[u/mrichter/AliRoot.git] / STEER / AliESDpid.cxx

/**************************************************************************
 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
 *                                                                        *
 * Author: The ALICE Off-line Project.                                    *
 * Contributors are mentioned in the code where appropriate.              *
 *                                                                        *
 * Permission to use, copy, modify and distribute this software and its   *
 * documentation strictly for non-commercial purposes is hereby granted   *
 * without fee, provided that the above copyright notice appears in all   *
 * copies and that both the copyright notice and this permission notice   *
 * appear in the supporting documentation. The authors make no claims     *
 * about the suitability of this software for any purpose. It is          *
 * provided "as is" without express or implied warranty.                  *
 **************************************************************************/

/* $Id$ */

//-----------------------------------------------------------------
//           Implementation of the combined PID class
//           For the Event Summary Data Class
//           produced by the reconstruction process
//           and containing information on the particle identification
//      Origin: Iouri Belikov, CERN, Jouri.Belikov@cern.ch
//-----------------------------------------------------------------

#include "TArrayI.h"
#include "TArrayF.h"

#include "AliLog.h"
#include "AliPID.h"
#include "AliTOFHeader.h"
#include "AliESDpid.h"
#include "AliESDEvent.h"
#include "AliESDtrack.h"

ClassImp(AliESDpid)

Int_t AliESDpid::MakePID(AliESDEvent *event, Bool_t TPConly, Float_t timeZeroTOF) const {
  //
  //  Calculate probabilities for all detectors, except if TPConly==kTRUE
  //  and combine PID
  //  
  //   Option TPConly==kTRUE is used during reconstruction, 
  //  because ITS tracking uses TPC pid
  //  HMPID and TRD pid are done in detector reconstructors
  //

  /*
  Float_t timeZeroTOF = 0;
  if (subtractT0) 
    timeZeroTOF = event->GetT0();
  */
  Int_t nTrk=event->GetNumberOfTracks();
  for (Int_t iTrk=0; iTrk<nTrk; iTrk++) {  
    AliESDtrack *track=event->GetTrack(iTrk);
    MakeTPCPID(track);
    if (!TPConly) {
      MakeITSPID(track);
      MakeTOFPID(track, timeZeroTOF);
      //MakeHMPIDPID(track);
      //MakeTRDPID(track);
    }
    CombinePID(track);
  }
  return 0;
}
//_________________________________________________________________________
void AliESDpid::MakeTPCPID(AliESDtrack *track) const
{
  //
  //  TPC pid using bethe-bloch and gaussian response
  //
  if ((track->GetStatus()&AliESDtrack::kTPCin )==0)
    if ((track->GetStatus()&AliESDtrack::kTPCout)==0) return;

    Double_t mom = track->GetP();
    const AliExternalTrackParam *in=track->GetInnerParam();
    if (in) mom = in->GetP();

    Double_t p[AliPID::kSPECIES];
    Double_t dedx=track->GetTPCsignal(); 
    Bool_t mismatch=kTRUE, heavy=kTRUE;

    for (Int_t j=0; j<AliPID::kSPECIES; j++) {
      AliPID::EParticleType type=AliPID::EParticleType(j);
      Double_t bethe=fTPCResponse.GetExpectedSignal(mom,type); 
      Double_t sigma=fTPCResponse.GetExpectedSigma(mom,track->GetTPCsignalN(),type);
      if (TMath::Abs(dedx-bethe) > fRange*sigma) {
	p[j]=TMath::Exp(-0.5*fRange*fRange)/sigma;
      } else {
        p[j]=TMath::Exp(-0.5*(dedx-bethe)*(dedx-bethe)/(sigma*sigma))/sigma;
        mismatch=kFALSE;
      }

      // Check for particles heavier than (AliPID::kSPECIES - 1)
      if (dedx < (bethe + fRange*sigma)) heavy=kFALSE;

    }

    if (mismatch)
       for (Int_t j=0; j<AliPID::kSPECIES; j++) p[j]=1/AliPID::kSPECIES;

    track->SetTPCpid(p);

    if (heavy) track->ResetStatus(AliESDtrack::kTPCpid);

}
//_________________________________________________________________________
void AliESDpid::MakeITSPID(AliESDtrack *track) const
{
  //
  // ITS PID
  // Two options, depending on fITSPIDmethod:
  //  1) Truncated mean method
  //  2) Likelihood, using charges measured in all 4 layers and 
  //     Landau+gaus response functions
  //

  if ((track->GetStatus()&AliESDtrack::kITSin)==0 &&
      (track->GetStatus()&AliESDtrack::kITSout)==0) return;

  Double_t mom=track->GetP();  
  if (fITSPIDmethod == kITSTruncMean) {
    Double_t dedx=track->GetITSsignal();
    Bool_t isSA=kTRUE;
    Double_t momITS=mom;
    ULong_t trStatus=track->GetStatus();
    if(trStatus&AliESDtrack::kTPCin) isSA=kFALSE;
    UChar_t clumap=track->GetITSClusterMap();
    Int_t nPointsForPid=0;
    for(Int_t i=2; i<6; i++){
      if(clumap&(1<<i)) ++nPointsForPid;
    }

    if(nPointsForPid<3) { // track not to be used for combined PID purposes
      track->ResetStatus(AliESDtrack::kITSpid);
      return;
    }

    Double_t p[10];

    Bool_t mismatch=kTRUE, heavy=kTRUE;
    for (Int_t j=0; j<AliPID::kSPECIES; j++) {
      Double_t mass=AliPID::ParticleMass(j);//GeV/c^2
      Double_t bethe=fITSResponse.Bethe(momITS,mass);
      Double_t sigma=fITSResponse.GetResolution(bethe,nPointsForPid,isSA);
      if (TMath::Abs(dedx-bethe) > fRange*sigma) {
	p[j]=TMath::Exp(-0.5*fRange*fRange)/sigma;
      } else {
        p[j]=TMath::Exp(-0.5*(dedx-bethe)*(dedx-bethe)/(sigma*sigma))/sigma;
        mismatch=kFALSE;
      }

      // Check for particles heavier than (AliPID::kSPECIES - 1)
      if (dedx < (bethe + fRange*sigma)) heavy=kFALSE;

    }

    if (mismatch)
       for (Int_t j=0; j<AliPID::kSPECIES; j++) p[j]=1./AliPID::kSPECIES;

    track->SetITSpid(p);

    if (heavy) track->ResetStatus(AliESDtrack::kITSpid);
  }
  else {  // Likelihood method
    Double_t condprobfun[AliPID::kSPECIES];
    Double_t qclu[4];
    track->GetITSdEdxSamples(qclu);
    fITSResponse.GetITSProbabilities(mom,qclu,condprobfun);
    track->SetITSpid(condprobfun);
  }

}
//_________________________________________________________________________
void AliESDpid::MakeTOFPID(AliESDtrack *track, Float_t /*timeZeroTOF*/) const
{
  //
  //   TOF PID using gaussian response
  //

  if ((track->GetStatus()&AliESDtrack::kTOFout)==0) return;
  if ((track->GetStatus()&AliESDtrack::kTIME)==0) return;

  Int_t ibin = fTOFResponse.GetMomBin(track->GetP());
  Float_t timezero = fTOFResponse.GetT0bin(ibin);

  Double_t time[AliPID::kSPECIESN];
  track->GetIntegratedTimes(time);

  Double_t sigma[AliPID::kSPECIES];
  for (Int_t iPart = 0; iPart < AliPID::kSPECIES; iPart++) {
    sigma[iPart] = fTOFResponse.GetExpectedSigma(track->GetP(),time[iPart],AliPID::ParticleMass(iPart));
  }

  AliDebugGeneral("AliESDpid::MakeTOFPID",2,
	   Form("Expected TOF signals [ps]: %f %f %f %f %f",
		  time[AliPID::kElectron],
		  time[AliPID::kMuon],
		  time[AliPID::kPion],
		  time[AliPID::kKaon],
		  time[AliPID::kProton]));

  AliDebugGeneral("AliESDpid::MakeTOFPID",2,
	   Form("Expected TOF std deviations [ps]: %f %f %f %f %f",
		  sigma[AliPID::kElectron],
		  sigma[AliPID::kMuon],
		  sigma[AliPID::kPion],
		  sigma[AliPID::kKaon],
		  sigma[AliPID::kProton]
		  ));

  Double_t tof = track->GetTOFsignal() - timezero;

  Double_t p[AliPID::kSPECIES];
  Bool_t mismatch = kTRUE, heavy = kTRUE;
  for (Int_t j=0; j<AliPID::kSPECIES; j++) {
    Double_t sig = sigma[j];
    if (TMath::Abs(tof-time[j]) > (fRange+2)*sig) {
	p[j] = TMath::Exp(-0.5*(fRange+2)*(fRange+2))/sig;
    } else
      p[j] = TMath::Exp(-0.5*(tof-time[j])*(tof-time[j])/(sig*sig))/sig;

    // Check the mismatching
    Double_t mass = AliPID::ParticleMass(j);
    Double_t pm = fTOFResponse.GetMismatchProbability(track->GetP(),mass);
    if (p[j]>pm) mismatch = kFALSE;

    // Check for particles heavier than (AliPID::kSPECIES - 1)
    if (tof < (time[j] + fRange*sig)) heavy=kFALSE;

  }

  if (mismatch)
    for (Int_t j=0; j<AliPID::kSPECIES; j++) p[j]=1/AliPID::kSPECIES;

  track->SetTOFpid(p);

  if (heavy) track->ResetStatus(AliESDtrack::kTOFpid);    
  if (!CheckTOFMatching(track)) track->SetStatus(AliESDtrack::kTOFmismatch);
  
}
//_________________________________________________________________________
void AliESDpid::MakeTRDPID(AliESDtrack *track) const
{
  //
  // Method to recalculate the TRD PID probabilities
  //
  if((track->GetStatus()&AliESDtrack::kTRDout)==0) return;
  Double_t prob[AliPID::kSPECIES]; Float_t mom[6];
  Double_t dedx[48];  // Allocate space for the maximum number of TRD slices
  for(Int_t ilayer = 0; ilayer < 6; ilayer++){
    mom[ilayer] = track->GetTRDmomentum(ilayer);
    for(Int_t islice = 0; islice < track->GetNumberOfTRDslices(); islice++){
      dedx[ilayer*track->GetNumberOfTRDslices()+islice] = track->GetTRDslice(ilayer, islice);
    }
  }
  fTRDResponse.GetResponse(track->GetNumberOfTRDslices(), dedx, mom, prob);
  track->SetTRDpid(prob);
}
//_________________________________________________________________________
void AliESDpid::CombinePID(AliESDtrack *track) const
{
  //
  // Combine the information of various detectors
  // to determine the Particle Identification
  //
  Int_t ns=AliPID::kSPECIES;
  Double_t p[10]={1.,1.,1.,1.,1.,1.,1.,1.,1.,1.};

  if (track->IsOn(AliESDtrack::kITSpid)) {
    Double_t d[10];
    track->GetITSpid(d);
    for (Int_t j=0; j<ns; j++) p[j]*=d[j];
  }

  if (track->IsOn(AliESDtrack::kTPCpid)) {
    Double_t d[10];
    track->GetTPCpid(d);
    for (Int_t j=0; j<ns; j++) p[j]*=d[j];
  }

  if (track->IsOn(AliESDtrack::kTRDpid)) {
    Double_t d[10];
    track->GetTRDpid(d);
    for (Int_t j=0; j<ns; j++) p[j]*=d[j];
  }

  if (track->IsOn(AliESDtrack::kTOFpid)) {
    Double_t d[10];
    track->GetTOFpid(d);
    for (Int_t j=0; j<ns; j++) p[j]*=d[j];
  }

  if (track->IsOn(AliESDtrack::kHMPIDpid)) {
    Double_t d[10];
    track->GetHMPIDpid(d);
    for (Int_t j=0; j<ns; j++) p[j]*=d[j];
  }

  track->SetESDpid(p);
}
//_________________________________________________________________________
Bool_t AliESDpid::CheckTOFMatching(AliESDtrack *track) const{
    Bool_t status = kFALSE;
    
    Double_t exptimes[5];
    track->GetIntegratedTimes(exptimes);
    
    Float_t p = track->P();
    
    Float_t dedx = track->GetTPCsignal();
    Float_t time = track->GetTOFsignal() - fTOFResponse.GetStartTime(p);
    
    Double_t ptpc[3];
    track->GetInnerPxPyPz(ptpc);
    Float_t momtpc=TMath::Sqrt(ptpc[0]*ptpc[0] + ptpc[1]*ptpc[1] + ptpc[2]*ptpc[2]);
    
    for(Int_t i=0;i < 5;i++){
	AliPID::EParticleType type=AliPID::EParticleType(i);
	
	Float_t resolutionTOF = fTOFResponse.GetExpectedSigma(p, exptimes[i], AliPID::ParticleMass(i));
	if(TMath::Abs(exptimes[i] - time) < fRange * resolutionTOF){
	    Float_t dedxExp = fTPCResponse.GetExpectedSignal(momtpc,type);
	    Float_t resolutionTPC = fTPCResponse.GetExpectedSigma(momtpc,track->GetTPCsignalN(),type);
	    
	    if(TMath::Abs(dedx - dedxExp) < fRangeTOFMismatch * resolutionTPC){
		status = kTRUE;
	    }
	}
    }
    
    // for nuclei
    Float_t resolutionTOFpr = fTOFResponse.GetExpectedSigma(p, exptimes[4], AliPID::ParticleMass(4));
    if(!status && (exptimes[4] + fRange*resolutionTOFpr < time)) status = kTRUE;
    
    
    return status;
}
//_________________________________________________________________________
void AliESDpid::SetTOFResponse(AliESDEvent *event,EStartTimeType_t option){
  //
  // Set TOF response function
  // Input option for event_time used
  //

    Float_t t0spread = 0.; //event->GetEventTimeSpread();
    if(t0spread < 10) t0spread = 80;

    // T0 from TOF algorithm

    Bool_t flagT0TOF=kFALSE;
    Bool_t flagT0T0=kFALSE;
    Float_t *startTime = new Float_t[fTOFResponse.GetNmomBins()];
    Float_t *startTimeRes = new Float_t[fTOFResponse.GetNmomBins()];

    // T0-TOF arrays
    Float_t *estimatedT0event = new Float_t[fTOFResponse.GetNmomBins()];
    Float_t *estimatedT0resolution = new Float_t[fTOFResponse.GetNmomBins()];
    for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
      estimatedT0event[i]=0.0;
      estimatedT0resolution[i]=0.0;
    }

    Float_t resT0A=75,resT0C=65,resT0AC=55;
    if(event->GetT0TOF()){ // check if T0 detector information is available
	flagT0T0=kTRUE;
    }


    AliTOFHeader *tofHeader =(AliTOFHeader*)event->GetTOFHeader();

    if(tofHeader){ // read global info and T0-TOF info from ESD
      fTOFResponse.SetTimeResolution(tofHeader->GetTOFResolution());
      t0spread = tofHeader->GetT0spread(); // read t0 sprad
      if(t0spread < 10) t0spread = 80;

      flagT0TOF=kTRUE;
      for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){ // read T0-TOF default value
	startTime[i]=tofHeader->GetDefaultEventTimeVal();
	startTimeRes[i]=tofHeader->GetDefaultEventTimeRes();
      }

      TArrayI *ibin=tofHeader->GetNvalues();
      TArrayF *t0Bin=tofHeader->GetEventTimeValues();
      TArrayF *t0ResBin=tofHeader->GetEventTimeRes();
      for(Int_t j=0;j < tofHeader->GetNbins();j++){ // fill T0-TOF in p-bins
	Int_t icurrent = (Int_t)ibin->GetAt(j);
	startTime[icurrent]=t0Bin->GetAt(j);
	startTimeRes[icurrent]=t0ResBin->GetAt(j);
      }
    }

    // for cut of 3 sigma on t0 spread
    Float_t t0cut = 3 * t0spread;
    if(t0cut < 500) t0cut = 500;

    if(option == kFILL_T0){ // T0-FILL is used
	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	  estimatedT0event[i]=0.0;
	  estimatedT0resolution[i]=t0spread;
	}
	fTOFResponse.SetT0event(estimatedT0event);
	fTOFResponse.SetT0resolution(estimatedT0resolution);
    }

    if(option == kTOF_T0){ // T0-TOF is used when available (T0-FILL otherwise) from ESD
	if(flagT0TOF){
	    fTOFResponse.SetT0event(startTime);
	    fTOFResponse.SetT0resolution(startTimeRes);
	}
	else{
	    for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	      estimatedT0event[i]=0.0;
	      estimatedT0resolution[i]=t0spread;
	    }
	    fTOFResponse.SetT0event(estimatedT0event);
	    fTOFResponse.SetT0resolution(estimatedT0resolution);
	}
    }
    else if(option == kBest_T0){ // T0-T0 is used when available (T0-FILL otherwise) from ESD
	Float_t t0AC=-10000;
	Float_t t0A=-10000;
	Float_t t0C=-10000;
	if(flagT0T0){
	    t0AC= event->GetT0TOF()[0];
	    t0A= event->GetT0TOF()[1];
	    t0C= event->GetT0TOF()[2];
	}

	Float_t t0t0Best = 0;
	Float_t t0t0BestRes = 9999;
	if(TMath::Abs(t0A) < t0cut && TMath::Abs(t0C) < t0cut && TMath::Abs(t0C-t0A) < 500){
	    t0t0Best = t0AC;
	    t0t0BestRes = resT0AC;
	}
	else if(TMath::Abs(t0C) < t0cut){
	    t0t0Best = t0C;
	    t0t0BestRes = resT0C;
	}
	else if(TMath::Abs(t0A) < t0cut){
	    t0t0Best = t0A;
	    t0t0BestRes = resT0A;
	}

	if(flagT0TOF){ // if T0-TOF info is available
	    for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
		if(t0t0BestRes < 999){
		  if(startTimeRes[i] < t0spread){
		    Double_t wtot = 1./startTimeRes[i]/startTimeRes[i] + 1./t0t0BestRes/t0t0BestRes;
		    Double_t t0best = startTime[i]/startTimeRes[i]/startTimeRes[i] + t0t0Best/t0t0BestRes/t0t0BestRes;
		    estimatedT0event[i]=t0best / wtot;
		    estimatedT0resolution[i]=1./TMath::Sqrt(wtot);
		  }
		  else {
		    estimatedT0event[i]=t0t0Best;
		    estimatedT0resolution[i]=t0t0BestRes;
		  }
		}
		else{
		  estimatedT0event[i]=startTime[i];
		  estimatedT0resolution[i]=startTimeRes[i];
		}
	    }
	    fTOFResponse.SetT0event(estimatedT0event);
	    fTOFResponse.SetT0resolution(estimatedT0resolution);
	}
	else{ // if no T0-TOF info is available
	    for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
		if(t0t0BestRes < 999){
		  estimatedT0event[i]=t0t0Best;
		  estimatedT0resolution[i]=t0t0BestRes;
		}
		else{
		  estimatedT0event[i]=0.0;
		  estimatedT0resolution[i]=t0spread;
		}
	    }
	    fTOFResponse.SetT0event(estimatedT0event);
	    fTOFResponse.SetT0resolution(estimatedT0resolution);
	}
    }

    else if(option == kT0_T0){ // the best of what available (T0-FILL otherwise) from ESD
	Float_t t0AC=-10000;
	Float_t t0A=-10000;
	Float_t t0C=-10000;
	if(flagT0T0){
	    t0AC= event->GetT0TOF()[0];
	    t0A= event->GetT0TOF()[1];
	    t0C= event->GetT0TOF()[2];
	}

	if(TMath::Abs(t0A) < t0cut && TMath::Abs(t0C) < t0cut && TMath::Abs(t0C-t0A) < 500){
	    for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	      estimatedT0event[i]=t0AC;
	      estimatedT0resolution[i]=resT0AC;
	    }
	}
	else if(TMath::Abs(t0C) < t0cut){
	    for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	      estimatedT0event[i]=t0C;
	      estimatedT0resolution[i]=resT0C;
	    }
	}
	else if(TMath::Abs(t0A) < t0cut){
	    for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	      estimatedT0event[i]=t0A;
	      estimatedT0resolution[i]=resT0A;
	    }
	}
	else{
	    for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	      estimatedT0event[i]=0.0;
	      estimatedT0resolution[i]=t0spread;
	    }
	}
	fTOFResponse.SetT0event(estimatedT0event);
	fTOFResponse.SetT0resolution(estimatedT0resolution);
    }
    delete [] startTime;
    delete [] startTimeRes;
    delete [] estimatedT0event;
    delete [] estimatedT0resolution;
}
Commit	Line	Data
8c6a71ab	1	/**************************************************************************
	2	* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
	3	* *
	4	* Author: The ALICE Off-line Project. *
	5	* Contributors are mentioned in the code where appropriate. *
	6	* *
	7	* Permission to use, copy, modify and distribute this software and its *
	8	* documentation strictly for non-commercial purposes is hereby granted *
	9	* without fee, provided that the above copyright notice appears in all *
	10	* copies and that both the copyright notice and this permission notice *
	11	* appear in the supporting documentation. The authors make no claims *
	12	* about the suitability of this software for any purpose. It is *
	13	* provided "as is" without express or implied warranty. *
	14	**************************************************************************/
	15
4f679a16	16	/* $Id$ */
4f679a16	17
8c6a71ab	18	//-----------------------------------------------------------------
8c6a71ab	19	// Implementation of the combined PID class
4f679a16	20	// For the Event Summary Data Class
	21	// produced by the reconstruction process
	22	// and containing information on the particle identification
8c6a71ab	23	// Origin: Iouri Belikov, CERN, Jouri.Belikov@cern.ch
	24	//-----------------------------------------------------------------
	25
f858b00e	26	#include "TArrayI.h"
	27	#include "TArrayF.h"
	28
10d100d4	29	#include "AliLog.h"
10d100d4	30	#include "AliPID.h"
f858b00e	31	#include "AliTOFHeader.h"
8c6a71ab	32	#include "AliESDpid.h"
af885e0f	33	#include "AliESDEvent.h"
8c6a71ab	34	#include "AliESDtrack.h"
	35
	36	ClassImp(AliESDpid)
	37
f858b00e	38	Int_t AliESDpid::MakePID(AliESDEvent *event, Bool_t TPConly, Float_t timeZeroTOF) const {
10d100d4	39	//
	40	// Calculate probabilities for all detectors, except if TPConly==kTRUE
	41	// and combine PID
	42	//
	43	// Option TPConly==kTRUE is used during reconstruction,
	44	// because ITS tracking uses TPC pid
	45	// HMPID and TRD pid are done in detector reconstructors
	46	//
	47
	48	/*
f858b00e	49	Float_t timeZeroTOF = 0;
10d100d4	50	if (subtractT0)
f858b00e	51	timeZeroTOF = event->GetT0();
10d100d4	52	*/
	53	Int_t nTrk=event->GetNumberOfTracks();
	54	for (Int_t iTrk=0; iTrk<nTrk; iTrk++) {
	55	AliESDtrack *track=event->GetTrack(iTrk);
	56	MakeTPCPID(track);
	57	if (!TPConly) {
	58	MakeITSPID(track);
f858b00e	59	MakeTOFPID(track, timeZeroTOF);
10d100d4	60	//MakeHMPIDPID(track);
ce5d6908	61	//MakeTRDPID(track);
10d100d4	62	}
	63	CombinePID(track);
	64	}
	65	return 0;
	66	}
8c6a71ab	67	//_________________________________________________________________________
10d100d4	68	void AliESDpid::MakeTPCPID(AliESDtrack *track) const
8c6a71ab	69	{
4f679a16	70	//
10d100d4	71	// TPC pid using bethe-bloch and gaussian response
4f679a16	72	//
10d100d4	73	if ((track->GetStatus()&AliESDtrack::kTPCin )==0)
10d100d4	74	if ((track->GetStatus()&AliESDtrack::kTPCout)==0) return;
8c6a71ab	75
10d100d4	76	Double_t mom = track->GetP();
	77	const AliExternalTrackParam *in=track->GetInnerParam();
	78	if (in) mom = in->GetP();
8c6a71ab	79
10d100d4	80	Double_t p[AliPID::kSPECIES];
	81	Double_t dedx=track->GetTPCsignal();
	82	Bool_t mismatch=kTRUE, heavy=kTRUE;
8c6a71ab	83
10d100d4	84	for (Int_t j=0; j<AliPID::kSPECIES; j++) {
	85	AliPID::EParticleType type=AliPID::EParticleType(j);
	86	Double_t bethe=fTPCResponse.GetExpectedSignal(mom,type);
	87	Double_t sigma=fTPCResponse.GetExpectedSigma(mom,track->GetTPCsignalN(),type);
	88	if (TMath::Abs(dedx-bethe) > fRange*sigma) {
	89	p[j]=TMath::Exp(-0.5fRangefRange)/sigma;
	90	} else {
	91	p[j]=TMath::Exp(-0.5(dedx-bethe)(dedx-bethe)/(sigma*sigma))/sigma;
	92	mismatch=kFALSE;
	93	}
8c6a71ab	94
10d100d4	95	// Check for particles heavier than (AliPID::kSPECIES - 1)
10d100d4	96	if (dedx < (bethe + fRange*sigma)) heavy=kFALSE;
c630aafd	97
4a78b8c5	98	}
4a78b8c5	99
10d100d4	100	if (mismatch)
	101	for (Int_t j=0; j<AliPID::kSPECIES; j++) p[j]=1/AliPID::kSPECIES;
	102
	103	track->SetTPCpid(p);
	104
	105	if (heavy) track->ResetStatus(AliESDtrack::kTPCpid);
	106
	107	}
	108	//_________________________________________________________________________
	109	void AliESDpid::MakeITSPID(AliESDtrack *track) const
	110	{
	111	//
	112	// ITS PID
	113	// Two options, depending on fITSPIDmethod:
	114	// 1) Truncated mean method
	115	// 2) Likelihood, using charges measured in all 4 layers and
	116	// Landau+gaus response functions
	117	//
	118
	119	if ((track->GetStatus()&AliESDtrack::kITSin)==0 &&
	120	(track->GetStatus()&AliESDtrack::kITSout)==0) return;
	121
	122	Double_t mom=track->GetP();
	123	if (fITSPIDmethod == kITSTruncMean) {
	124	Double_t dedx=track->GetITSsignal();
15e979c9	125	Bool_t isSA=kTRUE;
	126	Double_t momITS=mom;
	127	ULong_t trStatus=track->GetStatus();
99daa709	128	if(trStatus&AliESDtrack::kTPCin) isSA=kFALSE;
15e979c9	129	UChar_t clumap=track->GetITSClusterMap();
	130	Int_t nPointsForPid=0;
	131	for(Int_t i=2; i<6; i++){
	132	if(clumap&(1<<i)) ++nPointsForPid;
	133	}
	134
	135	if(nPointsForPid<3) { // track not to be used for combined PID purposes
	136	track->ResetStatus(AliESDtrack::kITSpid);
	137	return;
	138	}
	139
10d100d4	140	Double_t p[10];
15e979c9	141
10d100d4	142	Bool_t mismatch=kTRUE, heavy=kTRUE;
	143	for (Int_t j=0; j<AliPID::kSPECIES; j++) {
	144	Double_t mass=AliPID::ParticleMass(j);//GeV/c^2
15e979c9	145	Double_t bethe=fITSResponse.Bethe(momITS,mass);
15e979c9	146	Double_t sigma=fITSResponse.GetResolution(bethe,nPointsForPid,isSA);
10d100d4	147	if (TMath::Abs(dedx-bethe) > fRange*sigma) {
	148	p[j]=TMath::Exp(-0.5fRangefRange)/sigma;
	149	} else {
	150	p[j]=TMath::Exp(-0.5(dedx-bethe)(dedx-bethe)/(sigma*sigma))/sigma;
	151	mismatch=kFALSE;
	152	}
	153
	154	// Check for particles heavier than (AliPID::kSPECIES - 1)
	155	if (dedx < (bethe + fRange*sigma)) heavy=kFALSE;
	156
4a78b8c5	157	}
c630aafd	158
10d100d4	159	if (mismatch)
	160	for (Int_t j=0; j<AliPID::kSPECIES; j++) p[j]=1./AliPID::kSPECIES;
	161
	162	track->SetITSpid(p);
	163
	164	if (heavy) track->ResetStatus(AliESDtrack::kITSpid);
	165	}
	166	else { // Likelihood method
	167	Double_t condprobfun[AliPID::kSPECIES];
	168	Double_t qclu[4];
	169	track->GetITSdEdxSamples(qclu);
	170	fITSResponse.GetITSProbabilities(mom,qclu,condprobfun);
	171	track->SetITSpid(condprobfun);
8c6a71ab	172	}
7a8614f3	173
10d100d4	174	}
10d100d4	175	//_________________________________________________________________________
f858b00e	176	void AliESDpid::MakeTOFPID(AliESDtrack track, Float_t /timeZeroTOF*/) const
10d100d4	177	{
	178	//
	179	// TOF PID using gaussian response
	180	//
f858b00e	181
10d100d4	182	if ((track->GetStatus()&AliESDtrack::kTOFout)==0) return;
	183	if ((track->GetStatus()&AliESDtrack::kTIME)==0) return;
	184
f858b00e	185	Int_t ibin = fTOFResponse.GetMomBin(track->GetP());
	186	Float_t timezero = fTOFResponse.GetT0bin(ibin);
	187
10d100d4	188	Double_t time[AliPID::kSPECIESN];
	189	track->GetIntegratedTimes(time);
	190
	191	Double_t sigma[AliPID::kSPECIES];
	192	for (Int_t iPart = 0; iPart < AliPID::kSPECIES; iPart++) {
	193	sigma[iPart] = fTOFResponse.GetExpectedSigma(track->GetP(),time[iPart],AliPID::ParticleMass(iPart));
	194	}
	195
	196	AliDebugGeneral("AliESDpid::MakeTOFPID",2,
	197	Form("Expected TOF signals [ps]: %f %f %f %f %f",
	198	time[AliPID::kElectron],
	199	time[AliPID::kMuon],
	200	time[AliPID::kPion],
	201	time[AliPID::kKaon],
	202	time[AliPID::kProton]));
	203
	204	AliDebugGeneral("AliESDpid::MakeTOFPID",2,
	205	Form("Expected TOF std deviations [ps]: %f %f %f %f %f",
	206	sigma[AliPID::kElectron],
	207	sigma[AliPID::kMuon],
	208	sigma[AliPID::kPion],
	209	sigma[AliPID::kKaon],
	210	sigma[AliPID::kProton]
	211	));
	212
f858b00e	213	Double_t tof = track->GetTOFsignal() - timezero;
10d100d4	214
	215	Double_t p[AliPID::kSPECIES];
	216	Bool_t mismatch = kTRUE, heavy = kTRUE;
	217	for (Int_t j=0; j<AliPID::kSPECIES; j++) {
	218	Double_t sig = sigma[j];
f858b00e	219	if (TMath::Abs(tof-time[j]) > (fRange+2)*sig) {
f858b00e	220	p[j] = TMath::Exp(-0.5(fRange+2)(fRange+2))/sig;
10d100d4	221	} else
	222	p[j] = TMath::Exp(-0.5(tof-time[j])(tof-time[j])/(sig*sig))/sig;
	223
	224	// Check the mismatching
	225	Double_t mass = AliPID::ParticleMass(j);
	226	Double_t pm = fTOFResponse.GetMismatchProbability(track->GetP(),mass);
	227	if (p[j]>pm) mismatch = kFALSE;
	228
	229	// Check for particles heavier than (AliPID::kSPECIES - 1)
	230	if (tof < (time[j] + fRange*sig)) heavy=kFALSE;
	231
	232	}
	233
	234	if (mismatch)
	235	for (Int_t j=0; j<AliPID::kSPECIES; j++) p[j]=1/AliPID::kSPECIES;
	236
	237	track->SetTOFpid(p);
	238
	239	if (heavy) track->ResetStatus(AliESDtrack::kTOFpid);
7170298c	240	if (!CheckTOFMatching(track)) track->SetStatus(AliESDtrack::kTOFmismatch);
f858b00e	241
10d100d4	242	}
10d100d4	243	//_________________________________________________________________________
b439f460	244	void AliESDpid::MakeTRDPID(AliESDtrack *track) const
	245	{
	246	//
	247	// Method to recalculate the TRD PID probabilities
	248	//
	249	if((track->GetStatus()&AliESDtrack::kTRDout)==0) return;
	250	Double_t prob[AliPID::kSPECIES]; Float_t mom[6];
	251	Double_t dedx[48]; // Allocate space for the maximum number of TRD slices
	252	for(Int_t ilayer = 0; ilayer < 6; ilayer++){
	253	mom[ilayer] = track->GetTRDmomentum(ilayer);
	254	for(Int_t islice = 0; islice < track->GetNumberOfTRDslices(); islice++){
	255	dedx[ilayer*track->GetNumberOfTRDslices()+islice] = track->GetTRDslice(ilayer, islice);
	256	}
	257	}
	258	fTRDResponse.GetResponse(track->GetNumberOfTRDslices(), dedx, mom, prob);
	259	track->SetTRDpid(prob);
	260	}
	261	//_________________________________________________________________________
10d100d4	262	void AliESDpid::CombinePID(AliESDtrack *track) const
	263	{
	264	//
	265	// Combine the information of various detectors
	266	// to determine the Particle Identification
	267	//
	268	Int_t ns=AliPID::kSPECIES;
	269	Double_t p[10]={1.,1.,1.,1.,1.,1.,1.,1.,1.,1.};
	270
	271	if (track->IsOn(AliESDtrack::kITSpid)) {
	272	Double_t d[10];
	273	track->GetITSpid(d);
	274	for (Int_t j=0; j<ns; j++) p[j]*=d[j];
	275	}
	276
	277	if (track->IsOn(AliESDtrack::kTPCpid)) {
	278	Double_t d[10];
	279	track->GetTPCpid(d);
	280	for (Int_t j=0; j<ns; j++) p[j]*=d[j];
	281	}
	282
	283	if (track->IsOn(AliESDtrack::kTRDpid)) {
	284	Double_t d[10];
	285	track->GetTRDpid(d);
	286	for (Int_t j=0; j<ns; j++) p[j]*=d[j];
	287	}
	288
	289	if (track->IsOn(AliESDtrack::kTOFpid)) {
	290	Double_t d[10];
	291	track->GetTOFpid(d);
	292	for (Int_t j=0; j<ns; j++) p[j]*=d[j];
	293	}
	294
	295	if (track->IsOn(AliESDtrack::kHMPIDpid)) {
	296	Double_t d[10];
	297	track->GetHMPIDpid(d);
	298	for (Int_t j=0; j<ns; j++) p[j]*=d[j];
	299	}
	300
	301	track->SetESDpid(p);
8c6a71ab	302	}
f858b00e	303	//_________________________________________________________________________
	304	Bool_t AliESDpid::CheckTOFMatching(AliESDtrack *track) const{
	305	Bool_t status = kFALSE;
	306
	307	Double_t exptimes[5];
	308	track->GetIntegratedTimes(exptimes);
	309
f858b00e	310	Float_t p = track->P();
f858b00e	311
7170298c	312	Float_t dedx = track->GetTPCsignal();
	313	Float_t time = track->GetTOFsignal() - fTOFResponse.GetStartTime(p);
	314
f858b00e	315	Double_t ptpc[3];
	316	track->GetInnerPxPyPz(ptpc);
	317	Float_t momtpc=TMath::Sqrt(ptpc[0]ptpc[0] + ptpc[1]ptpc[1] + ptpc[2]*ptpc[2]);
	318
	319	for(Int_t i=0;i < 5;i++){
	320	AliPID::EParticleType type=AliPID::EParticleType(i);
	321
	322	Float_t resolutionTOF = fTOFResponse.GetExpectedSigma(p, exptimes[i], AliPID::ParticleMass(i));
	323	if(TMath::Abs(exptimes[i] - time) < fRange * resolutionTOF){
	324	Float_t dedxExp = fTPCResponse.GetExpectedSignal(momtpc,type);
	325	Float_t resolutionTPC = fTPCResponse.GetExpectedSigma(momtpc,track->GetTPCsignalN(),type);
	326
7170298c	327	if(TMath::Abs(dedx - dedxExp) < fRangeTOFMismatch * resolutionTPC){
f858b00e	328	status = kTRUE;
	329	}
	330	}
	331	}
	332
	333	// for nuclei
c1252298	334	Float_t resolutionTOFpr = fTOFResponse.GetExpectedSigma(p, exptimes[4], AliPID::ParticleMass(4));
c1252298	335	if(!status && (exptimes[4] + fRange*resolutionTOFpr < time)) status = kTRUE;
f858b00e	336
	337
	338	return status;
	339	}
	340	//_________________________________________________________________________
	341	void AliESDpid::SetTOFResponse(AliESDEvent *event,EStartTimeType_t option){
	342	//
	343	// Set TOF response function
	344	// Input option for event_time used
	345	//
	346
	347	Float_t t0spread = 0.; //event->GetEventTimeSpread();
	348	if(t0spread < 10) t0spread = 80;
	349
	350	// T0 from TOF algorithm
f858b00e	351
	352	Bool_t flagT0TOF=kFALSE;
	353	Bool_t flagT0T0=kFALSE;
2f43a5ff	354	Float_t *startTime = new Float_t[fTOFResponse.GetNmomBins()];
2f43a5ff	355	Float_t *startTimeRes = new Float_t[fTOFResponse.GetNmomBins()];
f858b00e	356
7eb68cb5	357	// T0-TOF arrays
2f43a5ff	358	Float_t *estimatedT0event = new Float_t[fTOFResponse.GetNmomBins()];
2f43a5ff	359	Float_t *estimatedT0resolution = new Float_t[fTOFResponse.GetNmomBins()];
f858b00e	360	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	361	estimatedT0event[i]=0.0;
	362	estimatedT0resolution[i]=0.0;
	363	}
	364
7eb68cb5	365	Float_t resT0A=75,resT0C=65,resT0AC=55;
7eb68cb5	366	if(event->GetT0TOF()){ // check if T0 detector information is available
f858b00e	367	flagT0T0=kTRUE;
	368	}
	369
	370
	371	AliTOFHeader tofHeader =(AliTOFHeader)event->GetTOFHeader();
	372
7eb68cb5	373	if(tofHeader){ // read global info and T0-TOF info from ESD
4d197ca4	374	fTOFResponse.SetTimeResolution(tofHeader->GetTOFResolution());
7eb68cb5	375	t0spread = tofHeader->GetT0spread(); // read t0 sprad
4d197ca4	376	if(t0spread < 10) t0spread = 80;
f858b00e	377
f858b00e	378	flagT0TOF=kTRUE;
7eb68cb5	379	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){ // read T0-TOF default value
	380	startTime[i]=tofHeader->GetDefaultEventTimeVal();
	381	startTimeRes[i]=tofHeader->GetDefaultEventTimeRes();
f858b00e	382	}
	383
	384	TArrayI *ibin=tofHeader->GetNvalues();
	385	TArrayF *t0Bin=tofHeader->GetEventTimeValues();
	386	TArrayF *t0ResBin=tofHeader->GetEventTimeRes();
7eb68cb5	387	for(Int_t j=0;j < tofHeader->GetNbins();j++){ // fill T0-TOF in p-bins
f858b00e	388	Int_t icurrent = (Int_t)ibin->GetAt(j);
7eb68cb5	389	startTime[icurrent]=t0Bin->GetAt(j);
7eb68cb5	390	startTimeRes[icurrent]=t0ResBin->GetAt(j);
f858b00e	391	}
	392	}
	393
7eb68cb5	394	// for cut of 3 sigma on t0 spread
	395	Float_t t0cut = 3 * t0spread;
	396	if(t0cut < 500) t0cut = 500;
	397
f858b00e	398	if(option == kFILL_T0){ // T0-FILL is used
	399	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	400	estimatedT0event[i]=0.0;
	401	estimatedT0resolution[i]=t0spread;
f858b00e	402	}
	403	fTOFResponse.SetT0event(estimatedT0event);
	404	fTOFResponse.SetT0resolution(estimatedT0resolution);
	405	}
7eb68cb5	406
f858b00e	407	if(option == kTOF_T0){ // T0-TOF is used when available (T0-FILL otherwise) from ESD
f858b00e	408	if(flagT0TOF){
f858b00e	409	fTOFResponse.SetT0event(startTime);
	410	fTOFResponse.SetT0resolution(startTimeRes);
	411	}
	412	else{
	413	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	414	estimatedT0event[i]=0.0;
	415	estimatedT0resolution[i]=t0spread;
f858b00e	416	}
	417	fTOFResponse.SetT0event(estimatedT0event);
	418	fTOFResponse.SetT0resolution(estimatedT0resolution);
	419	}
	420	}
	421	else if(option == kBest_T0){ // T0-T0 is used when available (T0-FILL otherwise) from ESD
	422	Float_t t0AC=-10000;
	423	Float_t t0A=-10000;
	424	Float_t t0C=-10000;
	425	if(flagT0T0){
	426	t0AC= event->GetT0TOF()[0];
	427	t0A= event->GetT0TOF()[1];
	428	t0C= event->GetT0TOF()[2];
	429	}
	430
	431	Float_t t0t0Best = 0;
	432	Float_t t0t0BestRes = 9999;
7eb68cb5	433	if(TMath::Abs(t0A) < t0cut && TMath::Abs(t0C) < t0cut && TMath::Abs(t0C-t0A) < 500){
f858b00e	434	t0t0Best = t0AC;
7eb68cb5	435	t0t0BestRes = resT0AC;
f858b00e	436	}
7eb68cb5	437	else if(TMath::Abs(t0C) < t0cut){
f858b00e	438	t0t0Best = t0C;
7eb68cb5	439	t0t0BestRes = resT0C;
	440	}
	441	else if(TMath::Abs(t0A) < t0cut){
	442	t0t0Best = t0A;
	443	t0t0BestRes = resT0A;
f858b00e	444	}
	445
	446	if(flagT0TOF){ // if T0-TOF info is available
	447	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
7eb68cb5	448	if(t0t0BestRes < 999){
7eb68cb5	449	if(startTimeRes[i] < t0spread){
f858b00e	450	Double_t wtot = 1./startTimeRes[i]/startTimeRes[i] + 1./t0t0BestRes/t0t0BestRes;
	451	Double_t t0best = startTime[i]/startTimeRes[i]/startTimeRes[i] + t0t0Best/t0t0BestRes/t0t0BestRes;
	452	estimatedT0event[i]=t0best / wtot;
	453	estimatedT0resolution[i]=1./TMath::Sqrt(wtot);
f858b00e	454	}
	455	else {
	456	estimatedT0event[i]=t0t0Best;
	457	estimatedT0resolution[i]=t0t0BestRes;
f858b00e	458	}
	459	}
	460	else{
	461	estimatedT0event[i]=startTime[i];
	462	estimatedT0resolution[i]=startTimeRes[i];
f858b00e	463	}
	464	}
	465	fTOFResponse.SetT0event(estimatedT0event);
	466	fTOFResponse.SetT0resolution(estimatedT0resolution);
	467	}
	468	else{ // if no T0-TOF info is available
	469	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
7eb68cb5	470	if(t0t0BestRes < 999){
f858b00e	471	estimatedT0event[i]=t0t0Best;
f858b00e	472	estimatedT0resolution[i]=t0t0BestRes;
f858b00e	473	}
	474	else{
	475	estimatedT0event[i]=0.0;
	476	estimatedT0resolution[i]=t0spread;
f858b00e	477	}
	478	}
	479	fTOFResponse.SetT0event(estimatedT0event);
	480	fTOFResponse.SetT0resolution(estimatedT0resolution);
	481	}
	482	}
7eb68cb5	483
f858b00e	484	else if(option == kT0_T0){ // the best of what available (T0-FILL otherwise) from ESD
	485	Float_t t0AC=-10000;
	486	Float_t t0A=-10000;
	487	Float_t t0C=-10000;
	488	if(flagT0T0){
	489	t0AC= event->GetT0TOF()[0];
	490	t0A= event->GetT0TOF()[1];
	491	t0C= event->GetT0TOF()[2];
	492	}
	493
7eb68cb5	494	if(TMath::Abs(t0A) < t0cut && TMath::Abs(t0C) < t0cut && TMath::Abs(t0C-t0A) < 500){
f858b00e	495	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
f858b00e	496	estimatedT0event[i]=t0AC;
7eb68cb5	497	estimatedT0resolution[i]=resT0AC;
f858b00e	498	}
f858b00e	499	}
7eb68cb5	500	else if(TMath::Abs(t0C) < t0cut){
f858b00e	501	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
7eb68cb5	502	estimatedT0event[i]=t0C;
7eb68cb5	503	estimatedT0resolution[i]=resT0C;
f858b00e	504	}
f858b00e	505	}
7eb68cb5	506	else if(TMath::Abs(t0A) < t0cut){
f858b00e	507	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
7eb68cb5	508	estimatedT0event[i]=t0A;
7eb68cb5	509	estimatedT0resolution[i]=resT0A;
f858b00e	510	}
	511	}
	512	else{
	513	for(Int_t i=0;i<fTOFResponse.GetNmomBins();i++){
	514	estimatedT0event[i]=0.0;
	515	estimatedT0resolution[i]=t0spread;
f858b00e	516	}
	517	}
	518	fTOFResponse.SetT0event(estimatedT0event);
	519	fTOFResponse.SetT0resolution(estimatedT0resolution);
	520	}
2f43a5ff	521	delete [] startTime;
	522	delete [] startTimeRes;
	523	delete [] estimatedT0event;
	524	delete [] estimatedT0resolution;
f858b00e	525	}