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Commit | Line | Data |
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f7707400 | 1 | #!/bin/bash |
34af53b5 | 2 | if [ ${BASH_VERSINFO} -lt 4 ]; then |
3 | echo "bash version >= 4 needed, you have ${BASH_VERSION}, exiting..." | |
4 | exit 1 | |
5 | fi | |
6 | ||
f7707400 | 7 | main() |
8 | { | |
0c9bef99 | 9 | if [[ -z $1 ]]; then |
0adcf494 | 10 | echo "Usage: " |
11 | echo " ${0##*/} option=value [option=value]" | |
161409c5 | 12 | echo " at least inputList should be specified, or configFile containing it:" |
13 | echo " ${0##*/} inputList=file.list" | |
0adcf494 | 14 | echo " options override config file (if any), e.g.:" |
15 | echo " ${0##*/} configFile=runQA.config inputList=file.list outputDirectory=%det" | |
2c46f154 | 16 | return 1 |
93e1d132 | 17 | fi |
34af53b5 | 18 | |
c8973bf8 | 19 | if ! parseConfig "$@"; then |
0adcf494 | 20 | ${0} |
21 | return 1 | |
22 | fi | |
0c9bef99 | 23 | |
2c46f154 | 24 | [[ -z $ALICE_ROOT ]] && echo "ALICE_ROOT not defined" && return 1 |
93e1d132 | 25 | |
26 | ocdbregex='raw://' | |
2c46f154 | 27 | if [[ ${ocdbStorage} =~ ${ocdbregex} ]]; then |
823d0979 | 28 | alien-token-init ${alienUserName} |
5ed6085c | 29 | #this is a hack! alien-token init seems not enough |
30 | #but the gclient_env script messes up the LD_LIBRARY_PATH | |
31 | while read x; do | |
32 | eval ${x}; | |
33 | done < <(grep -v "LD_LIBRARY_PATH" /tmp/gclient_env_${UID}) | |
2c46f154 | 34 | fi |
0c9bef99 | 35 | |
c8973bf8 | 36 | updateQA "$@" |
f7707400 | 37 | } |
38 | ||
0c9bef99 | 39 | updateQA() |
f7707400 | 40 | { |
41 | umask 0002 | |
c8973bf8 | 42 | parseConfig "$@" |
0adcf494 | 43 | |
44 | #be paranoid and make some full paths | |
0adcf494 | 45 | [[ ! -f ${inputList} ]] && echo "no input list: ${inputList}" && return 1 |
7f49f812 | 46 | inputList=$(get_realpath ${inputList}) |
0adcf494 | 47 | mkdir -p ${workingDirectory} |
7f49f812 | 48 | workingDirectory=$(workingDirectory=${workingDirectory%/}; cd ${workingDirectory%/*}; echo "${PWD}/${workingDirectory##*/}") |
0adcf494 | 49 | if [[ ! -d ${workingDirectory} ]]; then |
50 | echo "working dir $workingDirectory does not exist and cannot be created" | |
51 | return 1 | |
52 | fi | |
53 | cd ${workingDirectory} | |
54 | ||
55 | echo JOB config: | |
56 | echo inputList=$inputList | |
57 | echo outputDirectory=$outputDirectory | |
58 | echo | |
f7707400 | 59 | |
142113c1 | 60 | dateString=$(date +%Y-%m-%d-%H-%M-%S-%N) |
93e1d132 | 61 | echo "Start time QA process: $dateString" |
62 | ||
9cc5d265 | 63 | #logging |
64 | mkdir -p $logDirectory | |
2c46f154 | 65 | [[ ! -d $logDirectory ]] && echo "no log dir $logDirectory" && return 1 |
93e1d132 | 66 | logFile="$logDirectory/${0##*/}.${dateString}.log" |
9cc5d265 | 67 | touch ${logFile} |
2c46f154 | 68 | [[ ! -f ${logFile} ]] && echo "cannot write logfile $logfile" && return 1 |
93e1d132 | 69 | echo "logFile = $logFile" |
9cc5d265 | 70 | |
71 | #check lock | |
a360b7b2 | 72 | lockFile=${workingDirectory}/runQA.lock |
bf4e7ceb | 73 | [[ -f ${lockFile} ]] && echo "lock ${lockFile} exists!" | tee ${logFile} && return 1 |
9cc5d265 | 74 | touch ${lockFile} |
bf4e7ceb | 75 | [[ ! -f ${lockFile} ]] && echo "cannot lock $lockFile" | tee ${logFile} && return 1 |
9cc5d265 | 76 | |
bf4e7ceb | 77 | exec &>${logFile} |
78 | ||
0c9bef99 | 79 | ################################################################ |
80 | #ze detector loop | |
f7707400 | 81 | for detectorScript in $ALICE_ROOT/PWGPP/QA/detectorQAscripts/*; do |
3db1b975 | 82 | echo |
83 | echo "##############################################" | |
244ec455 | 84 | echo $(date) |
bf4e7ceb | 85 | unset planB |
86 | [[ ! ${detectorScript} =~ .*\.sh$ ]] && continue | |
f7707400 | 87 | detector=${detectorScript%.sh} |
88 | detector=${detector##*/} | |
2c46f154 | 89 | |
90 | #skip if excluded | |
c1386fec | 91 | if [[ "${excludeDetectors}" =~ ${detector} ]]; then |
92 | echo "${detector} is excluded in config, skipping..." | |
93 | continue | |
94 | fi | |
2c46f154 | 95 | |
161409c5 | 96 | #if includeDetectors set, only process thoe detectors specified there |
97 | if [[ -n ${includeDetectors} && ! "${includeDetectors}" =~ ${detector} ]]; then | |
98 | echo "${detector} not included in includeDetectors, skipping..." | |
99 | continue | |
100 | fi | |
101 | ||
2c46f154 | 102 | logSummary=${logDirectory}/summary-${detector}-${dateString}.log |
69b2d32e | 103 | hostInfo >> ${logSummary} |
f7707400 | 104 | outputDir=$(substituteDetectorName ${detector} ${outputDirectory}) |
bf4e7ceb | 105 | tmpDetectorRunDir=${workingDirectory}/tmpQAtmpRunDir${detector}-${dateString} |
8e7a87c1 | 106 | if ! mkdir -p ${tmpDetectorRunDir}; then |
107 | echo "cannot create the temp dir $tmpDetectorRunDir" | |
9cc5d265 | 108 | continue |
109 | fi | |
8e7a87c1 | 110 | cd ${tmpDetectorRunDir} |
9cc5d265 | 111 | |
8e7a87c1 | 112 | tmpPrefix=${tmpDetectorRunDir}/${outputDir} |
93e1d132 | 113 | echo "running QA for ${detector}" |
114 | echo " outputDir=$outputDir" | |
115 | echo " tmpPrefix=$tmpPrefix" | |
f7707400 | 116 | |
61fa85ce | 117 | #unset the detector functions from previous iterations (detectors) |
f7707400 | 118 | unset -f runLevelQA |
119 | unset -f periodLevelQA | |
645f513c | 120 | unset -f runLevelHighPtTreeQA |
121 | unset -f periodLevelHighPtTreeQA | |
f7707400 | 122 | source ${detectorScript} |
123 | ||
124 | ################################################################# | |
125 | #produce the QA and trending tree for each file (run) | |
2a6472ef | 126 | unset arrOfTouchedProductions |
127 | declare -A arrOfTouchedProductions | |
f7707400 | 128 | while read qaFile; do |
2c46f154 | 129 | echo |
244ec455 | 130 | echo $(date) |
3db1b975 | 131 | |
132 | #first check if input file exists | |
133 | [[ ! -f ${qaFile%\#*} ]] && echo "file ${qaFile%\#*} not accessible" && continue | |
2c46f154 | 134 | |
0adcf494 | 135 | if ! guessRunData ${qaFile}; then |
136 | echo "could not guess run data from ${qaFile}" | |
137 | continue | |
138 | fi | |
17b0cdcd | 139 | echo "anchorYear for ${originalPeriod} is: ${anchorYear}" |
f7707400 | 140 | |
2a6472ef | 141 | tmpProductionDir=${tmpPrefix}/${dataType}/${year}/${period}/${pass} |
2a6472ef | 142 | tmpRunDir=${tmpProductionDir}/000${runNumber} |
143 | mkdir -p ${tmpRunDir} | |
144 | cd ${tmpRunDir} | |
f7707400 | 145 | |
645f513c | 146 | #by default we expect to have everything in the same archive |
147 | highPtTree=${qaFile} | |
148 | ||
149 | #maybe the input is not an archive, but a file | |
3db1b975 | 150 | [[ "${qaFile}" =~ QAresults.root$ ]] && highPtTree="" |
151 | [[ "${qaFile}" =~ FilterEvents_Trees.root$ ]] && qaFile="" | |
f7707400 | 152 | |
645f513c | 153 | #it is possible we get the highPt trees from somewhere else |
154 | #search the list of high pt trees for the proper run number | |
155 | if [[ -n ${inputListHighPtTrees} ]]; then | |
645f513c | 156 | highPtTree=$(egrep -m1 ${runNumber} ${inputListHighPtTrees}) |
f8619ac0 | 157 | echo "loaded the highPtTree ${highPtTree} from external file ${inputListHighPtTrees}" |
645f513c | 158 | fi |
159 | ||
160 | echo qaFile=$qaFile | |
161 | echo highPtTree=$highPtTree | |
c8973bf8 | 162 | echo ocdbStorage=${ocdbStorage} |
163 | echo | |
645f513c | 164 | |
165 | #what if we have a zip archive? | |
166 | if [[ "$qaFile" =~ .*.zip$ ]]; then | |
167 | if unzip -l ${qaFile} | egrep "QAresults.root" &>/dev/null; then | |
168 | qaFile="${qaFile}#QAresults.root" | |
39488911 | 169 | elif unzip -l ${qaFile} | egrep "QAresults_barrel.root" &>/dev/null; then |
170 | qaFile="${qaFile}#QAresults_barrel.root" | |
645f513c | 171 | else |
172 | qaFile="" | |
173 | fi | |
174 | fi | |
175 | if [[ "$highPtTree" =~ .*.zip$ ]]; then | |
176 | if unzip -l ${highPtTree} | egrep "FilterEvents_Trees.root" &>/dev/null; then | |
177 | highPtTree="${highPtTree}#FilterEvents_Trees.root" | |
178 | else | |
179 | highPtTree="" | |
180 | fi | |
de540baf | 181 | fi |
645f513c | 182 | |
183 | if [[ -n ${qaFile} && $(type -t runLevelQA) =~ "function" ]]; then | |
184 | echo running ${detector} runLevelQA for run ${runNumber} from ${qaFile} | |
185 | runLevelQA "${qaFile}" &> runLevelQA.log | |
186 | #perform some default actions: | |
187 | #if trending.root not created, create a default one | |
188 | if [[ ! -f trending.root ]]; then | |
3db1b975 | 189 | aliroot -b -q -l "$ALICE_ROOT/PWGPP/macros/simpleTrending.C(\"${qaFile}\",${runNumber},\"${detector}\",\"trending.root\",\"trending\",\"recreate\")" 2>&1 | tee -a runLevelQA.log |
190 | fi | |
191 | if [[ -f trending.root ]]; then | |
762f2238 | 192 | #cache the touched production + an example file to guarantee consistent run data parsing |
193 | arrOfTouchedProductions[${tmpProductionDir}]="${qaFile%\#*}" | |
3db1b975 | 194 | else |
195 | echo "trending.root not created" | |
645f513c | 196 | fi |
645f513c | 197 | fi |
198 | #expert QA based on high pt trees | |
199 | if [[ -n ${highPtTree} && $(type -t runLevelHighPtTreeQA) =~ "function" ]]; then | |
200 | echo running ${detector} runLevelHighPtTreeQA for run ${runNumber} from ${highPtTree} | |
201 | runLevelHighPtTreeQA "${highPtTree}" &> runLevelHighPtTreeQA.log | |
202 | arrOfTouchedProductions[${tmpProductionDir}]=1 | |
203 | fi | |
204 | ||
8e7a87c1 | 205 | cd ${tmpDetectorRunDir} |
f7707400 | 206 | |
207 | done < ${inputList} | |
208 | ||
209 | ################################################################# | |
210 | #cache which productions were (re)done | |
93e1d132 | 211 | echo "list of processed productions:" |
2a6472ef | 212 | echo " ${!arrOfTouchedProductions[@]}" |
93e1d132 | 213 | echo |
2a6472ef | 214 | |
f7707400 | 215 | ################################################################# |
bf4e7ceb | 216 | #(re)do the merging/trending |
2a6472ef | 217 | for tmpProductionDir in ${!arrOfTouchedProductions[@]}; do |
bf4e7ceb | 218 | cd ${tmpProductionDir} |
2c46f154 | 219 | echo |
220 | echo "running period level stuff in ${tmpProductionDir}" | |
244ec455 | 221 | echo $(date) |
f7707400 | 222 | |
f7707400 | 223 | productionDir=${outputDir}/${tmpProductionDir#${tmpPrefix}} |
bf4e7ceb | 224 | echo productionDir=${outputDir}/${tmpProductionDir#${tmpPrefix}} |
2c46f154 | 225 | |
f7707400 | 226 | mkdir -p ${productionDir} |
9cc5d265 | 227 | if [[ ! -d ${productionDir} ]]; then |
93e1d132 | 228 | echo "cannot make productionDir $productionDir" && continue |
9cc5d265 | 229 | fi |
f7707400 | 230 | |
bf4e7ceb | 231 | #move runs to final destination |
232 | for dir in ${tmpProductionDir}/000*; do | |
233 | echo | |
93e1d132 | 234 | oldRunDir=${outputDir}/${dir#${tmpPrefix}} |
762f2238 | 235 | if ! guessRunData "${arrOfTouchedProductions[${tmpProductionDir}]}"; then |
0adcf494 | 236 | echo "could not guess run data from ${dir}" |
237 | continue | |
238 | fi | |
2c46f154 | 239 | |
240 | #before moving - VALIDATE!!! | |
bf4e7ceb | 241 | if ! validate ${dir}; then |
242 | continue | |
243 | fi | |
2c46f154 | 244 | |
1aa30209 | 245 | #moving a dir is an atomic operation, no locking necessary |
93e1d132 | 246 | if [[ -d ${oldRunDir} ]]; then |
50864a2d | 247 | echo "removing old ${oldRunDir}" |
93e1d132 | 248 | rm -rf ${oldRunDir} |
249 | fi | |
2c46f154 | 250 | echo "moving new ${runNumber} to ${productionDir}" |
93e1d132 | 251 | mv -f ${dir} ${productionDir} |
252 | done | |
033dacdc | 253 | |
3db1b975 | 254 | #go to a temp dir to do the period level stuff in a completely clean dir |
bf4e7ceb | 255 | tmpPeriodLevelQAdir="${tmpProductionDir}/periodLevelQA" |
256 | echo | |
257 | echo tmpPeriodLevelQAdir="${tmpProductionDir}/periodLevelQA" | |
258 | if ! mkdir -p ${tmpPeriodLevelQAdir}; then continue; fi | |
259 | cd ${tmpPeriodLevelQAdir} | |
260 | ||
261 | #link the final list of per-run dirs here, just the dirs | |
262 | #to have a clean working directory | |
263 | unset linkedStuff | |
264 | declare -a linkedStuff | |
265 | for x in ${productionDir}/000*; do [[ -d $x ]] && ln -s $x && linkedStuff+=(${x##*/}); done | |
bf4e7ceb | 266 | |
8e7a87c1 | 267 | #merge trending files if any |
268 | if /bin/ls 000*/trending.root &>/dev/null; then | |
269 | hadd trending.root 000*/trending.root &> periodLevelQA.log | |
645f513c | 270 | fi |
271 | ||
bf4e7ceb | 272 | #run the period level trending/QA |
645f513c | 273 | if [[ -f "trending.root" && $(type -t periodLevelQA) =~ "function" ]]; then |
274 | echo running ${detector} periodLevelQA for production ${period}/${pass} | |
8e7a87c1 | 275 | periodLevelQA trending.root &>> periodLevelQA.log |
645f513c | 276 | else |
277 | echo "WARNING: not running ${detector} periodLevelQA for production ${period}/${pass}, no trending.root" | |
8e7a87c1 | 278 | fi |
279 | ||
2c46f154 | 280 | if ! validate ${PWD}; then continue; fi |
2c46f154 | 281 | |
bf4e7ceb | 282 | #here we are validated so move the produced QA to the final place |
283 | #clean up linked stuff first | |
284 | [[ -n ${linkedStuff[@]} ]] && rm ${linkedStuff[@]} | |
1aa30209 | 285 | periodLevelLock=${productionDir}/runQA.lock |
286 | if [[ ! -f ${periodLevelLock} ]]; then | |
287 | #some of the output could be a directory, so handle that | |
288 | #TODO: maybe use rsync? | |
289 | #lock to avoid conflicts: | |
290 | echo "${HOSTNAME} ${dateString}" > ${periodLevelLock} | |
291 | for x in ${tmpPeriodLevelQAdir}/*; do | |
292 | if [[ -d ${x} ]]; then | |
293 | echo "removing ${productionDir}/${x##*/}" | |
294 | rm -rf ${productionDir}/${x##*/} | |
295 | echo "moving ${x} to ${productionDir}" | |
296 | mv ${x} ${productionDir} | |
297 | fi | |
298 | if [[ -f ${x} ]]; then | |
299 | echo "moving ${x} to ${productionDir}" | |
300 | mv -f ${x} ${productionDir} | |
301 | fi | |
302 | done | |
303 | rm -f ${periodLevelLock} | |
304 | #remove the temp dir | |
305 | rm -rf ${tmpPeriodLevelQAdir} | |
306 | else | |
56af0297 | 307 | echo "ERROR: cannot move to destination" >> ${logSummary} |
308 | echo "production dir ${productionDir} locked!" >> ${logSummary} | |
309 | echo "check and maybe manually do:" >> ${logSummary} | |
310 | echo " rm ${periodLevelLock}" >> ${logSummary} | |
311 | echo " rsync -av ${tmpPeriodLevelQAdir}/ ${productionDir}/" >> ${logSummary} | |
c38409ba | 312 | planB=1 |
1aa30209 | 313 | fi |
bf4e7ceb | 314 | |
f7707400 | 315 | done |
316 | ||
9cc5d265 | 317 | cd ${workingDirectory} |
2c46f154 | 318 | |
319 | if [[ -z ${planB} ]]; then | |
9a5f8a19 | 320 | echo |
8e7a87c1 | 321 | echo removing ${tmpDetectorRunDir} |
322 | rm -rf ${tmpDetectorRunDir} | |
2c46f154 | 323 | else |
324 | executePlanB | |
325 | fi | |
3db1b975 | 326 | done #end of detector loop |
f7707400 | 327 | |
9cc5d265 | 328 | #remove lock |
329 | rm -f ${lockFile} | |
f7707400 | 330 | } |
331 | ||
2c46f154 | 332 | executePlanB() |
333 | { | |
334 | #in case of emergency | |
335 | if [[ -n ${MAILTO} ]]; then | |
336 | echo | |
337 | echo "trouble detected, sending email to ${MAILTO}" | |
69b2d32e | 338 | cat ${logSummary} | mail -s "qa in need of assistance" ${MAILTO} |
2c46f154 | 339 | fi |
340 | } | |
341 | ||
342 | validate() | |
343 | { | |
344 | summarizeLogs ${1} >> ${logSummary} | |
345 | logStatus=$? | |
346 | if [[ ${logStatus} -ne 0 ]]; then | |
347 | echo "WARNING not validated: ${1}" | |
348 | planB=1 | |
349 | return 1 | |
350 | fi | |
351 | return 0 | |
352 | } | |
353 | ||
354 | summarizeLogs() | |
355 | { | |
356 | local dir=$1 | |
2a6472ef | 357 | [[ ! -d ${dir} ]] && dir=${PWD} |
2c46f154 | 358 | |
359 | #print a summary of logs | |
360 | logFiles=( | |
361 | "*.log" | |
362 | "stdout" | |
363 | "stderr" | |
364 | ) | |
365 | ||
366 | #check logs | |
367 | local logstatus=0 | |
368 | for log in ${dir}/${logFiles[*]}; do | |
2c46f154 | 369 | [[ ! -f ${log} ]] && continue |
370 | errorSummary=$(validateLog ${log}) | |
371 | validationStatus=$? | |
372 | [[ validationStatus -ne 0 ]] && logstatus=1 | |
373 | if [[ ${validationStatus} -eq 0 ]]; then | |
374 | #in pretend mode randomly report an error in rec.log some cases | |
375 | if [[ -n ${pretend} && "${log}" == "rec.log" ]]; then | |
69b2d32e | 376 | [[ $(( ${RANDOM}%2 )) -ge 1 ]] && echo "${log} BAD random error" || echo "${log} OK" |
2c46f154 | 377 | else |
69b2d32e | 378 | echo "${log} OK" |
2c46f154 | 379 | fi |
380 | elif [[ ${validationStatus} -eq 1 ]]; then | |
69b2d32e | 381 | echo "${log} BAD ${errorSummary}" |
2c46f154 | 382 | elif [[ ${validationStatus} -eq 2 ]]; then |
69b2d32e | 383 | echo "${log} OK MWAH ${errorSummary}" |
2c46f154 | 384 | fi |
385 | done | |
386 | ||
387 | #report core files | |
388 | while read x; do | |
389 | echo ${x} | |
390 | chmod 644 ${x} | |
391 | gdb --batch --quiet -ex "bt" -ex "quit" aliroot ${x} > stacktrace_${x//\//_}.log | |
392 | done < <(/bin/ls ${PWD}/*/core 2>/dev/null; /bin/ls ${PWD}/core 2>/dev/null) | |
393 | ||
394 | return ${logstatus} | |
395 | } | |
396 | ||
397 | validateLog() | |
398 | { | |
399 | log=${1} | |
400 | errorConditions=( | |
401 | 'There was a crash' | |
402 | 'floating' | |
403 | 'error while loading shared libraries' | |
404 | 'std::bad_alloc' | |
405 | 's_err_syswatch_' | |
406 | 'Thread [0-9]* (Thread' | |
407 | 'AliFatal' | |
408 | 'core dumped' | |
409 | '\.C.*error:.*\.h: No such file' | |
410 | 'segmentation' | |
645f513c | 411 | 'Interpreter error recovered' |
2c46f154 | 412 | ) |
413 | ||
414 | warningConditions=( | |
415 | 'This is serious' | |
416 | ) | |
417 | ||
418 | local logstatus=0 | |
419 | local errorSummary="" | |
420 | local warningSummary="" | |
421 | ||
422 | for ((i=0; i<${#errorConditions[@]};i++)); do | |
423 | local tmp=$(grep -m1 -e "${errorConditions[${i}]}" ${log}) | |
424 | [[ -n ${tmp} ]] && tmp+=" : " | |
425 | errorSummary+=${tmp} | |
426 | done | |
427 | ||
428 | for ((i=0; i<${#warningConditions[@]};i++)); do | |
429 | local tmp=$(grep -m1 -e "${warningConditions[${i}]}" ${log}) | |
430 | [[ -n ${tmp} ]] && tmp+=" : " | |
431 | warningSummary+=${tmp} | |
432 | done | |
433 | ||
434 | if [[ -n ${errorSummary} ]]; then | |
435 | echo "${errorSummary}" | |
436 | return 1 | |
437 | fi | |
438 | ||
439 | if [[ -n ${warningSummary} ]]; then | |
440 | echo "${warningSummary}" | |
441 | return 2 | |
442 | fi | |
443 | ||
444 | return 0 | |
445 | } | |
446 | ||
f7707400 | 447 | parseConfig() |
448 | { | |
d56eeaab | 449 | args=("$@") |
450 | ||
0adcf494 | 451 | #config file |
452 | configFile="" | |
453 | #where to search for qa files | |
454 | inputList=file.list | |
455 | #working directory | |
456 | workingDirectory="${PWD}" | |
457 | #where to place the final qa plots | |
458 | #outputDirectory="/afs/cern.ch/work/a/aliqa%det/www/" | |
459 | outputDirectory="${workingDirectory}/%DET" | |
460 | #filter out detector option | |
461 | excludeDetectors="EXAMPLE" | |
462 | #logs | |
463 | logDirectory=${workingDirectory}/logs | |
0adcf494 | 464 | #OCDB storage |
b001e589 | 465 | ocdbStorage="raw://" |
0adcf494 | 466 | #email to |
467 | #MAILTO="fbellini@cern.ch" | |
468 | ||
469 | #first, check if the config file is configured | |
470 | #is yes - source it so that other options can override it | |
471 | #if any | |
d56eeaab | 472 | for opt in "${args[@]}"; do |
0adcf494 | 473 | if [[ ${opt} =~ configFile=.* ]]; then |
474 | eval "${opt}" | |
7f49f812 | 475 | [[ ! -f ${configFile} ]] && echo "configFile ${configFile} not found, exiting..." && return 1 |
d56eeaab | 476 | echo "using config file: ${configFile}" |
0adcf494 | 477 | source "${configFile}" |
478 | break | |
479 | fi | |
480 | done | |
f7707400 | 481 | |
482 | #then, parse the options as they override the options from file | |
d56eeaab | 483 | for opt in "${args[@]}"; do |
484 | if [[ ! "${opt}" =~ .*=.* ]]; then | |
0adcf494 | 485 | echo "badly formatted option ${var}, should be: option=value, stopping..." |
486 | return 1 | |
487 | fi | |
d56eeaab | 488 | local var="${opt%%=*}" |
489 | local value="${opt#*=}" | |
c8973bf8 | 490 | echo "${var}=${value}" |
d56eeaab | 491 | export ${var}="${value}" |
f7707400 | 492 | done |
493 | } | |
494 | ||
495 | guessRunData() | |
496 | { | |
497 | #guess the period from the path, pick the rightmost one | |
498 | period="" | |
499 | runNumber="" | |
500 | year="" | |
501 | pass="" | |
502 | legoTrainRunNumber="" | |
503 | dataType="" | |
911c7ce3 | 504 | originalPass="" |
505 | originalPeriod="" | |
7d4afda6 | 506 | anchorYear="" |
f7707400 | 507 | |
17b0cdcd | 508 | shortRunNumber="" |
c8973bf8 | 509 | oldIFS=${IFS} |
f7707400 | 510 | local IFS="/" |
511 | declare -a path=( $1 ) | |
c8973bf8 | 512 | IFS="${oldIFS}" |
f7707400 | 513 | local dirDepth=$(( ${#path[*]}-1 )) |
514 | i=0 | |
515 | for ((x=${dirDepth};x>=0;x--)); do | |
516 | ||
517 | [[ $((x-1)) -ge 0 ]] && local fieldPrev=${path[$((x-1))]} | |
518 | local field=${path[${x}]} | |
519 | local fieldNext=${path[$((x+1))]} | |
520 | ||
521 | [[ ${field} =~ ^[0-9]*$ && ${fieldNext} =~ (.*\.zip$|.*\.root$) ]] && legoTrainRunNumber=${field} | |
522 | [[ -n ${legoTrainRunNumber} && -z ${pass} ]] && pass=${fieldPrev} | |
911c7ce3 | 523 | [[ ${field} =~ ^LHC[0-9][0-9][a-z].*$ ]] && period=${field%_*} && originalPeriod=${field} |
f7707400 | 524 | [[ ${field} =~ ^000[0-9][0-9][0-9][0-9][0-9][0-9]$ ]] && runNumber=${field#000} |
525 | [[ ${field} =~ ^[0-9][0-9][0-9][0-9][0-9][0-9]$ ]] && shortRunNumber=${field} | |
526 | [[ ${field} =~ ^20[0-9][0-9]$ ]] && year=${field} | |
527 | [[ ${field} =~ ^(^sim$|^data$) ]] && dataType=${field} | |
528 | (( i++ )) | |
529 | done | |
911c7ce3 | 530 | originalPass=${pass} |
17b0cdcd | 531 | [[ -n ${shortRunNumber} && "${legoTrainRunNumber}" =~ ${shortRunNumber} ]] && legoTrainRunNumber="" |
f7707400 | 532 | [[ -z ${legoTrainRunNumber} ]] && pass=${path[$((dirDepth-1))]} |
17b0cdcd | 533 | [[ "${dataType}" =~ ^sim$ ]] && pass="passMC" && runNumber=${shortRunNumber} && originalPass="" #for MC not from lego, the runnumber is identified as lego train number, thus needs to be nulled |
84ed81b2 | 534 | [[ -n ${legoTrainRunNumber} ]] && pass+="_lego${legoTrainRunNumber}" |
0c9bef99 | 535 | |
c8973bf8 | 536 | #modify the OCDB: set the year |
17b0cdcd | 537 | if [[ ${dataType} =~ sim ]]; then |
538 | anchorYear=$(for x in $mcProductionMap ; do [[ "${x}" =~ ${originalPeriod} ]] && echo ${x} && break; done) | |
539 | anchorYear=${anchorYear#*=} | |
7d4afda6 | 540 | ocdbStorage=$(setYear ${anchorYear} ${ocdbStorage}) |
541 | else | |
542 | ocdbStorage=$(setYear ${year} ${ocdbStorage}) | |
543 | fi | |
c8973bf8 | 544 | |
2a6472ef | 545 | #if [[ -z ${dataType} || -z ${year} || -z ${period} || -z ${runNumber}} || -z ${pass} ]]; |
c8973bf8 | 546 | if [[ -z ${runNumber}} ]] |
0c9bef99 | 547 | then |
548 | #error condition | |
549 | return 1 | |
550 | else | |
551 | #ALL OK | |
552 | return 0 | |
553 | fi | |
f7707400 | 554 | } |
555 | ||
556 | substituteDetectorName() | |
557 | { | |
558 | local det=$1 | |
559 | local dir=$2 | |
560 | [[ ${dir} =~ \%det ]] && det=${det,,} && echo ${dir/\%det/${det}} | |
561 | [[ ${dir} =~ \%DET ]] && det=${det} && echo ${dir/\%DET/${det}} | |
562 | } | |
563 | ||
7f49f812 | 564 | get_realpath() |
565 | { | |
566 | if [[ -f "$1" ]] | |
567 | then | |
568 | # file *must* exist | |
569 | if cd "$(echo "${1%/*}")" &>/dev/null | |
570 | then | |
571 | # file *may* not be local | |
572 | # exception is ./file.ext | |
573 | # try 'cd .; cd -;' *works!* | |
574 | local tmppwd="$PWD" | |
575 | cd - &>/dev/null | |
576 | else | |
577 | # file *must* be local | |
578 | local tmppwd="$PWD" | |
579 | fi | |
580 | else | |
581 | # file *cannot* exist | |
582 | return 1 # failure | |
583 | fi | |
584 | # reassemble realpath | |
585 | echo "$tmppwd"/"${1##*/}" | |
586 | return 0 # success | |
587 | } | |
588 | ||
c8973bf8 | 589 | setYear() |
590 | { | |
591 | #set the year | |
592 | # ${1} - year to be set | |
593 | # ${2} - where to set the year | |
594 | local year1=$(guessYear ${1}) | |
595 | local year2=$(guessYear ${2}) | |
596 | local path=${2} | |
597 | [[ ${year1} -ne ${year2} && -n ${year2} && -n ${year1} ]] && path=${2/\/${year2}\//\/${year1}\/} | |
598 | echo ${path} | |
599 | return 0 | |
600 | } | |
601 | ||
602 | guessYear() | |
603 | { | |
604 | #guess the year from the path, pick the rightmost one | |
605 | local IFS="/" | |
606 | declare -a pathArray=( ${1} ) | |
607 | local field | |
608 | local year | |
609 | for field in ${pathArray[@]}; do | |
610 | [[ ${field} =~ ^20[0-9][0-9]$ ]] && year=${field} | |
611 | done | |
612 | echo ${year} | |
613 | return 0 | |
614 | } | |
615 | ||
69b2d32e | 616 | hostInfo(){ |
617 | # | |
618 | # Hallo world - Print AliRoot/Root/Alien system info | |
619 | # | |
620 | ||
621 | # | |
622 | # HOST info | |
623 | # | |
624 | echo -------------------------------------- | |
625 | echo | |
626 | echo HOSTINFO | |
627 | echo | |
628 | echo HOSTINFO HOSTNAME" "$HOSTNAME | |
629 | echo HOSTINFO DATE" "`date` | |
630 | echo HOSTINFO gccpath" "`which gcc` | |
631 | echo HOSTINFO gcc version" "`gcc --version | grep gcc` | |
632 | echo -------------------------------------- | |
633 | ||
634 | # | |
635 | # ROOT info | |
636 | # | |
637 | echo -------------------------------------- | |
638 | echo | |
639 | echo ROOTINFO | |
640 | echo | |
641 | echo ROOTINFO ROOT" "`which root` | |
642 | echo ROOTINFO VERSION" "`root-config --version` | |
643 | echo | |
644 | echo -------------------------------------- | |
645 | ||
646 | ||
647 | # | |
648 | # ALIROOT info | |
649 | # | |
650 | echo -------------------------------------- | |
651 | echo | |
652 | echo ALIROOTINFO | |
653 | echo | |
654 | echo ALIROOTINFO ALIROOT" "`which aliroot` | |
655 | echo ALIROOTINFO VERSION" "`echo $ALICE_LEVEL` | |
656 | echo ALIROOTINFO TARGET" "`echo $ALICE_TARGET` | |
657 | echo | |
658 | echo -------------------------------------- | |
659 | ||
660 | # | |
661 | # Alien info | |
662 | # | |
663 | #echo -------------------------------------- | |
664 | #echo | |
665 | #echo ALIENINFO | |
666 | #for a in `alien --printenv`; do echo ALIENINFO $a; done | |
667 | #echo | |
668 | #echo -------------------------------------- | |
669 | ||
670 | # | |
671 | # Local Info | |
672 | # | |
673 | echo PWD `pwd` | |
674 | echo Dir | |
675 | ls -al | |
676 | echo | |
677 | echo | |
678 | echo | |
679 | } | |
680 | ||
c8973bf8 | 681 | main "$@" |