Corrected UInt_t <-> Int_t conversion
[u/mrichter/AliRoot.git] / TPC / AliTPCCalROC.cxx
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07627591 1/**************************************************************************
2 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
3 * *
4 * Author: The ALICE Off-line Project. *
5 * Contributors are mentioned in the code where appropriate. *
6 * *
7 * Permission to use, copy, modify and distribute this software and its *
8 * documentation strictly for non-commercial purposes is hereby granted *
9 * without fee, provided that the above copyright notice appears in all *
10 * copies and that both the copyright notice and this permission notice *
11 * appear in the supporting documentation. The authors make no claims *
12 * about the suitability of this software for any purpose. It is *
13 * provided "as is" without express or implied warranty. *
14 **************************************************************************/
15
16
17///////////////////////////////////////////////////////////////////////////////
18// //
a6d2bd0c 19// Calibration base class for a single ROC //
20// Contains one float value per pad //
c5bbaa2c 21// mapping of the pads taken form AliTPCROC //
07627591 22// //
23///////////////////////////////////////////////////////////////////////////////
24
72fbbc82 25//
26// ROOT includes
27//
07627591 28#include "TMath.h"
c5bbaa2c 29#include "TClass.h"
30#include "TFile.h"
184bcc16 31#include "TH1F.h"
2e9bedc9 32#include "TH2F.h"
72fbbc82 33#include "TArrayI.h"
9cc76bba 34
72fbbc82 35//
36//
37#include "AliTPCCalROC.h"
184bcc16 38#include "AliMathBase.h"
e0bc0200 39
ca5dca67 40#include "TRandom3.h" // only needed by the AliTPCCalROCTest() method
41
07627591 42ClassImp(AliTPCCalROC)
07627591 43
44
45//_____________________________________________________________________________
179c6296 46AliTPCCalROC::AliTPCCalROC()
f691a5e2 47 :TNamed(),
179c6296 48 fSector(0),
49 fNChannels(0),
50 fNRows(0),
a5ade541 51 fkIndexes(0),
179c6296 52 fData(0)
07627591 53{
54 //
55 // Default constructor
56 //
179c6296 57
07627591 58}
59
60//_____________________________________________________________________________
179c6296 61AliTPCCalROC::AliTPCCalROC(UInt_t sector)
f691a5e2 62 :TNamed(),
179c6296 63 fSector(0),
64 fNChannels(0),
65 fNRows(0),
a5ade541 66 fkIndexes(0),
179c6296 67 fData(0)
07627591 68{
69 //
70 // Constructor that initializes a given sector
71 //
07627591 72 fSector = sector;
c5bbaa2c 73 fNChannels = AliTPCROC::Instance()->GetNChannels(fSector);
74 fNRows = AliTPCROC::Instance()->GetNRows(fSector);
a5ade541 75 fkIndexes = AliTPCROC::Instance()->GetRowIndexes(fSector);
c5bbaa2c 76 fData = new Float_t[fNChannels];
77 for (UInt_t idata = 0; idata< fNChannels; idata++) fData[idata] = 0.;
07627591 78}
79
80//_____________________________________________________________________________
179c6296 81AliTPCCalROC::AliTPCCalROC(const AliTPCCalROC &c)
f691a5e2 82 :TNamed(c),
179c6296 83 fSector(0),
84 fNChannels(0),
85 fNRows(0),
a5ade541 86 fkIndexes(0),
179c6296 87 fData(0)
07627591 88{
89 //
90 // AliTPCCalROC copy constructor
91 //
92 fSector = c.fSector;
c5bbaa2c 93 fNChannels = AliTPCROC::Instance()->GetNChannels(fSector);
94 fNRows = AliTPCROC::Instance()->GetNRows(fSector);
a5ade541 95 fkIndexes = AliTPCROC::Instance()->GetRowIndexes(fSector);
c5bbaa2c 96 //
97 fData = new Float_t[fNChannels];
98 for (UInt_t idata = 0; idata< fNChannels; idata++) fData[idata] = c.fData[idata];
07627591 99}
179c6296 100//____________________________________________________________________________
101AliTPCCalROC & AliTPCCalROC::operator =(const AliTPCCalROC & param)
102{
103 //
104 // assignment operator - dummy
105 //
106 fData=param.fData;
107 return (*this);
108}
109
07627591 110
111//_____________________________________________________________________________
112AliTPCCalROC::~AliTPCCalROC()
113{
114 //
115 // AliTPCCalROC destructor
116 //
07627591 117 if (fData) {
118 delete [] fData;
119 fData = 0;
120 }
121}
122
c5bbaa2c 123
124
125void AliTPCCalROC::Streamer(TBuffer &R__b)
126{
a6d2bd0c 127 //
c5bbaa2c 128 // Stream an object of class AliTPCCalROC.
a6d2bd0c 129 //
c5bbaa2c 130 if (R__b.IsReading()) {
131 AliTPCCalROC::Class()->ReadBuffer(R__b, this);
a5ade541 132 fkIndexes = AliTPCROC::Instance()->GetRowIndexes(fSector);
c5bbaa2c 133 } else {
134 AliTPCCalROC::Class()->WriteBuffer(R__b,this);
135 }
136}
137
a6d2bd0c 138
139// algebra fuctions:
43b569c6 140
141void AliTPCCalROC::Add(Float_t c1){
142 //
a6d2bd0c 143 // add c1 to each channel of the ROC
43b569c6 144 //
145 for (UInt_t idata = 0; idata< fNChannels; idata++) fData[idata]+=c1;
146}
a6d2bd0c 147
148
43b569c6 149void AliTPCCalROC::Multiply(Float_t c1){
150 //
a6d2bd0c 151 // multiply each channel of the ROC with c1
43b569c6 152 //
153 for (UInt_t idata = 0; idata< fNChannels; idata++) fData[idata]*=c1;
154}
155
a6d2bd0c 156
43b569c6 157void AliTPCCalROC::Add(const AliTPCCalROC * roc, Double_t c1){
158 //
a6d2bd0c 159 // multiply AliTPCCalROC roc by c1 and add each channel to the coresponing channel in the ROC
160 // - pad by pad
43b569c6 161 //
162 for (UInt_t idata = 0; idata< fNChannels; idata++){
163 fData[idata]+=roc->fData[idata]*c1;
164 }
165}
166
167
168void AliTPCCalROC::Multiply(const AliTPCCalROC* roc) {
169 //
a6d2bd0c 170 // multiply each channel of the ROC with the coresponding channel of 'roc'
171 // - pad by pad -
43b569c6 172 //
173 for (UInt_t idata = 0; idata< fNChannels; idata++){
174 fData[idata]*=roc->fData[idata];
175 }
176}
177
178
179void AliTPCCalROC::Divide(const AliTPCCalROC* roc) {
180 //
a6d2bd0c 181 // divide each channel of the ROC by the coresponding channel of 'roc'
182 // - pad by pad -
43b569c6 183 //
184 Float_t kEpsilon=0.00000000000000001;
185 for (UInt_t idata = 0; idata< fNChannels; idata++){
186 if (TMath::Abs(roc->fData[idata])>kEpsilon)
187 fData[idata]/=roc->fData[idata];
188 }
189}
190
a5ade541 191Double_t AliTPCCalROC::GetMean(AliTPCCalROC *const outlierROC) const {
a6d2bd0c 192 //
193 // returns the mean value of the ROC
194 // pads with value != 0 in outlierROC are not used for the calculation
9cc76bba 195 // return 0 if no data is accepted by the outlier cuts
a6d2bd0c 196 //
ca5dca67 197 if (!outlierROC) return TMath::Mean(fNChannels, fData);
198 Double_t *ddata = new Double_t[fNChannels];
a5ade541 199 Int_t nPoints = 0;
ca5dca67 200 for (UInt_t i=0;i<fNChannels;i++) {
201 if (!(outlierROC->GetValue(i))) {
a5ade541 202 ddata[nPoints]= fData[i];
203 nPoints++;
ca5dca67 204 }
205 }
9cc76bba 206 Double_t mean = 0;
a5ade541 207 if(nPoints>0)
208 mean = TMath::Mean(nPoints, ddata);
ca5dca67 209 delete [] ddata;
210 return mean;
211}
43b569c6 212
a5ade541 213Double_t AliTPCCalROC::GetMedian(AliTPCCalROC *const outlierROC) const {
a6d2bd0c 214 //
215 // returns the median value of the ROC
216 // pads with value != 0 in outlierROC are not used for the calculation
9cc76bba 217 // return 0 if no data is accepted by the outlier cuts
a6d2bd0c 218 //
ca5dca67 219 if (!outlierROC) return TMath::Median(fNChannels, fData);
220 Double_t *ddata = new Double_t[fNChannels];
a5ade541 221 Int_t nPoints = 0;
ca5dca67 222 for (UInt_t i=0;i<fNChannels;i++) {
223 if (!(outlierROC->GetValue(i))) {
a5ade541 224 ddata[nPoints]= fData[i];
225 nPoints++;
ca5dca67 226 }
227 }
9cc76bba 228 Double_t median = 0;
a5ade541 229 if(nPoints>0)
230 median = TMath::Median(nPoints, ddata);
ca5dca67 231 delete [] ddata;
9cc76bba 232 return median;
ca5dca67 233}
43b569c6 234
a5ade541 235Double_t AliTPCCalROC::GetRMS(AliTPCCalROC *const outlierROC) const {
a6d2bd0c 236 //
237 // returns the RMS value of the ROC
238 // pads with value != 0 in outlierROC are not used for the calculation
9cc76bba 239 // return 0 if no data is accepted by the outlier cuts
a6d2bd0c 240 //
ca5dca67 241 if (!outlierROC) return TMath::RMS(fNChannels, fData);
242 Double_t *ddata = new Double_t[fNChannels];
a5ade541 243 Int_t nPoints = 0;
ca5dca67 244 for (UInt_t i=0;i<fNChannels;i++) {
245 if (!(outlierROC->GetValue(i))) {
a5ade541 246 ddata[nPoints]= fData[i];
247 nPoints++;
ca5dca67 248 }
249 }
9cc76bba 250 Double_t rms = 0;
a5ade541 251 if(nPoints>0)
252 rms = TMath::RMS(nPoints, ddata);
ca5dca67 253 delete [] ddata;
9cc76bba 254 return rms;
ca5dca67 255}
c5bbaa2c 256
a5ade541 257Double_t AliTPCCalROC::GetLTM(Double_t *const sigma, Double_t fraction, AliTPCCalROC *const outlierROC){
184bcc16 258 //
a6d2bd0c 259 // returns the LTM and sigma
260 // pads with value != 0 in outlierROC are not used for the calculation
9cc76bba 261 // return 0 if no data is accepted by the outlier cuts
184bcc16 262 //
263 Double_t *ddata = new Double_t[fNChannels];
a5ade541 264 UInt_t nPoints = 0;
ca5dca67 265 for (UInt_t i=0;i<fNChannels;i++) {
266 if (!outlierROC || !(outlierROC->GetValue(i))) {
a5ade541 267 ddata[nPoints]= fData[i];
268 nPoints++;
ca5dca67 269 }
270 }
9cc76bba 271
272 Double_t ltm =0, lsigma=0;
a5ade541 273 if(nPoints>0) {
274 Int_t hh = TMath::Min(TMath::Nint(fraction *nPoints), Int_t(nPoints));
275 AliMathBase::EvaluateUni(nPoints,ddata, ltm, lsigma, hh);
9cc76bba 276 if (sigma) *sigma=lsigma;
277 }
278
184bcc16 279 delete [] ddata;
9cc76bba 280 return ltm;
184bcc16 281}
c5bbaa2c 282
184bcc16 283TH1F * AliTPCCalROC::MakeHisto1D(Float_t min, Float_t max,Int_t type){
2e9bedc9 284 //
184bcc16 285 // make 1D histo
286 // type -1 = user defined range
287 // 0 = nsigma cut nsigma=min
288 // 1 = delta cut around median delta=min
a6d2bd0c 289 //
184bcc16 290 if (type>=0){
291 if (type==0){
292 // nsigma range
293 Float_t mean = GetMean();
294 Float_t sigma = GetRMS();
295 Float_t nsigma = TMath::Abs(min);
296 min = mean-nsigma*sigma;
297 max = mean+nsigma*sigma;
298 }
299 if (type==1){
300 // fixed range
301 Float_t mean = GetMedian();
302 Float_t delta = min;
303 min = mean-delta;
304 max = mean+delta;
305 }
306 if (type==2){
307 //
308 // LTM mean +- nsigma
309 //
310 Double_t sigma;
311 Float_t mean = GetLTM(&sigma,max);
312 sigma*=min;
313 min = mean-sigma;
314 max = mean+sigma;
315 }
316 }
5dbad769 317 TString name=Form("%s ROC 1D%d",GetTitle(),fSector);
318 TH1F * his = new TH1F(name.Data(),name.Data(),100, min,max);
184bcc16 319 for (UInt_t irow=0; irow<fNRows; irow++){
320 UInt_t npads = (Int_t)GetNPads(irow);
e0bc0200 321 for (UInt_t ipad=0; ipad<npads; ipad++){
184bcc16 322 his->Fill(GetValue(irow,ipad));
323 }
324 }
325 return his;
326}
327
328
329
330TH2F * AliTPCCalROC::MakeHisto2D(Float_t min, Float_t max,Int_t type){
2e9bedc9 331 //
184bcc16 332 // make 2D histo
333 // type -1 = user defined range
334 // 0 = nsigma cut nsigma=min
335 // 1 = delta cut around median delta=min
a6d2bd0c 336 //
184bcc16 337 if (type>=0){
338 if (type==0){
339 // nsigma range
340 Float_t mean = GetMean();
341 Float_t sigma = GetRMS();
342 Float_t nsigma = TMath::Abs(min);
343 min = mean-nsigma*sigma;
344 max = mean+nsigma*sigma;
345 }
346 if (type==1){
347 // fixed range
348 Float_t mean = GetMedian();
349 Float_t delta = min;
350 min = mean-delta;
351 max = mean+delta;
352 }
353 if (type==2){
354 Double_t sigma;
355 Float_t mean = GetLTM(&sigma,max);
356 sigma*=min;
357 min = mean-sigma;
358 max = mean+sigma;
359
360 }
361 }
2e9bedc9 362 UInt_t maxPad = 0;
363 for (UInt_t irow=0; irow<fNRows; irow++){
364 if (GetNPads(irow)>maxPad) maxPad = GetNPads(irow);
365 }
5dbad769 366
367 TString name=Form("%s ROC%d",GetTitle(),fSector);
368 TH2F * his = new TH2F(name.Data(),name.Data(),fNRows+10,-5, fNRows+5, maxPad+10, -(Int_t(maxPad/2))-5, maxPad/2+5);
2e9bedc9 369 for (UInt_t irow=0; irow<fNRows; irow++){
370 UInt_t npads = (Int_t)GetNPads(irow);
e0bc0200 371 for (UInt_t ipad=0; ipad<npads; ipad++){
2e9bedc9 372 his->Fill(irow+0.5,Int_t(ipad)-Int_t(npads/2)+0.5,GetValue(irow,ipad));
373 }
374 }
184bcc16 375 his->SetMaximum(max);
376 his->SetMinimum(min);
377 return his;
378}
379
380TH2F * AliTPCCalROC::MakeHistoOutliers(Float_t delta, Float_t fraction, Int_t type){
381 //
382 // Make Histogram with outliers
383 // mode = 0 - sigma cut used
384 // mode = 1 - absolute cut used
385 // fraction - fraction of values used to define sigma
386 // delta - in mode 0 - nsigma cut
387 // mode 1 - delta cut
a6d2bd0c 388 //
184bcc16 389 Double_t sigma;
390 Float_t mean = GetLTM(&sigma,fraction);
391 if (type==0) delta*=sigma;
392 UInt_t maxPad = 0;
393 for (UInt_t irow=0; irow<fNRows; irow++){
394 if (GetNPads(irow)>maxPad) maxPad = GetNPads(irow);
395 }
396
5dbad769 397 TString name=Form("%s ROC Outliers%d",GetTitle(),fSector);
398 TH2F * his = new TH2F(name.Data(),name.Data(),fNRows+10,-5, fNRows+5, maxPad+10, -(Int_t(maxPad/2))-5, maxPad/2+5);
184bcc16 399 for (UInt_t irow=0; irow<fNRows; irow++){
400 UInt_t npads = (Int_t)GetNPads(irow);
e0bc0200 401 for (UInt_t ipad=0; ipad<npads; ipad++){
184bcc16 402 if (TMath::Abs(GetValue(irow,ipad)-mean)>delta)
403 his->Fill(irow+0.5,Int_t(ipad)-Int_t(npads/2)+0.5,1);
404 }
405 }
406 return his;
407}
408
409
410
411void AliTPCCalROC::Draw(Option_t* opt){
412 //
413 // create histogram with values and draw it
414 //
415 TH1 * his=0;
416 TString option=opt;
417 option.ToUpper();
418 if (option.Contains("1D")){
419 his = MakeHisto1D();
420 }
421 else{
422 his = MakeHisto2D();
423 }
2e9bedc9 424 his->Draw(option);
425}
426
427
184bcc16 428
429
430
ca5dca67 431void AliTPCCalROC::Test() {
c5bbaa2c 432 //
ca5dca67 433 // example function to show functionality and test AliTPCCalROC
c5bbaa2c 434 //
ca5dca67 435
436 Float_t kEpsilon=0.00001;
437
438 // create CalROC with defined values
c5bbaa2c 439 AliTPCCalROC roc0(0);
440 for (UInt_t irow = 0; irow <roc0.GetNrows(); irow++){
441 for (UInt_t ipad = 0; ipad <roc0.GetNPads(irow); ipad++){
442 Float_t value = irow+ipad/1000.;
443 roc0.SetValue(irow,ipad,value);
444 }
445 }
ca5dca67 446
447 // copy CalROC, readout values and compare to original
c5bbaa2c 448 AliTPCCalROC roc1(roc0);
449 for (UInt_t irow = 0; irow <roc1.GetNrows(); irow++){
450 for (UInt_t ipad = 0; ipad <roc1.GetNPads(irow); ipad++){
451 Float_t value = irow+ipad/1000.;
452 if (roc1.GetValue(irow,ipad)!=value){
ca5dca67 453 printf("Read/Write error\trow=%d\tpad=%d\n",irow,ipad);
c5bbaa2c 454 }
455 }
ca5dca67 456 }
457
458 // write original CalROC to file
c5bbaa2c 459 TFile f("calcTest.root","recreate");
460 roc0.Write("Roc0");
461 AliTPCCalROC * roc2 = (AliTPCCalROC*)f.Get("Roc0");
462 f.Close();
ca5dca67 463
464 // read CalROC from file and compare to original CalROC
c5bbaa2c 465 for (UInt_t irow = 0; irow <roc0.GetNrows(); irow++){
466 if (roc0.GetNPads(irow)!=roc2->GetNPads(irow))
467 printf("NPads - Read/Write error\trow=%d\n",irow);
468 for (UInt_t ipad = 0; ipad <roc1.GetNPads(irow); ipad++){
469 Float_t value = irow+ipad/1000.;
470 if (roc2->GetValue(irow,ipad)!=value){
ca5dca67 471 printf("Read/Write error\trow=%d\tpad=%d\n",irow,ipad);
c5bbaa2c 472 }
473 }
ca5dca67 474 }
475
476 //
477 // Algebra Tests
478 //
479
480 // Add constant
481 AliTPCCalROC roc3(roc0);
482 roc3.Add(1.5);
483 for (UInt_t irow = 0; irow <roc3.GetNrows(); irow++){
484 for (UInt_t ipad = 0; ipad <roc3.GetNPads(irow); ipad++){
485 Float_t value = irow+ipad/1000. + 1.5;
486 if (TMath::Abs(roc3.GetValue(irow,ipad)-value) > kEpsilon){
487 printf("Add constant - error\trow=%d\tpad=%d\n",irow,ipad);
488 }
489 }
490 }
491
492 // Add another CalROC
493 AliTPCCalROC roc4(roc0);
494 roc4.Add(&roc0, -1.5);
495 for (UInt_t irow = 0; irow <roc4.GetNrows(); irow++){
496 for (UInt_t ipad = 0; ipad <roc4.GetNPads(irow); ipad++){
497 Float_t value = irow+ipad/1000. - 1.5 * (irow+ipad/1000.);
498 if (TMath::Abs(roc4.GetValue(irow,ipad)-value) > kEpsilon){
499 printf("Add CalROC - error\trow=%d\tpad=%d\n",irow,ipad);
500 }
501 }
502 }
503
504 // Multiply with constant
505 AliTPCCalROC roc5(roc0);
506 roc5.Multiply(-1.4);
507 for (UInt_t irow = 0; irow <roc5.GetNrows(); irow++){
508 for (UInt_t ipad = 0; ipad <roc5.GetNPads(irow); ipad++){
509 Float_t value = (irow+ipad/1000.) * (-1.4);
510 if (TMath::Abs(roc5.GetValue(irow,ipad)-value) > kEpsilon){
511 printf("Multiply with constant - error\trow=%d\tpad=%d\n",irow,ipad);
512 }
513 }
514 }
515
516 // Multiply another CalROC
517 AliTPCCalROC roc6(roc0);
518 roc6.Multiply(&roc0);
519 for (UInt_t irow = 0; irow <roc6.GetNrows(); irow++){
520 for (UInt_t ipad = 0; ipad <roc6.GetNPads(irow); ipad++){
521 Float_t value = (irow+ipad/1000.) * (irow+ipad/1000.);
522 if (TMath::Abs(roc6.GetValue(irow,ipad)-value) > kEpsilon*100){
523 printf("Multiply with CalROC - error\trow=%d\tpad=%d\n",irow,ipad);
524 }
525 }
526 }
527
528
529 // Divide by CalROC
530 AliTPCCalROC roc7(roc0);
531 roc7.Divide(&roc0);
532 for (UInt_t irow = 0; irow <roc7.GetNrows(); irow++){
533 for (UInt_t ipad = 0; ipad <roc7.GetNPads(irow); ipad++){
534 Float_t value = 1.;
535 if (irow+ipad == 0) value = roc0.GetValue(irow,ipad);
536 if (TMath::Abs(roc7.GetValue(irow,ipad)-value) > kEpsilon){
537 printf("Multiply with CalROC - error\trow=%d\tpad=%d\n",irow,ipad);
538 }
539 }
540 }
541
542 //
543 // Statistics Test
544 //
545
546 // create CalROC with defined values
547 TRandom3 rnd(0);
548 AliTPCCalROC sroc0(0);
549 for (UInt_t ichannel = 0; ichannel < sroc0.GetNchannels(); ichannel++){
550 Float_t value = rnd.Gaus(10., 2.);
551 sroc0.SetValue(ichannel,value);
552 }
553
554 printf("Mean (should be close to 10): %f\n", sroc0.GetMean());
555 printf("RMS (should be close to 2): %f\n", sroc0.GetRMS());
556 printf("Median (should be close to 10): %f\n", sroc0.GetMedian());
557 printf("LTM (should be close to 10): %f\n", sroc0.GetLTM());
558
559 //AliTPCCalROC* sroc1 = sroc0.LocalFit(4, 8);
560
561 //delete sroc1;
562
563// std::cout << TMath::Abs(roc5.GetValue(irow,ipad)-value) << std::endl;
c5bbaa2c 564}
565
72fbbc82 566
a6d2bd0c 567AliTPCCalROC * AliTPCCalROC::LocalFit(Int_t rowRadius, Int_t padRadius, AliTPCCalROC* ROCoutliers, Bool_t robust, Double_t chi2Threshold, Double_t robustFraction) {
72fbbc82 568 //
569 // MakeLocalFit - smoothing
a6d2bd0c 570 // returns a AliTPCCalROC with smoothed data
571 // rowRadius and padRadius specifies a window around a given pad.
572 // The data of this window are fitted with a parabolic function.
573 // This function is evaluated at the pad's position.
574 // At the edges the window is shifted, so that the specified pad is not anymore in the center of the window.
72fbbc82 575 // rowRadius - radius - rows to be used for smoothing
576 // padradius - radius - pads to be used for smoothing
577 // ROCoutlier - map of outliers - pads not to be used for local smoothing
578 // robust - robust method of fitting - (much slower)
a6d2bd0c 579 // chi2Threshold: Threshold for chi2 when EvalRobust is called
580 // robustFraction: Fraction of data that will be used in EvalRobust
581 //
a5ade541 582 AliTPCCalROC * xROCfitted = new AliTPCCalROC(fSector);
a6d2bd0c 583 TLinearFitter fitterQ(6,"hyp5");
584 // TLinearFitter fitterQ(6,"x0++x1++x2++x3++x4++x5");
72fbbc82 585 fitterQ.StoreData(kTRUE);
f116e22c 586 for (UInt_t row=0; row < GetNrows(); row++) {
72fbbc82 587 //std::cout << "Entering row " << row << " of " << GetNrows() << " @ sector "<< fSector << " for local fitting... "<< std::endl;
f116e22c 588 for (UInt_t pad=0; pad < GetNPads(row); pad++)
a5ade541 589 xROCfitted->SetValue(row, pad, GetNeighbourhoodValue(&fitterQ, row, pad, rowRadius, padRadius, ROCoutliers, robust, chi2Threshold, robustFraction));
72fbbc82 590 }
a5ade541 591 return xROCfitted;
72fbbc82 592}
593
594
a5ade541 595Double_t AliTPCCalROC::GetNeighbourhoodValue(TLinearFitter* fitterQ, Int_t row, Int_t pad, Int_t rRadius, Int_t pRadius, AliTPCCalROC *const ROCoutliers, Bool_t robust, Double_t chi2Threshold, Double_t robustFraction) {
a6d2bd0c 596 //
597 // AliTPCCalROC::GetNeighbourhoodValue - smoothing - PRIVATE
598 // in this function the fit for LocalFit is done
72fbbc82 599 //
72fbbc82 600
601 fitterQ->ClearPoints();
602 TVectorD fitParam(6);
603 Int_t npoints=0;
604 Double_t xx[6];
605 Float_t dlx, dly;
606 Float_t lPad[3] = {0};
607 Float_t localXY[3] = {0};
608
609 AliTPCROC* tpcROCinstance = AliTPCROC::Instance();
610 tpcROCinstance->GetPositionLocal(fSector, row, pad, lPad); // calculate position lPad by pad and row number
611
612 TArrayI *neighbourhoodRows = 0;
613 TArrayI *neighbourhoodPads = 0;
ca5dca67 614
615 //std::cerr << "Trying to get neighbourhood for row " << row << ", pad " << pad << std::endl;
72fbbc82 616 GetNeighbourhood(neighbourhoodRows, neighbourhoodPads, row, pad, rRadius, pRadius);
ca5dca67 617 //std::cerr << "Got neighbourhood for row " << row << ", pad " << pad << std::endl;
72fbbc82 618
619 Int_t r, p;
620 for (Int_t i=0; i < (2*rRadius+1)*(2*pRadius+1); i++) {
621 r = neighbourhoodRows->At(i);
622 p = neighbourhoodPads->At(i);
ca5dca67 623 if (r == -1 || p == -1) continue; // window is bigger than ROC
72fbbc82 624 tpcROCinstance->GetPositionLocal(fSector, r, p, localXY); // calculate position localXY by pad and row number
625 dlx = lPad[0] - localXY[0];
626 dly = lPad[1] - localXY[1];
a6d2bd0c 627 //xx[0] = 1;
72fbbc82 628 xx[1] = dlx;
629 xx[2] = dly;
630 xx[3] = dlx*dlx;
631 xx[4] = dly*dly;
632 xx[5] = dlx*dly;
ca5dca67 633 if (!ROCoutliers || ROCoutliers->GetValue(r,p) != 1) {
a6d2bd0c 634 fitterQ->AddPoint(&xx[1], GetValue(r, p), 1);
72fbbc82 635 npoints++;
636 }
637 }
ca5dca67 638
639 delete neighbourhoodRows;
640 delete neighbourhoodPads;
641
72fbbc82 642 if (npoints < 0.5 * ((2*rRadius+1)*(2*pRadius+1)) ) {
643 // std::cerr << "Too few data points for fitting @ row " << row << ", pad " << pad << " in sector " << fSector << std::endl;
644 return 0.; // for diagnostic
645 }
646 fitterQ->Eval();
647 fitterQ->GetParameters(fitParam);
648 Float_t chi2Q = 0;
a6d2bd0c 649 if (robust) chi2Q = fitterQ->GetChisquare()/(npoints-6.);
72fbbc82 650 //if (robust) chi2Q = fitterQ->GetChisquare()/(npoints-6.);
a6d2bd0c 651 if (robust && chi2Q > chi2Threshold) {
72fbbc82 652 //std::cout << "robust fitter called... " << std::endl;
a6d2bd0c 653 fitterQ->EvalRobust(robustFraction);
72fbbc82 654 fitterQ->GetParameters(fitParam);
655 }
656 Double_t value = fitParam[0];
657
72fbbc82 658 //if (value < 0) std::cerr << "negative fit-value " << value << " in sector "<< this->fSector << " @ row: " << row << " and pad: " << pad << ", with fitter Chi2 = " << chi2Q << std::endl;
72fbbc82 659 return value;
660}
661
662
663
664
665void AliTPCCalROC::GetNeighbourhood(TArrayI* &rowArray, TArrayI* &padArray, Int_t row, Int_t pad, Int_t rRadius, Int_t pRadius) {
666 //
a6d2bd0c 667 // AliTPCCalROC::GetNeighbourhood - PRIVATE
668 // in this function the window for LocalFit is determined
72fbbc82 669 //
670 rowArray = new TArrayI((2*rRadius+1)*(2*pRadius+1));
671 padArray = new TArrayI((2*rRadius+1)*(2*pRadius+1));
72fbbc82 672
673 Int_t rmin = row - rRadius;
f116e22c 674 UInt_t rmax = row + rRadius;
72fbbc82 675
676 // if window goes out of ROC
677 if (rmin < 0) {
678 rmax = rmax - rmin;
679 rmin = 0;
680 }
681 if (rmax >= GetNrows()) {
682 rmin = rmin - (rmax - GetNrows()+1);
683 rmax = GetNrows() - 1;
684 if (rmin < 0 ) rmin = 0; // if the window is bigger than the ROC
685 }
686
687 Int_t pmin, pmax;
688 Int_t i = 0;
689
f116e22c 690 for (UInt_t r = rmin; r <= rmax; r++) {
72fbbc82 691 pmin = pad - pRadius;
692 pmax = pad + pRadius;
693 if (pmin < 0) {
694 pmax = pmax - pmin;
695 pmin = 0;
696 }
9389f9a4 697 if (pmax >= (Int_t)GetNPads(r)) {
72fbbc82 698 pmin = pmin - (pmax - GetNPads(r)+1);
699 pmax = GetNPads(r) - 1;
700 if (pmin < 0 ) pmin = 0; // if the window is bigger than the ROC
701 }
702 for (Int_t p = pmin; p <= pmax; p++) {
ca5dca67 703 (*rowArray)[i] = r;
704 (*padArray)[i] = p;
72fbbc82 705 i++;
706 }
707 }
708 for (Int_t j = i; j < rowArray->GetSize(); j++){ // unused padArray-entries, in the case that the window is bigger than the ROC
709 //std::cout << "trying to write -1" << std::endl;
ca5dca67 710 (*rowArray)[j] = -1;
711 (*padArray)[j] = -1;
72fbbc82 712 //std::cout << "writing -1" << std::endl;
ca5dca67 713 }
72fbbc82 714}
715
716
f116e22c 717
b233e5e9 718void AliTPCCalROC::GlobalFit(const AliTPCCalROC* ROCoutliers, Bool_t robust, TVectorD &fitParam, TMatrixD &covMatrix, Float_t & chi2, Int_t fitType, Double_t chi2Threshold, Double_t robustFraction, Double_t err){
a6d2bd0c 719 //
720 // Makes a GlobalFit for the given secotr and return fit-parameters, covariance and chi2
721 // The origin of the fit function is the center of the ROC!
722 // fitType == 0: fit plane function
723 // fitType == 1: fit parabolic function
724 // ROCoutliers - pads with value !=0 are not used in fitting procedure
725 // chi2Threshold: Threshold for chi2 when EvalRobust is called
726 // robustFraction: Fraction of data that will be used in EvalRobust
b233e5e9 727 // err: error of the data points
f116e22c 728 //
f116e22c 729 TLinearFitter* fitterG = 0;
730 Double_t xx[6];
731
b233e5e9 732 if (fitType == 1) {
f116e22c 733 fitterG = new TLinearFitter (6,"x0++x1++x2++x3++x4++x5");
b233e5e9 734 fitParam.ResizeTo(6);
735 covMatrix.ResizeTo(6,6);
736 } else {
f116e22c 737 fitterG = new TLinearFitter(3,"x0++x1++x2");
b233e5e9 738 fitParam.ResizeTo(3);
739 covMatrix.ResizeTo(3,3);
740 }
92e56aeb 741 fitterG->StoreData(kTRUE);
f116e22c 742 fitterG->ClearPoints();
743 Int_t npoints=0;
744
745 Float_t dlx, dly;
746 Float_t centerPad[3] = {0};
747 Float_t localXY[3] = {0};
748
749 AliTPCROC* tpcROCinstance = AliTPCROC::Instance();
750 tpcROCinstance->GetPositionLocal(fSector, GetNrows()/2, GetNPads(GetNrows()/2)/2, centerPad); // calculate center of ROC
751
752 // loop over all channels and read data into fitterG
b233e5e9 753 for (UInt_t irow = 0; irow < GetNrows(); irow++) {
754 for (UInt_t ipad = 0; ipad < GetNPads(irow); ipad++) {
755 // fill fitterG
756 if (ROCoutliers && ROCoutliers->GetValue(irow, ipad) != 0) continue;
757 tpcROCinstance->GetPositionLocal(fSector, irow, ipad, localXY); // calculate position localXY by pad and row number
758 dlx = localXY[0] - centerPad[0];
759 dly = localXY[1] - centerPad[1];
760 xx[0] = 1;
761 xx[1] = dlx;
762 xx[2] = dly;
763 xx[3] = dlx*dlx;
764 xx[4] = dly*dly;
765 xx[5] = dlx*dly;
766 npoints++;
767 fitterG->AddPoint(xx, GetValue(irow, ipad), err);
f116e22c 768 }
769 }
9cc76bba 770 if(npoints>10) { // make sure there is something to fit
771 fitterG->Eval();
f116e22c 772 fitterG->GetParameters(fitParam);
9cc76bba 773 fitterG->GetCovarianceMatrix(covMatrix);
774 if (fitType == 1)
775 chi2 = fitterG->GetChisquare()/(npoints-6.);
776 else chi2 = fitterG->GetChisquare()/(npoints-3.);
777 if (robust && chi2 > chi2Threshold) {
778 // std::cout << "robust fitter called... " << std::endl;
779 fitterG->EvalRobust(robustFraction);
780 fitterG->GetParameters(fitParam);
781 }
782 } else {
783 // set parameteres to 0
784 Int_t nParameters = 3;
785 if (fitType == 1)
786 nParameters = 6;
787
788 for(Int_t i = 0; i < nParameters; i++)
789 fitParam[i] = 0;
f116e22c 790 }
9cc76bba 791
f116e22c 792 delete fitterG;
793}
794
795
92e56aeb 796AliTPCCalROC* AliTPCCalROC::CreateGlobalFitCalROC(TVectorD &fitParam, Int_t sector){
f116e22c 797 //
f116e22c 798 // Create ROC with global fit parameters
a6d2bd0c 799 // The origin of the fit function is the center of the ROC!
800 // loop over all channels, write fit values into new ROC and return it
f116e22c 801 //
802 Float_t dlx, dly;
803 Float_t centerPad[3] = {0};
804 Float_t localXY[3] = {0};
a5ade541 805 AliTPCCalROC * xROCfitted = new AliTPCCalROC(sector);
f116e22c 806 AliTPCROC* tpcROCinstance = AliTPCROC::Instance();
a5ade541 807 tpcROCinstance->GetPositionLocal(sector, xROCfitted->GetNrows()/2, xROCfitted->GetNPads(xROCfitted->GetNrows()/2)/2, centerPad); // calculate center of ROC
f116e22c 808 Int_t fitType = 1;
809 if (fitParam.GetNoElements() == 6) fitType = 1;
810 else fitType = 0;
811 Double_t value = 0;
812 if (fitType == 1) { // parabolic fit
a5ade541 813 for (UInt_t irow = 0; irow < xROCfitted->GetNrows(); irow++) {
814 for (UInt_t ipad = 0; ipad < xROCfitted->GetNPads(irow); ipad++) {
f116e22c 815 tpcROCinstance->GetPositionLocal(sector, irow, ipad, localXY); // calculate position localXY by pad and row number
b233e5e9 816 dlx = localXY[0] - centerPad[0];
817 dly = localXY[1] - centerPad[1];
f116e22c 818 value = fitParam[0] + fitParam[1]*dlx + fitParam[2]*dly + fitParam[3]*dlx*dlx + fitParam[4]*dly*dly + fitParam[5]*dlx*dly;
a5ade541 819 xROCfitted->SetValue(irow, ipad, value);
f116e22c 820 }
821 }
822 }
823 else { // linear fit
a5ade541 824 for (UInt_t irow = 0; irow < xROCfitted->GetNrows(); irow++) {
825 for (UInt_t ipad = 0; ipad < xROCfitted->GetNPads(irow); ipad++) {
f116e22c 826 tpcROCinstance->GetPositionLocal(sector, irow, ipad, localXY); // calculate position localXY by pad and row number
b233e5e9 827 dlx = localXY[0] - centerPad[0];
828 dly = localXY[1] - centerPad[1];
f116e22c 829 value = fitParam[0] + fitParam[1]*dlx + fitParam[2]*dly;
a5ade541 830 xROCfitted->SetValue(irow, ipad, value);
f116e22c 831 }
832 }
833 }
a5ade541 834 return xROCfitted;
f116e22c 835}
836