[u/mrichter/AliRoot.git] / STEER / STEER / AliReconstruction.h

#ifndef ALIRECONSTRUCTION_H
#define ALIRECONSTRUCTION_H
/* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
 * See cxx source for full Copyright notice                               */

/* $Id$ */

///////////////////////////////////////////////////////////////////////////////
//                                                                           //
// class for running the reconstruction                                      //
// Clusters and tracks are created for all detectors and all events by       //
// typing:                                                                   //
//                                                                           //
//   AliReconstruction rec;                                                  //
//   rec.Run();                                                              //
//                                                                           //
///////////////////////////////////////////////////////////////////////////////


#include <TSelector.h>
#include <TString.h>
#include <TObjArray.h>

class AliReconstructor;
class AliRunLoader;
class AliRawReader;
class AliLoader;
class AliTracker;
class AliMagF;
class AliVertexer;
class AliTrackleter;
class AliESDVertex;
class AliESDEvent;
class AliESDfriend;
class AliESDpid;
class AliVertexerTracks;
class TFile;
class TTree;
class TList;
class AliQAManager; 
class TMap;
class AliRecoParam;
class AliDetectorRecoParam;
class AliRunInfo;
class AliGRPObject;
class THashTable;
class AliTriggerRunScalers;
class AliCTPTimeParams;
class AliAnalysisManager;
class AliRecoInputHandler;

#include "AliQAv1.h"
#include "AliEventInfo.h"
#include "AliRecoParam.h"

using std::ofstream;

class AliReconstruction: public TSelector {
public:
  AliReconstruction(const char* gAliceFilename = "galice.root");
  virtual ~AliReconstruction();

  void           SetGAliceFile(const char* fileName);
  void           SetInput(const char* input);
  void           SetOutput(const char* output);

  void           SetEquipmentIdMap(const char *mapFile) {fEquipIdMap = mapFile;};
  void           SetEventRange(Int_t firstEvent = 0, Int_t lastEvent = -1) 
    {fFirstEvent = firstEvent; fLastEvent = lastEvent;};
  void           SetNumberOfEventsPerFile(UInt_t nEvents)
    {fNumberOfEventsPerFile = nEvents;};
  void           SetFractionFriends(Double32_t frac = 0.04)
    {fFractionFriends = frac;};
  void           SetOption(const char* detector, const char* option);
  void           SetRecoParam(const char* detector, AliDetectorRecoParam *par);

  void           SetRunLocalReconstruction(const char* detectors) {
    fRunLocalReconstruction = detectors;};
  void           SetRunTracking(const char* detectors) {
    fRunTracking = detectors;};
  void           SetFillESD(const char* detectors) {fFillESD = detectors;};
  void           SetRunReconstruction(const char* detectors) {
    SetRunLocalReconstruction(detectors); 
    SetRunTracking(detectors);
    SetFillESD(detectors);};
  void           SetDeleteRecPoints(const char* dets) {fDeleteRecPoints = dets;}
  void           SetDeleteDigits(const char* dets)    {fDeleteDigits = dets;}
  void           SetUseTrackingErrorsForAlignment(const char* detectors) 
    {fUseTrackingErrorsForAlignment = detectors;};
  void           SetLoadAlignFromCDB(Bool_t load)  {fLoadAlignFromCDB = load;};
  void           SetLoadAlignData(const char* detectors) 
    {fLoadAlignData = detectors;};

  //*** Global reconstruction flag setters
  void SetRunMultFinder(Bool_t flag=kTRUE) {fRunMultFinder=flag;};
  void SetRunVertexFinder(Bool_t flag=kTRUE) {fRunVertexFinder=flag;};
  void SetRunVertexFinderTracks(Bool_t flag=kTRUE) {fRunVertexFinderTracks=flag;};
  void SetRunV0Finder(Bool_t flag=kTRUE) {fRunV0Finder=flag;};
  void SetRunCascadeFinder(Bool_t flag=kTRUE) {fRunCascadeFinder=flag;};
  void SetStopOnError(Bool_t flag=kTRUE) {fStopOnError=flag;}
  void SetStopOnMissingTriggerFile(Bool_t flag=kTRUE) {fStopOnMissingTriggerFile=flag;}
  void SetWriteAlignmentData(Bool_t flag=kTRUE){fWriteAlignmentData=flag;}
  void SetWriteESDfriend(Bool_t flag=kTRUE){fWriteESDfriend=flag;}
  void SetFillTriggerESD(Bool_t flag=kTRUE){fFillTriggerESD=flag;}
  void SetDiamondProfileSPD(AliESDVertex *dp) {fDiamondProfileSPD=dp;}
  void SetDiamondProfile(AliESDVertex *dp) {fDiamondProfile=dp;}
  void SetDiamondProfileTPC(AliESDVertex *dp) {fDiamondProfileTPC=dp;}
		   
  void SetCleanESD(Bool_t flag=kTRUE){fCleanESD=flag;}
  void SetUseHLTData(const char* detectors){fUseHLTData=detectors;}
  void SetV0DCAmax(Float_t d) {fV0DCAmax=d;}
  void SetV0CsPmin(Float_t d) {fV0CsPmin=d;}
  void SetDmax(Float_t d) {fDmax=d;}
  void SetZmax(Float_t z) {fZmax=z;}
  Float_t GetV0DCAmax() const {return fV0DCAmax;}
  Float_t GetV0CsPmin() const {return fV0CsPmin;}
  Float_t GetDmax() const {return fDmax;}
  Float_t GetZmax() const {return fZmax;}
  //
  Bool_t  IsRunMultFinder()   const {return fRunMultFinder;}
  
  // CDB storage activation
  void SetDefaultStorage(const char* uri);
  void SetSpecificStorage(const char* calibType, const char* uri);
  void SetCDBSnapshotMode(const char* snapshotFileName);

  Bool_t MisalignGeometry(const TString& detectors);

  void           SetAlignObjArray(TObjArray *array)
                   {fAlignObjArray = array;
		   fLoadAlignFromCDB = kFALSE;}

  virtual Int_t  Version() const {return 2;}
  virtual void   Begin(TTree*);
  virtual void   SlaveBegin(TTree*);
  virtual void   Init(TTree *tree);
  virtual Bool_t Process(Long64_t entry);
  virtual Bool_t ProcessEvent(Int_t iEvent);
  virtual void   SlaveTerminate();
  virtual void   Terminate();
  virtual Bool_t Run(const char* input = NULL);
  void           Abort(const char *method, EAbort what);
  virtual void	 SetOption(const char* option) {
    TSelector::SetOption(option);
  }

  // Trackers
  AliTracker* GetTracker(Int_t idx) const { return fTracker[idx]; }
  Bool_t      CreateTrackers(const TString& detectors);
  void        ImportRunLoader(AliRunLoader* rl) { fRunLoader = rl; }

  // Quality Assurance 
  void    SetQACycles(AliQAv1::DETECTORINDEX_t det, Int_t cycles) { fQACycles[det] = cycles ; }
  void    SetQAWriteExpert(AliQAv1::DETECTORINDEX_t det) { fQAWriteExpert[det] = kTRUE ; }
  Bool_t  SetRunQA(TString detAndAction="ALL:ALL") ; 
  void    SetRunGlobalQA(Bool_t flag=kTRUE){fRunGlobalQA = flag;}
  void    SetQARefDefaultStorage(const char* uri);
  void    InitQA();
  void    MergeQA(const char *fileName = NULL); 
  void    SetWriteQAExpert() { fWriteQAExpertData = kTRUE ; }
  Bool_t  IsRunQA() const { return fRunQA ; } 
  Bool_t  IsRunGlobalQA() const { return fRunGlobalQA ; }
  Bool_t  IsInTasks(AliQAv1::TASKINDEX_t tsk) { return fQATasks.Contains(Form("%d", tsk)) ; }
  
  // Plane Efficiency Evaluation
  void    SetRunPlaneEff(Bool_t flag=kFALSE)  {fRunPlaneEff = flag;}

  enum {
// #ifdef MFT_UPGRADE 
//     kNDetectors = 16   // number of detectors
// #else
//     kNDetectors = 15   // number of detectors
// #endif 
    kNDetectors = 16   // number of detectors    // AU
  };
  static Int_t   GetDetIndex(const char * detector);

  // Upgrade
 void SetUpgradeModule(const char* detectors)  {fUpgradeModule = detectors; MatchUpgradeDetector() ; }
 void MatchUpgradeDetector();

  // Connection to analysis manager. 
  // If a macro is set it should contain a function returning an analysis 
  // manager object. The macro is ignored in case the analysis manager is 
  // set via SetAnalysisManager
  void        SetAnalysisMacro(const char *macropath) {fAnalysisMacro = macropath;}
  const char *GetAnalysisMacro() const {return fAnalysisMacro.Data();}
  void        SetAnalysisManager(AliAnalysisManager *mgr) {fAnalysis = mgr;}
  AliAnalysisManager *GetAnalysisManager() const {return fAnalysis;}

  // A method to declare defined trigger classes even if they are not
  // present in the run, needed for proper event selection based on trigger
  void        DeclareTriggerClasses(const char *trClasses) {fDeclTriggerClasses = trClasses;}
  //
  //
  Bool_t       HasEnoughResources(int ev);
  void         SetStopOnResourcesExcess(int vRSS=3000,int vVMEM=4000);
  //
  //
protected:
  virtual Bool_t ProcessEvent(void* event);
  void           InitRun(const char* input);
  // Functions needed to select events for which we store the ESD friends
  Bool_t IsHighPt() const;
  Bool_t IsCosmicOrCalibSpecie() const;
  void WriteESDfriend();

private:
  AliReconstruction(const AliReconstruction& rec);
  AliReconstruction& operator = (const AliReconstruction& rec);

  void           InitRawReader(const char* input);
  void           InitCDB();
  Bool_t         InitGRP();
  void           SetCDBLock();
  Bool_t         SetRunNumberFromData();
  Bool_t         LoadCDB();
  Bool_t         LoadTriggerScalersCDB();
  Bool_t         LoadCTPTimeParamsCDB();
  Bool_t         ReadIntensityInfoCDB();
  Bool_t         RunLocalEventReconstruction(const TString& detectors);
  Bool_t         RunVertexFinder(AliESDEvent*& esd);
  Bool_t         RunMuonTracking(AliESDEvent*& esd);
  Bool_t         RunSPDTrackleting(AliESDEvent*& esd);
  Bool_t         RunMultFinder(AliESDEvent*& esd);
  Bool_t         RunTracking(AliESDEvent*& esd, AliESDpid &PID);
  Bool_t         CleanESD(AliESDEvent *esd);
  Bool_t         FillESD(AliESDEvent*& esd, const TString& detectors);
  Bool_t         FillTriggerESD(AliESDEvent*& esd);
  Bool_t         FillTriggerScalers(AliESDEvent*& esd);
  Bool_t         FillRawEventHeaderESD(AliESDEvent*& esd);
  void           DeleteRecPoints(const TString& detectors);
  void           DeleteDigits(const TString& detectors);

  Bool_t         IsSelected(TString detName, TString& detectors) const;
  Bool_t         InitRunLoader();
  AliReconstructor* GetReconstructor(Int_t iDet);
  AliVertexer*   CreateVertexer();
  AliTrackleter* CreateMultFinder();
  void           CleanUp();

  Bool_t         ParseOutput();

  //==========================================//
  void           WriteAlignmentData(AliESDEvent* esd);

  void           FillRawDataErrorLog(Int_t iEvent, AliESDEvent* esd);

  //Quality Assurance
  //  void                 CheckQA() ;

  // Plane Efficiency evaluation
  Bool_t  FinishPlaneEff(); //ultimate tasks related to Plane Eff. evaluation 
  Bool_t  InitPlaneEff();   // initialize what is needed for Plane Eff. evaluation

  Bool_t               InitAliEVE();
  void                 RunAliEVE();

  Bool_t         InitRecoParams(); // init the array with the reconstruciton parameters
  Bool_t         GetEventInfo();   // fill the event info inside the event loop

  const char    *MatchDetectorList(const char *detectorList, UInt_t detectorMask);

  //*** Global reconstruction flags *******************
  Bool_t         fRunVertexFinder;    // run the vertex finder
  Bool_t         fRunVertexFinderTracks;    // run the vertex finder with tracks
  Bool_t         fRunMuonTracking;    // run the MUON tracking
  Bool_t         fRunV0Finder;        // run the ESD V0 finder
  Bool_t         fRunCascadeFinder;   // run the ESD cascade finder
  Bool_t         fRunMultFinder;      // run the trackleter for ITS clusters
  Bool_t         fStopOnError;        // stop or continue on errors
  Bool_t         fStopOnMissingTriggerFile; // stop if the simulated trigger file is absent
  Bool_t         fWriteAlignmentData; // write track space-points flag
  Bool_t         fWriteESDfriend;     // write ESD friend flag
  Bool_t         fFillTriggerESD;     // fill trigger info into ESD

  //*** Clean ESD flag and parameters *******************
  Bool_t         fCleanESD;      // clean ESD flag
  Float_t        fV0DCAmax;      // max. allowed DCA between V0 daugthers 
  Float_t        fV0CsPmin;      // min. allowed cosine of V0 pointing angle 
  Float_t        fDmax;          // max. allowed transverse impact parameter 
  Float_t        fZmax;          // max. allowed longitudinal impact parameter 

  TString        fRunLocalReconstruction; // run the local reconstruction for these detectors
  TString        fRunTracking;        // run the tracking for these detectors
  TString        fFillESD;            // fill ESD for these detectors
  TString        fDeleteRecPoints;    // delete recpoints after each event
  TString        fDeleteDigits;       // delete digits after each event
  TString        fLoadCDB;            // prefetch CDB entries and init reco-params for these detectors
  TString        fUseTrackingErrorsForAlignment; // for these detectors
  TString        fGAliceFileName;     // name of the galice file
  TString        fRawInput;           // name of input raw-data file or directory
  TString        fESDOutput;          //! name of output ESD file
  TString        fProofOutputFileName;//! name of output file in PROOF mode
  TString        fProofOutputLocation;//! output location in PROOF mode
  Bool_t         fProofOutputDataset; //! keep output file in PROOF mode in dataset or merge
  TString        fProofOutputArchive; //! list of file to be kept in output zip archive in PROOF mode
  TString        fEquipIdMap;         // name of file with equipment id map
  Int_t          fFirstEvent;         // index of first event to be reconstr.
  Int_t          fLastEvent;          // index of last event to be reconstr.
  UInt_t         fNumberOfEventsPerFile; // number of events per file in case of raw-data reconstruction
  Double32_t     fFractionFriends; // fraction of ESD friends to be stored
  TObjArray      fOptions;            // options for reconstructor objects
  Bool_t         fLoadAlignFromCDB;   // Load alignment data from CDB and apply it to geometry or not
  TString        fLoadAlignData;      // Load alignment data from CDB for these detectors
  TString        fUseHLTData;        // Detectors for which the HLT data is used as input
  AliRunInfo*    fRunInfo;            // an object which contains essential global conditions information
  AliEventInfo   fEventInfo;          // an object which contains essential event information
  AliTriggerRunScalers* fRunScalers;  // an object which contains the trigger counters for xsection
  AliCTPTimeParams* fCTPTimeParams;   // an object which contains the trigger delays
  AliCTPTimeParams* fCTPTimeAlign;    // an object which contains the CTP (mis)alignment data
  AliRunLoader*  fRunLoader;          //! current run loader object
  AliRawReader*  fRawReader;          //! current raw data reader
  AliRawReader*  fParentRawReader;    //! parent raw data reader in case of AliRawReaderHLT

  static const char* fgkDetectorName[kNDetectors]; //! names of detectors
  AliReconstructor*  fReconstructor[kNDetectors];  //! array of reconstructor objects
  AliRecoParam   fRecoParam;                      // container for the reco-param objects for detectors
  AliLoader*     fLoader[kNDetectors];   //! detector loaders
  AliTracker*    fTracker[kNDetectors];  //! trackers
  AliTracker*    fSPDTrackleter;           //! trackleter [for SPD Plane Efficiency purposes]
  AliESDVertex*  fDiamondProfileSPD;       // (x,y) diamond profile from SPD for AliITSVertexer3D(Z)
  AliESDVertex*  fDiamondProfile;          // (x,y) diamond profile for AliVertexerTracks (ITS+TPC)
  AliESDVertex*  fDiamondProfileTPC;       // (x,y) diamond profile from TPC for AliVertexerTracks
  THashTable*    fListOfCosmicTriggers;    // list of cosmic triggers as defined by trigger coordination

  AliGRPObject*  fGRPData;              // Data from the GRP/GRP/Data CDB folder

  TObjArray* 	 fAlignObjArray;      //! array with the alignment objects to be applied to the geometry

  TString	 fCDBUri;	      //! Uri of the default CDB storage
  TString	 fQARefUri;	    //! Uri of the default QA reference storage
  TObjArray      fSpecCDBUri;         //! Array with detector specific CDB storages
  Bool_t 	 fInitCDBCalled;               //! flag to check if CDB storages are already initialized
  Bool_t         fCDBSnapshotMode;             //! flag true if we are setting the CDB Manager in snapshot mode
  Bool_t 	 fSetRunNumberFromDataCalled;  //! flag to check if run number is already loaded from run loader

  //Quality Assurance
  Int_t  fQACycles[     AliQAv1::kNDET];  // # events over which QA data are accumulated
  Bool_t fQAWriteExpert[AliQAv1::kNDET];  // Flag to save or not expert QA data
  TString               fQADetectors ;  // list of detectors to be QA'ed 	
  TString               fQATasks ;      // list of QA tasks to be performed	
  Bool_t                fRunQA ;        // Run QA flag
  Bool_t                fRunGlobalQA;   // Run global QA flag
  Bool_t                fSameQACycle;   //! open a new QA data file or not
  Bool_t                fInitQACalled;  //! control of QA intialisation
  Bool_t                fWriteQAExpertData ; //! decides wheter or not to write experts QA data; true by default

  // Plane Efficiency Evaluation
  Bool_t         fRunPlaneEff ;      // Evaluate Plane Efficiency

  // New members needed in order to split Run method
  // into InitRun,RunEvent,FinishRun methods
  AliESDEvent*         fesd;        //! Pointer to the ESD event object
  AliESDEvent*         fhltesd;     //! Pointer to the HLT ESD event object
  AliESDfriend*        fesdf;       //! Pointer to the ESD friend object
  TFile*               ffile;       //! Pointer to the ESD file
  TFile*               ffileF;      //! Pointer to the ESD friend file
  TTree*               ftree;       //! Pointer to the ESD tree
  TTree*               ftreeF;      //! Pointer to the ESD friend tree
  TTree*               fhlttree;    //! Pointer to the HLT ESD tree
  AliVertexerTracks*   ftVertexer;  //! Pointer to the vertexer based on ESD tracks
  Bool_t               fIsNewRunLoader; // galice.root created from scratch (real raw data case)
  Bool_t               fRunAliEVE;  // Run AliEVE or not
  Double_t             fBeamInt[2][2]; //! mean beam intensities from AliLHCData
  
  TTree*              fChain;      //! The raw-data chain in case of AliRawReaderChain

  // Counters used in WriteESDfriend()
  Int_t fNall;    //! Number of reconstructed events
  Int_t fNspecie; //! Number of events, selected by IsCosmicOrCalibSpecie
  Int_t fSspecie; //! Number of events, sampled from fNspecie
  Int_t fNhighPt; //! Number of events, selected by IsHighPt 
  Int_t fShighPt; //! Number of events, sampled from fNhighPt
 
  // Upgrade detector reconstruction
  TString fUpgradeModule;
  Bool_t  fUpgradeMask[kNDetectors];
  // Connect an analysis manager in the event loop
  TString              fAnalysisMacro; // Full path to a macro creating an analysis manager train
  AliAnalysisManager  *fAnalysis;      //! Analysis manager
  AliRecoInputHandler *fRecoHandler;   //! Input handler adapted for reconstruction
  TString              fDeclTriggerClasses; // Declared defined trigger classes
  //
  Bool_t               fStopped;        //  flag that reco is stopped due to the limited resources 
  Int_t                fMaxRSS;         //  max RSS memory, MB
  Int_t                fMaxVMEM;        //  max VMEM memory, MB
  static const char*   fgkStopEvFName;  //  filename for stop.event stamp
  //
  ClassDef(AliReconstruction, 45)      // class for running the reconstruction
};

#endif
Commit	Line	Data
596a855f	1	#ifndef ALIRECONSTRUCTION_H
	2	#define ALIRECONSTRUCTION_H
	3	/* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
	4	* See cxx source for full Copyright notice */
	5
	6	/* $Id$ */
	7
af7ba10c	8	///////////////////////////////////////////////////////////////////////////////
	9	// //
	10	// class for running the reconstruction //
	11	// Clusters and tracks are created for all detectors and all events by //
	12	// typing: //
	13	// //
a6eb5fc9	14	// AliReconstruction rec; //
af7ba10c	15	// rec.Run(); //
	16	// //
	17	///////////////////////////////////////////////////////////////////////////////
	18
	19
4b71572b	20	#include <TSelector.h>
596a855f	21	#include <TString.h>
59697224	22	#include <TObjArray.h>
596a855f	23
b8cd5251	24	class AliReconstructor;
596a855f	25	class AliRunLoader;
b649205a	26	class AliRawReader;
596a855f	27	class AliLoader;
596a855f	28	class AliTracker;
61807e09	29	class AliMagF;
c84a5e9e	30	class AliVertexer;
1f9831ab	31	class AliTrackleter;
9178838a	32	class AliESDVertex;
af885e0f	33	class AliESDEvent;
21a3aa09	34	class AliESDfriend;
10d100d4	35	class AliESDpid;
21a3aa09	36	class AliVertexerTracks;
e583c30d	37	class TFile;
46698ae4	38	class TTree;
444753c6	39	class TList;
b03591ab	40	class AliQAManager;
6b6e4472	41	class TMap;
7e88424f	42	class AliRecoParam;
	43	class AliDetectorRecoParam;
	44	class AliRunInfo;
44e45fac	45	class AliGRPObject;
77ba28ba	46	class THashTable;
522fdd91	47	class AliTriggerRunScalers;
70410f60	48	class AliCTPTimeParams;
42457748	49	class AliAnalysisManager;
42457748	50	class AliRecoInputHandler;
70410f60	51
4e25ac79	52	#include "AliQAv1.h"
7e88424f	53	#include "AliEventInfo.h"
7e88424f	54	#include "AliRecoParam.h"
596a855f	55
f3664c51	56	using std::ofstream;
f3664c51	57
4b71572b	58	class AliReconstruction: public TSelector {
596a855f	59	public:
4b71572b	60	AliReconstruction(const char* gAliceFilename = "galice.root");
596a855f	61	virtual ~AliReconstruction();
	62
	63	void SetGAliceFile(const char* fileName);
b58710ef	64	void SetInput(const char* input);
975320a0	65	void SetOutput(const char* output);
21a3aa09	66
35042093	67	void SetEquipmentIdMap(const char *mapFile) {fEquipIdMap = mapFile;};
b26c3770	68	void SetEventRange(Int_t firstEvent = 0, Int_t lastEvent = -1)
b26c3770	69	{fFirstEvent = firstEvent; fLastEvent = lastEvent;};
973388c2	70	void SetNumberOfEventsPerFile(UInt_t nEvents)
973388c2	71	{fNumberOfEventsPerFile = nEvents;};
fc01854a	72	void SetFractionFriends(Double32_t frac = 0.04)
fc01854a	73	{fFractionFriends = frac;};
efd2085e	74	void SetOption(const char* detector, const char* option);
7e88424f	75	void SetRecoParam(const char* detector, AliDetectorRecoParam *par);
596a855f	76
59697224	77	void SetRunLocalReconstruction(const char* detectors) {
59697224	78	fRunLocalReconstruction = detectors;};
b8cd5251	79	void SetRunTracking(const char* detectors) {
b8cd5251	80	fRunTracking = detectors;};
596a855f	81	void SetFillESD(const char* detectors) {fFillESD = detectors;};
b8cd5251	82	void SetRunReconstruction(const char* detectors) {
	83	SetRunLocalReconstruction(detectors);
	84	SetRunTracking(detectors);
	85	SetFillESD(detectors);};
e54c9180	86	void SetDeleteRecPoints(const char* dets) {fDeleteRecPoints = dets;}
e54c9180	87	void SetDeleteDigits(const char* dets) {fDeleteDigits = dets;}
48ce48d1	88	void SetUseTrackingErrorsForAlignment(const char* detectors)
48ce48d1	89	{fUseTrackingErrorsForAlignment = detectors;};
6bae477a	90	void SetLoadAlignFromCDB(Bool_t load) {fLoadAlignFromCDB = load;};
	91	void SetLoadAlignData(const char* detectors)
	92	{fLoadAlignData = detectors;};
c84a5e9e	93
61807e09	94	//*** Global reconstruction flag setters
a0ef2c64	95	void SetRunMultFinder(Bool_t flag=kTRUE) {fRunMultFinder=flag;};
1d99986f	96	void SetRunVertexFinder(Bool_t flag=kTRUE) {fRunVertexFinder=flag;};
a84e2607	97	void SetRunVertexFinderTracks(Bool_t flag=kTRUE) {fRunVertexFinderTracks=flag;};
d1683eef	98	void SetRunV0Finder(Bool_t flag=kTRUE) {fRunV0Finder=flag;};
d1683eef	99	void SetRunCascadeFinder(Bool_t flag=kTRUE) {fRunCascadeFinder=flag;};
1d99986f	100	void SetStopOnError(Bool_t flag=kTRUE) {fStopOnError=flag;}
07472556	101	void SetStopOnMissingTriggerFile(Bool_t flag=kTRUE) {fStopOnMissingTriggerFile=flag;}
1d99986f	102	void SetWriteAlignmentData(Bool_t flag=kTRUE){fWriteAlignmentData=flag;}
1d99986f	103	void SetWriteESDfriend(Bool_t flag=kTRUE){fWriteESDfriend=flag;}
b647652d	104	void SetFillTriggerESD(Bool_t flag=kTRUE){fFillTriggerESD=flag;}
f2a195c1	105	void SetDiamondProfileSPD(AliESDVertex *dp) {fDiamondProfileSPD=dp;}
9178838a	106	void SetDiamondProfile(AliESDVertex *dp) {fDiamondProfile=dp;}
43c9dae1	107	void SetDiamondProfileTPC(AliESDVertex *dp) {fDiamondProfileTPC=dp;}
1d99986f	108
7f68891d	109	void SetCleanESD(Bool_t flag=kTRUE){fCleanESD=flag;}
cc9e123e	110	void SetUseHLTData(const char* detectors){fUseHLTData=detectors;}
a023d8d8	111	void SetV0DCAmax(Float_t d) {fV0DCAmax=d;}
a023d8d8	112	void SetV0CsPmin(Float_t d) {fV0CsPmin=d;}
7f68891d	113	void SetDmax(Float_t d) {fDmax=d;}
7f68891d	114	void SetZmax(Float_t z) {fZmax=z;}
a023d8d8	115	Float_t GetV0DCAmax() const {return fV0DCAmax;}
a023d8d8	116	Float_t GetV0CsPmin() const {return fV0CsPmin;}
7f68891d	117	Float_t GetDmax() const {return fDmax;}
7f68891d	118	Float_t GetZmax() const {return fZmax;}
a0ef2c64	119	//
a0ef2c64	120	Bool_t IsRunMultFinder() const {return fRunMultFinder;}
795e4a22	121
024cf675	122	// CDB storage activation
024cf675	123	void SetDefaultStorage(const char* uri);
c3a7b59a	124	void SetSpecificStorage(const char* calibType, const char* uri);
7c41d36a	125	void SetCDBSnapshotMode(const char* snapshotFileName);
24f7a148	126
6bae477a	127	Bool_t MisalignGeometry(const TString& detectors);
	128
	129	void SetAlignObjArray(TObjArray *array)
	130	{fAlignObjArray = array;
	131	fLoadAlignFromCDB = kFALSE;}
ddfbc51a	132
4b71572b	133	virtual Int_t Version() const {return 2;}
	134	virtual void Begin(TTree*);
	135	virtual void SlaveBegin(TTree*);
	136	virtual void Init(TTree *tree);
	137	virtual Bool_t Process(Long64_t entry);
	138	virtual Bool_t ProcessEvent(Int_t iEvent);
	139	virtual void SlaveTerminate();
	140	virtual void Terminate();
21a3aa09	141	virtual Bool_t Run(const char* input = NULL);
4b71572b	142	void Abort(const char *method, EAbort what);
8fb1f1dc	143	virtual void SetOption(const char* option) {
	144	TSelector::SetOption(option);
	145	}
596a855f	146
c7c63b89	147	// Trackers
ac4a7581	148	AliTracker* GetTracker(Int_t idx) const { return fTracker[idx]; }
c7c63b89	149	Bool_t CreateTrackers(const TString& detectors);
	150	void ImportRunLoader(AliRunLoader* rl) { fRunLoader = rl; }
	151
a5fa6165	152	// Quality Assurance
4e25ac79	153	void SetQACycles(AliQAv1::DETECTORINDEX_t det, Int_t cycles) { fQACycles[det] = cycles ; }
4e25ac79	154	void SetQAWriteExpert(AliQAv1::DETECTORINDEX_t det) { fQAWriteExpert[det] = kTRUE ; }
ce43afbe	155	Bool_t SetRunQA(TString detAndAction="ALL:ALL") ;
aa3c69a9	156	void SetRunGlobalQA(Bool_t flag=kTRUE){fRunGlobalQA = flag;}
f1c1204d	157	void SetQARefDefaultStorage(const char* uri);
f1c1204d	158	void InitQA();
87da0921	159	void MergeQA(const char *fileName = NULL);
75373542	160	void SetWriteQAExpert() { fWriteQAExpertData = kTRUE ; }
0a035be5	161	Bool_t IsRunQA() const { return fRunQA ; }
0a035be5	162	Bool_t IsRunGlobalQA() const { return fRunGlobalQA ; }
514cb8c7	163	Bool_t IsInTasks(AliQAv1::TASKINDEX_t tsk) { return fQATasks.Contains(Form("%d", tsk)) ; }
514cb8c7	164
7167ae53	165	// Plane Efficiency Evaluation
	166	void SetRunPlaneEff(Bool_t flag=kFALSE) {fRunPlaneEff = flag;}
	167
7e88424f	168	enum {
820b4d9e	169	// #ifdef MFT_UPGRADE
	170	// kNDetectors = 16 // number of detectors
	171	// #else
	172	// kNDetectors = 15 // number of detectors
	173	// #endif
	174	kNDetectors = 16 // number of detectors // AU
7e88424f	175	};
	176	static Int_t GetDetIndex(const char * detector);
	177
f9fc20b4	178	// Upgrade
	179	void SetUpgradeModule(const char* detectors) {fUpgradeModule = detectors; MatchUpgradeDetector() ; }
	180	void MatchUpgradeDetector();
	181
42457748	182	// Connection to analysis manager.
	183	// If a macro is set it should contain a function returning an analysis
	184	// manager object. The macro is ignored in case the analysis manager is
	185	// set via SetAnalysisManager
	186	void SetAnalysisMacro(const char *macropath) {fAnalysisMacro = macropath;}
	187	const char *GetAnalysisMacro() const {return fAnalysisMacro.Data();}
	188	void SetAnalysisManager(AliAnalysisManager *mgr) {fAnalysis = mgr;}
	189	AliAnalysisManager *GetAnalysisManager() const {return fAnalysis;}
	190
764daca3	191	// A method to declare defined trigger classes even if they are not
	192	// present in the run, needed for proper event selection based on trigger
	193	void DeclareTriggerClasses(const char *trClasses) {fDeclTriggerClasses = trClasses;}
30b916f7	194	//
	195	//
	196	Bool_t HasEnoughResources(int ev);
	197	void SetStopOnResourcesExcess(int vRSS=3000,int vVMEM=4000);
	198	//
	199	//
2f954aba	200	protected:
	201	virtual Bool_t ProcessEvent(void* event);
	202	void InitRun(const char* input);
f00558b6	203	// Functions needed to select events for which we store the ESD friends
	204	Bool_t IsHighPt() const;
	205	Bool_t IsCosmicOrCalibSpecie() const;
	206	void WriteESDfriend();
2f954aba	207
596a855f	208	private:
61807e09	209	AliReconstruction(const AliReconstruction& rec);
	210	AliReconstruction& operator = (const AliReconstruction& rec);
	211
4b71572b	212	void InitRawReader(const char* input);
930e6e3e	213	void InitCDB();
	214	Bool_t InitGRP();
	215	void SetCDBLock();
795e4a22	216	Bool_t SetRunNumberFromData();
4b71572b	217	Bool_t LoadCDB();
522fdd91	218	Bool_t LoadTriggerScalersCDB();
70410f60	219	Bool_t LoadCTPTimeParamsCDB();
3d84ad67	220	Bool_t ReadIntensityInfoCDB();
b26c3770	221	Bool_t RunLocalEventReconstruction(const TString& detectors);
af885e0f	222	Bool_t RunVertexFinder(AliESDEvent*& esd);
af885e0f	223	Bool_t RunMuonTracking(AliESDEvent*& esd);
58e8dc31	224	Bool_t RunSPDTrackleting(AliESDEvent*& esd);
1f9831ab	225	Bool_t RunMultFinder(AliESDEvent*& esd);
10d100d4	226	Bool_t RunTracking(AliESDEvent*& esd, AliESDpid &PID);
d64bd07d	227	Bool_t CleanESD(AliESDEvent *esd);
af885e0f	228	Bool_t FillESD(AliESDEvent*& esd, const TString& detectors);
af885e0f	229	Bool_t FillTriggerESD(AliESDEvent*& esd);
f7812afc	230	Bool_t FillTriggerScalers(AliESDEvent*& esd);
af885e0f	231	Bool_t FillRawEventHeaderESD(AliESDEvent*& esd);
e54c9180	232	void DeleteRecPoints(const TString& detectors);
e54c9180	233	void DeleteDigits(const TString& detectors);
596a855f	234
e583c30d	235	Bool_t IsSelected(TString detName, TString& detectors) const;
f08fc9f5	236	Bool_t InitRunLoader();
b8cd5251	237	AliReconstructor* GetReconstructor(Int_t iDet);
92bffc4d	238	AliVertexer* CreateVertexer();
1f9831ab	239	AliTrackleter* CreateMultFinder();
4b71572b	240	void CleanUp();
24f7a148	241
81d57268	242	Bool_t ParseOutput();
81d57268	243
48c83a1c	244	//==========================================//
af885e0f	245	void WriteAlignmentData(AliESDEvent* esd);
f3a97c86	246
af885e0f	247	void FillRawDataErrorLog(Int_t iEvent, AliESDEvent* esd);
f3a97c86	248
a5fa6165	249	//Quality Assurance
0a035be5	250	// void CheckQA() ;
a5fa6165	251
7167ae53	252	// Plane Efficiency evaluation
	253	Bool_t FinishPlaneEff(); //ultimate tasks related to Plane Eff. evaluation
	254	Bool_t InitPlaneEff(); // initialize what is needed for Plane Eff. evaluation
	255
14dd053c	256	Bool_t InitAliEVE();
	257	void RunAliEVE();
	258
7e88424f	259	Bool_t InitRecoParams(); // init the array with the reconstruciton parameters
	260	Bool_t GetEventInfo(); // fill the event info inside the event loop
	261
	262	const char MatchDetectorList(const char detectorList, UInt_t detectorMask);
	263
61807e09	264	//* Global reconstruction flags *****************
2257f27e	265	Bool_t fRunVertexFinder; // run the vertex finder
a84e2607	266	Bool_t fRunVertexFinderTracks; // run the vertex finder with tracks
bd072da4	267	Bool_t fRunMuonTracking; // run the MUON tracking
d1683eef	268	Bool_t fRunV0Finder; // run the ESD V0 finder
d1683eef	269	Bool_t fRunCascadeFinder; // run the ESD cascade finder
1f9831ab	270	Bool_t fRunMultFinder; // run the trackleter for ITS clusters
1d99986f	271	Bool_t fStopOnError; // stop or continue on errors
07472556	272	Bool_t fStopOnMissingTriggerFile; // stop if the simulated trigger file is absent
1d99986f	273	Bool_t fWriteAlignmentData; // write track space-points flag
1d99986f	274	Bool_t fWriteESDfriend; // write ESD friend flag
b647652d	275	Bool_t fFillTriggerESD; // fill trigger info into ESD
1d99986f	276
7f68891d	277	//* Clean ESD flag and parameters *****************
7f68891d	278	Bool_t fCleanESD; // clean ESD flag
a023d8d8	279	Float_t fV0DCAmax; // max. allowed DCA between V0 daugthers
a023d8d8	280	Float_t fV0CsPmin; // min. allowed cosine of V0 pointing angle
7f68891d	281	Float_t fDmax; // max. allowed transverse impact parameter
	282	Float_t fZmax; // max. allowed longitudinal impact parameter
	283
1d99986f	284	TString fRunLocalReconstruction; // run the local reconstruction for these detectors
b8cd5251	285	TString fRunTracking; // run the tracking for these detectors
596a855f	286	TString fFillESD; // fill ESD for these detectors
e54c9180	287	TString fDeleteRecPoints; // delete recpoints after each event
e54c9180	288	TString fDeleteDigits; // delete digits after each event
7d566c20	289	TString fLoadCDB; // prefetch CDB entries and init reco-params for these detectors
48ce48d1	290	TString fUseTrackingErrorsForAlignment; // for these detectors
596a855f	291	TString fGAliceFileName; // name of the galice file
4b71572b	292	TString fRawInput; // name of input raw-data file or directory
81d57268	293	TString fESDOutput; //! name of output ESD file
	294	TString fProofOutputFileName;//! name of output file in PROOF mode
	295	TString fProofOutputLocation;//! output location in PROOF mode
	296	Bool_t fProofOutputDataset; //! keep output file in PROOF mode in dataset or merge
	297	TString fProofOutputArchive; //! list of file to be kept in output zip archive in PROOF mode
35042093	298	TString fEquipIdMap; // name of file with equipment id map
b26c3770	299	Int_t fFirstEvent; // index of first event to be reconstr.
b26c3770	300	Int_t fLastEvent; // index of last event to be reconstr.
973388c2	301	UInt_t fNumberOfEventsPerFile; // number of events per file in case of raw-data reconstruction
fc01854a	302	Double32_t fFractionFriends; // fraction of ESD friends to be stored
b8cd5251	303	TObjArray fOptions; // options for reconstructor objects
6bae477a	304	Bool_t fLoadAlignFromCDB; // Load alignment data from CDB and apply it to geometry or not
6bae477a	305	TString fLoadAlignData; // Load alignment data from CDB for these detectors
cc9e123e	306	TString fUseHLTData; // Detectors for which the HLT data is used as input
7e88424f	307	AliRunInfo* fRunInfo; // an object which contains essential global conditions information
7e88424f	308	AliEventInfo fEventInfo; // an object which contains essential event information
522fdd91	309	AliTriggerRunScalers* fRunScalers; // an object which contains the trigger counters for xsection
70410f60	310	AliCTPTimeParams* fCTPTimeParams; // an object which contains the trigger delays
c7ff1a33	311	AliCTPTimeParams* fCTPTimeAlign; // an object which contains the CTP (mis)alignment data
596a855f	312	AliRunLoader* fRunLoader; //! current run loader object
b649205a	313	AliRawReader* fRawReader; //! current raw data reader
cc9e123e	314	AliRawReader* fParentRawReader; //! parent raw data reader in case of AliRawReaderHLT
596a855f	315
ac4a7581	316	static const char* fgkDetectorName[kNDetectors]; //! names of detectors
ac4a7581	317	AliReconstructor* fReconstructor[kNDetectors]; //! array of reconstructor objects
4b71572b	318	AliRecoParam fRecoParam; // container for the reco-param objects for detectors
ac4a7581	319	AliLoader* fLoader[kNDetectors]; //! detector loaders
ac4a7581	320	AliTracker* fTracker[kNDetectors]; //! trackers
58e8dc31	321	AliTracker* fSPDTrackleter; //! trackleter [for SPD Plane Efficiency purposes]
f2a195c1	322	AliESDVertex* fDiamondProfileSPD; // (x,y) diamond profile from SPD for AliITSVertexer3D(Z)
f2a195c1	323	AliESDVertex* fDiamondProfile; // (x,y) diamond profile for AliVertexerTracks (ITS+TPC)
43c9dae1	324	AliESDVertex* fDiamondProfileTPC; // (x,y) diamond profile from TPC for AliVertexerTracks
77ba28ba	325	THashTable* fListOfCosmicTriggers; // list of cosmic triggers as defined by trigger coordination
59697224	326
44e45fac	327	AliGRPObject* fGRPData; // Data from the GRP/GRP/Data CDB folder
444753c6	328
4b71572b	329	TObjArray* fAlignObjArray; //! array with the alignment objects to be applied to the geometry
98937d93	330
4b71572b	331	TString fCDBUri; //! Uri of the default CDB storage
f1c1204d	332	TString fQARefUri; //! Uri of the default QA reference storage
4b71572b	333	TObjArray fSpecCDBUri; //! Array with detector specific CDB storages
795e4a22	334	Bool_t fInitCDBCalled; //! flag to check if CDB storages are already initialized
989744a6	335	Bool_t fCDBSnapshotMode; //! flag true if we are setting the CDB Manager in snapshot mode
795e4a22	336	Bool_t fSetRunNumberFromDataCalled; //! flag to check if run number is already loaded from run loader
024cf675	337
a5fa6165	338	//Quality Assurance
4e25ac79	339	Int_t fQACycles[ AliQAv1::kNDET]; // # events over which QA data are accumulated
4e25ac79	340	Bool_t fQAWriteExpert[AliQAv1::kNDET]; // Flag to save or not expert QA data
30bbd491	341	TString fQADetectors ; // list of detectors to be QA'ed
30bbd491	342	TString fQATasks ; // list of QA tasks to be performed
	343	Bool_t fRunQA ; // Run QA flag
	344	Bool_t fRunGlobalQA; // Run global QA flag
30bbd491	345	Bool_t fSameQACycle; //! open a new QA data file or not
f1c1204d	346	Bool_t fInitQACalled; //! control of QA intialisation
75373542	347	Bool_t fWriteQAExpertData ; //! decides wheter or not to write experts QA data; true by default
75373542	348
7167ae53	349	// Plane Efficiency Evaluation
7167ae53	350	Bool_t fRunPlaneEff ; // Evaluate Plane Efficiency
a5fa6165	351
21a3aa09	352	// New members needed in order to split Run method
	353	// into InitRun,RunEvent,FinishRun methods
	354	AliESDEvent* fesd; //! Pointer to the ESD event object
	355	AliESDEvent* fhltesd; //! Pointer to the HLT ESD event object
	356	AliESDfriend* fesdf; //! Pointer to the ESD friend object
	357	TFile* ffile; //! Pointer to the ESD file
ee7c441c	358	TFile* ffileF; //! Pointer to the ESD friend file
21a3aa09	359	TTree* ftree; //! Pointer to the ESD tree
ee7c441c	360	TTree* ftreeF; //! Pointer to the ESD friend tree
21a3aa09	361	TTree* fhlttree; //! Pointer to the HLT ESD tree
21a3aa09	362	AliVertexerTracks* ftVertexer; //! Pointer to the vertexer based on ESD tracks
21a3aa09	363	Bool_t fIsNewRunLoader; // galice.root created from scratch (real raw data case)
14dd053c	364	Bool_t fRunAliEVE; // Run AliEVE or not
3d84ad67	365	Double_t fBeamInt[2][2]; //! mean beam intensities from AliLHCData
3d84ad67	366
4b71572b	367	TTree* fChain; //! The raw-data chain in case of AliRawReaderChain
4b71572b	368
f00558b6	369	// Counters used in WriteESDfriend()
	370	Int_t fNall; //! Number of reconstructed events
	371	Int_t fNspecie; //! Number of events, selected by IsCosmicOrCalibSpecie
	372	Int_t fSspecie; //! Number of events, sampled from fNspecie
	373	Int_t fNhighPt; //! Number of events, selected by IsHighPt
	374	Int_t fShighPt; //! Number of events, sampled from fNhighPt
f9fc20b4	375
	376	// Upgrade detector reconstruction
	377	TString fUpgradeModule;
	378	Bool_t fUpgradeMask[kNDetectors];
42457748	379	// Connect an analysis manager in the event loop
	380	TString fAnalysisMacro; // Full path to a macro creating an analysis manager train
	381	AliAnalysisManager *fAnalysis; //! Analysis manager
	382	AliRecoInputHandler *fRecoHandler; //! Input handler adapted for reconstruction
764daca3	383	TString fDeclTriggerClasses; // Declared defined trigger classes
30b916f7	384	//
	385	Bool_t fStopped; // flag that reco is stopped due to the limited resources
	386	Int_t fMaxRSS; // max RSS memory, MB
	387	Int_t fMaxVMEM; // max VMEM memory, MB
	388	static const char* fgkStopEvFName; // filename for stop.event stamp
	389	//
07472556	390	ClassDef(AliReconstruction, 45) // class for running the reconstruction
596a855f	391	};
	392
	393	#endif