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1 | /************************************************************************** |
2 | * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. * |
3 | * * |
4 | * Author: The ALICE Off-line Project. * |
5 | * Contributors are mentioned in the code where appropriate. * |
6 | * * |
7 | * Permission to use, copy, modify and distribute this software and its * |
8 | * documentation strictly for non-commercial purposes is hereby granted * |
9 | * without fee, provided that the above copyright notice appears in all * |
10 | * copies and that both the copyright notice and this permission notice * |
11 | * appear in the supporting documentation. The authors make no claims * |
12 | * about the suitability of this software for any purpose. It is * |
13 | * provided "as is" without express or implied warranty. * |
14 | **************************************************************************/ |
15 | // |
16 | // PID Response class for the TRD detector |
17 | // Based on 1D Likelihood approach |
18 | // Calculation of probabilities using Bayesian approach |
19 | // Attention: This method is only used to separate electrons from pions |
20 | // |
21 | // Authors: |
22 | // Markus Fasel <M.Fasel@gsi.de> |
23 | // Anton Andronic <A.Andronic@gsi.de> |
24 | // |
25 | #include <TClass.h> |
26 | #include <TAxis.h> |
27 | #include <TFile.h> |
28 | #include <TH1.h> |
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29 | #include <TKey.h> |
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30 | #include <TObjArray.h> |
31 | #include <TString.h> |
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32 | #include <TROOT.h> |
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33 | #include <TSystem.h> |
34 | |
35 | #include "AliLog.h" |
36 | |
37 | #include "AliTRDPIDResponse.h" |
38 | |
39 | ClassImp(AliTRDPIDResponse) |
40 | |
41 | const Double_t AliTRDPIDResponse::fgkPBins[kNPBins] = {1, 2, 3, 4, 5, 6}; |
42 | |
43 | //____________________________________________________________ |
44 | AliTRDPIDResponse::AliTRDPIDResponse(const Char_t * filename): |
45 | TObject() |
46 | ,fReferences(NULL) |
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47 | ,fGainNormalisationFactor(1.) |
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48 | ,fPIDmethod(2) |
49 | { |
50 | // |
51 | // Default constructor |
52 | // |
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53 | Int_t size = (AliPID::kSPECIES)*(kNPBins); |
54 | //memset(fMapRefHists, 0, sizeof(Int_t) * size); |
55 | for(Int_t ispec = 0; ispec < AliPID::kSPECIES; ispec++) |
56 | for(Int_t ipbin = 0; ipbin < kNPBins; ipbin++) |
57 | fMapRefHists[ispec][ipbin] = -1; |
58 | Load(filename); |
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59 | } |
60 | |
61 | //____________________________________________________________ |
62 | AliTRDPIDResponse::AliTRDPIDResponse(const AliTRDPIDResponse &ref): |
63 | TObject(ref) |
64 | ,fReferences(ref.fReferences) |
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65 | ,fGainNormalisationFactor(ref.fGainNormalisationFactor) |
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66 | ,fPIDmethod(ref.fPIDmethod) |
67 | { |
68 | // |
69 | // Copy constructor |
70 | // Flat copy of the reference histos |
71 | // For creating a deep copy call SetOwner |
72 | // |
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73 | Int_t size = (AliPID::kSPECIES)*(kNPBins); |
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74 | memcpy(fMapRefHists, ref.fMapRefHists, sizeof(Double_t) * size); |
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75 | } |
76 | |
77 | //____________________________________________________________ |
78 | AliTRDPIDResponse &AliTRDPIDResponse::operator=(const AliTRDPIDResponse &ref){ |
79 | // |
80 | // Assignment operator |
81 | // Performs a flat copy of the reference histos |
82 | // |
83 | if(this == &ref) return *this; |
84 | |
85 | // Make copy |
86 | TObject::operator=(ref); |
87 | if(IsOwner()){ |
88 | if(fReferences){ |
89 | fReferences->Delete(); |
90 | delete fReferences; |
91 | } |
92 | SetBit(kIsOwner, kFALSE); |
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93 | } else if(fReferences) delete fReferences; |
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94 | fReferences = ref.fReferences; |
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95 | Int_t size = (AliPID::kSPECIES)*(kNPBins); |
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96 | memcpy(fMapRefHists, ref.fMapRefHists, sizeof(Double_t) * size); |
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97 | fPIDmethod = ref.fPIDmethod; |
98 | |
99 | return *this; |
100 | } |
101 | |
102 | //____________________________________________________________ |
103 | AliTRDPIDResponse::~AliTRDPIDResponse(){ |
104 | // |
105 | // Destructor |
106 | // |
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107 | if(IsOwner()){ |
108 | // Destroy histos |
109 | if(fReferences) fReferences->Delete(); |
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110 | } |
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111 | if(fReferences) delete fReferences; |
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112 | } |
113 | |
114 | //____________________________________________________________ |
115 | Bool_t AliTRDPIDResponse::Load(const Char_t * filename){ |
116 | // |
117 | // Load References into the toolkit |
118 | // |
119 | if(!filename) |
120 | filename = Form("%s/STEER/LQ1dRef_v1.root",gSystem->ExpandPathName("$ALICE_ROOT")); |
121 | TFile *in = TFile::Open(filename); |
122 | if(!in){ |
123 | AliError("Ref file not available."); |
124 | return kFALSE; |
125 | } |
126 | |
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127 | gROOT->cd(); |
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128 | fReferences = new TObjArray(); |
129 | fReferences->SetOwner(); |
130 | TIter iter(in->GetListOfKeys()); |
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131 | TKey *histkey = NULL; |
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132 | TObject *tmp = NULL; |
133 | Int_t arrayPos = 0, pbin = 0; |
134 | AliPID::EParticleType species; |
135 | TString histname; |
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136 | while((histkey = dynamic_cast<TKey *>(iter()))){ |
137 | tmp = histkey->ReadObj(); |
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138 | histname = tmp->GetName(); |
139 | if(histname.BeginsWith("fHQel")){ // Electron histogram |
140 | histname.ReplaceAll("fHQel_p",""); |
141 | species = AliPID::kElectron; |
142 | } else { // Pion histogram |
143 | histname.ReplaceAll("fHQpi_p",""); |
144 | species = AliPID::kPion; |
145 | } |
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146 | pbin = histname.Atoi() - 1; |
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147 | fMapRefHists[species][pbin] = arrayPos; |
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148 | fReferences->AddAt(new TH1F(*dynamic_cast<TH1F *>(tmp)), arrayPos); |
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149 | arrayPos++; |
150 | } |
151 | in->Close(); |
152 | |
153 | AliDebug(2, Form("Successfully loaded %d Reference Histograms", arrayPos)); |
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154 | SetBit(kIsOwner, kTRUE); |
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155 | delete in; |
156 | return kTRUE; |
157 | } |
158 | |
159 | //____________________________________________________________ |
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160 | Bool_t AliTRDPIDResponse::GetResponse(Int_t n, Double_t *dedx, Float_t *p, Double_t prob[AliPID::kSPECIES], Bool_t kNorm) const |
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161 | { |
162 | // |
163 | // Calculate TRD likelihood values for the track based on dedx and |
164 | // momentum values. The likelihoods are calculated by query the |
165 | // reference data depending on the PID method selected |
166 | // |
167 | // Input parameter : |
168 | // n - number of dedx slices/chamber |
169 | // dedx - array of dedx slices organized layer wise |
170 | // p - array of momentum measurements organized layer wise |
171 | // |
172 | // Return parameters |
173 | // prob - probabilities allocated by TRD for particle specis |
174 | // kNorm - switch to normalize probabilities to 1. By default true. If false return not normalized prob. |
175 | // |
176 | // Return value |
177 | // true if calculation success |
178 | // |
179 | |
180 | if(!fReferences){ |
181 | AliWarning("Missing reference data. PID calculation not possible."); |
182 | return kFALSE; |
183 | } |
184 | |
185 | for(Int_t is(AliPID::kSPECIES); is--;) prob[is]=.2; |
186 | Double_t prLayer[AliPID::kSPECIES]; |
187 | memset(prLayer, 0, AliPID::kSPECIES*sizeof(Double_t)); |
188 | Double_t DE[10], s(0.); |
189 | for(Int_t il(kNlayer); il--;){ |
190 | if(!CookdEdx(&dedx[il*n], &DE[0])) continue; |
191 | |
192 | s=0.; |
193 | for(Int_t is(AliPID::kSPECIES); is--;){ |
194 | prLayer[is] = GetProbabilitySingleLayer(is, p[il], DE[0]); |
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195 | AliDebug(3, Form("Probability for Species %d in Layer %d: %f", is, il, prLayer[is])); |
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196 | s+=prLayer[is]; |
197 | } |
198 | if(s<1.e-30){ |
199 | AliDebug(2, Form("Null all species prob layer[%d].", il)); |
200 | continue; |
201 | } |
202 | for(Int_t is(AliPID::kSPECIES); is--;){ |
203 | if(kNorm) prLayer[is] /= s; |
204 | prob[is] *= prLayer[is]; |
205 | } |
206 | } |
207 | if(!kNorm) return kTRUE; |
208 | |
209 | s=0.; |
210 | for(Int_t is(AliPID::kSPECIES); is--;) s+=prob[is]; |
211 | if(s<1.e-30){ |
212 | AliDebug(2, "Null total prob."); |
213 | return kFALSE; |
214 | } |
215 | for(Int_t is(AliPID::kSPECIES); is--;) prob[is]/=s; |
216 | return kTRUE; |
217 | } |
218 | |
219 | |
220 | //____________________________________________________________ |
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221 | Double_t AliTRDPIDResponse::GetProbabilitySingleLayer(Int_t species, Double_t plocal, Double_t dEdx) const { |
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222 | // |
223 | // Get the non-normalized probability for a certain particle species as coming |
224 | // from the reference histogram |
225 | // Interpolation between momentum bins |
226 | // |
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227 | AliDebug(1, Form("Make Probability for Species %d with Momentum %f", species, plocal)); |
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228 | Int_t pbin = GetLowerMomentumBin(plocal); |
229 | Double_t pLayer = 0.; |
230 | // Do Interpolation exept for underflow and overflow |
231 | if(pbin >= 0 && pbin < kNPBins-1){ |
232 | TH1 *refHistUpper = NULL, *refHistLower = NULL; |
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233 | if(fMapRefHists[species][pbin] > 0) |
234 | refHistLower = dynamic_cast<TH1 *>(fReferences->UncheckedAt(fMapRefHists[species][pbin])); |
235 | if(fMapRefHists[species][pbin+1] > 0) |
236 | refHistUpper = dynamic_cast<TH1 *>(fReferences->UncheckedAt(fMapRefHists[species][pbin+1])); |
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237 | |
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238 | if (refHistLower && refHistUpper ) { |
239 | Double_t pLower = refHistLower->GetBinContent(refHistLower->GetXaxis()->FindBin(dEdx)); |
240 | Double_t pUpper = refHistUpper->GetBinContent(refHistUpper->GetXaxis()->FindBin(dEdx)); |
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241 | |
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242 | pLayer = pLower + (pUpper - pLower)/(fgkPBins[pbin+1]-fgkPBins[pbin]) * plocal; |
243 | } |
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244 | } |
245 | else{ |
246 | TH1 *refHist = NULL; |
247 | if(pbin < 0){ |
248 | // underflow |
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249 | if(fMapRefHists[species][0] >= 0){ |
250 | refHist = dynamic_cast<TH1 *>(fReferences->UncheckedAt(fMapRefHists[species][0])); |
251 | } |
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252 | } else { |
253 | // overflow |
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254 | if(fMapRefHists[species][kNPBins-1] > 0) |
255 | refHist = dynamic_cast<TH1 *>(fReferences->UncheckedAt(fMapRefHists[species][kNPBins-1])); |
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256 | } |
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257 | if (refHist) |
258 | pLayer = refHist->GetBinContent(refHist->GetXaxis()->FindBin(dEdx)); |
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259 | } |
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260 | AliDebug(1, Form("Probability %f", pLayer)); |
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261 | return pLayer; |
262 | } |
263 | |
264 | //____________________________________________________________ |
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265 | Int_t AliTRDPIDResponse::GetLowerMomentumBin(Double_t p) const { |
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266 | // |
267 | // Get the momentum bin for a given momentum value |
268 | // |
269 | Int_t bin = -1; |
270 | if(p > fgkPBins[kNPBins-1]) return kNPBins-1; |
271 | for(Int_t ibin = 0; ibin < kNPBins - 1; ibin++){ |
272 | if(p >= fgkPBins[ibin] && p < fgkPBins[ibin+1]){ |
273 | bin = ibin; |
274 | break; |
275 | } |
276 | } |
277 | return bin; |
278 | } |
279 | |
280 | //____________________________________________________________ |
281 | void AliTRDPIDResponse::SetOwner(){ |
282 | // |
283 | // Make Deep Copy of the Reference Histograms |
284 | // |
285 | if(!fReferences || IsOwner()) return; |
286 | TObjArray *ctmp = new TObjArray(); |
287 | for(Int_t ien = 0; ien < fReferences->GetEntriesFast(); ien++) |
288 | ctmp->AddAt(fReferences->UncheckedAt(ien)->Clone(), ien); |
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289 | delete fReferences; |
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290 | fReferences = ctmp; |
291 | SetBit(kIsOwner, kTRUE); |
292 | } |
293 | |
294 | //____________________________________________________________ |
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295 | Bool_t AliTRDPIDResponse::CookdEdx(Double_t *in, Double_t *out) const |
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296 | { |
297 | switch(fPIDmethod){ |
298 | case 0: // NN |
299 | break; |
300 | case 1: // 2D LQ |
301 | break; |
302 | case 2: // 1D LQ |
303 | out[0]= 0.; |
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304 | for(Int_t islice = 0; islice < 8; islice++) out[0] += in[islice] * fGainNormalisationFactor; |
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305 | if(out[0] < 1e-6) return kFALSE; |
306 | break; |
307 | default: |
308 | return kFALSE; |
309 | } |
310 | return kTRUE; |
311 | } |
312 | |