSpectrum2("jetsAOD_FASTKT08","",kHighPtFilterMask,iPhysicsSelection);
565584e8 421 if(kIsMC){
565584e8 422 AddTaskJetSpectrum2("jetsAODMC2b_FASTKT00","",kHighPtFilterMask,iPhysicsSelection);
423 AddTaskJetSpectrum2("jetsAODMC2b_FASTKT01","",kHighPtFilterMask,iPhysicsSelection);
424 AddTaskJetSpectrum2("jetsAODMC2b_FASTKT02","",kHighPtFilterMask,iPhysicsSelection);
425 AddTaskJetSpectrum2("jetsAODMC2b_FASTKT06","",kHighPtFilterMask,iPhysicsSelection);
426 AddTaskJetSpectrum2("jetsAODMC2b_FASTKT08","",kHighPtFilterMask,iPhysicsSelection);
427 }
b53f2e4f 428 }
c38e3b95 429 }
c38e3b95 430 if(iPWG4UE){
431 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskUE.C");
432 AliAnalysisTaskUE *taskUE = 0;
433 if(iPWG4UE&1)taskUE = AddTaskUE();
434 if(iPWG4UE&2){
b03b08a3 435 taskUE = AddTaskUE("jetsAOD_CDF07","CDF","LJ","TRANSV","MSP");
436 taskUE = AddTaskUE("jetsAOD_CDF07","CDF","LJCC","TRANSV","MSP");
437 taskUE = AddTaskUE("jetsAOD_CDF07","CDF","LJ","TRANSV","MAP");
438 taskUE = AddTaskUE("jetsAOD_ICDF","CDF","LJ","TRANSV","MSP");
439 taskUE = AddTaskUE("jetsAOD_ICDF","CDF","LJCC","TRANSV","MSP");
440 taskUE = AddTaskUE("jetsAOD_ICDF","CDF","LJCC","TRANSV","MAP");
441 taskUE = AddTaskUE("jetsAOD_NONE","CDF","MP","TRANSV","MSP");
6408fe42 442 taskUE = AddTaskUE("jetsAOD_NONE","CDF","MP","TRANSV","MAP");
443 taskUE = AddTaskUE("jetsAOD_FASTKT04","CDF","LJ","TRANSV","MSP");
b03b08a3 444 taskUE = AddTaskUE("jetsAOD_FASTKT04","CDF","LJ","TRANSV","MAP");
c38e3b95 445 }
2bb1f4ca 446
c38e3b95 447 if (!taskUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskUE cannot run for this train conditions - EXCLUDED");
448 }
449
450 if(iPWG4ThreeJets){
451 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskThreeJets.C");
452 AliAnalysisTaskThreeJets *taskThree = AddTaskThreeJets();
453 if(!taskThree)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskThreets cannot run for this train conditions - EXCLUDED");
454 }
c38e3b95 455 if(iPWG4PtQAMC){
456 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
457 AliPWG4HighPtQAMC *taskQAMC = AddTaskPWG4HighPtQAMC();
458 if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
459 }
460
461 if(iPWG4PtQATPC){
462 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
10295ac3 463 AliPWG4HighPtQATPConly *taskQATPC = 0;
464 if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(1);
465 if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(2);
466
467 if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
c38e3b95 468 }
3878a941 469
c38e3b95 470 if(iPWG4PtSpectra){
471 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
472 AliPWG4HighPtSpectra *taskPtSpectra = AddTaskPWG4HighPtSpectra();
473 if (!taskPtSpectra) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskPtSpectra cannot run for this train conditions - EXCLUDED");
474 }
b53f2e4f 475 if(iPWG4KMeans){
476 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
477 AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
478 if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
479 }
480
d2e6cdd5 481 if(iPWG4Cluster){
482 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
483 AliAnalysisTaskJetCluster *taskCl = 0;
6408fe42 484 if(iPWG4Cluster&1){
485 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"KT");
6408fe42 486 }
d2e6cdd5 487 if(iPWG4Cluster&2){
488 UInt_t selection = 0;
489 if(!iAODanalysis) selection = 0xffffff;
490 else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
6408fe42 491 AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelection,"KT",selection);
0971dabc 492 }
493 if(iPWG4Cluster&4){
494 UInt_t selection = 0;
495 if(!iAODanalysis) selection = 0xffffff;
496 else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
497 taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"CA");
6408fe42 498 AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelection,"CA",selection);
d2e6cdd5 499 }
0971dabc 500
501
d2e6cdd5 502 if (!taskCl) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
503
504 }
c38e3b95 505 if(iPWG4PartCorr){
506 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
14526afb 507 AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
c38e3b95 508 if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
14526afb 509 AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
c38e3b95 510 if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
511 if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data()); // hmm this is written anyway.... but at least we do not register it...
121e4bd5 512 }
513
d2e6cdd5 514 if(iPWG4CaloQA){
515 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
f4d11ac8 516 AliAnalysisTaskParticleCorrelation *taskcaloQA = AddTaskCalorimeterQA("ESD",kFALSE,kIsMC);
d2e6cdd5 517 if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
518 }
519
d2e6cdd5 520 if(iPWG4JetCorr){
521 // using namespace JetCorrelHD;
522
523 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
524 AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
c166d299 525 if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel cannot run for this train conditions - EXCLUDED");
d2e6cdd5 526 }
527
911a740f 528 if(iPWG4Tagged){
529 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
530 AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
531 // taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
532 if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons cannot run for this train conditions - EXCLUDED");
533 }
121e4bd5 534 if (iPWG4omega3pi) {
535 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
536 AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
537 if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
538 for these train conditions - EXCLUDED");
539 }
540
53c63663 541 // PWG4 gamma conversion analysis
542 if (iPWG4GammaConv) {
543 gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
544 TString cdir = gSystem->WorkingDirectory();
545 gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
546 // TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
d8f81b37 547 TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
53c63663 548 if(!kIsMC)gcArguments += " -mc-off";
549 AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
550 gSystem->ChangeDirectory(cdir);
121e4bd5 551 taskGammaConversion->SelectCollisionCandidates();
53c63663 552 if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
553 }
554
3878a941 555
c38e3b95 556 //==========================================================================
557 // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
558 // Run the analysis
559 //
560 if (kPluginUse) {
561 AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
562 AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
563 }
564
565 if (mgr->InitAnalysis()) {
566 mgr->PrintStatus();
567 // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
e84da0a5 568 if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
c38e3b95 569 TString alien_workdir = gGrid->GetHomeDirectory();
570 if (iAODanalysis) alien_workdir += "analysisAOD";
571 else alien_workdir += "analysisESD";
3878a941 572 if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
c38e3b95 573 AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
e84da0a5 574 printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
c38e3b95 575 alien_workdir.Data(),gridhandler->GetGridOutputDir());
576 TFile::Cp(Form("file:%s.jdl",kTrainName.Data()), Form("alien://%s/%s/%s.jdl",alien_workdir.Data(),
577 gridhandler->GetGridOutputDir(),kTrainName.Data()));
578 }
3878a941 579 AliLog::SetGlobalLogLevel(AliLog::kError);
c166d299 580 if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
581 TFile * fM = TFile::Open("manager_local.root","RECREATE");
582 mgr->Write();
583 fM->Close();
584 }
585
c38e3b95 586 StartAnalysis(smode, chain);
c166d299 587
4a6f59cb 588 if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
589 for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
590 mgr->ProfileTask(i);
591 }
592 }
c38e3b95 593 if (!strcmp(plugin_mode, "offline")&&smode=="GRID"){
e84da0a5 594 // Offline mode path files
595 // PatchJDL();
596 PatchAnalysisMacro();
597 }
c38e3b95 598
e84da0a5 599 if (kSaveTrain && smode=="GRID") {
600 AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
601 TString alien_workdir = gGrid->GetHomeDirectory();
602 if (iAODanalysis) alien_workdir += "analysisAOD";
3878a941 603 else alien_workdir += "analysisESD";
604 if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
e84da0a5 605 // kGridOutdir = gridhandler->GetGridOutputDir();
606 printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
c38e3b95 607 alien_workdir.Data());
e84da0a5 608 if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
609 gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
610 if (strcmp(plugin_mode, "test"))
611 TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
612 }
613 }
c38e3b95 614}
615
616//______________________________________________________________________________
617void StartAnalysis(const char *mode, TChain *chain) {
618// Start analysis.
619 Int_t imode = -1;
620 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
621 if (!strcmp(mode, "LOCAL")) imode = 0;
622 if (!strcmp(mode, "PROOF")) imode = 1;
623 if (!strcmp(mode, "GRID")) imode = 2;
624 switch (imode) {
625 case 0:
626 if (!chain) {
627 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
628 return;
629 }
630 mgr->StartAnalysis(mode, chain);
631 return;
632 case 1:
633 if (!kProofDataSet.Length()) {
634 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
635 return;
636 }
637 mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
638 return;
639 case 2:
640 if (kPluginUse) {
641 if (!mgr->GetGridHandler()) {
642 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
643 return;
644 }
645 mgr->StartAnalysis("grid");
646 } else {
647 if (!chain) {
648 ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
649 return;
650 }
651 mgr->StartAnalysis(mode, chain);
652 }
653 return;
654 }
655}
656
657//______________________________________________________________________________
658void CheckModuleFlags(const char *mode) {
659// Checks selected modules and insure compatibility
660 Int_t imode = -1;
661 if (!strcmp(mode, "LOCAL")) imode = 0;
662 if (!strcmp(mode, "PROOF")) imode = 1;
663 if (!strcmp(mode, "GRID")) imode = 2;
664
665
e84da0a5 666 if (kUseCPAR) {
667 kPluginAliRootVersion = ""; // NO aliroot if we use CPAR
668 }
c38e3b95 669
670 if (imode==1) {
671 if (!kUsePAR) {
672 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
673 kUsePAR = kTRUE;
674 }
675 }
676 if (imode != 2) {
677 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
678 kPluginUse = kFALSE;
679 }
680
681
682 if(!kIsMC){
683 // switch off anthin related to MC
684 kUseMC = 0;
685 kUseAODMC = 0;
686 kUseTR = kFALSE;
687 }
688
689 if (iAODanalysis) {
690 // AOD analysis
691 if (kUseMC)
692 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
693 if (kUseAODTags)
694 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
695 kUseMC = kFALSE;
696 kUseTR = kFALSE;
697 kUseAODTags = kFALSE;
698 if (iESDfilter)
699 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
700 iESDfilter = 0;
e84da0a5 701 if (iPhysicsSelection)
702 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
703 iPhysicsSelection = 0;
c38e3b95 704 if (!iAODhandler) {
705 if (iJETAN)
706 ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
707 iJETAN = 0;
708 iDIJETAN = 0;
709 }
710 // Disable tasks that do not work yet on AOD data
711 if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
712 iPWG4PtQAMC = 0;
713 if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
714 iPWG4PtQATPC = 0;
715 if( iPWG4PtSpectra)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
716 iPWG4PtSpectra = 0;
b53f2e4f 717 if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
718 iPWG4KMeans = 0;
d2e6cdd5 719 if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
720 iPWG4JetCorr = 0;
c38e3b95 721 if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
722 iPWG4PartCorr = 0;
d2e6cdd5 723 if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
724 iPWG4CaloQA = 0;
911a740f 725 if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
726 iPWG4Tagged = 0;
121e4bd5 727 if (iPWG4omega3pi)
728 ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
729 iPWG4omega3pi = 0;
c38e3b95 730 if(iPWG1QASym)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG1 QA Sym disabled in analysis on AOD's");
53c63663 731 if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
732 iPWG4GammaConv = 0;
c38e3b95 733 iPWG1QASym = 0;
734 } else {
735 // ESD analysis
736 if (!kUseMC){
737 kUseTR = kFALSE;
738
739 if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
740 kUseKinefilter = kFALSE;
741 if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
742 iPWG4PtQAMC = 0;
743
744 }
745 if (!kUseTR) {
c166d299 746 if(iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "iPWG4QATPCMC disabled if not reading track references");
b03b08a3 747 iPWG4PtQAMC = 0;
c38e3b95 748 }
e84da0a5 749 if (iJETAN){
750 iESDfilter=1;
751 }
c38e3b95 752 if (!iESDfilter){
753 kUseKinefilter = kFALSE;
754 kUseMuonfilter = kFALSE;
755 }
756 if(!iJETAN){
757 iPWG4JetSpectrum = iPWG4UE = iPWG4ThreeJets = iDIJETAN = 0;
758 }
759 }
9f77f0ce 760 iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4UE||iPWG4PtQAMC||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4ThreeJets||iPWG4JetChem;
d2e6cdd5 761 iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
e6993a52 762 iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
c38e3b95 763 if (iESDfilter) {iAODhandler=1;}
764 if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
765 if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
766
767
768
769}
770
771//______________________________________________________________________________
772Bool_t Connect(const char *mode) {
773// Connect <username> to the back-end system.
774 Int_t imode = -1;
775 if (!strcmp(mode, "LOCAL")) imode = 0;
776 if (!strcmp(mode, "PROOF")) imode = 1;
777 if (!strcmp(mode, "GRID")) imode = 2;
778 TString username = gSystem->Getenv("alien_API_USER");
779 switch (imode) {
780 case 0:
781 break;
782 case 1:
783 if (!username.Length()) {
784 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
785 1. Have called: alien-token-init <username>\n \
786 2. Have called: >source /tmp/gclient_env_$UID");
787 return kFALSE;
788 }
789 ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
790 username.Data(), kProofCluster.Data());
791 gEnv->SetValue("XSec.GSI.DelegProxy", "2");
792// TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
793 TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
794 if (!gProof) {
795 if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
796 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
797 return kFALSE;
798 }
799 if(kProofClearPackages)gProof->ClearPackages();
800
801 if(kProofSaveToAlien){
802 TGrid::Connect("alien://");
803 if (gGrid) {
804 TString homedir = gGrid->GetHomeDirectory();
805 TString workdir = homedir + kTrainName;
806 if (!gGrid->Cd(workdir)) {
807 gGrid->Cd(homedir);
808 if (gGrid->Mkdir(workdir)) {
809 gGrid->Cd(kTrainName);
810 ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
811 }
812 }
813 gGrid->Mkdir("proof_output");
814 gGrid->Cd("proof_output");
815 kProofOutdir = Form("alien://%s", gGrid->Pwd());
816 }
817 }
818 break;
819 case 2:
820 if (!username.Length()) {
821 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
822 1. Have called: alien-token-init <username>\n \
823 2. Have called: >source /tmp/gclient_env_$UID");
824 return kFALSE;
825 }
826 if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
827 ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
828 "When using the AliEn plugin it is preferable to define the \
829 variable alien_CLOSE_SE in your environment.");
830 return kFALSE;
831 }
832 ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
833 username.Data());
834 TGrid::Connect("alien://");
835 if (!gGrid || !gGrid->IsConnected()) return kFALSE;
836 break;
837 default:
838 ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
839 return kFALSE;
840 }
841 ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
842 return kTRUE;
843}
844
845//______________________________________________________________________________
846Bool_t LoadCommonLibraries(const char *mode)
847{
848// Load common analysis libraries.
849 Int_t imode = -1;
850 if (!strcmp(mode, "LOCAL")) imode = 0;
851 if (!strcmp(mode, "PROOF")) imode = 1;
852 if (!strcmp(mode, "GRID")) imode = 2;
853 if (!gSystem->Getenv("ALICE_ROOT")) {
854 ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Analysis train requires that analysis libraries are compiled with a local AliRoot");
855 return kFALSE;
856 }
857 Bool_t success = kTRUE;
858 // ROOT libraries
859 gSystem->Load("libTree.so");
860 gSystem->Load("libGeom.so");
861 gSystem->Load("libVMC.so");
862 gSystem->Load("libPhysics.so");
863
864 // Load framework classes. Par option ignored here.
865 switch (imode) {
866 case 0:
867 case 2:
868 if (kUseCPAR) {
869 success &= LoadLibrary("STEERBase", mode, kTRUE);
870 success &= LoadLibrary("ESD", mode, kTRUE);
871 success &= LoadLibrary("AOD", mode, kTRUE);
872 success &= LoadLibrary("ANALYSIS", mode, kTRUE);
873 success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
874 success &= LoadLibrary("CORRFW", mode, kTRUE);
875 } else {
876 success &= LoadLibrary("libSTEERBase.so", mode);
877 success &= LoadLibrary("libESD.so", mode);
878 success &= LoadLibrary("libAOD.so", mode);
879 success &= LoadLibrary("libANALYSIS.so", mode);
880 success &= LoadLibrary("libANALYSISalice.so", mode);
881 success &= LoadLibrary("libCORRFW.so", mode);
882 gROOT->ProcessLine(".include $ALICE_ROOT/include");
883 }
884 break;
885 case 1:
886 Int_t ires = -1;
887 if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
888 if (ires < 0) {
889 success &= LoadLibrary("STEERBase", mode);
890 success &= LoadLibrary("ESD", mode);
891 success &= LoadLibrary("AOD", mode);
892 success &= LoadLibrary("ANALYSIS", mode);
893 success &= LoadLibrary("ANALYSISalice", mode);
894 success &= LoadLibrary("CORRFW", mode);
895 } else {
896 ires = gProof->EnablePackage(kProofAFversion);
897 if (ires<0) success = kFALSE;
898 success &= LoadLibrary("CORRFW", mode);
899 }
900 break;
901 default:
902 ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
903 return kFALSE;
904 }
905 if (success) {
906 ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries: SUCCESS");
907 ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
908 gSystem->GetIncludePath());
909 } else {
910 ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries: FAILED");
911 }
912
913 return success;
914}
915
916//______________________________________________________________________________
917Bool_t LoadAnalysisLibraries(const char *mode)
918{
919// Load common analysis libraries.
920 Bool_t success = kTRUE;
921 if (iESDfilter) {
922 if (!LoadLibrary("PWG3base", mode, kTRUE) ||
923 !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
924 }
925 // JETAN
e6993a52 926 if (iJETANLib) {
b53f2e4f 927 // this part needs some rework in case we do not need the fastjed finders for processing
928 if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
c38e3b95 929 if (!strcmp(mode, "PROOF")){
ef1e462f 930 gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
c38e3b95 931 gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
932 // problem when loading siscone copiled with different gcc version??
933 // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
934 gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
935 }
b53f2e4f 936 if(!kUsePAR){
e84da0a5 937 if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
938 if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
939 if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
940 if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
941 }
942 else{
943 // par files plus FASTJET needs some extra work... need to change
944 // the loading sequence in the auto generated .C file
945 if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
946 if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
947 if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
948 if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
949 }
c38e3b95 950 if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
951 }
952 if(iPWG4JetTasks){
953 // PWG4 particle correlations
954 if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
955 }
956 if(iPWG1QASym){
99bfd7f7 957 if (!LoadSource(Form("%s/PWG1/AliAnalysisTaskQASym.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
c38e3b95 958 }
121e4bd5 959 if(iPWG4TmpSourceSara){
c166d299 960 if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
121e4bd5 961 if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskEta.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
962 }
c166d299 963 if(iPWG4TmpSourceFrag){
964 if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
965 if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskFragFunc.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
966 }
9f77f0ce 967
968 /*
969 if(iPWG4JetChem){
c580ebbb 970 if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
971 if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskJetChem.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
972 }
9f77f0ce 973 */
c166d299 974
911a740f 975 if (iPWG4PartCorrLibs) {
c38e3b95 976 if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
977 !LoadLibrary("PHOSUtils", mode, kTRUE) ||
978 !LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
979 !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
980 }
d2e6cdd5 981 if (iPWG4JetCorr) {
982 if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
983 }
121e4bd5 984 if (iPWG4omega3pi) {
985 if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
986 }
53c63663 987 if (iPWG4GammaConv) {
988 if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
989 }
c38e3b95 990
991 ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries: SUCCESS");
992 return kTRUE;
993}
994
995//______________________________________________________________________________
996Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
997{
998// Load a module library in a given mode. Reports success.
999 Int_t imode = -1;
1000 Int_t result;
1001 TString smodule(module);
1002 if (!strcmp(mode, "LOCAL")) imode = 0;
1003 if (!strcmp(mode, "PROOF")) imode = 1;
1004 if (!strcmp(mode, "GRID")) imode = 2;
1005 TString mod(module);
1006 if (!mod.Length()) {
1007 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1008 return kFALSE;
1009 }
1010 // If a library is specified, just load it
1011 if (smodule.EndsWith(".so")) {
1012 mod.Remove(mod.Index(".so"));
1013 result = gSystem->Load(mod);
1014 if (result < 0) {
1015 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1016 return kFALSE;
1017 }
1018 if (rec) anaLibs += Form("%s.so ",mod.Data());
e84da0a5 1019 if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
c38e3b95 1020 return kTRUE;
1021 }
1022 // Check if the library is already loaded
1023 if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1024 return kTRUE;
1025 switch (imode) {
1026 case 0:
1027 case 2:
1028 if (kUsePAR) {
1029 result = SetupPar(module);
1030 if (rec) anaPars += Form("%s.par ", module);
1031 } else {
1032 result = gSystem->Load(Form("lib%s.so", module));
1033 if (rec) anaLibs += Form("lib%s.so ", module);
1034 }
1035 break;
1036 case 1:
1037 if(!gSystem->AccessPathName(module)){
1038 ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1039 gSystem->Exec(Form("rm -rf %s",module));
1040 }
1041 result = gProof->UploadPackage(module);
1042 if (result<0) {
1043 result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1044 if (result<0) {
1045 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1046 return kFALSE;
1047 }
1048 }
1049 result = gProof->EnablePackage(module);
1050 break;
1051 default:
1052 return kFALSE;
1053 }
1054 if (result < 0) {
1055 ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1056 return kFALSE;
1057 }
1058 return kTRUE;
1059}
1060
1061
1062
1063//______________________________________________________________________________
1064Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1065{
1066// Load a module library in a given mode. Reports success.
1067 Int_t imode = -1;
1068 Int_t result = -1;
1069 if (!strcmp(mode, "LOCAL")) imode = 0;
1070 if (!strcmp(mode, "PROOF")) imode = 1;
1071 if (!strcmp(mode, "GRID")) imode = 2;
1072 TString ssource(source);
1073 TString basename = gSystem->BaseName(ssource.Data());
1074 if (!ssource.Length()) {
1075 ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1076 return kFALSE;
1077 }
1078 // we have a source code so compile it
1079 if (ssource.EndsWith(".cxx")) {
1080 // need to copy it here other wise the path is also used on grid...
1081 ssource.Remove(ssource.Index(".cxx"));
1082 basename.Remove(basename.Index(".cxx"));
1083 Printf("LoadSources:: Copying... path %s{cxx,h}",ssource.Data());
1084 gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1085 gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1086 // Path to code
1087 // only needed for local compilation, in grid and proof mode
1088 // the task headers are uploaded
1089 // path.Remove(path.Index(gSystem->BaseName(path.Data())));
1090 // Printf("LoadSources:: Including path %s",path.Data());
1091 // if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1092 Printf("LoadSources:: Loading... path %s",basename.Data());
1093 switch (imode) {
1094 case 0:
b53f2e4f 1095 result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
c38e3b95 1096 break;
1097 case 1:
b53f2e4f 1098 result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
c38e3b95 1099 break;
1100 case 2:
b53f2e4f 1101 result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
c38e3b95 1102 if (rec){
1103 // what we want to compile
1104 anaSources += Form("%s.cxx ",basename.Data());
1105 // what we need as input...
1106 anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1107 }
1108 break;
1109 default:
1110 return kFALSE;
1111 }
1112 }
1113 if (result < 0) {
1114 ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1115 return kFALSE;
1116 }
1117 return kTRUE;
1118}
1119
1120
1121//______________________________________________________________________________
1122TChain *CreateChain(const char *mode, const char *plugin_mode)
1123{
1124// Create the input chain
1125 Int_t imode = -1;
1126 if (!strcmp(mode, "LOCAL")) imode = 0;
1127 if (!strcmp(mode, "PROOF")) imode = 1;
1128 if (!strcmp(mode, "GRID")) imode = 2;
1129 TChain *chain = NULL;
1130 // Local chain
1131 switch (imode) {
1132 case 0:
1133 if (iAODanalysis) {
1134 if (!kLocalXMLDataset.Length()) {
1135 // Local AOD
1136 chain = new TChain("aodTree");
1137 TString line;
1138 ifstream in;
1139 in.open(kLocalDataList.Data());
1140 while (in.good()) {
1141 in >> line;
1142 if (line.Length() == 0) continue;
1143 // cout << " line = " << line << endl;
1144 chain->Add(line.Data());
1145 }
1146 } else {
1147 // Interactive AOD
1148 chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
1149 }
1150 } else {
1151 if (!kLocalXMLDataset.Length()) {
1152 // Local ESD
1153 chain = new TChain("esdTree");
1154 TString line;
1155 ifstream in;
1156 in.open(kLocalDataList.Data());
1157 while (in.good()) {
1158 in >> line;
1159 if (line.Length() == 0) continue;
1160 cout << " line = " << line << endl;
1161 chain->Add(line.Data());
1162 }
1163 } else {
1164 // Interactive ESD
1165 chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
1166 }
1167 }
1168 break;
1169 case 1:
1170 break;
1171 case 2:
1172 if (kPluginUse) {
1173// AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1174// AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1175 } else {
1176 TString treeName = "esdTree";
1177 if (iAODanalysis) treeName = "aodTree";
1178 chain = CreateChainSingle("wn.xml", treeName);
1179 }
1180 break;
1181 default:
1182 }
1183 if (chain && chain->GetNtrees()) return chain;
1184 return NULL;
1185}
1186
1187//______________________________________________________________________________
1188TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
1189{
1190 printf("*******************************\n");
1191 printf("*** Getting the ESD Chain ***\n");
1192 printf("*******************************\n");
1193 TAlienCollection * myCollection = TAlienCollection::Open(xmlfile);
1194
1195 if (!myCollection) {
1196 ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
1197 return NULL ;
1198 }
1199
1200 TChain* chain = new TChain(treeName);
1201 myCollection->Reset() ;
1202 while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
1203 chain->ls();
1204 return chain;
1205}
1206
1207//______________________________________________________________________________
1208Int_t SetupPar(char* pararchivename)
1209{
1210 if (!pararchivename || !strlen(pararchivename)) return -1;
1211 char processline[1024];
1212 if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
1213 if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
1214 ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
1215 TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
1216 Form("%s.par",pararchivename));
1217 } else {
1218 ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
1219 return -1;
1220 }
1221 }
1222 if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
1223 gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
1224
1225 TString ocwd = gSystem->WorkingDirectory();
1226 if (!gSystem->ChangeDirectory(pararchivename)) return -1;
1227
1228 // check for BUILD.sh and execute
1229 if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
1230 printf("*******************************\n");
1231 printf("*** Building PAR archive ***\n");
1232 printf("*******************************\n");
1233 if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
1234 Error("runProcess","Cannot Build the PAR Archive! - Abort!");
1235 return -1;
1236 }
1237 }
1238
1239 // check for SETUP.C and execute
1240 if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
1241 printf("*******************************\n");
1242 printf("*** Setup PAR archive ***\n");
1243 printf("*******************************\n");
1244 gROOT->Macro("PROOF-INF/SETUP.C");
1245 }
1246 if (!gSystem->ChangeDirectory(ocwd.Data())) return -1;
1247 return 0;
1248}
1249
1250//______________________________________________________________________________
1251AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
1252{
1253// Check if user has a valid token, otherwise make one. This has limitations.
1254// One can always follow the standard procedure of calling alien-token-init then
1255// source /tmp/gclient_env_$UID in the current shell.
1256 if (!AliAnalysisGrid::CreateToken()) return NULL;
1257 AliAnalysisAlien *plugin = new AliAnalysisAlien();
1258// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
1259 plugin->SetRunMode(plugin_mode);
1260 if (kPluginUseProductionMode) plugin->SetProductionMode();
1261 plugin->SetJobTag(kJobTag);
1262 plugin->SetNtestFiles(2);
1263// plugin->SetPreferedSE("ALICE::NIHAM::File");
1264// Set versions of used packages
e84da0a5 1265 plugin->SetAPIVersion("V1.1x");
1266 // plugin->SetAPIVersion("V1.0x");
1267// plugin->SetAPIVersion("V2.4");
c38e3b95 1268 plugin->SetROOTVersion(kPluginRootVersion);
1269 plugin->SetAliROOTVersion(kPluginAliRootVersion);
1270// Declare input data to be processed.
1271// Method 1: Create automatically XML collections using alien 'find' command.
1272// Define production directory LFN
1273 plugin->SetGridDataDir(kGridDatadir.Data());
1274// Set data search pattern
1275 if (iAODanalysis) plugin->SetDataPattern(" *AliAOD.root");
1276 else plugin->SetDataPattern(Form(" %s/*/*ESD.tag.root",kGridPassPattern.Data()));
1277// ...then add run numbers to be considered
1278// plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
1279 for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
1280 Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
1281 plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
1282 }
1283
1284 if(kGridLocalRunList.Length()>0){
1285 ifstream in1;
1286 in1.open(kGridLocalRunList.Data());
1287 int iRun;
9a5c5b1e 1288
1289 /*
e84da0a5 1290 char c;
1291 char cLine[250];
1292 while(!in1.eof()){
1293 c = in1.get();
1294 if ( (c >= '0') && (c <= '9') )
1295 {
1296 in1.putback (c);
1297 in1>>iRun;
1298 Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1299 plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1300 }
1301 else
1302 {
1303 in1.putback (c);
1304 in1.getline(cLine,250);
9a5c5b1e 1305
1306 }
1307 }
1308 */
1309
1310 // just use run numbers, negatives will be excluded
1311 while(in1>>iRun){
1312 if(iRun>0){
1313 Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1314 plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1315 }
1316 else{
1317 Printf("AnalysisTrainPWG4Jets Skipping run number from File %d", iRun);
e84da0a5 1318 }
c38e3b95 1319 }
1320 }
1321
1322// Method 2: Declare existing data files (raw collections, xml collections, root file)
1323// If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
1324// XML collections added via this method can be combined with the first method if
1325// the content is compatible (using or not tags)
1326// plugin->AddDataFile("tag.xml");
1327// plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
1328// Define alien work directory where all files will be copied. Relative to alien $HOME.
3878a941 1329 TString alien_workdir = "";
1330
1331 if (iAODanalysis) alien_workdir += "analysisAOD";
1332 else alien_workdir += "analysisESD";
1333 if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
1334 plugin->SetGridWorkingDir(alien_workdir.Data());
1335
c38e3b95 1336 // Declare alien output directory. Relative to working directory.
1337 if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1338 plugin->SetGridOutputDir(kGridOutdir);
1339
1340 // Add external packages
1341 if (iJETAN||iDIJETAN) {
1342 plugin->AddExternalPackage("boost::v1_38_0");
1343 plugin->AddExternalPackage("cgal::v3.3.1");
1344 plugin->AddExternalPackage("fastjet::v2.4.0");
1345 }
1346
1347
1348 // set extra libs before par file compilation
1349 anaLibs += kGridExtraFiles;
1350 anaLibs = anaLibs.Strip();
e84da0a5 1351 Printf("anaLibs %s",anaLibs.Data());
1352 Printf("anaLibsExtra %s",anaLibsExtra.Data());
1353
1354 if (anaLibs.Length()) plugin->SetAdditionalLibs(anaLibs.Data());
1355 if (anaLibsExtra.Length()) plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
c38e3b95 1356
1357 TString ana_sources = "";
1358 TString ana_add = "";
1359 if (kUsePAR && anaPars.Length()) {
1360 printf("%s\n", anaPars.Data());
1361 TObjArray *arr;
1362 TObjString *objstr;
1363 arr = anaPars.Tokenize(" ");
1364 TIter next(arr);
1365 while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
1366 delete arr;
1367 }
1368
1369// Declare the analysis source files names separated by blancs. To be compiled runtime
1370// using ACLiC on the worker nodes.
1371 ana_sources = anaSources.Strip();
1372// Declare all libraries (other than the default ones for the framework. These will be
1373// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
1374
1375 if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
1376 plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
1377// Declare the output file names separated by blancs.
1378// (can be like: file.root or file.root@ALICE::Niham::File)
1379 plugin->SetDefaultOutputs();
1380 plugin->SetMergeExcludes(kGridMergeExclude);
1381 plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
1382 plugin->SetNrunsPerMaster(kGridRunsPerMaster);
9a5c5b1e 1383 plugin->SetMergeViaJDL(kPluginMergeViaJDL);
1384// Use fastread option
1385 plugin->SetFastReadOption(kPluginFastReadOption);
1386// UseOverwrite mode
1387 plugin->SetOverwriteMode(kPluginOverwriteMode);
c38e3b95 1388// Optionally define the files to be archived.
1389// plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
dc6a7461 1390 plugin->SetOutputToRunNo(kPluginOutputToRunNumber); // write the output to subdirs named after run number
c38e3b95 1391
1392 // Put default output files to archive
1393 TString listhists = "";
1394 TString listaods = "";
1395 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1396 TIter next(mgr->GetOutputs());
1397 AliAnalysisDataContainer *output;
1398 while ((output=(AliAnalysisDataContainer*)next())) {
1399 const char *filename = output->GetFileName();
1400 if (!(strcmp(filename, "default"))) {
53c63663 1401 if (!mgr->GetOutputEventHandler()) continue;
c38e3b95 1402 filename = mgr->GetOutputEventHandler()->GetOutputFileName();
e84da0a5 1403 if (listaods.Length()) listaods += " ";
c38e3b95 1404 listaods += filename;
c38e3b95 1405 } else {
e84da0a5 1406 if(!listhists.Contains(filename)){
1407 if (listhists.Length()) listhists += " ";
c38e3b95 1408 listhists += filename;
1409 }
1410 }
1411 }
53c63663 1412
c28abe00 1413 if(kUseSysInfo>0){
e84da0a5 1414 if (listhists.Length()) listhists += " ";
c28abe00 1415 listhists += "syswatch.root";
53c63663 1416 }
1417
e84da0a5 1418 if(kIsMC){
1419 if (listaods.Length()) listaods += " ";
1420 listaods += "pyxsec_hists.root";
1421 }
1422
1423
53c63663 1424 if (mgr->GetExtraFiles().Length()) {
e84da0a5 1425 if (listaods.Length()) listaods += " ";
53c63663 1426 listaods += mgr->GetExtraFiles();
c38e3b95 1427 }
53c63663 1428
1429 // if we do not fill the aod we do not need to store it
e84da0a5 1430 kGridMergeExclude = listaods;
1431
1432 if(!kFillAOD){
1433 listaods="";
1434 plugin->SetDefaultOutputs(kFALSE);
1435 plugin->SetOutputFiles(listhists.Data());
1436 }
53c63663 1437
e84da0a5 1438
1439 listaods.ReplaceAll(" ", ",");
1440 listhists.ReplaceAll(" ", ",");
c38e3b95 1441 if (listhists.Length()) listhists = Form("hist_archive.zip:%s@%s", listhists.Data(), kGridOutputStorages.Data());;
1442 if (listaods.Length()) listaods = Form("aod_archive.zip:%s@%s", listaods.Data(), kGridOutputStorages.Data());;
53c63663 1443
c38e3b95 1444 if (!listhists.Length() && !listaods.Length()) {
1445 ::Fatal("AnalysisTrainPWG4Jets", "No task output !");
1446 }
53c63663 1447
e84da0a5 1448
53c63663 1449
b2d64ef3 1450 TString outputArchive = "log_archive.zip:stdout,stderr@ALICE::FZK::SE,ALICE::GSI::SE";
1451 if(kUseSysInfo>0)outputArchive = "log_archive.zip:stdout,stderr,syswatch.log@ALICE::FZK::SE,ALICE::GSI::SE";
c38e3b95 1452 if (listaods.Length()) {
1453 outputArchive += " ";
1454 outputArchive += listaods;
1455 }
1456 if (listhists.Length()) {
1457 outputArchive += " ";
1458 outputArchive += listhists;
1459 }
1460 plugin->SetOutputArchive(outputArchive);
1461// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
1462 plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
1463// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
1464 plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
1465// Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
1466// plugin->SetMaxInitFailed(5);
1467// Optionally resubmit threshold.
1468// plugin->SetMasterResubmitThreshold(90);
1469// Optionally set time to live (default 30000 sec)
1470 plugin->SetTTL(30000);
1471// Optionally set input format (default xml-single)
1472 plugin->SetInputFormat("xml-single");
1473// Optionally modify the name of the generated JDL (default analysis.jdl)
1474 plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
1475// Optionally modify the executable name (default analysis.sh)
1476 plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
1477// Optionally modify job price (default 1)
1478 plugin->SetPrice(1);
1479// Optionally modify split mode (default 'se')
1480 plugin->SetSplitMode("se");
1481 return plugin;
1482}
1483
1484//______________________________________________________________________________
1485void WriteConfig()
1486{
1487// Write train configuration in a file. The file name has the format:
1488// train_[trainName]_ddMonthyyyy_time.C
1489 if (kUseDate) {
1490 gSystem->Exec("date +%d%b%Y_%Hh%M > date.tmp");
1491 ifstream fdate("date.tmp");
1492 if (!fdate.is_open()) {
1493 ::Error("AnalysisTrainPWG4Jets.C::Export","Could not generate file name");
1494 return;
1495 }
1496 const char date[64];
1497 fdate.getline(date,64);
1498 fdate.close();
1499 gSystem->Exec("rm date.tmp");
1500 kTrainName = Form("train_%s_%s", kTrainName.Data(), date);
1501 } else {
1502 kTrainName = Form("train_%s", kTrainName.Data());
1503 }
1504 TString cdir = gSystem->WorkingDirectory();
1505 gSystem->MakeDirectory(kTrainName);
1506 gSystem->ChangeDirectory(kTrainName);
1507 ofstream out;
1508 out.open(Form("%sConfig.C",kTrainName.Data()), ios::out);
1509 if (out.bad()) {
1510 ::Error("AnalysisTrainPWG4Jets.C::Export", "Cannot open ConfigTrain.C for writing");
1511 return;
1512 }
1513 out << "{" << endl;
1514 out << " kTrainName = " << "\"" << kTrainName.Data() << "\";" << endl;
1515 out << " kProofCluster = " << "\"" << kProofCluster.Data() << "\";" << endl;
1516 out << " kProofUseAFPAR = " << kProofUseAFPAR << ";" << endl;
1517 if (kProofUseAFPAR)
1518 out << " kProofAFversion = " << kProofAFversion.Data() << ";" << endl;
1519 out << " kProofDataSet = " << "\"" << kProofDataSet.Data() << "\";" << endl;
1520 out << " kPluginUse = " << kPluginUse << ";" << endl;
1521 out << " kUsePAR = " << kUsePAR << ";" << endl;
1522 out << " kUseCPAR = " << kUseCPAR << ";" << endl;
1523 out << " kPluginRootVersion = " << "\"" << kPluginRootVersion.Data() << "\";" << endl;
1524 out << " kPluginAliRootVersion = " << "\"" << kPluginAliRootVersion.Data() << "\";" << endl;
1525 out << " kGridDatadir = " << "\"" << kGridDatadir.Data() << "\";" << endl;
1526 if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1527 out << " kGridOutdir = " << "\"" << kGridOutdir.Data() << "\";" << endl;
1528 out << " kGridMaxMergeFiles = " << kGridMaxMergeFiles << ";" << endl;
1529 out << " kGridMergeExclude = " << "\"" << kGridMergeExclude.Data() << "\";" << endl;
1530 out << " kGridRunsPerMaster = " << kGridRunsPerMaster << ";" << endl;
1531 out << " kGridFilesPerJob = " << kGridFilesPerJob << ";" << endl;
1532 out << " kGridRunRange[0] = " << kGridRunRange[0] << ";" << endl;
1533 out << " kGridRunRange[1] = " << kGridRunRange[1] << ";" << endl;
1534 out << " kUseDebug = " << kUseDebug << ";" << endl;
1535 out << " kUseMC = " << kUseMC << ";" << endl;
1536 out << " kUseESDTags = " << kUseESDTags << ";" << endl;
1537 out << " kUseKinefilter = " << kUseKinefilter << ";" << endl;
1538 out << " kUseTR = " << kUseTR << ";" << endl;
1539 out << " kUseAODTags = " << kUseAODTags << ";" << endl;
1540 out << " kSaveTrain = " << "kFALSE;" << endl << endl;
1541 out << " // Analysis modules" << endl;
1542 out << " iAODanalysis = " << iAODanalysis << ";" << endl;
1543 out << " iAODhandler = " << iAODhandler << ";" << endl;
1544 out << " iESDfilter = " << iESDfilter << ";" << endl;
1545 out << " iJETAN = " << iJETAN << ";" << endl;
1546 out << "// Configuration fot the wagons" << endl;
1547 out << "}" << endl;
1548 ::Info("AnalysisTrainPWG4Jets.C::WriteConfig", "Train configuration wrote to file %s", Form("config_%s.C", kTrainName.Data()));
1549 gSystem->ChangeDirectory(cdir);
1550}
1551
1552//______________________________________________________________________________
1553Bool_t LoadConfig(const char *filename)
1554{
1555// Read train configuration from file
1556 if (gSystem->AccessPathName(filename)) {
1557 ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
1558 return kFALSE;
1559 }
1560 gROOT->ProcessLine(Form(".x %s", filename));
1561 ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
1562 return kTRUE;
1563}
1564
1565Bool_t PatchJDL(){
1566 Printf(">>> Patching JDL");
1567 AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1568 AliAnalysisAlien* gridHandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1569 TGridJDL *jdl = gridHandler->GetGridJDL();
1570 if(iJETAN)jdl->AddToPackages("fastjet","v2.4.0");
1571 gridHandler->WriteJDL(kFALSE);
0971dabc 1572 Printf("<<< Patching JDL");
c38e3b95 1573 return kTRUE;
1574}
1575
1576Bool_t PatchAnalysisMacro(){
1577 Printf(">>> Patching AnalysisMacro");
1578 gSystem->Exec(Form("mv %s.C %s.C_tmp",kTrainName.Data(),kTrainName.Data()));
1579
1580 ifstream in1;
1581 in1.open(Form("%s.C_tmp", kTrainName.Data()));
1582 char cLine[250];
1583 TString st;
1584 while(in1.getline(cLine,250)){
1585 st += cLine;
1586 st += "\n";
1587 }
1588 Int_t index;
1589 index = st.Index("gSystem->Load(\"libPhysics\");");
1590 index += strlen("gSystem->Load(\"libPhysics\");");
e84da0a5 1591 if(iJETAN&&kUsePAR){
c38e3b95 1592 TObjArray *arr;
1593 TObjString *objstr;
1594 arr = anaLibs.Tokenize(" ");
1595 TIter next(arr);
1596 TString add = "";
1597 add += "\n\n // added by CKB \n";
1598 while ((objstr=(TObjString*)next())){
e84da0a5 1599 if(objstr->GetString().Contains("PWG3"))continue;
c38e3b95 1600 if(objstr->GetString().EndsWith(".so"))add += Form("gSystem->Load(\"%s\");\n",objstr->GetString().Data());
1601 }
1602 delete arr;
3878a941 1603 // add += Form("AliLog::SetGlobalLogLevel(%d);\n",AliLog::GetGlobalLogLevel());
c38e3b95 1604 add += "// BKC \n\n";
1605 st.Insert(index,add.Data());
1606 }
e84da0a5 1607
1608 if(kUseDebug){
1609 st.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
1610 }
1611
c166d299 1612 index = st.Index("gSystem->AddIncludePath");
1613 st.Insert(index,"// CKB ");
1614
c38e3b95 1615 ofstream out;
1616 out.open(Form("%s.C", kTrainName.Data()));
1617 if (out.bad()) {
1618 return kFALSE;
1619 }
1620 out << st << endl;
1621 Printf("<<< Patching AnalysisMacro");
1622 return kTRUE;
1623
1624}