Fix compiler warnings
[u/mrichter/AliRoot.git] / STEER / AliReconstruction.cxx
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596a855f 1/**************************************************************************
2 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
3 * *
4 * Author: The ALICE Off-line Project. *
5 * Contributors are mentioned in the code where appropriate. *
6 * *
7 * Permission to use, copy, modify and distribute this software and its *
8 * documentation strictly for non-commercial purposes is hereby granted *
9 * without fee, provided that the above copyright notice appears in all *
10 * copies and that both the copyright notice and this permission notice *
11 * appear in the supporting documentation. The authors make no claims *
12 * about the suitability of this software for any purpose. It is *
13 * provided "as is" without express or implied warranty. *
14 **************************************************************************/
15
16/* $Id$ */
17
18///////////////////////////////////////////////////////////////////////////////
19// //
20// class for running the reconstruction //
21// //
22// Clusters and tracks are created for all detectors and all events by //
23// typing: //
24// //
25// AliReconstruction rec; //
26// rec.Run(); //
27// //
28// The Run method returns kTRUE in case of successful execution. //
c71de921 29// //
30// If the input to the reconstruction are not simulated digits but raw data, //
31// this can be specified by an argument of the Run method or by the method //
32// //
33// rec.SetInput("..."); //
34// //
35// The input formats and the corresponding argument are: //
36// - DDL raw data files: directory name, ends with "/" //
37// - raw data root file: root file name, extension ".root" //
38// - raw data DATE file: DATE file name, any other non-empty string //
39// - MC root files : empty string, default //
40// //
b26c3770 41// By default all events are reconstructed. The reconstruction can be //
42// limited to a range of events by giving the index of the first and the //
43// last event as an argument to the Run method or by calling //
44// //
45// rec.SetEventRange(..., ...); //
46// //
47// The index -1 (default) can be used for the last event to indicate no //
48// upper limit of the event range. //
49// //
973388c2 50// In case of raw-data reconstruction the user can modify the default //
51// number of events per digits/clusters/tracks file. In case the option //
52// is not used the number is set 1. In case the user provides 0, than //
53// the number of events is equal to the number of events inside the //
54// raw-data file (i.e. one digits/clusters/tracks file): //
55// //
56// rec.SetNumberOfEventsPerFile(...); //
57// //
58// //
596a855f 59// The name of the galice file can be changed from the default //
e583c30d 60// "galice.root" by passing it as argument to the AliReconstruction //
61// constructor or by //
596a855f 62// //
63// rec.SetGAliceFile("..."); //
64// //
59697224 65// The local reconstruction can be switched on or off for individual //
66// detectors by //
596a855f 67// //
59697224 68// rec.SetRunLocalReconstruction("..."); //
596a855f 69// //
70// The argument is a (case sensitive) string with the names of the //
71// detectors separated by a space. The special string "ALL" selects all //
72// available detectors. This is the default. //
73// //
c71de921 74// The reconstruction of the primary vertex position can be switched off by //
75// //
76// rec.SetRunVertexFinder(kFALSE); //
77// //
b8cd5251 78// The tracking and the creation of ESD tracks can be switched on for //
79// selected detectors by //
596a855f 80// //
b8cd5251 81// rec.SetRunTracking("..."); //
596a855f 82// //
c84a5e9e 83// Uniform/nonuniform field tracking switches (default: uniform field) //
84// //
1d99986f 85// rec.SetUniformFieldTracking(); ( rec.SetUniformFieldTracking(kFALSE); ) //
c84a5e9e 86// //
596a855f 87// The filling of additional ESD information can be steered by //
88// //
89// rec.SetFillESD("..."); //
90// //
b8cd5251 91// Again, for both methods the string specifies the list of detectors. //
92// The default is "ALL". //
93// //
94// The call of the shortcut method //
95// //
96// rec.SetRunReconstruction("..."); //
97// //
98// is equivalent to calling SetRunLocalReconstruction, SetRunTracking and //
99// SetFillESD with the same detector selecting string as argument. //
596a855f 100// //
c71de921 101// The reconstruction requires digits or raw data as input. For the creation //
102// of digits and raw data have a look at the class AliSimulation. //
596a855f 103// //
24f7a148 104// For debug purposes the method SetCheckPointLevel can be used. If the //
105// argument is greater than 0, files with ESD events will be written after //
106// selected steps of the reconstruction for each event: //
107// level 1: after tracking and after filling of ESD (final) //
108// level 2: in addition after each tracking step //
109// level 3: in addition after the filling of ESD for each detector //
110// If a final check point file exists for an event, this event will be //
111// skipped in the reconstruction. The tracking and the filling of ESD for //
112// a detector will be skipped as well, if the corresponding check point //
113// file exists. The ESD event will then be loaded from the file instead. //
114// //
596a855f 115///////////////////////////////////////////////////////////////////////////////
116
024a7e64 117#include <TArrayF.h>
118#include <TFile.h>
444753c6 119#include <TList.h>
024a7e64 120#include <TSystem.h>
121#include <TROOT.h>
122#include <TPluginManager.h>
3103d196 123#include <TGeoManager.h>
2bdb9d38 124#include <TLorentzVector.h>
3dd9f9e3 125#include <TArrayS.h>
126#include <TArrayD.h>
596a855f 127
128#include "AliReconstruction.h"
87932dab 129#include "AliCodeTimer.h"
b8cd5251 130#include "AliReconstructor.h"
815c2b38 131#include "AliLog.h"
596a855f 132#include "AliRunLoader.h"
133#include "AliRun.h"
b649205a 134#include "AliRawReaderFile.h"
135#include "AliRawReaderDate.h"
136#include "AliRawReaderRoot.h"
001397cd 137#include "AliRawEventHeaderBase.h"
af885e0f 138#include "AliESDEvent.h"
faffd83e 139#include "AliESDMuonTrack.h"
1d99986f 140#include "AliESDfriend.h"
2257f27e 141#include "AliESDVertex.h"
faffd83e 142#include "AliESDcascade.h"
143#include "AliESDkink.h"
144#include "AliESDtrack.h"
145#include "AliESDCaloCluster.h"
e649177a 146#include "AliESDCaloCells.h"
32e449be 147#include "AliMultiplicity.h"
c84a5e9e 148#include "AliTracker.h"
2257f27e 149#include "AliVertexer.h"
c5e3e5d1 150#include "AliVertexerTracks.h"
5e4ff34d 151#include "AliV0vertexer.h"
152#include "AliCascadeVertexer.h"
596a855f 153#include "AliHeader.h"
154#include "AliGenEventHeader.h"
b26c3770 155#include "AliPID.h"
596a855f 156#include "AliESDpid.h"
ff8bb5ae 157#include "AliESDtrack.h"
3dd9f9e3 158#include "AliESDPmdTrack.h"
f3a97c86 159
08e1a23e 160#include "AliESDTagCreator.h"
a1069ee1 161#include "AliAODTagCreator.h"
f3a97c86 162
25be1e5c 163#include "AliGeomManager.h"
98937d93 164#include "AliTrackPointArray.h"
b0314964 165#include "AliCDBManager.h"
795e4a22 166#include "AliCDBStorage.h"
6bae477a 167#include "AliCDBEntry.h"
168#include "AliAlignObj.h"
f3a97c86 169
b647652d 170#include "AliCentralTrigger.h"
171#include "AliCTPRawStream.h"
172
f29f1726 173#include "AliAODEvent.h"
174#include "AliAODHeader.h"
175#include "AliAODTrack.h"
176#include "AliAODVertex.h"
3dd9f9e3 177#include "AliAODv0.h"
178#include "AliAODJet.h"
179#include "AliAODCaloCells.h"
180#include "AliAODCaloCluster.h"
181#include "AliAODPmdCluster.h"
182#include "AliAODFmdCluster.h"
183#include "AliAODTracklets.h"
f29f1726 184
7e963665 185#include "AliQADataMaker.h"
c65c502a 186#include "AliQA.h"
187#include "AliQADataMakerSteer.h"
f29f1726 188
0f88822a 189#include "AliSysInfo.h" // memory snapshots
190
6efecea1 191
596a855f 192ClassImp(AliReconstruction)
193
194
c757bafd 195//_____________________________________________________________________________
b384f8a4 196const char* AliReconstruction::fgkDetectorName[AliReconstruction::fgkNDetectors] = {"ITS", "TPC", "TRD", "TOF", "PHOS", "HMPID", "EMCAL", "MUON", "FMD", "ZDC", "PMD", "T0", "VZERO", "ACORDE", "HLT"};
c757bafd 197
596a855f 198//_____________________________________________________________________________
795e4a22 199AliReconstruction::AliReconstruction(const char* gAliceFilename,
e583c30d 200 const char* name, const char* title) :
201 TNamed(name, title),
202
c84a5e9e 203 fUniformField(kTRUE),
2257f27e 204 fRunVertexFinder(kTRUE),
1f46a9ae 205 fRunHLTTracking(kFALSE),
e66fbafb 206 fRunMuonTracking(kFALSE),
d1683eef 207 fRunV0Finder(kTRUE),
208 fRunCascadeFinder(kTRUE),
1d99986f 209 fStopOnError(kFALSE),
210 fWriteAlignmentData(kFALSE),
211 fWriteESDfriend(kFALSE),
a7807689 212 fWriteAOD(kFALSE),
b647652d 213 fFillTriggerESD(kTRUE),
1d99986f 214
7f68891d 215 fCleanESD(kTRUE),
a023d8d8 216 fV0DCAmax(3.),
217 fV0CsPmin(0.),
7f68891d 218 fDmax(50.),
219 fZmax(50.),
220
1d99986f 221 fRunLocalReconstruction("ALL"),
b8cd5251 222 fRunTracking("ALL"),
e583c30d 223 fFillESD("ALL"),
48ce48d1 224 fUseTrackingErrorsForAlignment(""),
e583c30d 225 fGAliceFileName(gAliceFilename),
b649205a 226 fInput(""),
35042093 227 fEquipIdMap(""),
b26c3770 228 fFirstEvent(0),
229 fLastEvent(-1),
973388c2 230 fNumberOfEventsPerFile(1),
24f7a148 231 fCheckPointLevel(0),
b8cd5251 232 fOptions(),
6bae477a 233 fLoadAlignFromCDB(kTRUE),
234 fLoadAlignData("ALL"),
46698ae4 235 fESDPar(""),
e583c30d 236
237 fRunLoader(NULL),
b649205a 238 fRawReader(NULL),
b8cd5251 239
98937d93 240 fVertexer(NULL),
9178838a 241 fDiamondProfile(NULL),
87317a47 242 fMeanVertexConstraint(kTRUE),
98937d93 243
444753c6 244 fGRPList(NULL),
245
6bae477a 246 fAlignObjArray(NULL),
795e4a22 247 fCDBUri(),
759c1df1 248 fSpecCDBUri(),
795e4a22 249 fInitCDBCalled(kFALSE),
250 fSetRunNumberFromDataCalled(kFALSE),
7e963665 251 fRunQA(kTRUE),
252 fQAInLoop(kFALSE)
759c1df1 253
596a855f 254{
255// create reconstruction object with default parameters
b8cd5251 256
257 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
258 fReconstructor[iDet] = NULL;
259 fLoader[iDet] = NULL;
260 fTracker[iDet] = NULL;
7e963665 261 fQADataMaker[iDet] = NULL;
262 fQACycles[iDet] = 999999;
b8cd5251 263 }
e47c4c2e 264 AliPID pid;
596a855f 265}
266
267//_____________________________________________________________________________
268AliReconstruction::AliReconstruction(const AliReconstruction& rec) :
e583c30d 269 TNamed(rec),
270
c84a5e9e 271 fUniformField(rec.fUniformField),
2257f27e 272 fRunVertexFinder(rec.fRunVertexFinder),
1f46a9ae 273 fRunHLTTracking(rec.fRunHLTTracking),
e66fbafb 274 fRunMuonTracking(rec.fRunMuonTracking),
d1683eef 275 fRunV0Finder(rec.fRunV0Finder),
276 fRunCascadeFinder(rec.fRunCascadeFinder),
1d99986f 277 fStopOnError(rec.fStopOnError),
278 fWriteAlignmentData(rec.fWriteAlignmentData),
279 fWriteESDfriend(rec.fWriteESDfriend),
a7807689 280 fWriteAOD(rec.fWriteAOD),
b647652d 281 fFillTriggerESD(rec.fFillTriggerESD),
1d99986f 282
7f68891d 283 fCleanESD(rec.fCleanESD),
a023d8d8 284 fV0DCAmax(rec.fV0DCAmax),
5e5c1aa9 285 fV0CsPmin(rec.fV0CsPmin),
7f68891d 286 fDmax(rec.fDmax),
287 fZmax(rec.fZmax),
288
1d99986f 289 fRunLocalReconstruction(rec.fRunLocalReconstruction),
e583c30d 290 fRunTracking(rec.fRunTracking),
291 fFillESD(rec.fFillESD),
48ce48d1 292 fUseTrackingErrorsForAlignment(rec.fUseTrackingErrorsForAlignment),
e583c30d 293 fGAliceFileName(rec.fGAliceFileName),
b649205a 294 fInput(rec.fInput),
35042093 295 fEquipIdMap(rec.fEquipIdMap),
b26c3770 296 fFirstEvent(rec.fFirstEvent),
297 fLastEvent(rec.fLastEvent),
973388c2 298 fNumberOfEventsPerFile(rec.fNumberOfEventsPerFile),
24f7a148 299 fCheckPointLevel(0),
b8cd5251 300 fOptions(),
6bae477a 301 fLoadAlignFromCDB(rec.fLoadAlignFromCDB),
302 fLoadAlignData(rec.fLoadAlignData),
46698ae4 303 fESDPar(rec.fESDPar),
e583c30d 304
305 fRunLoader(NULL),
b649205a 306 fRawReader(NULL),
b8cd5251 307
98937d93 308 fVertexer(NULL),
9178838a 309 fDiamondProfile(NULL),
87317a47 310 fMeanVertexConstraint(rec.fMeanVertexConstraint),
98937d93 311
444753c6 312 fGRPList(NULL),
313
6bae477a 314 fAlignObjArray(rec.fAlignObjArray),
ec92bee0 315 fCDBUri(rec.fCDBUri),
7e963665 316 fSpecCDBUri(),
795e4a22 317 fInitCDBCalled(rec.fInitCDBCalled),
318 fSetRunNumberFromDataCalled(rec.fSetRunNumberFromDataCalled),
7e963665 319 fRunQA(kTRUE),
320 fQAInLoop(kFALSE)
321
596a855f 322{
323// copy constructor
324
ec92bee0 325 for (Int_t i = 0; i < rec.fOptions.GetEntriesFast(); i++) {
efd2085e 326 if (rec.fOptions[i]) fOptions.Add(rec.fOptions[i]->Clone());
327 }
b8cd5251 328 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
329 fReconstructor[iDet] = NULL;
330 fLoader[iDet] = NULL;
331 fTracker[iDet] = NULL;
7e963665 332 fQADataMaker[iDet] = NULL;
333 fQACycles[iDet] = rec.fQACycles[iDet];
b8cd5251 334 }
ec92bee0 335 for (Int_t i = 0; i < rec.fSpecCDBUri.GetEntriesFast(); i++) {
336 if (rec.fSpecCDBUri[i]) fSpecCDBUri.Add(rec.fSpecCDBUri[i]->Clone());
337 }
596a855f 338}
339
340//_____________________________________________________________________________
341AliReconstruction& AliReconstruction::operator = (const AliReconstruction& rec)
342{
343// assignment operator
344
345 this->~AliReconstruction();
346 new(this) AliReconstruction(rec);
347 return *this;
348}
349
350//_____________________________________________________________________________
351AliReconstruction::~AliReconstruction()
352{
353// clean up
354
e583c30d 355 CleanUp();
efd2085e 356 fOptions.Delete();
ec92bee0 357 fSpecCDBUri.Delete();
87932dab 358
359 AliCodeTimer::Instance()->Print();
596a855f 360}
361
024cf675 362//_____________________________________________________________________________
795e4a22 363void AliReconstruction::InitCDB()
024cf675 364{
365// activate a default CDB storage
366// First check if we have any CDB storage set, because it is used
367// to retrieve the calibration and alignment constants
368
795e4a22 369 if (fInitCDBCalled) return;
370 fInitCDBCalled = kTRUE;
371
024cf675 372 AliCDBManager* man = AliCDBManager::Instance();
ec92bee0 373 if (man->IsDefaultStorageSet())
024cf675 374 {
375 AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
ec92bee0 376 AliWarning("Default CDB storage has been already set !");
377 AliWarning(Form("Ignoring the default storage declared in AliReconstruction: %s",fCDBUri.Data()));
024cf675 378 AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
795e4a22 379 fCDBUri = man->GetDefaultStorage()->GetURI();
ec92bee0 380 }
381 else {
795e4a22 382 if (fCDBUri.Length() > 0)
383 {
384 AliDebug(2,"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
385 AliDebug(2, Form("Default CDB storage is set to: %s", fCDBUri.Data()));
386 AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
387 } else {
388 fCDBUri="local://$ALICE_ROOT";
389 AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
390 AliWarning("Default CDB storage not yet set !!!!");
391 AliWarning(Form("Setting it now to: %s", fCDBUri.Data()));
392 AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
393
394 }
ec92bee0 395 man->SetDefaultStorage(fCDBUri);
396 }
397
398 // Now activate the detector specific CDB storage locations
c3a7b59a 399 for (Int_t i = 0; i < fSpecCDBUri.GetEntriesFast(); i++) {
400 TObject* obj = fSpecCDBUri[i];
401 if (!obj) continue;
b8ec52f6 402 AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
403 AliDebug(2, Form("Specific CDB storage for %s is set to: %s",obj->GetName(),obj->GetTitle()));
404 AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
c3a7b59a 405 man->SetSpecificStorage(obj->GetName(), obj->GetTitle());
ec92bee0 406 }
795e4a22 407
024cf675 408}
409
410//_____________________________________________________________________________
411void AliReconstruction::SetDefaultStorage(const char* uri) {
ec92bee0 412// Store the desired default CDB storage location
413// Activate it later within the Run() method
024cf675 414
ec92bee0 415 fCDBUri = uri;
024cf675 416
417}
418
00aa02d5 419//_____________________________________________________________________________
c3a7b59a 420void AliReconstruction::SetSpecificStorage(const char* calibType, const char* uri) {
ec92bee0 421// Store a detector-specific CDB storage location
422// Activate it later within the Run() method
024cf675 423
c3a7b59a 424 AliCDBPath aPath(calibType);
425 if(!aPath.IsValid()){
426 // if calibType is not wildcard but it is a valid detector, add "/*" to make it a valid path
427 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
428 if(!strcmp(calibType, fgkDetectorName[iDet])) {
429 aPath.SetPath(Form("%s/*", calibType));
430 AliInfo(Form("Path for specific storage set to %s", aPath.GetPath().Data()));
431 break;
432 }
433 }
434 if(!aPath.IsValid()){
435 AliError(Form("Not a valid path or detector: %s", calibType));
436 return;
437 }
438 }
439
53dd3c3d 440// // check that calibType refers to a "valid" detector name
441// Bool_t isDetector = kFALSE;
442// for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
443// TString detName = fgkDetectorName[iDet];
444// if(aPath.GetLevel0() == detName) {
445// isDetector = kTRUE;
446// break;
447// }
448// }
449//
450// if(!isDetector) {
451// AliError(Form("Not a valid detector: %s", aPath.GetLevel0().Data()));
452// return;
453// }
c3a7b59a 454
455 TObject* obj = fSpecCDBUri.FindObject(aPath.GetPath().Data());
ec92bee0 456 if (obj) fSpecCDBUri.Remove(obj);
c3a7b59a 457 fSpecCDBUri.Add(new TNamed(aPath.GetPath().Data(), uri));
024cf675 458
459}
460
6bae477a 461//_____________________________________________________________________________
795e4a22 462Bool_t AliReconstruction::SetRunNumberFromData()
6bae477a 463{
464 // The method is called in Run() in order
465 // to set a correct run number.
466 // In case of raw data reconstruction the
467 // run number is taken from the raw data header
468
795e4a22 469 if (fSetRunNumberFromDataCalled) return kTRUE;
470 fSetRunNumberFromDataCalled = kTRUE;
471
472 AliCDBManager* man = AliCDBManager::Instance();
473
474 if(man->GetRun() > 0) {
475 AliWarning("Run number is taken from event header! Ignoring settings in AliCDBManager!");
476 }
477
478 if (!fRunLoader) {
6bae477a 479 AliError("No run loader is found !");
480 return kFALSE;
481 }
482 // read run number from gAlice
ec92bee0 483 if(fRunLoader->GetAliRun())
f2ee4290 484 AliCDBManager::Instance()->SetRun(fRunLoader->GetHeader()->GetRun());
ec92bee0 485 else {
486 if(fRawReader) {
487 if(fRawReader->NextEvent()) {
488 AliCDBManager::Instance()->SetRun(fRawReader->GetRunNumber());
489 fRawReader->RewindEvents();
490 }
491 else {
492 AliError("No raw-data events found !");
493 return kFALSE;
494 }
495 }
496 else {
497 AliError("Neither gAlice nor RawReader objects are found !");
498 return kFALSE;
499 }
6bae477a 500 }
795e4a22 501
502 man->Print();
503
6bae477a 504 return kTRUE;
505}
506
795e4a22 507//_____________________________________________________________________________
508void AliReconstruction::SetCDBLock() {
509 // Set CDB lock: from now on it is forbidden to reset the run number
510 // or the default storage or to activate any further storage!
511
512 AliCDBManager::Instance()->SetLock(1);
513}
514
6bae477a 515//_____________________________________________________________________________
516Bool_t AliReconstruction::MisalignGeometry(const TString& detectors)
517{
518 // Read the alignment objects from CDB.
519 // Each detector is supposed to have the
520 // alignment objects in DET/Align/Data CDB path.
521 // All the detector objects are then collected,
522 // sorted by geometry level (starting from ALIC) and
523 // then applied to the TGeo geometry.
524 // Finally an overlaps check is performed.
525
526 // Load alignment data from CDB and fill fAlignObjArray
527 if(fLoadAlignFromCDB){
6bae477a 528
25be1e5c 529 TString detStr = detectors;
530 TString loadAlObjsListOfDets = "";
531
532 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
533 if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
534 loadAlObjsListOfDets += fgkDetectorName[iDet];
535 loadAlObjsListOfDets += " ";
536 } // end loop over detectors
53dd3c3d 537 loadAlObjsListOfDets.Prepend("GRP "); //add alignment objects for non-sensitive modules
98e303d9 538 AliGeomManager::ApplyAlignObjsFromCDB(loadAlObjsListOfDets.Data());
25be1e5c 539 }else{
540 // Check if the array with alignment objects was
541 // provided by the user. If yes, apply the objects
542 // to the present TGeo geometry
543 if (fAlignObjArray) {
544 if (gGeoManager && gGeoManager->IsClosed()) {
98e303d9 545 if (AliGeomManager::ApplyAlignObjsToGeom(*fAlignObjArray) == kFALSE) {
25be1e5c 546 AliError("The misalignment of one or more volumes failed!"
547 "Compare the list of simulated detectors and the list of detector alignment data!");
548 return kFALSE;
549 }
550 }
551 else {
552 AliError("Can't apply the misalignment! gGeoManager doesn't exist or it is still opened!");
6bae477a 553 return kFALSE;
554 }
555 }
6bae477a 556 }
25be1e5c 557
8e245d15 558 delete fAlignObjArray; fAlignObjArray=0;
a03b0371 559
6bae477a 560 return kTRUE;
561}
596a855f 562
563//_____________________________________________________________________________
564void AliReconstruction::SetGAliceFile(const char* fileName)
565{
566// set the name of the galice file
567
568 fGAliceFileName = fileName;
569}
570
efd2085e 571//_____________________________________________________________________________
572void AliReconstruction::SetOption(const char* detector, const char* option)
573{
574// set options for the reconstruction of a detector
575
576 TObject* obj = fOptions.FindObject(detector);
577 if (obj) fOptions.Remove(obj);
578 fOptions.Add(new TNamed(detector, option));
579}
580
596a855f 581
582//_____________________________________________________________________________
4a33489c 583Bool_t AliReconstruction::Run(const char* input)
596a855f 584{
585// run the reconstruction
586
87932dab 587 AliCodeTimerAuto("")
588
b649205a 589 // set the input
590 if (!input) input = fInput.Data();
591 TString fileName(input);
592 if (fileName.EndsWith("/")) {
593 fRawReader = new AliRawReaderFile(fileName);
594 } else if (fileName.EndsWith(".root")) {
595 fRawReader = new AliRawReaderRoot(fileName);
596 } else if (!fileName.IsNull()) {
597 fRawReader = new AliRawReaderDate(fileName);
598 fRawReader->SelectEvents(7);
599 }
35042093 600 if (!fEquipIdMap.IsNull() && fRawReader)
601 fRawReader->LoadEquipmentIdsMap(fEquipIdMap);
602
0f88822a 603 AliSysInfo::AddStamp("Start");
f08fc9f5 604 // get the run loader
605 if (!InitRunLoader()) return kFALSE;
0f88822a 606 AliSysInfo::AddStamp("LoadLoader");
596a855f 607
ec92bee0 608 // Initialize the CDB storage
795e4a22 609 InitCDB();
610
611 AliSysInfo::AddStamp("LoadCDB");
ec92bee0 612
6bae477a 613 // Set run number in CDBManager (if it is not already set by the user)
795e4a22 614 if (!SetRunNumberFromData()) if (fStopOnError) return kFALSE;
615
616 // Set CDB lock: from now on it is forbidden to reset the run number
617 // or the default storage or to activate any further storage!
618 SetCDBLock();
619
6bae477a 620 // Import ideal TGeo geometry and apply misalignment
621 if (!gGeoManager) {
622 TString geom(gSystem->DirName(fGAliceFileName));
623 geom += "/geometry.root";
98e303d9 624 AliGeomManager::LoadGeometry(geom.Data());
6bae477a 625 if (!gGeoManager) if (fStopOnError) return kFALSE;
626 }
8e245d15 627
6bae477a 628 if (!MisalignGeometry(fLoadAlignData)) if (fStopOnError) return kFALSE;
0f88822a 629 AliSysInfo::AddStamp("LoadGeom");
6bae477a 630
e0176e97 631 //QA
632 AliQADataMakerSteer qas ;
633 if ( fRunQA && fRawReader)
a1b90a73 634 qas.Run("ALL", fRawReader) ;
e0176e97 635
636 // checking the QA of previous steps
637 CheckQA() ;
638
596a855f 639 // local reconstruction
59697224 640 if (!fRunLocalReconstruction.IsNull()) {
641 if (!RunLocalReconstruction(fRunLocalReconstruction)) {
e583c30d 642 if (fStopOnError) {CleanUp(); return kFALSE;}
596a855f 643 }
644 }
b26c3770 645// if (!fRunVertexFinder && fRunTracking.IsNull() &&
646// fFillESD.IsNull()) return kTRUE;
2257f27e 647
648 // get vertexer
649 if (fRunVertexFinder && !CreateVertexer()) {
650 if (fStopOnError) {
651 CleanUp();
652 return kFALSE;
653 }
654 }
0f88822a 655 AliSysInfo::AddStamp("Vertexer");
596a855f 656
f08fc9f5 657 // get trackers
b8cd5251 658 if (!fRunTracking.IsNull() && !CreateTrackers(fRunTracking)) {
24f7a148 659 if (fStopOnError) {
660 CleanUp();
661 return kFALSE;
662 }
596a855f 663 }
0f88822a 664 AliSysInfo::AddStamp("LoadTrackers");
24f7a148 665
b26c3770 666 // get the possibly already existing ESD file and tree
af885e0f 667 AliESDEvent* esd = new AliESDEvent(); AliESDEvent* hltesd = new AliESDEvent();
b26c3770 668 TFile* fileOld = NULL;
1f46a9ae 669 TTree* treeOld = NULL; TTree *hlttreeOld = NULL;
b26c3770 670 if (!gSystem->AccessPathName("AliESDs.root")){
671 gSystem->CopyFile("AliESDs.root", "AliESDs.old.root", kTRUE);
672 fileOld = TFile::Open("AliESDs.old.root");
673 if (fileOld && fileOld->IsOpen()) {
674 treeOld = (TTree*) fileOld->Get("esdTree");
46698ae4 675 if (treeOld)esd->ReadFromTree(treeOld);
1f46a9ae 676 hlttreeOld = (TTree*) fileOld->Get("HLTesdTree");
46698ae4 677 if (hlttreeOld) hltesd->ReadFromTree(hlttreeOld);
b26c3770 678 }
679 }
680
36711aa4 681 // create the ESD output file and tree
596a855f 682 TFile* file = TFile::Open("AliESDs.root", "RECREATE");
46698ae4 683 file->SetCompressionLevel(2);
596a855f 684 if (!file->IsOpen()) {
815c2b38 685 AliError("opening AliESDs.root failed");
b26c3770 686 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
596a855f 687 }
46698ae4 688
36711aa4 689 TTree* tree = new TTree("esdTree", "Tree with ESD objects");
af885e0f 690 esd = new AliESDEvent();
46698ae4 691 esd->CreateStdContent();
692 esd->WriteToTree(tree);
693
1f46a9ae 694 TTree* hlttree = new TTree("HLTesdTree", "Tree with HLT ESD objects");
af885e0f 695 hltesd = new AliESDEvent();
46698ae4 696 hltesd->CreateStdContent();
697 hltesd->WriteToTree(hlttree);
698
699 /* CKB Why?
1f46a9ae 700 delete esd; delete hltesd;
701 esd = NULL; hltesd = NULL;
46698ae4 702 */
500d54ab 703 // create the branch with ESD additions
5728d3d5 704
705
706
46698ae4 707 AliESDfriend *esdf = 0;
1d99986f 708 if (fWriteESDfriend) {
46698ae4 709 esdf = new AliESDfriend();
710 TBranch *br=tree->Branch("ESDfriend.","AliESDfriend", &esdf);
711 br->SetFile("AliESDfriends.root");
712 esd->AddObject(esdf);
1d99986f 713 }
5728d3d5 714
46698ae4 715
444753c6 716 // Get the GRP CDB entry
717 AliCDBEntry* entryGRP = AliCDBManager::Instance()->Get("GRP/GRP/Data");
718
719 if(entryGRP) {
720 fGRPList = dynamic_cast<TList*> (entryGRP->GetObject());
721 } else {
722 AliError("No GRP entry found in OCDB!");
723 }
724
17c86e90 725 // Get the diamond profile from OCDB
726 AliCDBEntry* entry = AliCDBManager::Instance()
727 ->Get("GRP/Calib/MeanVertex");
728
729 if(entry) {
730 fDiamondProfile = dynamic_cast<AliESDVertex*> (entry->GetObject());
731 } else {
732 AliError("No diamond profile found in OCDB!");
733 }
734
20e5681c 735 AliVertexerTracks tVertexer(AliTracker::GetBz());
87317a47 736 if(fDiamondProfile && fMeanVertexConstraint) tVertexer.SetVtxStart(fDiamondProfile);
c5e3e5d1 737
596a855f 738 // loop over events
a5fa6165 739
b649205a 740 if (fRawReader) fRawReader->RewindEvents();
a5fa6165 741 TString detStr(fFillESD) ;
742
95cee32f 743 ProcInfo_t ProcInfo;
744 gSystem->GetProcInfo(&ProcInfo);
745 AliInfo(Form("Current memory usage %d %d", ProcInfo.fMemResident, ProcInfo.fMemVirtual));
8661738e 746
596a855f 747 for (Int_t iEvent = 0; iEvent < fRunLoader->GetNumberOfEvents(); iEvent++) {
b26c3770 748 if (fRawReader) fRawReader->NextEvent();
4a33489c 749 if ((iEvent < fFirstEvent) || ((fLastEvent >= 0) && (iEvent > fLastEvent))) {
b26c3770 750 // copy old ESD to the new one
751 if (treeOld) {
46698ae4 752 esd->ReadFromTree(treeOld);
b26c3770 753 treeOld->GetEntry(iEvent);
754 }
755 tree->Fill();
1f46a9ae 756 if (hlttreeOld) {
46698ae4 757 esd->ReadFromTree(hlttreeOld);
1f46a9ae 758 hlttreeOld->GetEntry(iEvent);
759 }
760 hlttree->Fill();
b26c3770 761 continue;
762 }
46698ae4 763
815c2b38 764 AliInfo(Form("processing event %d", iEvent));
596a855f 765 fRunLoader->GetEvent(iEvent);
24f7a148 766
bb0901a4 767 char aFileName[256];
768 sprintf(aFileName, "ESD_%d.%d_final.root",
f08fc9f5 769 fRunLoader->GetHeader()->GetRun(),
770 fRunLoader->GetHeader()->GetEventNrInRun());
bb0901a4 771 if (!gSystem->AccessPathName(aFileName)) continue;
24f7a148 772
b26c3770 773 // local reconstruction
774 if (!fRunLocalReconstruction.IsNull()) {
775 if (!RunLocalEventReconstruction(fRunLocalReconstruction)) {
776 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
777 }
778 }
779
46698ae4 780
f08fc9f5 781 esd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
1f46a9ae 782 hltesd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
31fd97b2 783 esd->SetEventNumberInFile(fRunLoader->GetHeader()->GetEventNrInRun());
784 hltesd->SetEventNumberInFile(fRunLoader->GetHeader()->GetEventNrInRun());
46698ae4 785
d6ee376f 786 // Set magnetic field from the tracker
787 esd->SetMagneticField(AliTracker::GetBz());
788 hltesd->SetMagneticField(AliTracker::GetBz());
596a855f 789
46698ae4 790
791
2e3550da 792 // Fill raw-data error log into the ESD
793 if (fRawReader) FillRawDataErrorLog(iEvent,esd);
794
2257f27e 795 // vertex finder
796 if (fRunVertexFinder) {
797 if (!ReadESD(esd, "vertex")) {
798 if (!RunVertexFinder(esd)) {
b26c3770 799 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
2257f27e 800 }
801 if (fCheckPointLevel > 0) WriteESD(esd, "vertex");
802 }
803 }
804
1f46a9ae 805 // HLT tracking
806 if (!fRunTracking.IsNull()) {
807 if (fRunHLTTracking) {
808 hltesd->SetVertex(esd->GetVertex());
809 if (!RunHLTTracking(hltesd)) {
810 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
811 }
812 }
813 }
814
e66fbafb 815 // Muon tracking
b8cd5251 816 if (!fRunTracking.IsNull()) {
e66fbafb 817 if (fRunMuonTracking) {
761350a6 818 if (!RunMuonTracking(esd)) {
b26c3770 819 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
24f7a148 820 }
596a855f 821 }
822 }
823
e66fbafb 824 // barrel tracking
825 if (!fRunTracking.IsNull()) {
21c573b7 826 if (!ReadESD(esd, "tracking")) {
827 if (!RunTracking(esd)) {
828 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
e66fbafb 829 }
21c573b7 830 if (fCheckPointLevel > 0) WriteESD(esd, "tracking");
e66fbafb 831 }
832 }
21c573b7 833
596a855f 834 // fill ESD
835 if (!fFillESD.IsNull()) {
836 if (!FillESD(esd, fFillESD)) {
b26c3770 837 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
596a855f 838 }
839 }
a5fa6165 840
c65c502a 841// if (!fFillESD.IsNull())
7e963665 842
843 // do QA in the event loop if requested
844 if (fQAInLoop)
845 RunQA(fFillESD.Data(), esd);
a5fa6165 846
001397cd 847 // fill Event header information from the RawEventHeader
848 if (fRawReader){FillRawEventHeaderESD(esd);}
596a855f 849
850 // combined PID
851 AliESDpid::MakePID(esd);
24f7a148 852 if (fCheckPointLevel > 1) WriteESD(esd, "PID");
596a855f 853
b647652d 854 if (fFillTriggerESD) {
855 if (!ReadESD(esd, "trigger")) {
856 if (!FillTriggerESD(esd)) {
857 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
858 }
859 if (fCheckPointLevel > 1) WriteESD(esd, "trigger");
860 }
861 }
862
a6ee503a 863 file->cd();
864
a03cd2e0 865 //Try to improve the reconstructed primary vertex position using the tracks
c060d7fe 866 AliESDVertex *pvtx=0;
867 Bool_t dovertex=kTRUE;
868 TObject* obj = fOptions.FindObject("ITS");
869 if (obj) {
870 TString optITS = obj->GetTitle();
871 if (optITS.Contains("cosmics") || optITS.Contains("COSMICS"))
872 dovertex=kFALSE;
873 }
874 if(dovertex) pvtx=tVertexer.FindPrimaryVertex(esd);
17c86e90 875 if(fDiamondProfile) esd->SetDiamond(fDiamondProfile);
876
a03cd2e0 877 if (pvtx)
878 if (pvtx->GetStatus()) {
879 // Store the improved primary vertex
880 esd->SetPrimaryVertex(pvtx);
881 // Propagate the tracks to the DCA to the improved primary vertex
882 Double_t somethingbig = 777.;
883 Double_t bz = esd->GetMagneticField();
884 Int_t nt=esd->GetNumberOfTracks();
885 while (nt--) {
886 AliESDtrack *t = esd->GetTrack(nt);
887 t->RelateToVertex(pvtx, bz, somethingbig);
888 }
889 }
c5e3e5d1 890
d1683eef 891 if (fRunV0Finder) {
892 // V0 finding
893 AliV0vertexer vtxer;
894 vtxer.Tracks2V0vertices(esd);
5e4ff34d 895
d1683eef 896 if (fRunCascadeFinder) {
897 // Cascade finding
898 AliCascadeVertexer cvtxer;
899 cvtxer.V0sTracks2CascadeVertices(esd);
900 }
5e4ff34d 901 }
902
596a855f 903 // write ESD
d64bd07d 904 if (fCleanESD) CleanESD(esd);
1d99986f 905 if (fWriteESDfriend) {
99f99e0e 906 esdf->~AliESDfriend();
46698ae4 907 new (esdf) AliESDfriend(); // Reset...
908 esd->GetESDfriend(esdf);
1d99986f 909 }
500d54ab 910 tree->Fill();
911
912 // write HLT ESD
913 hlttree->Fill();
1d99986f 914
f3a97c86 915 if (fCheckPointLevel > 0) WriteESD(esd, "final");
46698ae4 916 esd->Reset();
917 hltesd->Reset();
5728d3d5 918 if (fWriteESDfriend) {
99f99e0e 919 esdf->~AliESDfriend();
5728d3d5 920 new (esdf) AliESDfriend(); // Reset...
921 }
46698ae4 922 // esdf->Reset();
923 // delete esdf; esdf = 0;
a5fa6165 924 // ESD QA
925
95cee32f 926 gSystem->GetProcInfo(&ProcInfo);
927 AliInfo(Form("Event %d -> Current memory usage %d %d",iEvent, ProcInfo.fMemResident, ProcInfo.fMemVirtual));
a5fa6165 928 }
929
930 detStr = fFillESD ;
7e963665 931
932
933 // write quality assurance ESDs data (one entry for all events)
934 if (fQAInLoop) {
935 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
936 if (!IsSelected(fgkDetectorName[iDet], detStr))
937 continue;
938 AliQADataMaker * qadm = GetQADataMaker(iDet);
939 if (!qadm) continue;
940 qadm->EndOfCycle(AliQA::kRECPOINTS);
941 qadm->EndOfCycle(AliQA::kESDS);
942 qadm->Finish();
943 }
944 }
5728d3d5 945
46698ae4 946 tree->GetUserInfo()->Add(esd);
947 hlttree->GetUserInfo()->Add(hltesd);
f747912b 948
949 const TMap *cdbMap = AliCDBManager::Instance()->GetStorageMap();
950 const TList *cdbList = AliCDBManager::Instance()->GetRetrievedIds();
951
952 TMap *cdbMapCopy = new TMap(cdbMap->GetEntries());
953 cdbMapCopy->SetOwner(1);
954 cdbMapCopy->SetName("cdbMap");
955 TIter iter(cdbMap->GetTable());
956
957 TPair* pair = 0;
958 while((pair = dynamic_cast<TPair*> (iter.Next()))){
959 TObjString* keyStr = dynamic_cast<TObjString*> (pair->Key());
960 TObjString* valStr = dynamic_cast<TObjString*> (pair->Value());
961 cdbMapCopy->Add(new TObjString(keyStr->GetName()), new TObjString(valStr->GetName()));
962 }
963
964 TList *cdbListCopy = new TList();
965 cdbListCopy->SetOwner(1);
966 cdbListCopy->SetName("cdbList");
967
968 TIter iter2(cdbList);
969
970 AliCDBId* id=0;
971 while((id = dynamic_cast<AliCDBId*> (iter2.Next()))){
a4970db9 972 cdbListCopy->Add(new TObjString(id->ToString().Data()));
f747912b 973 }
974
975 tree->GetUserInfo()->Add(cdbMapCopy);
976 tree->GetUserInfo()->Add(cdbListCopy);
abe0c04e 977
46698ae4 978
979 if(fESDPar.Contains("ESD.par")){
980 AliInfo("Attaching ESD.par to Tree");
981 TNamed *fn = CopyFileToTNamed(fESDPar.Data(),"ESD.par");
982 tree->GetUserInfo()->Add(fn);
596a855f 983 }
984
46698ae4 985
36711aa4 986 file->cd();
a9c0e6db 987 if (fWriteESDfriend)
988 tree->SetBranchStatus("ESDfriend*",0);
562dd0b4 989 // we want to have only one tree version number
990 tree->Write(tree->GetName(),TObject::kOverwrite);
1f46a9ae 991 hlttree->Write();
f3a97c86 992
a7807689 993 if (fWriteAOD) {
f29f1726 994 TFile *aodFile = TFile::Open("AliAOD.root", "RECREATE");
995 ESDFile2AODFile(file, aodFile);
996 aodFile->Close();
a7807689 997 }
998
46698ae4 999 gROOT->cd();
151e0c96 1000 CleanUp(file, fileOld);
795e4a22 1001
f3a97c86 1002 // Create tags for the events in the ESD tree (the ESD tree is always present)
1003 // In case of empty events the tags will contain dummy values
08e1a23e 1004 AliESDTagCreator *esdtagCreator = new AliESDTagCreator();
444753c6 1005 esdtagCreator->CreateESDTags(fFirstEvent,fLastEvent,fGRPList);
a1069ee1 1006 if (fWriteAOD) {
1007 AliAODTagCreator *aodtagCreator = new AliAODTagCreator();
444753c6 1008 aodtagCreator->CreateAODTags(fFirstEvent,fLastEvent,fGRPList);
a1069ee1 1009 }
596a855f 1010
7e963665 1011 //QA fone outside the event loop
1012 if (!fQAInLoop) {
1013 if ( fRunQA ) {
1014 qas.Run(fRunLocalReconstruction.Data(), AliQA::kRECPOINTS) ;
1015 // qas.Reset() ;
1016 qas.Run(fRunTracking.Data(), AliQA::kESDS) ;
1017 }
759c1df1 1018 }
795e4a22 1019
1020 // Cleanup of CDB manager: cache and active storages!
1021 AliCDBManager::Instance()->ClearCache();
1022
1023
596a855f 1024 return kTRUE;
1025}
1026
1027
1028//_____________________________________________________________________________
59697224 1029Bool_t AliReconstruction::RunLocalReconstruction(const TString& detectors)
596a855f 1030{
59697224 1031// run the local reconstruction
0f88822a 1032 static Int_t eventNr=0;
87932dab 1033 AliCodeTimerAuto("")
030b532d 1034
d76c31f4 1035 // AliCDBManager* man = AliCDBManager::Instance();
1036// Bool_t origCache = man->GetCacheFlag();
8e245d15 1037
d76c31f4 1038// TString detStr = detectors;
1039// for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1040// if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
1041// AliReconstructor* reconstructor = GetReconstructor(iDet);
1042// if (!reconstructor) continue;
1043// if (reconstructor->HasLocalReconstruction()) continue;
b8cd5251 1044
d76c31f4 1045// AliCodeTimerStart(Form("running reconstruction for %s", fgkDetectorName[iDet]));
1046// AliInfo(Form("running reconstruction for %s", fgkDetectorName[iDet]));
87932dab 1047
d76c31f4 1048// AliCodeTimerStart(Form("Loading calibration data from OCDB for %s", fgkDetectorName[iDet]));
1049// AliInfo(Form("Loading calibration data from OCDB for %s", fgkDetectorName[iDet]));
8e245d15 1050
d76c31f4 1051// man->SetCacheFlag(kTRUE);
1052// TString calibPath = Form("%s/Calib/*", fgkDetectorName[iDet]);
1053// man->GetAll(calibPath); // entries are cached!
8e245d15 1054
d76c31f4 1055// AliCodeTimerStop(Form("Loading calibration data from OCDB for %s", fgkDetectorName[iDet]));
87932dab 1056
d76c31f4 1057// if (fRawReader) {
1058// fRawReader->RewindEvents();
1059// reconstructor->Reconstruct(fRunLoader, fRawReader);
1060// } else {
1061// reconstructor->Reconstruct(fRunLoader);
1062// }
87932dab 1063
d76c31f4 1064// AliCodeTimerStop(Form("running reconstruction for %s", fgkDetectorName[iDet]));
0f88822a 1065 // AliSysInfo::AddStamp(Form("LRec%s_%d",fgkDetectorName[iDet],eventNr));
8e245d15 1066
d76c31f4 1067// // unload calibration data
1068// man->UnloadFromCache(calibPath);
1069// //man->ClearCache();
1070// }
596a855f 1071
d76c31f4 1072// man->SetCacheFlag(origCache);
8e245d15 1073
d76c31f4 1074// if ((detStr.CompareTo("ALL") != 0) && !detStr.IsNull()) {
1075// AliError(Form("the following detectors were not found: %s",
1076// detStr.Data()));
1077// if (fStopOnError) return kFALSE;
1078// }
596a855f 1079
0f88822a 1080 eventNr++;
596a855f 1081 return kTRUE;
1082}
1083
b26c3770 1084//_____________________________________________________________________________
1085Bool_t AliReconstruction::RunLocalEventReconstruction(const TString& detectors)
1086{
1087// run the local reconstruction
0f88822a 1088 static Int_t eventNr=0;
87932dab 1089 AliCodeTimerAuto("")
b26c3770 1090
1091 TString detStr = detectors;
1092 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1093 if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
1094 AliReconstructor* reconstructor = GetReconstructor(iDet);
1095 if (!reconstructor) continue;
1096 AliLoader* loader = fLoader[iDet];
d76c31f4 1097 if (!loader) {
1098 AliWarning(Form("No loader is defined for %s!",fgkDetectorName[iDet]));
1099 continue;
1100 }
b26c3770 1101
1102 // conversion of digits
1103 if (fRawReader && reconstructor->HasDigitConversion()) {
1104 AliInfo(Form("converting raw data digits into root objects for %s",
1105 fgkDetectorName[iDet]));
87932dab 1106 AliCodeTimerAuto(Form("converting raw data digits into root objects for %s",
1107 fgkDetectorName[iDet]));
b26c3770 1108 loader->LoadDigits("update");
1109 loader->CleanDigits();
1110 loader->MakeDigitsContainer();
1111 TTree* digitsTree = loader->TreeD();
1112 reconstructor->ConvertDigits(fRawReader, digitsTree);
1113 loader->WriteDigits("OVERWRITE");
1114 loader->UnloadDigits();
b26c3770 1115 }
1116
1117 // local reconstruction
b26c3770 1118 AliInfo(Form("running reconstruction for %s", fgkDetectorName[iDet]));
87932dab 1119 AliCodeTimerAuto(Form("running reconstruction for %s", fgkDetectorName[iDet]));
b26c3770 1120 loader->LoadRecPoints("update");
1121 loader->CleanRecPoints();
1122 loader->MakeRecPointsContainer();
1123 TTree* clustersTree = loader->TreeR();
1124 if (fRawReader && !reconstructor->HasDigitConversion()) {
1125 reconstructor->Reconstruct(fRawReader, clustersTree);
1126 } else {
1127 loader->LoadDigits("read");
1128 TTree* digitsTree = loader->TreeD();
1129 if (!digitsTree) {
1130 AliError(Form("Can't get the %s digits tree", fgkDetectorName[iDet]));
1131 if (fStopOnError) return kFALSE;
1132 } else {
1133 reconstructor->Reconstruct(digitsTree, clustersTree);
1134 }
1135 loader->UnloadDigits();
1136 }
d76c31f4 1137
7e963665 1138 // do QA in the event loop if requested
1139 if (fQAInLoop) {
1140 AliQADataMaker * qadm = GetQADataMaker(iDet);
1141 if (qadm) {
1142 AliCodeTimerStart(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
1143 AliInfo(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
1144 if (qadm->IsCycleDone() ) {
1145 qadm->EndOfCycle(AliQA::kRECPOINTS) ;
1146 qadm->EndOfCycle(AliQA::kESDS) ;
1147 qadm->StartOfCycle(AliQA::kRECPOINTS) ;
1148 qadm->StartOfCycle(AliQA::kESDS, "same") ;
1149 }
1150 qadm->Exec(AliQA::kRECPOINTS, clustersTree) ;
1151 AliCodeTimerStop(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
1152 }
1153 }
d76c31f4 1154
7e963665 1155 loader->WriteRecPoints("OVERWRITE");
b26c3770 1156 loader->UnloadRecPoints();
6efecea1 1157 AliSysInfo::AddStamp(Form("LRec%s_%d",fgkDetectorName[iDet],eventNr), iDet,1,eventNr);
b26c3770 1158 }
1159
1160 if ((detStr.CompareTo("ALL") != 0) && !detStr.IsNull()) {
1161 AliError(Form("the following detectors were not found: %s",
1162 detStr.Data()));
1163 if (fStopOnError) return kFALSE;
1164 }
0f88822a 1165 eventNr++;
b26c3770 1166 return kTRUE;
1167}
1168
596a855f 1169//_____________________________________________________________________________
af885e0f 1170Bool_t AliReconstruction::RunVertexFinder(AliESDEvent*& esd)
596a855f 1171{
1172// run the barrel tracking
1173
87932dab 1174 AliCodeTimerAuto("")
030b532d 1175
2257f27e 1176 AliESDVertex* vertex = NULL;
1177 Double_t vtxPos[3] = {0, 0, 0};
1178 Double_t vtxErr[3] = {0.07, 0.07, 0.1};
1179 TArrayF mcVertex(3);
a6b0b91b 1180 if (fRunLoader->GetHeader() && fRunLoader->GetHeader()->GenEventHeader()) {
1181 fRunLoader->GetHeader()->GenEventHeader()->PrimaryVertex(mcVertex);
1182 for (Int_t i = 0; i < 3; i++) vtxPos[i] = mcVertex[i];
1183 }
2257f27e 1184
b8cd5251 1185 if (fVertexer) {
17c86e90 1186 if(fDiamondProfile) fVertexer->SetVtxStart(fDiamondProfile);
815c2b38 1187 AliInfo("running the ITS vertex finder");
b26c3770 1188 if (fLoader[0]) fLoader[0]->LoadRecPoints();
b8cd5251 1189 vertex = fVertexer->FindVertexForCurrentEvent(fRunLoader->GetEventNumber());
b26c3770 1190 if (fLoader[0]) fLoader[0]->UnloadRecPoints();
2257f27e 1191 if(!vertex){
815c2b38 1192 AliWarning("Vertex not found");
c710f220 1193 vertex = new AliESDVertex();
d1a50cb5 1194 vertex->SetName("default");
2257f27e 1195 }
1196 else {
d1a50cb5 1197 vertex->SetName("reconstructed");
2257f27e 1198 }
1199
1200 } else {
815c2b38 1201 AliInfo("getting the primary vertex from MC");
2257f27e 1202 vertex = new AliESDVertex(vtxPos, vtxErr);
1203 }
1204
1205 if (vertex) {
1206 vertex->GetXYZ(vtxPos);
1207 vertex->GetSigmaXYZ(vtxErr);
1208 } else {
815c2b38 1209 AliWarning("no vertex reconstructed");
2257f27e 1210 vertex = new AliESDVertex(vtxPos, vtxErr);
1211 }
1212 esd->SetVertex(vertex);
32e449be 1213 // if SPD multiplicity has been determined, it is stored in the ESD
25be1e5c 1214 AliMultiplicity *mult = fVertexer->GetMultiplicity();
32e449be 1215 if(mult)esd->SetMultiplicity(mult);
1216
b8cd5251 1217 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1218 if (fTracker[iDet]) fTracker[iDet]->SetVertex(vtxPos, vtxErr);
1219 }
2257f27e 1220 delete vertex;
1221
2257f27e 1222 return kTRUE;
1223}
1224
1f46a9ae 1225//_____________________________________________________________________________
af885e0f 1226Bool_t AliReconstruction::RunHLTTracking(AliESDEvent*& esd)
1f46a9ae 1227{
1228// run the HLT barrel tracking
1229
87932dab 1230 AliCodeTimerAuto("")
1f46a9ae 1231
1232 if (!fRunLoader) {
1233 AliError("Missing runLoader!");
1234 return kFALSE;
1235 }
1236
1237 AliInfo("running HLT tracking");
1238
1239 // Get a pointer to the HLT reconstructor
1240 AliReconstructor *reconstructor = GetReconstructor(fgkNDetectors-1);
1241 if (!reconstructor) return kFALSE;
1242
1243 // TPC + ITS
1244 for (Int_t iDet = 1; iDet >= 0; iDet--) {
1245 TString detName = fgkDetectorName[iDet];
1246 AliDebug(1, Form("%s HLT tracking", detName.Data()));
1247 reconstructor->SetOption(detName.Data());
d76c31f4 1248 AliTracker *tracker = reconstructor->CreateTracker();
1f46a9ae 1249 if (!tracker) {
1250 AliWarning(Form("couldn't create a HLT tracker for %s", detName.Data()));
1251 if (fStopOnError) return kFALSE;
9dcc06e1 1252 continue;
1f46a9ae 1253 }
1254 Double_t vtxPos[3];
1255 Double_t vtxErr[3]={0.005,0.005,0.010};
1256 const AliESDVertex *vertex = esd->GetVertex();
1257 vertex->GetXYZ(vtxPos);
1258 tracker->SetVertex(vtxPos,vtxErr);
1259 if(iDet != 1) {
1260 fLoader[iDet]->LoadRecPoints("read");
1261 TTree* tree = fLoader[iDet]->TreeR();
1262 if (!tree) {
1263 AliError(Form("Can't get the %s cluster tree", detName.Data()));
1264 return kFALSE;
1265 }
1266 tracker->LoadClusters(tree);
1267 }
1268 if (tracker->Clusters2Tracks(esd) != 0) {
1269 AliError(Form("HLT %s Clusters2Tracks failed", fgkDetectorName[iDet]));
1270 return kFALSE;
1271 }
1272 if(iDet != 1) {
1273 tracker->UnloadClusters();
1274 }
1275 delete tracker;
1276 }
1277
1f46a9ae 1278 return kTRUE;
1279}
1280
e66fbafb 1281//_____________________________________________________________________________
af885e0f 1282Bool_t AliReconstruction::RunMuonTracking(AliESDEvent*& esd)
e66fbafb 1283{
1284// run the muon spectrometer tracking
1285
87932dab 1286 AliCodeTimerAuto("")
e66fbafb 1287
1288 if (!fRunLoader) {
1289 AliError("Missing runLoader!");
1290 return kFALSE;
1291 }
1292 Int_t iDet = 7; // for MUON
1293
1294 AliInfo("is running...");
1295
1296 // Get a pointer to the MUON reconstructor
1297 AliReconstructor *reconstructor = GetReconstructor(iDet);
1298 if (!reconstructor) return kFALSE;
1299
1300
1301 TString detName = fgkDetectorName[iDet];
1302 AliDebug(1, Form("%s tracking", detName.Data()));
d76c31f4 1303 AliTracker *tracker = reconstructor->CreateTracker();
e66fbafb 1304 if (!tracker) {
1305 AliWarning(Form("couldn't create a tracker for %s", detName.Data()));
1306 return kFALSE;
1307 }
1308
e66fbafb 1309 // read RecPoints
761350a6 1310 fLoader[iDet]->LoadRecPoints("read");
c1954ee5 1311
761350a6 1312 tracker->LoadClusters(fLoader[iDet]->TreeR());
1313
1314 Int_t rv = tracker->Clusters2Tracks(esd);
1315
761350a6 1316 if ( rv )
1317 {
e66fbafb 1318 AliError(Form("%s Clusters2Tracks failed", fgkDetectorName[iDet]));
1319 return kFALSE;
1320 }
761350a6 1321
e66fbafb 1322 fLoader[iDet]->UnloadRecPoints();
1323
c1954ee5 1324 tracker->UnloadClusters();
1325
e66fbafb 1326 delete tracker;
1327
e66fbafb 1328 return kTRUE;
1329}
1330
1331
2257f27e 1332//_____________________________________________________________________________
af885e0f 1333Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
2257f27e 1334{
1335// run the barrel tracking
0f88822a 1336 static Int_t eventNr=0;
87932dab 1337 AliCodeTimerAuto("")
24f7a148 1338
815c2b38 1339 AliInfo("running tracking");
596a855f 1340
91b876d1 1341 //Fill the ESD with the T0 info (will be used by the TOF)
d76c31f4 1342 if (fReconstructor[11] && fLoader[11]) {
1343 fLoader[11]->LoadRecPoints("READ");
1344 TTree *treeR = fLoader[11]->TreeR();
1345 GetReconstructor(11)->FillESD((TTree *)NULL,treeR,esd);
1346 }
91b876d1 1347
b8cd5251 1348 // pass 1: TPC + ITS inwards
1349 for (Int_t iDet = 1; iDet >= 0; iDet--) {
1350 if (!fTracker[iDet]) continue;
1351 AliDebug(1, Form("%s tracking", fgkDetectorName[iDet]));
24f7a148 1352
b8cd5251 1353 // load clusters
1354 fLoader[iDet]->LoadRecPoints("read");
6efecea1 1355 AliSysInfo::AddStamp(Form("RLoadCluster%s_%d",fgkDetectorName[iDet],eventNr),iDet,1, eventNr);
b8cd5251 1356 TTree* tree = fLoader[iDet]->TreeR();
1357 if (!tree) {
1358 AliError(Form("Can't get the %s cluster tree", fgkDetectorName[iDet]));
24f7a148 1359 return kFALSE;
1360 }
b8cd5251 1361 fTracker[iDet]->LoadClusters(tree);
6efecea1 1362 AliSysInfo::AddStamp(Form("TLoadCluster%s_%d",fgkDetectorName[iDet],eventNr), iDet,2, eventNr);
b8cd5251 1363 // run tracking
1364 if (fTracker[iDet]->Clusters2Tracks(esd) != 0) {
1365 AliError(Form("%s Clusters2Tracks failed", fgkDetectorName[iDet]));
24f7a148 1366 return kFALSE;
1367 }
b8cd5251 1368 if (fCheckPointLevel > 1) {
1369 WriteESD(esd, Form("%s.tracking", fgkDetectorName[iDet]));
1370 }
878e1fe1 1371 // preliminary PID in TPC needed by the ITS tracker
1372 if (iDet == 1) {
b26c3770 1373 GetReconstructor(1)->FillESD((TTree*)NULL, (TTree*)NULL, esd);
878e1fe1 1374 AliESDpid::MakePID(esd);
0f88822a 1375 }
6efecea1 1376 AliSysInfo::AddStamp(Form("Tracking0%s_%d",fgkDetectorName[iDet],eventNr), iDet,3,eventNr);
b8cd5251 1377 }
596a855f 1378
b8cd5251 1379 // pass 2: ALL backwards
1380 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1381 if (!fTracker[iDet]) continue;
1382 AliDebug(1, Form("%s back propagation", fgkDetectorName[iDet]));
1383
1384 // load clusters
1385 if (iDet > 1) { // all except ITS, TPC
1386 TTree* tree = NULL;
7b61cd9c 1387 fLoader[iDet]->LoadRecPoints("read");
6efecea1 1388 AliSysInfo::AddStamp(Form("RLoadCluster0%s_%d",fgkDetectorName[iDet],eventNr), iDet,1, eventNr);
7b61cd9c 1389 tree = fLoader[iDet]->TreeR();
b8cd5251 1390 if (!tree) {
1391 AliError(Form("Can't get the %s cluster tree", fgkDetectorName[iDet]));
24f7a148 1392 return kFALSE;
1393 }
0f88822a 1394 fTracker[iDet]->LoadClusters(tree);
6efecea1 1395 AliSysInfo::AddStamp(Form("TLoadCluster0%s_%d",fgkDetectorName[iDet],eventNr), iDet,2, eventNr);
b8cd5251 1396 }
24f7a148 1397
b8cd5251 1398 // run tracking
1399 if (fTracker[iDet]->PropagateBack(esd) != 0) {
1400 AliError(Form("%s backward propagation failed", fgkDetectorName[iDet]));
49dfd67a 1401 // return kFALSE;
b8cd5251 1402 }
1403 if (fCheckPointLevel > 1) {
1404 WriteESD(esd, Form("%s.back", fgkDetectorName[iDet]));
1405 }
24f7a148 1406
b8cd5251 1407 // unload clusters
1408 if (iDet > 2) { // all except ITS, TPC, TRD
1409 fTracker[iDet]->UnloadClusters();
7b61cd9c 1410 fLoader[iDet]->UnloadRecPoints();
b8cd5251 1411 }
8f37df88 1412 // updated PID in TPC needed by the ITS tracker -MI
1413 if (iDet == 1) {
8f37df88 1414 GetReconstructor(1)->FillESD((TTree*)NULL, (TTree*)NULL, esd);
1415 AliESDpid::MakePID(esd);
1416 }
6efecea1 1417 AliSysInfo::AddStamp(Form("Tracking1%s_%d",fgkDetectorName[iDet],eventNr), iDet,3, eventNr);
b8cd5251 1418 }
596a855f 1419
98937d93 1420 // write space-points to the ESD in case alignment data output
1421 // is switched on
1422 if (fWriteAlignmentData)
1423 WriteAlignmentData(esd);
1424
b8cd5251 1425 // pass 3: TRD + TPC + ITS refit inwards
1426 for (Int_t iDet = 2; iDet >= 0; iDet--) {
1427 if (!fTracker[iDet]) continue;
1428 AliDebug(1, Form("%s inward refit", fgkDetectorName[iDet]));
596a855f 1429
b8cd5251 1430 // run tracking
1431 if (fTracker[iDet]->RefitInward(esd) != 0) {
1432 AliError(Form("%s inward refit failed", fgkDetectorName[iDet]));
49dfd67a 1433 // return kFALSE;
b8cd5251 1434 }
1435 if (fCheckPointLevel > 1) {
1436 WriteESD(esd, Form("%s.refit", fgkDetectorName[iDet]));
1437 }
6efecea1 1438 AliSysInfo::AddStamp(Form("Tracking2%s_%d",fgkDetectorName[iDet],eventNr), iDet,3, eventNr);
b8cd5251 1439 // unload clusters
1440 fTracker[iDet]->UnloadClusters();
6efecea1 1441 AliSysInfo::AddStamp(Form("TUnloadCluster%s_%d",fgkDetectorName[iDet],eventNr), iDet,4, eventNr);
b8cd5251 1442 fLoader[iDet]->UnloadRecPoints();
6efecea1 1443 AliSysInfo::AddStamp(Form("RUnloadCluster%s_%d",fgkDetectorName[iDet],eventNr), iDet,5, eventNr);
b8cd5251 1444 }
ff8bb5ae 1445 //
1446 // Propagate track to the vertex - if not done by ITS
1447 //
1448 Int_t ntracks = esd->GetNumberOfTracks();
1449 for (Int_t itrack=0; itrack<ntracks; itrack++){
1450 const Double_t kRadius = 3; // beam pipe radius
1451 const Double_t kMaxStep = 5; // max step
1452 const Double_t kMaxD = 123456; // max distance to prim vertex
1453 Double_t fieldZ = AliTracker::GetBz(); //
1454 AliESDtrack * track = esd->GetTrack(itrack);
1455 if (!track) continue;
1456 if (track->IsOn(AliESDtrack::kITSrefit)) continue;
a7265806 1457 AliTracker::PropagateTrackTo(track,kRadius,track->GetMass(),kMaxStep,kTRUE);
ff8bb5ae 1458 track->RelateToVertex(esd->GetVertex(),fieldZ, kMaxD);
1459 }
0f88822a 1460 eventNr++;
596a855f 1461 return kTRUE;
1462}
1463
d64bd07d 1464//_____________________________________________________________________________
1465Bool_t AliReconstruction::CleanESD(AliESDEvent *esd){
1466 //
1467 // Remove the data which are not needed for the physics analysis.
1468 //
1469
d64bd07d 1470 Int_t nTracks=esd->GetNumberOfTracks();
18571674 1471 Int_t nV0s=esd->GetNumberOfV0s();
cf37fd88 1472 AliInfo
1473 (Form("Number of ESD tracks and V0s before cleaning: %d %d",nTracks,nV0s));
d64bd07d 1474
18571674 1475 Float_t cleanPars[]={fV0DCAmax,fV0CsPmin,fDmax,fZmax};
7f68891d 1476 Bool_t rc=esd->Clean(cleanPars);
d64bd07d 1477
7f68891d 1478 nTracks=esd->GetNumberOfTracks();
18571674 1479 nV0s=esd->GetNumberOfV0s();
cf37fd88 1480 AliInfo
1481 (Form("Number of ESD tracks and V0s after cleaning %d",nTracks,nV0s));
d64bd07d 1482
7f68891d 1483 return rc;
d64bd07d 1484}
1485
596a855f 1486//_____________________________________________________________________________
af885e0f 1487Bool_t AliReconstruction::FillESD(AliESDEvent*& esd, const TString& detectors)
596a855f 1488{
1489// fill the event summary data
1490
87932dab 1491 AliCodeTimerAuto("")
0f88822a 1492 static Int_t eventNr=0;
596a855f 1493 TString detStr = detectors;
abe0c04e 1494
b8cd5251 1495 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
abe0c04e 1496 if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
b8cd5251 1497 AliReconstructor* reconstructor = GetReconstructor(iDet);
1498 if (!reconstructor) continue;
b8cd5251 1499 if (!ReadESD(esd, fgkDetectorName[iDet])) {
1500 AliDebug(1, Form("filling ESD for %s", fgkDetectorName[iDet]));
b26c3770 1501 TTree* clustersTree = NULL;
d76c31f4 1502 if (fLoader[iDet]) {
b26c3770 1503 fLoader[iDet]->LoadRecPoints("read");
1504 clustersTree = fLoader[iDet]->TreeR();
1505 if (!clustersTree) {
1506 AliError(Form("Can't get the %s clusters tree",
1507 fgkDetectorName[iDet]));
1508 if (fStopOnError) return kFALSE;
1509 }
1510 }
1511 if (fRawReader && !reconstructor->HasDigitConversion()) {
1512 reconstructor->FillESD(fRawReader, clustersTree, esd);
1513 } else {
1514 TTree* digitsTree = NULL;
1515 if (fLoader[iDet]) {
1516 fLoader[iDet]->LoadDigits("read");
1517 digitsTree = fLoader[iDet]->TreeD();
1518 if (!digitsTree) {
1519 AliError(Form("Can't get the %s digits tree",
1520 fgkDetectorName[iDet]));
1521 if (fStopOnError) return kFALSE;
1522 }
1523 }
1524 reconstructor->FillESD(digitsTree, clustersTree, esd);
1525 if (fLoader[iDet]) fLoader[iDet]->UnloadDigits();
1526 }
d76c31f4 1527 if (fLoader[iDet]) {
b26c3770 1528 fLoader[iDet]->UnloadRecPoints();
1529 }
1530
b8cd5251 1531 if (fCheckPointLevel > 2) WriteESD(esd, fgkDetectorName[iDet]);
596a855f 1532 }
1533 }
1534
1535 if ((detStr.CompareTo("ALL") != 0) && !detStr.IsNull()) {
815c2b38 1536 AliError(Form("the following detectors were not found: %s",
1537 detStr.Data()));
596a855f 1538 if (fStopOnError) return kFALSE;
1539 }
6efecea1 1540 AliSysInfo::AddStamp(Form("FillESD%d",eventNr), 0,1, eventNr);
0f88822a 1541 eventNr++;
596a855f 1542 return kTRUE;
1543}
1544
b647652d 1545//_____________________________________________________________________________
af885e0f 1546Bool_t AliReconstruction::FillTriggerESD(AliESDEvent*& esd)
b647652d 1547{
1548 // Reads the trigger decision which is
1549 // stored in Trigger.root file and fills
1550 // the corresponding esd entries
1551
87932dab 1552 AliCodeTimerAuto("")
1553
b647652d 1554 AliInfo("Filling trigger information into the ESD");
1555
1556 if (fRawReader) {
1557 AliCTPRawStream input(fRawReader);
1558 if (!input.Next()) {
1559 AliError("No valid CTP (trigger) DDL raw data is found ! The trigger information is not stored in the ESD !");
1560 return kFALSE;
1561 }
1562 esd->SetTriggerMask(input.GetClassMask());
1563 esd->SetTriggerCluster(input.GetClusterMask());
1564 }
1565 else {
1566 AliRunLoader *runloader = AliRunLoader::GetRunLoader();
1567 if (runloader) {
1568 if (!runloader->LoadTrigger()) {
1569 AliCentralTrigger *aCTP = runloader->GetTrigger();
1570 esd->SetTriggerMask(aCTP->GetClassMask());
1571 esd->SetTriggerCluster(aCTP->GetClusterMask());
1572 }
1573 else {
1574 AliWarning("No trigger can be loaded! The trigger information is not stored in the ESD !");
1575 return kFALSE;
1576 }
1577 }
1578 else {
1579 AliError("No run loader is available! The trigger information is not stored in the ESD !");
1580 return kFALSE;
1581 }
1582 }
1583
1584 return kTRUE;
1585}
596a855f 1586
001397cd 1587
1588
1589
1590
1591//_____________________________________________________________________________
af885e0f 1592Bool_t AliReconstruction::FillRawEventHeaderESD(AliESDEvent*& esd)
001397cd 1593{
1594 //
1595 // Filling information from RawReader Header
1596 //
1597
1598 AliInfo("Filling information from RawReader Header");
31fd97b2 1599 esd->SetBunchCrossNumber(0);
1600 esd->SetOrbitNumber(0);
9bcc1e45 1601 esd->SetPeriodNumber(0);
001397cd 1602 esd->SetTimeStamp(0);
1603 esd->SetEventType(0);
1604 const AliRawEventHeaderBase * eventHeader = fRawReader->GetEventHeader();
1605 if (eventHeader){
9bcc1e45 1606
1607 const UInt_t *id = eventHeader->GetP("Id");
1608 esd->SetBunchCrossNumber((id)[1]&0x00000fff);
1609 esd->SetOrbitNumber((((id)[0]<<20)&0xf00000)|(((id)[1]>>12)&0xfffff));
1610 esd->SetPeriodNumber(((id)[0]>>4)&0x0fffffff);
1611
001397cd 1612 esd->SetTimeStamp((eventHeader->Get("Timestamp")));
31fd97b2 1613 esd->SetEventType((eventHeader->Get("Type")));
001397cd 1614 }
1615
1616 return kTRUE;
1617}
1618
1619
596a855f 1620//_____________________________________________________________________________
1621Bool_t AliReconstruction::IsSelected(TString detName, TString& detectors) const
1622{
1623// check whether detName is contained in detectors
1624// if yes, it is removed from detectors
1625
1626 // check if all detectors are selected
1627 if ((detectors.CompareTo("ALL") == 0) ||
1628 detectors.BeginsWith("ALL ") ||
1629 detectors.EndsWith(" ALL") ||
1630 detectors.Contains(" ALL ")) {
1631 detectors = "ALL";
1632 return kTRUE;
1633 }
1634
1635 // search for the given detector
1636 Bool_t result = kFALSE;
1637 if ((detectors.CompareTo(detName) == 0) ||
1638 detectors.BeginsWith(detName+" ") ||
1639 detectors.EndsWith(" "+detName) ||
1640 detectors.Contains(" "+detName+" ")) {
1641 detectors.ReplaceAll(detName, "");
1642 result = kTRUE;
1643 }
1644
1645 // clean up the detectors string
1646 while (detectors.Contains(" ")) detectors.ReplaceAll(" ", " ");
1647 while (detectors.BeginsWith(" ")) detectors.Remove(0, 1);
1648 while (detectors.EndsWith(" ")) detectors.Remove(detectors.Length()-1, 1);
1649
1650 return result;
1651}
e583c30d 1652
f08fc9f5 1653//_____________________________________________________________________________
1654Bool_t AliReconstruction::InitRunLoader()
1655{
1656// get or create the run loader
1657
1658 if (gAlice) delete gAlice;
1659 gAlice = NULL;
1660
b26c3770 1661 if (!gSystem->AccessPathName(fGAliceFileName.Data())) { // galice.root exists
1662 // load all base libraries to get the loader classes
1663 TString libs = gSystem->GetLibraries();
1664 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1665 TString detName = fgkDetectorName[iDet];
1666 if (detName == "HLT") continue;
1667 if (libs.Contains("lib" + detName + "base.so")) continue;
1668 gSystem->Load("lib" + detName + "base.so");
1669 }
f08fc9f5 1670 fRunLoader = AliRunLoader::Open(fGAliceFileName.Data());
1671 if (!fRunLoader) {
1672 AliError(Form("no run loader found in file %s", fGAliceFileName.Data()));
1673 CleanUp();
1674 return kFALSE;
1675 }
b26c3770 1676 fRunLoader->CdGAFile();
1677 if (gFile->GetKey(AliRunLoader::GetGAliceName())) {
1678 if (fRunLoader->LoadgAlice() == 0) {
1679 gAlice = fRunLoader->GetAliRun();
c84a5e9e 1680 AliTracker::SetFieldMap(gAlice->Field(),fUniformField);
b26c3770 1681 }
f08fc9f5 1682 }
1683 if (!gAlice && !fRawReader) {
1684 AliError(Form("no gAlice object found in file %s",
1685 fGAliceFileName.Data()));
1686 CleanUp();
1687 return kFALSE;
1688 }
1689
6cae184e 1690 //PH This is a temporary fix to give access to the kinematics
1691 //PH that is needed for the labels of ITS clusters
f2ee4290 1692 fRunLoader->LoadHeader();
6cae184e 1693 fRunLoader->LoadKinematics();
1694
f08fc9f5 1695 } else { // galice.root does not exist
1696 if (!fRawReader) {
1697 AliError(Form("the file %s does not exist", fGAliceFileName.Data()));
1698 CleanUp();
1699 return kFALSE;
1700 }
1701 fRunLoader = AliRunLoader::Open(fGAliceFileName.Data(),
1702 AliConfig::GetDefaultEventFolderName(),
1703 "recreate");
1704 if (!fRunLoader) {
1705 AliError(Form("could not create run loader in file %s",
1706 fGAliceFileName.Data()));
1707 CleanUp();
1708 return kFALSE;
1709 }
1710 fRunLoader->MakeTree("E");
1711 Int_t iEvent = 0;
1712 while (fRawReader->NextEvent()) {
1713 fRunLoader->SetEventNumber(iEvent);
1714 fRunLoader->GetHeader()->Reset(fRawReader->GetRunNumber(),
1715 iEvent, iEvent);
1716 fRunLoader->MakeTree("H");
1717 fRunLoader->TreeE()->Fill();
1718 iEvent++;
1719 }
1720 fRawReader->RewindEvents();
973388c2 1721 if (fNumberOfEventsPerFile > 0)
1722 fRunLoader->SetNumberOfEventsPerFile(fNumberOfEventsPerFile);
1723 else
1724 fRunLoader->SetNumberOfEventsPerFile(iEvent);
f08fc9f5 1725 fRunLoader->WriteHeader("OVERWRITE");
1726 fRunLoader->CdGAFile();
1727 fRunLoader->Write(0, TObject::kOverwrite);
1728// AliTracker::SetFieldMap(???);
1729 }
1730
1731 return kTRUE;
1732}
1733
c757bafd 1734//_____________________________________________________________________________
b8cd5251 1735AliReconstructor* AliReconstruction::GetReconstructor(Int_t iDet)
c757bafd 1736{
f08fc9f5 1737// get the reconstructor object and the loader for a detector
c757bafd 1738
b8cd5251 1739 if (fReconstructor[iDet]) return fReconstructor[iDet];
1740
1741 // load the reconstructor object
1742 TPluginManager* pluginManager = gROOT->GetPluginManager();
1743 TString detName = fgkDetectorName[iDet];
1744 TString recName = "Ali" + detName + "Reconstructor";
f08fc9f5 1745 if (gAlice && !gAlice->GetDetector(detName) && (detName != "HLT")) return NULL;
b8cd5251 1746
b8cd5251 1747 AliReconstructor* reconstructor = NULL;
1748 // first check if a plugin is defined for the reconstructor
1749 TPluginHandler* pluginHandler =
1750 pluginManager->FindHandler("AliReconstructor", detName);
f08fc9f5 1751 // if not, add a plugin for it
1752 if (!pluginHandler) {
b8cd5251 1753 AliDebug(1, Form("defining plugin for %s", recName.Data()));
b26c3770 1754 TString libs = gSystem->GetLibraries();
1755 if (libs.Contains("lib" + detName + "base.so") ||
1756 (gSystem->Load("lib" + detName + "base.so") >= 0)) {
b8cd5251 1757 pluginManager->AddHandler("AliReconstructor", detName,
1758 recName, detName + "rec", recName + "()");
1759 } else {
1760 pluginManager->AddHandler("AliReconstructor", detName,
1761 recName, detName, recName + "()");
c757bafd 1762 }
b8cd5251 1763 pluginHandler = pluginManager->FindHandler("AliReconstructor", detName);
1764 }
1765 if (pluginHandler && (pluginHandler->LoadPlugin() == 0)) {
1766 reconstructor = (AliReconstructor*) pluginHandler->ExecPlugin(0);
c757bafd 1767 }
b8cd5251 1768 if (reconstructor) {
1769 TObject* obj = fOptions.FindObject(detName.Data());
1770 if (obj) reconstructor->SetOption(obj->GetTitle());
d76c31f4 1771 reconstructor->Init();
b8cd5251 1772 fReconstructor[iDet] = reconstructor;
1773 }
1774
f08fc9f5 1775 // get or create the loader
1776 if (detName != "HLT") {
1777 fLoader[iDet] = fRunLoader->GetLoader(detName + "Loader");
1778 if (!fLoader[iDet]) {
1779 AliConfig::Instance()
1780 ->CreateDetectorFolders(fRunLoader->GetEventFolder(),
1781 detName, detName);
1782 // first check if a plugin is defined for the loader
bb0901a4 1783 pluginHandler =
f08fc9f5 1784 pluginManager->FindHandler("AliLoader", detName);
1785 // if not, add a plugin for it
1786 if (!pluginHandler) {
1787 TString loaderName = "Ali" + detName + "Loader";
1788 AliDebug(1, Form("defining plugin for %s", loaderName.Data()));
1789 pluginManager->AddHandler("AliLoader", detName,
1790 loaderName, detName + "base",
1791 loaderName + "(const char*, TFolder*)");
1792 pluginHandler = pluginManager->FindHandler("AliLoader", detName);
1793 }
1794 if (pluginHandler && (pluginHandler->LoadPlugin() == 0)) {
1795 fLoader[iDet] =
1796 (AliLoader*) pluginHandler->ExecPlugin(2, detName.Data(),
1797 fRunLoader->GetEventFolder());
1798 }
1799 if (!fLoader[iDet]) { // use default loader
1800 fLoader[iDet] = new AliLoader(detName, fRunLoader->GetEventFolder());
1801 }
1802 if (!fLoader[iDet]) {
1803 AliWarning(Form("couldn't get loader for %s", detName.Data()));
6667b602 1804 if (fStopOnError) return NULL;
f08fc9f5 1805 } else {
1806 fRunLoader->AddLoader(fLoader[iDet]);
1807 fRunLoader->CdGAFile();
1808 if (gFile && !gFile->IsWritable()) gFile->ReOpen("UPDATE");
1809 fRunLoader->Write(0, TObject::kOverwrite);
1810 }
1811 }
1812 }
1813
b8cd5251 1814 return reconstructor;
c757bafd 1815}
1816
2257f27e 1817//_____________________________________________________________________________
1818Bool_t AliReconstruction::CreateVertexer()
1819{
1820// create the vertexer
1821
b8cd5251 1822 fVertexer = NULL;
1823 AliReconstructor* itsReconstructor = GetReconstructor(0);
59697224 1824 if (itsReconstructor) {
d76c31f4 1825 fVertexer = itsReconstructor->CreateVertexer();
2257f27e 1826 }
b8cd5251 1827 if (!fVertexer) {
815c2b38 1828 AliWarning("couldn't create a vertexer for ITS");
2257f27e 1829 if (fStopOnError) return kFALSE;
1830 }
1831
1832 return kTRUE;
1833}
1834
24f7a148 1835//_____________________________________________________________________________
b8cd5251 1836Bool_t AliReconstruction::CreateTrackers(const TString& detectors)
24f7a148 1837{
f08fc9f5 1838// create the trackers
24f7a148 1839
b8cd5251 1840 TString detStr = detectors;
1841 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1842 if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
1843 AliReconstructor* reconstructor = GetReconstructor(iDet);
1844 if (!reconstructor) continue;
1845 TString detName = fgkDetectorName[iDet];
1f46a9ae 1846 if (detName == "HLT") {
1847 fRunHLTTracking = kTRUE;
1848 continue;
1849 }
e66fbafb 1850 if (detName == "MUON") {
1851 fRunMuonTracking = kTRUE;
1852 continue;
1853 }
1854
f08fc9f5 1855
d76c31f4 1856 fTracker[iDet] = reconstructor->CreateTracker();
f08fc9f5 1857 if (!fTracker[iDet] && (iDet < 7)) {
1858 AliWarning(Form("couldn't create a tracker for %s", detName.Data()));
8250d5f5 1859 if (fStopOnError) return kFALSE;
1860 }
6efecea1 1861 AliSysInfo::AddStamp(Form("LTracker%s",fgkDetectorName[iDet]), iDet,0);
8250d5f5 1862 }
1863
24f7a148 1864 return kTRUE;
1865}
1866
e583c30d 1867//_____________________________________________________________________________
b26c3770 1868void AliReconstruction::CleanUp(TFile* file, TFile* fileOld)
e583c30d 1869{
1870// delete trackers and the run loader and close and delete the file
1871
b8cd5251 1872 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1873 delete fReconstructor[iDet];
1874 fReconstructor[iDet] = NULL;
1875 fLoader[iDet] = NULL;
1876 delete fTracker[iDet];
1877 fTracker[iDet] = NULL;
c65c502a 1878// delete fQADataMaker[iDet];
1879// fQADataMaker[iDet] = NULL;
b8cd5251 1880 }
1881 delete fVertexer;
1882 fVertexer = NULL;
795e4a22 1883
1884 if(!(AliCDBManager::Instance()->GetCacheFlag())) {
1885 delete fDiamondProfile;
1886 fDiamondProfile = NULL;
1887 }
e583c30d 1888
444753c6 1889 delete fGRPList;
1890 fGRPList = NULL;
1891
e583c30d 1892 delete fRunLoader;
1893 fRunLoader = NULL;
b649205a 1894 delete fRawReader;
1895 fRawReader = NULL;
e583c30d 1896
1897 if (file) {
1898 file->Close();
1899 delete file;
1900 }
b26c3770 1901
1902 if (fileOld) {
1903 fileOld->Close();
1904 delete fileOld;
1905 gSystem->Unlink("AliESDs.old.root");
1906 }
e583c30d 1907}
24f7a148 1908
24f7a148 1909//_____________________________________________________________________________
af885e0f 1910
1911Bool_t AliReconstruction::ReadESD(AliESDEvent*& esd, const char* recStep) const
24f7a148 1912{
1913// read the ESD event from a file
1914
1915 if (!esd) return kFALSE;
1916 char fileName[256];
1917 sprintf(fileName, "ESD_%d.%d_%s.root",
31fd97b2 1918 esd->GetRunNumber(), esd->GetEventNumberInFile(), recStep);
24f7a148 1919 if (gSystem->AccessPathName(fileName)) return kFALSE;
1920
f3a97c86 1921 AliInfo(Form("reading ESD from file %s", fileName));
815c2b38 1922 AliDebug(1, Form("reading ESD from file %s", fileName));
24f7a148 1923 TFile* file = TFile::Open(fileName);
1924 if (!file || !file->IsOpen()) {
815c2b38 1925 AliError(Form("opening %s failed", fileName));
24f7a148 1926 delete file;
1927 return kFALSE;
1928 }
1929
1930 gROOT->cd();
1931 delete esd;
af885e0f 1932 esd = (AliESDEvent*) file->Get("ESD");
24f7a148 1933 file->Close();
1934 delete file;
1935 return kTRUE;
af885e0f 1936
24f7a148 1937}
1938
af885e0f 1939
1940
24f7a148 1941//_____________________________________________________________________________
af885e0f 1942void AliReconstruction::WriteESD(AliESDEvent* esd, const char* recStep) const
24f7a148 1943{
1944// write the ESD event to a file
1945
1946 if (!esd) return;
1947 char fileName[256];
1948 sprintf(fileName, "ESD_%d.%d_%s.root",
31fd97b2 1949 esd->GetRunNumber(), esd->GetEventNumberInFile(), recStep);
24f7a148 1950
815c2b38 1951 AliDebug(1, Form("writing ESD to file %s", fileName));
24f7a148 1952 TFile* file = TFile::Open(fileName, "recreate");
1953 if (!file || !file->IsOpen()) {
815c2b38 1954 AliError(Form("opening %s failed", fileName));
24f7a148 1955 } else {
1956 esd->Write("ESD");
1957 file->Close();
1958 }
1959 delete file;
1960}
f3a97c86 1961
1962
1963
1964
f3a97c86 1965
a7807689 1966//_____________________________________________________________________________
f29f1726 1967void AliReconstruction::ESDFile2AODFile(TFile* esdFile, TFile* aodFile)
a7807689 1968{
f29f1726 1969 // write all files from the given esd file to an aod file
85ba66b8 1970
f29f1726 1971 // create an AliAOD object
1972 AliAODEvent *aod = new AliAODEvent();
1973 aod->CreateStdContent();
1974
1975 // go to the file
1976 aodFile->cd();
1977
1978 // create the tree
b97637d4 1979 TTree *aodTree = new TTree("aodTree", "AliAOD tree");
f29f1726 1980 aodTree->Branch(aod->GetList());
1981
1982 // connect to ESD
1983 TTree *t = (TTree*) esdFile->Get("esdTree");
af885e0f 1984 AliESDEvent *esd = new AliESDEvent();
53ec9628 1985 esd->ReadFromTree(t);
f29f1726 1986
53ec9628 1987 Int_t nEvents = t->GetEntries();
f29f1726 1988
1989 // set arrays and pointers
1990 Float_t posF[3];
1991 Double_t pos[3];
1992 Double_t p[3];
3dd9f9e3 1993 Double_t p_pos[3];
1994 Double_t p_neg[3];
f29f1726 1995 Double_t covVtx[6];
1996 Double_t covTr[21];
1997 Double_t pid[10];
1998
1999 // loop over events and fill them
2000 for (Int_t iEvent = 0; iEvent < nEvents; ++iEvent) {
3dd9f9e3 2001 //cout << "event: " << iEvent << endl;
53ec9628 2002 t->GetEntry(iEvent);
f29f1726 2003
2004 // Multiplicity information needed by the header (to be revised!)
2005 Int_t nTracks = esd->GetNumberOfTracks();
2006 Int_t nPosTracks = 0;
2007 for (Int_t iTrack=0; iTrack<nTracks; ++iTrack)
b97637d4 2008 if (esd->GetTrack(iTrack)->Charge()> 0) nPosTracks++;
f29f1726 2009
85ba66b8 2010 // Access the header
2011 AliAODHeader *header = aod->GetHeader();
2012
2013 // fill the header
ade23daf 2014 header->SetRunNumber (esd->GetRunNumber() );
2015 header->SetBunchCrossNumber(esd->GetBunchCrossNumber());
2016 header->SetOrbitNumber (esd->GetOrbitNumber() );
2017 header->SetPeriodNumber (esd->GetPeriodNumber() );
2018 header->SetTriggerMask (esd->GetTriggerMask() );
2019 header->SetTriggerCluster (esd->GetTriggerCluster() );
2020 header->SetEventType (esd->GetEventType() );
2021 header->SetMagneticField (esd->GetMagneticField() );
2022 header->SetZDCN1Energy (esd->GetZDCN1Energy() );
2023 header->SetZDCP1Energy (esd->GetZDCP1Energy() );
2024 header->SetZDCN2Energy (esd->GetZDCN2Energy() );
2025 header->SetZDCP2Energy (esd->GetZDCP2Energy() );
a85132e7 2026 header->SetZDCEMEnergy (esd->GetZDCEMEnergy(0),esd->GetZDCEMEnergy(1));
a1d4139d 2027 header->SetRefMultiplicity (nTracks);
2028 header->SetRefMultiplicityPos(nPosTracks);
2029 header->SetRefMultiplicityNeg(nTracks - nPosTracks);
2030 header->SetMuonMagFieldScale(-999.); // FIXME
2031 header->SetCentrality(-999.); // FIXME
f29f1726 2032
2033 Int_t nV0s = esd->GetNumberOfV0s();
2034 Int_t nCascades = esd->GetNumberOfCascades();
2035 Int_t nKinks = esd->GetNumberOfKinks();
f747912b 2036 Int_t nVertices = nV0s + 2*nCascades /*could lead to two vertices, one V0 and the Xi */+ nKinks + 1 /* = prim. vtx*/;
2037 Int_t nJets = 0;
3dd9f9e3 2038 Int_t nCaloClus = esd->GetNumberOfCaloClusters();
2039 Int_t nFmdClus = 0;
2040 Int_t nPmdClus = esd->GetNumberOfPmdTracks();
2041
2042 aod->ResetStd(nTracks, nVertices, nV0s+nCascades, nJets, nCaloClus, nFmdClus, nPmdClus);
f29f1726 2043
f29f1726 2044 // Array to take into account the tracks already added to the AOD
2045 Bool_t * usedTrack = NULL;
2046 if (nTracks>0) {
2047 usedTrack = new Bool_t[nTracks];
2048 for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) usedTrack[iTrack]=kFALSE;
2049 }
2050 // Array to take into account the V0s already added to the AOD
2051 Bool_t * usedV0 = NULL;
2052 if (nV0s>0) {
2053 usedV0 = new Bool_t[nV0s];
2054 for (Int_t iV0=0; iV0<nV0s; ++iV0) usedV0[iV0]=kFALSE;
2055 }
2056 // Array to take into account the kinks already added to the AOD
2057 Bool_t * usedKink = NULL;
2058 if (nKinks>0) {
2059 usedKink = new Bool_t[nKinks];
2060 for (Int_t iKink=0; iKink<nKinks; ++iKink) usedKink[iKink]=kFALSE;
2061 }
3dd9f9e3 2062
f29f1726 2063 // Access to the AOD container of vertices
2064 TClonesArray &vertices = *(aod->GetVertices());
2065 Int_t jVertices=0;
2066
2067 // Access to the AOD container of tracks
2068 TClonesArray &tracks = *(aod->GetTracks());
2069 Int_t jTracks=0;
3dd9f9e3 2070
2071 // Access to the AOD container of V0s
2072 TClonesArray &V0s = *(aod->GetV0s());
2073 Int_t jV0s=0;
2074
f29f1726 2075 // Add primary vertex. The primary tracks will be defined
2076 // after the loops on the composite objects (V0, cascades, kinks)
2077 const AliESDVertex *vtx = esd->GetPrimaryVertex();
2078
2079 vtx->GetXYZ(pos); // position
2080 vtx->GetCovMatrix(covVtx); //covariance matrix
2081
2082 AliAODVertex * primary = new(vertices[jVertices++])
02153d58 2083 AliAODVertex(pos, covVtx, vtx->GetChi2toNDF(), NULL, -1, AliAODVertex::kPrimary);
f29f1726 2084
3dd9f9e3 2085
2086 AliAODTrack *aodTrack = 0x0;
2087
f29f1726 2088 // Create vertices starting from the most complex objects
3dd9f9e3 2089
f29f1726 2090 // Cascades
2091 for (Int_t nCascade = 0; nCascade < nCascades; ++nCascade) {
2092 AliESDcascade *cascade = esd->GetCascade(nCascade);
2093
3dd9f9e3 2094 cascade->GetXYZ(pos[0], pos[1], pos[2]);
f29f1726 2095 cascade->GetPosCovXi(covVtx);
2096
2097 // Add the cascade vertex
2098 AliAODVertex * vcascade = new(vertices[jVertices++]) AliAODVertex(pos,
2099 covVtx,
2100 cascade->GetChi2Xi(), // = chi2/NDF since NDF = 2*2-3
2101 primary,
02153d58 2102 nCascade,
f29f1726 2103 AliAODVertex::kCascade);
2104
3dd9f9e3 2105 primary->AddDaughter(vcascade); // the cascade 'particle' (represented by a vertex) is added as a daughter to the primary vertex
f29f1726 2106
2107 // Add the V0 from the cascade. The ESD class have to be optimized...
85ba66b8 2108 // Now we have to search for the corresponding V0 in the list of V0s
f29f1726 2109 // using the indeces of the positive and negative tracks
2110
2111 Int_t posFromV0 = cascade->GetPindex();
2112 Int_t negFromV0 = cascade->GetNindex();
2113
3dd9f9e3 2114
f29f1726 2115 AliESDv0 * v0 = 0x0;
2116 Int_t indV0 = -1;
2117
2118 for (Int_t iV0=0; iV0<nV0s; ++iV0) {
2119
2120 v0 = esd->GetV0(iV0);
2121 Int_t posV0 = v0->GetPindex();
2122 Int_t negV0 = v0->GetNindex();
2123
2124 if (posV0==posFromV0 && negV0==negFromV0) {
2125 indV0 = iV0;
2126 break;
2127 }
2128 }
2129
2130 AliAODVertex * vV0FromCascade = 0x0;
2131
3dd9f9e3 2132 if (indV0>-1 && !usedV0[indV0]) {
f29f1726 2133
2134 // the V0 exists in the array of V0s and is not used
2135
2136 usedV0[indV0] = kTRUE;
2137
2138 v0->GetXYZ(pos[0], pos[1], pos[2]);
2139 v0->GetPosCov(covVtx);
2140
2141 vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
2142 covVtx,
2143 v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
2144 vcascade,
02153d58 2145 indV0,
f29f1726 2146 AliAODVertex::kV0);
2147 } else {
2148
2149 // the V0 doesn't exist in the array of V0s or was used
2150 cerr << "Error: event " << iEvent << " cascade " << nCascade
2151 << " The V0 " << indV0
2152 << " doesn't exist in the array of V0s or was used!" << endl;
2153
2154 cascade->GetXYZ(pos[0], pos[1], pos[2]);
2155 cascade->GetPosCov(covVtx);
2156
2157 vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
2158 covVtx,
2159 v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
2160 vcascade,
02153d58 2161 indV0,
f29f1726 2162 AliAODVertex::kV0);
2163 vcascade->AddDaughter(vV0FromCascade);
3dd9f9e3 2164
f29f1726 2165 }
2166
2167 // Add the positive tracks from the V0
2168
2169 if (! usedTrack[posFromV0]) {
2170
2171 usedTrack[posFromV0] = kTRUE;
2172
2173 AliESDtrack *esdTrack = esd->GetTrack(posFromV0);
3dd9f9e3 2174 esdTrack->GetPxPyPz(p_pos);
f29f1726 2175 esdTrack->GetXYZ(pos);
2176 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2177 esdTrack->GetESDpid(pid);
2178
2179 vV0FromCascade->AddDaughter(aodTrack =
2180 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2181 esdTrack->GetLabel(),
3dd9f9e3 2182 p_pos,
f29f1726 2183 kTRUE,
2184 pos,
2185 kFALSE,
2186 covTr,
b97637d4 2187 (Short_t)esdTrack->Charge(),
f29f1726 2188 esdTrack->GetITSClusterMap(),
2189 pid,
2190 vV0FromCascade,
2191 kTRUE, // check if this is right
2192 kFALSE, // check if this is right
2193 AliAODTrack::kSecondary)
2194 );
2195 aodTrack->ConvertAliPIDtoAODPID();
2196 }
2197 else {
2198 cerr << "Error: event " << iEvent << " cascade " << nCascade
2199 << " track " << posFromV0 << " has already been used!" << endl;
2200 }
2201
2202 // Add the negative tracks from the V0
2203
2204 if (!usedTrack[negFromV0]) {
2205
2206 usedTrack[negFromV0] = kTRUE;
2207
2208 AliESDtrack *esdTrack = esd->GetTrack(negFromV0);
3dd9f9e3 2209 esdTrack->GetPxPyPz(p_neg);
f29f1726 2210 esdTrack->GetXYZ(pos);
2211 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2212 esdTrack->GetESDpid(pid);
2213
2214 vV0FromCascade->AddDaughter(aodTrack =
2215 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2216 esdTrack->GetLabel(),
3dd9f9e3 2217 p_neg,
f29f1726 2218 kTRUE,
2219 pos,
2220 kFALSE,
2221 covTr,
b97637d4 2222 (Short_t)esdTrack->Charge(),
f29f1726 2223 esdTrack->GetITSClusterMap(),
2224 pid,
2225 vV0FromCascade,
2226 kTRUE, // check if this is right
2227 kFALSE, // check if this is right
2228 AliAODTrack::kSecondary)
2229 );
2230 aodTrack->ConvertAliPIDtoAODPID();
2231 }
2232 else {
2233 cerr << "Error: event " << iEvent << " cascade " << nCascade
2234 << " track " << negFromV0 << " has already been used!" << endl;
2235 }
2236
3dd9f9e3 2237 // add it to the V0 array as well
2238 Double_t d0[2] = { -999., -99.};
2239 // counting is probably wrong
2240 new(V0s[jV0s++]) AliAODv0(vV0FromCascade, -999., -99., p_pos, p_neg, d0); // to be refined
2241
f29f1726 2242 // Add the bachelor track from the cascade
2243
2244 Int_t bachelor = cascade->GetBindex();
2245
2246 if(!usedTrack[bachelor]) {
2247
2248 usedTrack[bachelor] = kTRUE;
2249
2250 AliESDtrack *esdTrack = esd->GetTrack(bachelor);
2251 esdTrack->GetPxPyPz(p);
2252 esdTrack->GetXYZ(pos);
2253 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2254 esdTrack->GetESDpid(pid);
2255
2256 vcascade->AddDaughter(aodTrack =
2257 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2258 esdTrack->GetLabel(),
2259 p,
2260 kTRUE,
2261 pos,
2262 kFALSE,
2263 covTr,
b97637d4 2264 (Short_t)esdTrack->Charge(),
f29f1726 2265 esdTrack->GetITSClusterMap(),
2266 pid,
2267 vcascade,
2268 kTRUE, // check if this is right
2269 kFALSE, // check if this is right
2270 AliAODTrack::kSecondary)
2271 );
2272 aodTrack->ConvertAliPIDtoAODPID();
2273 }
2274 else {
2275 cerr << "Error: event " << iEvent << " cascade " << nCascade
2276 << " track " << bachelor << " has already been used!" << endl;
2277 }
3dd9f9e3 2278
f29f1726 2279 // Add the primary track of the cascade (if any)
3dd9f9e3 2280
f29f1726 2281 } // end of the loop on cascades
3dd9f9e3 2282
f29f1726 2283 // V0s
2284
2285 for (Int_t nV0 = 0; nV0 < nV0s; ++nV0) {
2286
2287 if (usedV0[nV0]) continue; // skip if aready added to the AOD
2288
3dd9f9e3 2289 AliESDv0 *v0 = esd->GetV0(nV0);
2290
f29f1726 2291 v0->GetXYZ(pos[0], pos[1], pos[2]);
2292 v0->GetPosCov(covVtx);
2293
2294 AliAODVertex * vV0 =
2295 new(vertices[jVertices++]) AliAODVertex(pos,
2296 covVtx,
2297 v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
2298 primary,
02153d58 2299 nV0,
f29f1726 2300 AliAODVertex::kV0);
2301 primary->AddDaughter(vV0);
2302
2303 Int_t posFromV0 = v0->GetPindex();
2304 Int_t negFromV0 = v0->GetNindex();
2305
2306 // Add the positive tracks from the V0
2307
2308 if (!usedTrack[posFromV0]) {
2309
2310 usedTrack[posFromV0] = kTRUE;
2311
2312 AliESDtrack *esdTrack = esd->GetTrack(posFromV0);
3dd9f9e3 2313 esdTrack->GetPxPyPz(p_pos);
f29f1726 2314 esdTrack->GetXYZ(pos);
2315 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2316 esdTrack->GetESDpid(pid);
2317
2318 vV0->AddDaughter(aodTrack =
2319 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2320 esdTrack->GetLabel(),
3dd9f9e3 2321 p_pos,
f29f1726 2322 kTRUE,
2323 pos,
2324 kFALSE,
2325 covTr,
b97637d4 2326 (Short_t)esdTrack->Charge(),
f29f1726 2327 esdTrack->GetITSClusterMap(),
2328 pid,
2329 vV0,
2330 kTRUE, // check if this is right
2331 kFALSE, // check if this is right
2332 AliAODTrack::kSecondary)
2333 );
2334 aodTrack->ConvertAliPIDtoAODPID();
2335 }
2336 else {
2337 cerr << "Error: event " << iEvent << " V0 " << nV0
2338 << " track " << posFromV0 << " has already been used!" << endl;
2339 }
a7807689 2340
f29f1726 2341 // Add the negative tracks from the V0
2342
2343 if (!usedTrack[negFromV0]) {
2344
2345 usedTrack[negFromV0] = kTRUE;
2346
2347 AliESDtrack *esdTrack = esd->GetTrack(negFromV0);
3dd9f9e3 2348 esdTrack->GetPxPyPz(p_neg);
f29f1726 2349 esdTrack->GetXYZ(pos);
2350 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2351 esdTrack->GetESDpid(pid);
2352
2353 vV0->AddDaughter(aodTrack =
2354 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2355 esdTrack->GetLabel(),
3dd9f9e3 2356 p_neg,
f29f1726 2357 kTRUE,
2358 pos,
2359 kFALSE,
2360 covTr,
b97637d4 2361 (Short_t)esdTrack->Charge(),
f29f1726 2362 esdTrack->GetITSClusterMap(),
2363 pid,
2364 vV0,
2365 kTRUE, // check if this is right
2366 kFALSE, // check if this is right
2367 AliAODTrack::kSecondary)
2368 );
2369 aodTrack->ConvertAliPIDtoAODPID();
2370 }
2371 else {
2372 cerr << "Error: event " << iEvent << " V0 " << nV0
2373 << " track " << negFromV0 << " has already been used!" << endl;
2374 }
2375
3dd9f9e3 2376 // add it to the V0 array as well
2377 Double_t d0[2] = { 999., 99.};
2378 new(V0s[jV0s++]) AliAODv0(vV0, 999., 99., p_pos, p_neg, d0); // to be refined
f747912b 2379 }
2380 V0s.Expand(jV0s);
2381 // end of the loop on V0s
f29f1726 2382
2383 // Kinks: it is a big mess the access to the information in the kinks
2384 // The loop is on the tracks in order to find the mother and daugther of each kink
2385
2386
2387 for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) {
2388
f29f1726 2389 AliESDtrack * esdTrack = esd->GetTrack(iTrack);
2390
2391 Int_t ikink = esdTrack->GetKinkIndex(0);
2392
2393 if (ikink) {
2394 // Negative kink index: mother, positive: daughter
2395
2396 // Search for the second track of the kink
2397
2398 for (Int_t jTrack = iTrack+1; jTrack<nTracks; ++jTrack) {
2399
2400 AliESDtrack * esdTrack1 = esd->GetTrack(jTrack);
2401
2402 Int_t jkink = esdTrack1->GetKinkIndex(0);
2403
2404 if ( TMath::Abs(ikink)==TMath::Abs(jkink) ) {
2405
2406 // The two tracks are from the same kink
2407
2408 if (usedKink[TMath::Abs(ikink)-1]) continue; // skip used kinks
2409
2410 Int_t imother = -1;
2411 Int_t idaughter = -1;
2412
2413 if (ikink<0 && jkink>0) {
2414
2415 imother = iTrack;
2416 idaughter = jTrack;
2417 }
2418 else if (ikink>0 && jkink<0) {
2419
2420 imother = jTrack;
2421 idaughter = iTrack;
2422 }
2423 else {
2424 cerr << "Error: Wrong combination of kink indexes: "
2425 << ikink << " " << jkink << endl;
2426 continue;
2427 }
2428
2429 // Add the mother track
2430
2431 AliAODTrack * mother = NULL;
2432
2433 if (!usedTrack[imother]) {
2434
2435 usedTrack[imother] = kTRUE;
2436
2437 AliESDtrack *esdTrack = esd->GetTrack(imother);
2438 esdTrack->GetPxPyPz(p);
2439 esdTrack->GetXYZ(pos);
2440 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2441 esdTrack->GetESDpid(pid);
2442
2443 mother =
2444 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2445 esdTrack->GetLabel(),
2446 p,
2447 kTRUE,
2448 pos,
2449 kFALSE,
2450 covTr,
b97637d4 2451 (Short_t)esdTrack->Charge(),
f29f1726 2452 esdTrack->GetITSClusterMap(),
2453 pid,
2454 primary,
2455 kTRUE, // check if this is right
2456 kTRUE, // check if this is right
2457 AliAODTrack::kPrimary);
2458 primary->AddDaughter(mother);
2459 mother->ConvertAliPIDtoAODPID();
2460 }
2461 else {
2462 cerr << "Error: event " << iEvent << " kink " << TMath::Abs(ikink)-1
2463 << " track " << imother << " has already been used!" << endl;
2464 }
2465
2466 // Add the kink vertex
2467 AliESDkink * kink = esd->GetKink(TMath::Abs(ikink)-1);
2468
2469 AliAODVertex * vkink =
2470 new(vertices[jVertices++]) AliAODVertex(kink->GetPosition(),
2471 NULL,
2472 0.,
2473 mother,
02153d58 2474 esdTrack->GetID(), // This is the track ID of the mother's track!
f29f1726 2475 AliAODVertex::kKink);
2476 // Add the daughter track
2477
2478 AliAODTrack * daughter = NULL;
2479
2480 if (!usedTrack[idaughter]) {
2481
2482 usedTrack[idaughter] = kTRUE;
2483
2484 AliESDtrack *esdTrack = esd->GetTrack(idaughter);
2485 esdTrack->GetPxPyPz(p);
2486 esdTrack->GetXYZ(pos);
2487 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2488 esdTrack->GetESDpid(pid);
2489
2490 daughter =
2491 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2492 esdTrack->GetLabel(),
2493 p,
2494 kTRUE,
2495 pos,
2496 kFALSE,
2497 covTr,
b97637d4 2498 (Short_t)esdTrack->Charge(),
f29f1726 2499 esdTrack->GetITSClusterMap(),
2500 pid,
2501 vkink,
2502 kTRUE, // check if this is right
2503 kTRUE, // check if this is right
2504 AliAODTrack::kPrimary);
2505 vkink->AddDaughter(daughter);
2506 daughter->ConvertAliPIDtoAODPID();
2507 }
2508 else {
2509 cerr << "Error: event " << iEvent << " kink " << TMath::Abs(ikink)-1
2510 << " track " << idaughter << " has already been used!" << endl;
2511 }
f29f1726 2512 }
2513 }
3dd9f9e3 2514 }
f29f1726 2515 }
f747912b 2516 vertices.Expand(jVertices);
f29f1726 2517
f29f1726 2518 // Tracks (primary and orphan)
f29f1726 2519 for (Int_t nTrack = 0; nTrack < nTracks; ++nTrack) {
f29f1726 2520
2521 if (usedTrack[nTrack]) continue;
2522
2523 AliESDtrack *esdTrack = esd->GetTrack(nTrack);
2524 esdTrack->GetPxPyPz(p);
2525 esdTrack->GetXYZ(pos);
2526 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2527 esdTrack->GetESDpid(pid);
2528
2529 Float_t impactXY, impactZ;
2530
2531 esdTrack->GetImpactParameters(impactXY,impactZ);
2532
3dd9f9e3 2533 if (impactXY<3.) {
f29f1726 2534 // track inside the beam pipe
2535
2536 primary->AddDaughter(aodTrack =
2537 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2538 esdTrack->GetLabel(),
2539 p,
2540 kTRUE,
2541 pos,
2542 kFALSE,
2543 covTr,
b97637d4 2544 (Short_t)esdTrack->Charge(),
f29f1726 2545 esdTrack->GetITSClusterMap(),
2546 pid,
2547 primary,
2548 kTRUE, // check if this is right
2549 kTRUE, // check if this is right
2550 AliAODTrack::kPrimary)
2551 );
2552 aodTrack->ConvertAliPIDtoAODPID();
2553 }
2554 else {
2555 // outside the beam pipe: orphan track
3dd9f9e3 2556 // Don't write them anymore!
2557 continue;
f29f1726 2558 }
2559 } // end of loop on tracks
3dd9f9e3 2560
f29f1726 2561 // muon tracks
2562 Int_t nMuTracks = esd->GetNumberOfMuonTracks();
2563 for (Int_t nMuTrack = 0; nMuTrack < nMuTracks; ++nMuTrack) {
2564
2565 AliESDMuonTrack *esdMuTrack = esd->GetMuonTrack(nMuTrack);
2566 p[0] = esdMuTrack->Px();
2567 p[1] = esdMuTrack->Py();
2568 p[2] = esdMuTrack->Pz();
2569 pos[0] = primary->GetX();
2570 pos[1] = primary->GetY();
2571 pos[2] = primary->GetZ();
2572
2573 // has to be changed once the muon pid is provided by the ESD
2574 for (Int_t i = 0; i < 10; pid[i++] = 0.); pid[AliAODTrack::kMuon]=1.;
2575
85ba66b8 2576 primary->AddDaughter(aodTrack =
f29f1726 2577 new(tracks[jTracks++]) AliAODTrack(0, // no ID provided
2578 0, // no label provided
2579 p,
2580 kTRUE,
2581 pos,
2582 kFALSE,
2583 NULL, // no covariance matrix provided
b97637d4 2584 esdMuTrack->Charge(),
e704c7d4 2585 0, // ITSClusterMap is set below
f29f1726 2586 pid,
2587 primary,
85ba66b8 2588 kFALSE, // muon tracks are not used to fit the primary vtx
2589 kFALSE, // not used for vertex fit
f29f1726 2590 AliAODTrack::kPrimary)
2591 );
85ba66b8 2592
2593 aodTrack->SetHitsPatternInTrigCh(esdMuTrack->GetHitsPatternInTrigCh());
2594 Int_t track2Trigger = esdMuTrack->GetMatchTrigger();
2595 aodTrack->SetMatchTrigger(track2Trigger);
2596 if (track2Trigger)
2597 aodTrack->SetChi2MatchTrigger(esdMuTrack->GetChi2MatchTrigger());
2598 else
2599 aodTrack->SetChi2MatchTrigger(0.);
f29f1726 2600 }
f747912b 2601 tracks.Expand(jTracks); // remove 'empty slots' due to unwritten tracks
2602
3dd9f9e3 2603 // Access to the AOD container of PMD clusters
2604 TClonesArray &pmdClusters = *(aod->GetPmdClusters());
2605 Int_t jPmdClusters=0;
2606
2607 for (Int_t iPmd = 0; iPmd < nPmdClus; ++iPmd) {
2608 // file pmd clusters, to be revised!
2609 AliESDPmdTrack *pmdTrack = esd->GetPmdTrack(iPmd);
2610 Int_t nLabel = 0;
2611 Int_t *label = 0x0;
2612 Double_t pos[3] = { pmdTrack->GetClusterX(), pmdTrack->GetClusterY(), pmdTrack->GetClusterZ() };
2613 Double_t pid[9] = { 0., 0., 0., 0., 0., 0., 0., 0., 0. }; // to be revised!
2614 // type not set!
2615 // assoc cluster not set
2616 new(pmdClusters[jPmdClusters++]) AliAODPmdCluster(iPmd, nLabel, label, pmdTrack->GetClusterADC(), pos, pid);
2617 }
2618
f29f1726 2619 // Access to the AOD container of clusters
3dd9f9e3 2620 TClonesArray &caloClusters = *(aod->GetCaloClusters());
f29f1726 2621 Int_t jClusters=0;
3dd9f9e3 2622
2623 for (Int_t iClust=0; iClust<nCaloClus; ++iClust) {
f29f1726 2624
2625 AliESDCaloCluster * cluster = esd->GetCaloCluster(iClust);
2626
2627 Int_t id = cluster->GetID();
3dd9f9e3 2628 Int_t nLabel = 0;
2629 Int_t *label = 0x0;
53ec9628 2630 Float_t energy = cluster->E();
2631 cluster->GetPosition(posF);
f29f1726 2632 Char_t ttype=AliAODCluster::kUndef;
85ba66b8 2633
3dd9f9e3 2634 if (cluster->GetClusterType() == AliESDCaloCluster::kPHOSCluster) {
2635 ttype=AliAODCluster::kPHOSNeutral;
2636 }
2637 else if (cluster->GetClusterType() == AliESDCaloCluster::kEMCALClusterv1) {
562dd0b4 2638 ttype = AliAODCluster::kEMCALClusterv1;
3dd9f9e3 2639 }
e649177a 2640
3dd9f9e3 2641
2642 AliAODCaloCluster *caloCluster = new(caloClusters[jClusters++]) AliAODCaloCluster(id,
2643 nLabel,
2644 label,
2645 energy,
2646 pos,
2647 NULL,
2648 ttype);
2649
2650 caloCluster->SetCaloCluster(); // to be refined!
85ba66b8 2651
f747912b 2652 }
37792174 2653 caloClusters.Expand(jClusters); // resize TObjArray to 'remove' slots for pseudo clusters
2654 // end of loop on calo clusters
85ba66b8 2655
e649177a 2656 // fill PHOS cell info
2657
2658 AliESDCaloCells &esdEMcells = *(esd->GetEMCALCells());
2659 Int_t nEMcell = esdEMcells.GetNumberOfCells() ;
2660
2661 AliAODCaloCells &aodEMcells = *(aod->GetEMCALCells());
2662 aodEMcells.CreateContainer(nEMcell);
2663 aodEMcells.SetType(AliAODCaloCells::kEMCAL);
2664 for (Int_t iCell = 0; iCell < nEMcell; iCell++) {
2665 aodEMcells.SetCell(iCell,esdEMcells.GetCellNumber(iCell),esdEMcells.GetAmplitude(iCell));
2666 }
2667 aodEMcells.Sort();
2668
2669 // fill PHOS cell info
2670
2671 AliESDCaloCells &esdPHcells = *(esd->GetPHOSCells());
2672 Int_t nPHcell = esdPHcells.GetNumberOfCells() ;
2673
2674 AliAODCaloCells &aodPHcells = *(aod->GetPHOSCells());
2675 aodPHcells.CreateContainer(nPHcell);
2676 aodPHcells.SetType(AliAODCaloCells::kPHOS);
2677 for (Int_t iCell = 0; iCell < nPHcell; iCell++) {
2678 aodPHcells.SetCell(iCell,esdPHcells.GetCellNumber(iCell),esdPHcells.GetAmplitude(iCell));
3dd9f9e3 2679 }
e649177a 2680 aodPHcells.Sort();
3dd9f9e3 2681
2682 // tracklets
2683 AliAODTracklets &SPDTracklets = *(aod->GetTracklets());
85ba66b8 2684 const AliMultiplicity *mult = esd->GetMultiplicity();
2685 if (mult) {
2686 if (mult->GetNumberOfTracklets()>0) {
3dd9f9e3 2687 SPDTracklets.CreateContainer(mult->GetNumberOfTracklets());
85ba66b8 2688
2689 for (Int_t n=0; n<mult->GetNumberOfTracklets(); n++) {
3dd9f9e3 2690 SPDTracklets.SetTracklet(n, mult->GetTheta(n), mult->GetPhi(n), mult->GetDeltaPhi(n), mult->GetLabel(n));
85ba66b8 2691 }
2692 }
2693 } else {
2694 Printf("ERROR: AliMultiplicity could not be retrieved from ESD");
2695 }
2696
f29f1726 2697 delete [] usedTrack;
2698 delete [] usedV0;
2699 delete [] usedKink;
85ba66b8 2700
f29f1726 2701 // fill the tree for this event
2702 aodTree->Fill();
2703 } // end of event loop
85ba66b8 2704
f29f1726 2705 aodTree->GetUserInfo()->Add(aod);
85ba66b8 2706
f29f1726 2707 // write the tree to the specified file
2708 aodFile = aodTree->GetCurrentFile();
2709 aodFile->cd();
2710 aodTree->Write();
85ba66b8 2711
a7807689 2712 return;
2713}
2714
af885e0f 2715void AliReconstruction::WriteAlignmentData(AliESDEvent* esd)
98937d93 2716{
2717 // Write space-points which are then used in the alignment procedures
2718 // For the moment only ITS, TRD and TPC
2719
2720 // Load TOF clusters
d528ee75 2721 if (fTracker[3]){
2722 fLoader[3]->LoadRecPoints("read");
2723 TTree* tree = fLoader[3]->TreeR();
2724 if (!tree) {
2725 AliError(Form("Can't get the %s cluster tree", fgkDetectorName[3]));
2726 return;
2727 }
2728 fTracker[3]->LoadClusters(tree);
98937d93 2729 }
98937d93 2730 Int_t ntracks = esd->GetNumberOfTracks();
2731 for (Int_t itrack = 0; itrack < ntracks; itrack++)
2732 {
2733 AliESDtrack *track = esd->GetTrack(itrack);
2734 Int_t nsp = 0;
ef7253ac 2735 Int_t idx[200];
98937d93 2736 for (Int_t iDet = 3; iDet >= 0; iDet--)
2737 nsp += track->GetNcls(iDet);
2738 if (nsp) {
2739 AliTrackPointArray *sp = new AliTrackPointArray(nsp);
2740 track->SetTrackPointArray(sp);
2741 Int_t isptrack = 0;
2742 for (Int_t iDet = 3; iDet >= 0; iDet--) {
2743 AliTracker *tracker = fTracker[iDet];
2744 if (!tracker) continue;
2745 Int_t nspdet = track->GetNcls(iDet);
98937d93 2746 if (nspdet <= 0) continue;
2747 track->GetClusters(iDet,idx);
2748 AliTrackPoint p;
2749 Int_t isp = 0;
2750 Int_t isp2 = 0;
2751 while (isp < nspdet) {
48ce48d1 2752 Bool_t isvalid;
2753 if(IsSelected(fgkDetectorName[iDet],fUseTrackingErrorsForAlignment)) {
2754 isvalid = tracker->GetTrackPointTrackingError(idx[isp2],p,track);
2755 } else {
2756 isvalid = tracker->GetTrackPoint(idx[isp2],p);
2757 }
2758 isp2++;
160db090 2759 const Int_t kNTPCmax = 159;
2760 if (iDet==1 && isp2>kNTPCmax) break; // to be fixed
98937d93 2761 if (!isvalid) continue;
2762 sp->AddPoint(isptrack,&p); isptrack++; isp++;
2763 }
98937d93 2764 }
2765 }
2766 }
d528ee75 2767 if (fTracker[3]){
2768 fTracker[3]->UnloadClusters();
2769 fLoader[3]->UnloadRecPoints();
2770 }
98937d93 2771}
2e3550da 2772
2773//_____________________________________________________________________________
af885e0f 2774void AliReconstruction::FillRawDataErrorLog(Int_t iEvent, AliESDEvent* esd)
2e3550da 2775{
2776 // The method reads the raw-data error log
2777 // accumulated within the rawReader.
2778 // It extracts the raw-data errors related to
2779 // the current event and stores them into
2780 // a TClonesArray inside the esd object.
2781
2782 if (!fRawReader) return;
2783
2784 for(Int_t i = 0; i < fRawReader->GetNumberOfErrorLogs(); i++) {
2785
2786 AliRawDataErrorLog *log = fRawReader->GetErrorLog(i);
2787 if (!log) continue;
2788 if (iEvent != log->GetEventNumber()) continue;
2789
2790 esd->AddRawDataErrorLog(log);
2791 }
2792
2793}
46698ae4 2794
2795TNamed* AliReconstruction::CopyFileToTNamed(TString fPath,TString fName){
b545009a 2796 // Dump a file content into a char in TNamed
46698ae4 2797 ifstream in;
2798 in.open(fPath.Data(),ios::in | ios::binary|ios::ate);
2799 Int_t kBytes = (Int_t)in.tellg();
2800 printf("Size: %d \n",kBytes);
2801 TNamed *fn = 0;
2802 if(in.good()){
2803 char* memblock = new char [kBytes];
2804 in.seekg (0, ios::beg);
2805 in.read (memblock, kBytes);
2806 in.close();
2807 TString fData(memblock,kBytes);
2808 fn = new TNamed(fName,fData);
2809 printf("fData Size: %d \n",fData.Sizeof());
2810 printf("fName Size: %d \n",fName.Sizeof());
2811 printf("fn Size: %d \n",fn->Sizeof());
2812 delete[] memblock;
2813 }
2814 else{
2815 AliInfo(Form("Could not Open %s\n",fPath.Data()));
2816 }
2817
2818 return fn;
2819}
2820
2821void AliReconstruction::TNamedToFile(TTree* fTree, TString fName){
46698ae4 2822 // This is not really needed in AliReconstruction at the moment
2823 // but can serve as a template
2824
2825 TList *fList = fTree->GetUserInfo();
2826 TNamed *fn = (TNamed*)fList->FindObject(fName.Data());
2827 printf("fn Size: %d \n",fn->Sizeof());
2828
2829 TString fTmp(fn->GetName()); // to be 100% sure in principle fName also works
2830 const char* cdata = fn->GetTitle();
2831 printf("fTmp Size %d\n",fTmp.Sizeof());
2832
2833 int size = fn->Sizeof()-fTmp.Sizeof()-sizeof(UChar_t)-sizeof(Int_t); // see dfinition of TString::SizeOf()...
2834 printf("calculated size %d\n",size);
2835 ofstream out(fName.Data(),ios::out | ios::binary);
2836 out.write(cdata,size);
2837 out.close();
2838
2839}
6efecea1 2840
7e963665 2841//_____________________________________________________________________________
2842AliQADataMaker * AliReconstruction::GetQADataMaker(Int_t iDet)
2843{
2844 // get the quality assurance data maker object and the loader for a detector
6efecea1 2845
7e963665 2846 if (fQADataMaker[iDet])
2847 return fQADataMaker[iDet];
2848
2849 // load the QA data maker object
2850 TPluginManager* pluginManager = gROOT->GetPluginManager();
2851 TString detName = fgkDetectorName[iDet];
2852 TString qadmName = "Ali" + detName + "QADataMaker";
2853 if (gAlice && !gAlice->GetDetector(detName) && (detName != "HLT"))
2854 return NULL;
2855
2856 AliQADataMaker * qadm = NULL;
2857 // first check if a plugin is defined for the quality assurance data maker
2858 TPluginHandler* pluginHandler = pluginManager->FindHandler("AliQADataMaker", detName);
2859 // if not, add a plugin for it
2860 if (!pluginHandler) {
2861 AliDebug(1, Form("defining plugin for %s", qadmName.Data()));
2862 TString libs = gSystem->GetLibraries();
2863 if (libs.Contains("lib" + detName + "base.so") ||
2864 (gSystem->Load("lib" + detName + "base.so") >= 0)) {
2865 pluginManager->AddHandler("AliQADataMaker", detName,
2866 qadmName, detName + "qadm", qadmName + "()");
2867 } else {
2868 pluginManager->AddHandler("AliQADataMaker", detName,
2869 qadmName, detName, qadmName + "()");
2870 }
2871 pluginHandler = pluginManager->FindHandler("AliQADataMaker", detName);
2872 }
2873 if (pluginHandler && (pluginHandler->LoadPlugin() == 0)) {
2874 qadm = (AliQADataMaker *) pluginHandler->ExecPlugin(0);
2875 }
2876 if (qadm) {
2877 AliInfo(Form("Initializing quality assurance data maker for %s", fgkDetectorName[iDet]));
2878 qadm->Init(AliQA::kRECPOINTS, AliCDBManager::Instance()->GetRun(), GetQACycles(fgkDetectorName[iDet]));
2879 qadm->StartOfCycle(AliQA::kRECPOINTS);
2880 qadm->Init(AliQA::kESDS, AliCDBManager::Instance()->GetRun());
2881 qadm->StartOfCycle(AliQA::kESDS, "same") ;
2882 fQADataMaker[iDet] = qadm;
2883 }
2884
2885 return qadm;
2886}
46698ae4 2887
a5fa6165 2888//_____________________________________________________________________________
7e963665 2889Bool_t AliReconstruction::RunQA(const char* detectors, AliESDEvent *& esd)
2890{
2891 // run the Quality Assurance data producer
2892
2893 AliCodeTimerAuto("")
2894 TString detStr = detectors;
2895 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
2896 if (!IsSelected(fgkDetectorName[iDet], detStr))
2897 continue;
2898 AliQADataMaker * qadm = GetQADataMaker(iDet);
2899 if (!qadm)
2900 continue;
2901 AliCodeTimerStart(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
2902 AliInfo(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
2903
2904 qadm->Exec(AliQA::kESDS, esd) ;
2905 qadm->Increment() ;
2906
2907 AliCodeTimerStop(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
2908 }
2909 if ((detStr.CompareTo("ALL") != 0) && !detStr.IsNull()) {
2910 AliError(Form("the following detectors were not found: %s",
2911 detStr.Data()));
2912 if (fStopOnError)
2913 return kFALSE;
2914 }
2915
2916 return kTRUE;
2917
2918}
8661738e 2919
2920//_____________________________________________________________________________
2921void AliReconstruction::CheckQA()
2922{
2923// check the QA of SIM for this run and remove the detectors
2924// with status Fatal
2925
abe0c04e 2926 TString newRunLocalReconstruction ;
2927 TString newRunTracking ;
2928 TString newFillESD ;
2929
8661738e 2930 for (Int_t iDet = 0; iDet < AliQA::kNDET; iDet++) {
2931 TString detName(AliQA::GetDetName(iDet)) ;
abe0c04e 2932 AliQA * qa = AliQA::Instance(AliQA::DETECTORINDEX(iDet)) ;
2933 if ( qa->IsSet(AliQA::DETECTORINDEX(iDet), AliQA::kSIM, AliQA::kFATAL)) {
8661738e 2934 AliInfo(Form("QA status for %s in Hits and/or SDIGITS and/or Digits was Fatal; No reconstruction performed", detName.Data())) ;
abe0c04e 2935 } else {
2936 if ( fRunLocalReconstruction.Contains(AliQA::GetDetName(iDet)) ||
2937 fRunLocalReconstruction.Contains("ALL") ) {
2938 newRunLocalReconstruction += detName ;
2939 newRunLocalReconstruction += " " ;
2940 }
2941 if ( fRunTracking.Contains(AliQA::GetDetName(iDet)) ||
2942 fRunTracking.Contains("ALL") ) {
2943 newRunTracking += detName ;
2944 newRunTracking += " " ;
2945 }
2946 if ( fFillESD.Contains(AliQA::GetDetName(iDet)) ||
2947 fFillESD.Contains("ALL") ) {
2948 newFillESD += detName ;
2949 newFillESD += " " ;
8661738e 2950 }
2951 }
2952 }
abe0c04e 2953 fRunLocalReconstruction = newRunLocalReconstruction ;
2954 fRunTracking = newRunTracking ;
2955 fFillESD = newFillESD ;
a5fa6165 2956}
5b188f2f 2957
2958//_____________________________________________________________________________
2959Int_t AliReconstruction::GetDetIndex(const char* detector)
2960{
2961 // return the detector index corresponding to detector
2962 Int_t index = -1 ;
2963 for (index = 0; index < fgkNDetectors ; index++) {
2964 if ( strcmp(detector, fgkDetectorName[index]) == 0 )
2965 break ;
2966 }
2967 return index ;
2968}