Update of TPC code and macros by M.Kowalski
[u/mrichter/AliRoot.git] / TPC / AliTPCClusterFinder.cxx
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cc80f89e 1/**************************************************************************
2 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
3 * *
4 * Author: The ALICE Off-line Project. *
5 * Contributors are mentioned in the code where appropriate. *
6 * *
7 * Permission to use, copy, modify and distribute this software and its *
8 * documentation strictly for non-commercial purposes is hereby granted *
9 * without fee, provided that the above copyright notice appears in all *
10 * copies and that both the copyright notice and this permission notice *
11 * appear in the supporting documentation. The authors make no claims *
12 * about the suitability of this software for any purpose. It is *
13 * provided "as is" without express or implied warranty. *
14 **************************************************************************/
15
16/*
17$Log$
37831078 18Revision 1.2 2000/06/30 12:07:49 kowal2
19Updated from the TPC-PreRelease branch
20
73042f01 21Revision 1.1.2.1 2000/06/25 08:52:51 kowal2
22replacing AliClusterFinder
cc80f89e 23
24*/
25
26//-----------------------------------------------------------------------------
27//
28// Implementation of class ALICLUSTERFINDER
29//
30//Class for cluster finding in two dimension.
31//In the present there are implemented two algorithm
32//primitive recursion algorithm. (FindPeaks)
33//Algorithm is not working in case of overlaping clusters
34//Maximum - minimum in direction algoritm (Find clusters)
35//In this algoritm we suppose that each cluster has local
36//maximum. From this local maximum I mus see each point
37//of cluster.
38//From maximum i can accept every point in radial
39//direction which is before border in direction
40//Border in direction occur if we have next in
41//direction nder threshold or response begin
42//to increase in given radial direction
43//-----------------------------------------------------------------------------
73042f01 44
cc80f89e 45#include "TMinuit.h"
46#include "AliArrayI.h"
47#include "TClonesArray.h"
48#include "AliTPC.h"
49#include "TRandom.h"
50#include "AliH2F.h"
51#include "TMarker.h"
52#include "AliCluster.h"
73042f01 53#include "AliTPCClusterFinder.h"
54#include <fstream.h>
cc80f89e 55
56//direction constants possible direction in 8 different sectors
57//
58
59
60const Int_t kClStackSize =1000;
61
62
63
64
73042f01 65static AliTPCClusterFinder * gClusterFinder; //for fitting routine
cc80f89e 66
67void gauss(Int_t &npar, Double_t *gin, Double_t &f, Double_t *par, Int_t iflag)
68{
69 AliArrayI * points = gClusterFinder->GetStack();
70 const Int_t nbins = gClusterFinder->GetStackIndex();
71 Int_t i;
72 //calculate chisquare
73 Double_t chisq = 0;
74 Double_t delta;
75 for (i=0;i<nbins; i++) {
76 Float_t x = points->At(i*3);
77 Float_t y = points->At(i*3+1);
78 Float_t z = points->At(i*3+2);
79 Float_t deltax2 = (x-par[1]);
80 deltax2*=deltax2;
81 deltax2*=par[3];
82 Float_t deltay2 = (y-par[2]);
83 deltay2*=deltay2;
84 deltay2*=par[4];
85
86 delta = z-par[0]*TMath::Exp(-deltax2-deltay2);
87 chisq += delta*delta;
88 }
89 f = chisq;
90}
91
92
73042f01 93ClassImp(AliTPCClusterFinder)
94 //ClassImp(AliCell)
cc80f89e 95
73042f01 96AliTPCClusterFinder::AliTPCClusterFinder()
cc80f89e 97{
98 fDigits =0;
99 fDimX = 0;
100 fDimY = 0;
cc80f89e 101 fNoiseTh = 3;
102 fMulSigma2 = 16; //4 sigma
103 fDirSigmaFac = 1.4;
104 fDirAmpFac =1.3;
105 fNType=8;
106 fThreshold = 2;
107 fStack = new AliArrayI;
108 fStack->Set(kClStackSize);
109 fClustersArray =0;
73042f01 110 SetSigmaX(1,0,0);
111 SetSigmaY(1,0,0);
112
cc80f89e 113
114 fDetectorParam = 0;
115 ResetStatus();
116 fBFit = kFALSE;
117 fMinuit= new TMinuit(5);
118 fMinuit->SetFCN(gauss);
119 gClusterFinder = this;
120
121}
122
123
73042f01 124AliTPCClusterFinder::~AliTPCClusterFinder()
cc80f89e 125{
126 if (fDigits != 0) delete fDigits;
127}
128
73042f01 129void AliTPCClusterFinder::SetSigmaX(Float_t s0, Float_t s1x, Float_t s1y)
130{
131 fSigmaX[0]=s0;
132 fSigmaX[1]=s1x;
133 fSigmaX[2]=s1y;
134
135}
136void AliTPCClusterFinder::SetSigmaY(Float_t s0, Float_t s1x, Float_t s1y)
137{
138 fSigmaY[0]=s0;
139 fSigmaY[1]=s1x;
140 fSigmaY[2]=s1y;
141}
142
143
144
145Bool_t AliTPCClusterFinder::SetSigma2(Int_t i, Int_t j, Float_t & sigmax2, Float_t &sigmay2)
146{
147 //
148 //set sigmax2 and sigma y2 accordig i and j position of cell
149 //
150
151 // Float_t x[3] = {ItoX(i),JtoY(j),0};
152 Float_t x= ItoX(i);
153 Float_t y= JtoY(j);
154
155 sigmax2= fSigmaX[0]+fSigmaX[1]*x+fSigmaX[2]*y;
156 sigmay2= fSigmaY[0]+fSigmaY[1]*x+fSigmaY[2]*y;
157 return kTRUE;
158}
159
160/*
161Bool_t AliTPCClusterFinder::SetSigma2(Int_t i, Int_t j, Float_t & sigmax2, Float_t &sigmay2)
162{
163 //
164 //set sigmax2 and sigma y2 accordig i and j position of cell
165 //
166 if (fDetectorParam==0) {
167 sigmax2=1;
168 sigmay2=1;
169 return kFALSE;
170 }
171 Float_t x[3] = {ItoX(i),JtoY(j),0};
172 Float_t sigma[2];
173 fDetectorParam->GetClusterSize(x,fDetectorIndex,0,0,sigma);
174 sigmax2=sigma[0]*(fX2-fX1)*(fX2-fX1)/(fDimX*fDimX);
175 sigmay2=sigma[1]*(fY2-fY1)*(fY2-fY1)/(fDimY*fDimY);
176 return kTRUE;
177}
178*/
179
180
181void AliTPCClusterFinder::GetHisto(TH2F * his2)
cc80f89e 182{
183
73042f01 184 UInt_t idim =his2->GetNbinsX();
185 UInt_t jdim =his2->GetNbinsY();
cc80f89e 186 fX1 = his2->GetXaxis()->GetXmin();
187 fX2 = his2->GetXaxis()->GetXmax();
188 fY1 = his2->GetYaxis()->GetXmin();
189 fY2 = his2->GetYaxis()->GetXmax();
190
191 if ( (idim>0) && (jdim>0))
192 {
193 rOK = kTRUE;
194 fDimX = idim;
195 fDimY = jdim;
73042f01 196 Int_t size =idim*jdim;
cc80f89e 197 if (fDigits !=0) delete fDigits;
73042f01 198 fDigits = (Int_t*) new Int_t[size];
199 fCells = (AliCell*) new AliCell[size];
200
cc80f89e 201 } else
202 rOK=kFALSE;
37831078 203 for (Int_t i = 0; i<(Int_t)idim;i++)
204 for (Int_t j = 0; j<(Int_t)jdim;j++)
cc80f89e 205 {
206 Int_t index = his2->GetBin(i+1,j+1);
73042f01 207 //AliCell * cell = GetCell(i,j);
208 //if (cell!=0) cell->SetSignal(his2->GetBinContent(index));
209 SetSignal(his2->GetBinContent(index),i,j);
cc80f89e 210 }
211
212}
213
214
215
216
73042f01 217void AliTPCClusterFinder::FindMaxima()
cc80f89e 218{
219 for (Int_t i=0; i<fDimX; i++)
220 for (Int_t j=0;j<fDimY; j++)
221 if (IsMaximum(i,j)) cout<<i<<" "<<j<<"\n";
222}
223
224
73042f01 225void AliTPCClusterFinder::Transform(AliDigitCluster * c)
cc80f89e 226{
227 //transform coordinata from bin coordinata to "normal coordinata"
228 //for example if we initialize finder with histogram
229 //it transform values from bin coordinata to the histogram coordinata
230 c->fX=ItoX(c->fX);
231 c->fY=JtoY(c->fY);
232 c->fMaxX=ItoX(c->fMaxX);
233 c->fMaxY=JtoY(c->fMaxY);
234
235 c->fSigmaX2=c->fSigmaX2*(fX2-fX1)*(fX2-fX1)/(fDimX*fDimX);
236 c->fSigmaY2=c->fSigmaY2*(fY2-fY1)*(fY2-fY1)/(fDimY*fDimY);
237 c->fArea =c->fArea*(fX2-fX1)*(fY2-fY1)/(fDimX*fDimY);
238}
73042f01 239void AliTPCClusterFinder::AddToStack(Int_t i, Int_t j, Int_t signal)
cc80f89e 240{
241 //
242 //add digit to stack
243 //
244 if ( ((fStackIndex+2)>=kClStackSize) || (fStackIndex<0) ) return;
245 fStack->AddAt(i,fStackIndex);
246 fStack->AddAt(j,fStackIndex+1);
247 fStack->AddAt(signal,fStackIndex+2);
248 fStackIndex+=3;
249}
250
73042f01 251void AliTPCClusterFinder::GetClusterStatistic(AliDigitCluster & cluster)
cc80f89e 252{
253 //
254 //calculate statistic of cluster
255 //
256 Double_t sumxw,sumyw,sumx2w,sumy2w,sumxyw,sumw;
73042f01 257 Int_t minx,maxx,miny,maxy;
cc80f89e 258 sumxw=sumyw=sumx2w=sumy2w=sumxyw=sumw=0;
259 minx=fDimX;
260 maxx=-fDimX;
261 miny=fDimY;
262 maxy=-fDimY;
263 Int_t x0=fStack->At(0);
264 Int_t y0=fStack->At(1);
73042f01 265 Int_t maxQx =x0;
266 Int_t maxQy =y0;
267 Int_t maxQ=fStack->At(2);
268
269
cc80f89e 270 for (Int_t i = 0; i<fStackIndex;i+=3){
271 Int_t x = fStack->At(i);
272 Int_t y = fStack->At(i+1);
273 Int_t dx=x-x0;
274 Int_t dy=y-y0;
275 Int_t w = fStack->At(i+2);
73042f01 276 if (w>maxQ){
277 maxQ = w;
278 maxQx = x;
279 maxQy=y;
280 }
cc80f89e 281 if (x<minx) minx=x;
282 if (y<miny) miny=y;
283 if (x>maxx) maxx=x;
284 if (y>maxy) maxy=y;
285 sumxw+=dx*w;
286 sumyw+=dy*w;
287 sumx2w+=dx*dx*w;
288 sumy2w+=dy*dy*w;
289 sumxyw+=dx*dy*w;
290 sumw+=w;
291 }
292 cluster.fQ = sumw;
293 if (sumw>0){
294 cluster.fX = sumxw/sumw;
295 cluster.fY = sumyw/sumw;
296 cluster.fQ = sumw;
297 cluster.fSigmaX2 = sumx2w/sumw-cluster.fX*cluster.fX;
298 cluster.fSigmaY2 = sumy2w/sumw-cluster.fY*cluster.fY;
299 cluster.fSigmaXY = sumxyw/sumw-cluster.fX*cluster.fY;
73042f01 300 cluster.fMaxX = maxQx;
301 cluster.fMaxY = maxQy;
cc80f89e 302 cluster.fMax = maxQ;
303 cluster.fArea = fStackIndex/3;
304 cluster.fNx = maxx-minx+1;
305 cluster.fNy = maxy-miny+1;
306 cluster.fX +=x0;
307 cluster.fY +=y0;
308 }
309}
73042f01 310void AliTPCClusterFinder::GetClusterFit(AliDigitCluster & cluster)
cc80f89e 311{
312 //
313 //calculate statistic of cluster
314 //
315 Double_t arglist[10];
316 Int_t ierflg = 0;
317
318 arglist[0] = 1;
319 fMinuit->mnexcm("SET ERR", arglist ,1,ierflg);
320
321 //fistly find starting parameters
322 Int_t minx,maxx,miny,maxy,maxQ,maxQx,maxQy;
323 Int_t over =0;
324 Float_t sumxw,sumyw,sumw;
325 sumxw=sumyw=sumw=0;
326 minx=fDimX;
327 maxx=-fDimX;
328 miny=fDimY;
329 maxy=-fDimY;
330 maxQx=fStack->At(0);
331 maxQy=fStack->At(1);
332 maxQ=fStack->At(2);
333
334 for (Int_t i = 0; i<fStackIndex;i+=3){
335 Int_t x = fStack->At(i);
336 Int_t y = fStack->At(i+1);
337 Int_t w = fStack->At(i+2);
338 if (w>fThreshold) {
339 over++;
340 sumw+=w;
341 sumxw+=x*w;
342 sumyw+=y*w;
343 if (x<minx) minx=x;
344 if (y<miny) miny=y;
345 if (x>maxx) maxx=x;
346 if (y>maxy) maxy=y;
347 if (w>maxQ) {
348 maxQ=w;
349 maxQx=x;
350 maxQy=y;
351 }
352 }
353 }
354 Int_t nx = maxx-minx+1;
355 Int_t ny = maxy-miny+1;
356
357 SetSigma2(maxQx,maxQy,fCurrentSigmaX2,fCurrentSigmaY2);
358 Double_t vstart[5]={maxQ,sumxw/sumw,sumyw/sumw,1/(2*fCurrentSigmaX2),1/(2*fCurrentSigmaY2)};
359 Double_t step[5]={1.,0.01,0.01,0.01,0.01};
360 fMinuit->mnparm(0, "amp", vstart[0], step[0], 0,0,ierflg);
361 fMinuit->mnparm(1, "x0", vstart[1], step[1], 0,0,ierflg);
362 fMinuit->mnparm(2, "y0", vstart[2], step[2], 0,0,ierflg);
363 fMinuit->mnparm(3, "sx2", vstart[3], step[3], 0,0,ierflg);
364 fMinuit->mnparm(4, "sy2", vstart[4], step[4], 0,0,ierflg);
365 arglist[0] = 500;
366 arglist[1] = 1.;
367
368 fMinuit->mnfree(0); //set unfixed all parameters
369 //if we have area less then
370 if (over<=21) { //if we dont't have more then 7 points
371 fMinuit->FixParameter(3);
372 fMinuit->FixParameter(4);
373 }
374 else {
375 if (nx<3) fMinuit->FixParameter(3); //fix sigma x if no data in x direction
376 if (ny<3) fMinuit->FixParameter(4); //fix sigma y if no data in y direction
377 }
378 fMinuit->mnexcm("MIGRAD", arglist ,2,ierflg);
379
380 if (sumw>0){
381 Double_t x[5];
382 Double_t error[5];
383 fMinuit->GetParameter(0,x[0],error[0]);
384 fMinuit->GetParameter(1,x[1],error[1]);
385 fMinuit->GetParameter(2,x[2],error[2]);
386 fMinuit->GetParameter(3,x[3],error[3]);
387 fMinuit->GetParameter(4,x[4],error[4]);
388
389 cluster.fX = x[1];
390 cluster.fY = x[2];
391 cluster.fMaxX = maxQx;
392 cluster.fMaxY = maxQy;
393
394 cluster.fQ = sumw;
395 cluster.fSigmaX2 = 1/TMath::Sqrt(2*x[3]);
396 cluster.fSigmaY2 = 1/TMath::Sqrt(2*x[4]);
397 cluster.fSigmaXY = 0;
398 cluster.fMax = x[0];
399 cluster.fArea = over;
400 cluster.fNx = nx;
401 cluster.fNy = ny;
402 }
403}
404
73042f01 405Bool_t AliTPCClusterFinder::CheckIfDirBorder(Float_t x, Float_t y,
cc80f89e 406 Int_t i,Int_t j)
407{
408 //
409 //function which control if given cell with index i, j is the
410 //minimum in direction
411 // x and y are estimate of local maximum
412 //direction is given by the
413 Float_t virtualcell;
414 AliCell * cellor= GetCell(i,j);
73042f01 415 Int_t sigor = GetSignal(i,j);
416
cc80f89e 417 //control derivation in direction
418 //if function grows up in direction then there is border
419 Float_t dx = i-x;
420 Float_t dy = j-y;
421 Float_t dd = TMath::Sqrt(dx*dx+dy*dy);
422 Float_t ddx = TMath::Abs(dx);
423 ddx = (ddx>0.5) ? ddx-0.5: 0;
424 ddx*=ddx;
425 Float_t ddy = TMath::Abs(dy);
426 ddy = (ddy>0.5) ? ddy-0.5: 0;
427 ddy*=ddy;
428 Float_t d2 = ddx/(2*fDirSigmaFac*fCurrentSigmaX2)+ddy/(2*fDirSigmaFac*fCurrentSigmaY2); //safety factor
429 //I accept sigmax and sigma y bigge by factor sqrt(fDirsigmaFac)
430 Float_t amp = TMath::Exp(-d2)*fCurrentMaxAmp*fDirAmpFac; //safety factor fDirFac>1
431
73042f01 432 if (sigor>amp) return kTRUE;
cc80f89e 433 if (dd==0) return kFALSE;
434
435 dx/=dd;
436 dy/=dd;
437 virtualcell = GetVirtualSignal(i+dx,j+dy);
438 if (virtualcell <=fThreshold) return kFALSE;
73042f01 439 if (virtualcell>sigor)
440 if (virtualcell>(sigor+fNoiseTh))
441 {cellor->SetDirBorder(fIndex); return kTRUE;}
cc80f89e 442 else
443 {
444 virtualcell = GetVirtualSignal(i+2*dx,j+2*dy);
73042f01 445 if (virtualcell>sigor)
446 { cellor->SetDirBorder(fIndex); return kTRUE;}
cc80f89e 447 };
448 return kFALSE;
449}
450
451
452
73042f01 453
454
455Bool_t AliTPCClusterFinder::IsMaximum(Int_t i, Int_t j)
cc80f89e 456{
457 //there is maximum if given digits is 1 sigma over all adjacent
458 //in 8 neighborow
459 //or ther exist virual maximum
460 //is maximum on 24 points neighboring
461 // Bool_t res = kFALSE;
462 Int_t over =0;
463 Int_t overth=0;
464 Int_t oversigma =0;
465 AliCell * cell = GetCell(i,j);
73042f01 466 Int_t signal = GetSignal(i,j);
cc80f89e 467 if (cell == 0) return kFALSE;
468 for ( Int_t di=-1;di<=1;di++)
469 for ( Int_t dj=-1;dj<=1;dj++){
470 if ( (di!=0) || (dj!=0))
471 {
472 AliCell * cell2=GetCell(i+di,j+dj);
73042f01 473 Int_t signal2 = GetSignal(i+di,j+dj);
cc80f89e 474 if (cell2 == 0) {
475 over+=1;
476 oversigma+=1;
477 }
478 else
479 {
73042f01 480 if (signal2>signal) return kFALSE;
481 if (signal2>fThreshold) overth++;
482 if (signal2==signal) {
cc80f89e 483 if (di<0) return kFALSE;
484 if ( (di+dj)<0) return kFALSE;
485 }
73042f01 486 // if (signal>=signal2){
cc80f89e 487 over+=1;
73042f01 488 if (signal>fNoiseTh+signal2)
cc80f89e 489 oversigma+=1;
490 //}
491 }
492 }
493 }
494 //if I have only one neighborough over threshold
495 if (overth<2) return kFALSE;
496 if (over<8) return kFALSE;
497 if (oversigma==8) {
498 fCurrentMaxX = i;
499 fCurrentMaxY = j;
73042f01 500 fCurrentMaxAmp =signal;
501 SetMaximum(fIndex,i,j);
cc80f89e 502 return kTRUE;
503 }
504 //check if there exist virtual maximum
73042f01 505 for (Float_t ddi=0.;(ddi<1.);ddi+=0.5)
506 for (Float_t ddj=0.;(ddj<1.);ddj+=0.5)
507 if (IsVirtualMaximum(Float_t(i)+ddi,Float_t(j)+ddj)){
508 fCurrentMaxX = i+ddi;
509 fCurrentMaxY = j+ddj;
510 fCurrentMaxAmp =signal;
511 SetMaximum(fIndex,i,j);
cc80f89e 512 return kTRUE;
513 }
514 return kFALSE;
515}
516
73042f01 517Bool_t AliTPCClusterFinder::IsVirtualMaximum(Float_t x, Float_t y)
cc80f89e 518{
519 //there is maximum if given digits is 1 sigma over all adjacent
520 //in 8 neighborow or
521 //is maximum on 24 points neighboring
522 Bool_t res = kFALSE;
523 Int_t over =0;
524 Int_t overth=0;
525 Int_t oversigma =0;
526 Float_t virtualcell = GetVirtualSignal(x,y);
527 if (virtualcell < 0) return kFALSE;
528 for ( Int_t di=-1;di<=1;di++)
529 for ( Int_t dj=-1;dj<=1;dj++)
530 if ( (di!=0) || (dj!=0))
531 {
532 Float_t virtualcell2=GetVirtualSignal(x+di,y+dj);
533 if (virtualcell2 < 0) {
534 over+=1;
535 oversigma+=1;
536 }
537 else
538 {
539 if (virtualcell2>fThreshold) overth++;
540 if (virtualcell>=virtualcell2){
541 over+=1;
542 if (virtualcell>fNoiseTh+virtualcell2)
543 oversigma+=1;
544 }
545 }
546 }
547 if (overth<2) return kFALSE;
548 //if there exist only one or less neighboring above threshold
549 if (oversigma==8) res = kTRUE;
550 else if ((over==8)&&(GetNType()==8)) res=kTRUE;
551 else if (over ==8 )
73042f01 552 for ( Int_t di=-2;di<=2;di++)
cc80f89e 553 for ( Int_t dj=-2;dj<=2;dj++)
73042f01 554 if ( (di==2)||(di==-2) || (dj==2)|| (dj==-2) )
cc80f89e 555 {
73042f01 556 Float_t virtualcell2=GetVirtualSignal(x+di,y+dj);
cc80f89e 557 if (virtualcell2 < 0) {
558 over+=1;
559 oversigma+=1;
560 }
561 else
562 {
563 if (virtualcell>=virtualcell2) over+=1;
564 }
565 }
566 if (over == 24) res=kTRUE;
567 return res;
568
569}
570
571
73042f01 572void AliTPCClusterFinder::ResetSignal()
cc80f89e 573{
574 //reset dignals to 0
575 Int_t size = fDimX*fDimY;
73042f01 576 AliCell *dig=fCells;
cc80f89e 577 if (rOK==kTRUE) for (Int_t i=0 ; i<size;i++) dig[i] = 0;
578}
579
580
581
73042f01 582void AliTPCClusterFinder::ResetStatus()
cc80f89e 583{
584 //reset status of signals to not used
585 Int_t size = fDimX*fDimY;
73042f01 586 AliCell *dig=fCells;
cc80f89e 587 if (rOK==kTRUE) for (Int_t i=0 ; i<size;i++)
588 dig[i].SetStatus(0);
589}
590
591
73042f01 592AliCell * AliTPCClusterFinder::GetCell(Int_t i, Int_t j)
cc80f89e 593{
594 //return reference to the cell with index i,j
595 if (rOK == kTRUE)
596 if ( (i>=0) && (i<fDimX) && (j>=0) && (j<fDimY) )
73042f01 597 return &fCells[i+j*fDimX];
cc80f89e 598 return 0;
599}
600
73042f01 601Float_t AliTPCClusterFinder::GetVirtualSignal(Float_t ri, Float_t rj)
cc80f89e 602{
603 //it generate virtual cell as mean value from different cels
604 //after using it must be destructed !!!
605 Int_t i=(Int_t)ri;
606 Int_t j=(Int_t)rj;
607 Int_t ddi = (ri>i)? 1:0;
608 Int_t ddj = (rj>j)? 1:0;
609 Float_t sum = 0;
610 Float_t sumw= 0;
611 for (Int_t di=0;di<=ddi;di++)
612 for (Int_t dj=0;dj<=ddj;dj++)
613 {
614 Float_t w = (ri-i-di)*(ri-i-di)+(rj-j-dj)*(rj-j-dj);
615 if (w>0) w=1/TMath::Sqrt(w);
616 else w=9999999;
617 AliCell * cel2 =GetCell(i+di,j+dj);
73042f01 618 Int_t signal2 = GetSignal(i+di,j+dj);
cc80f89e 619 if (cel2!=0) {
620 sumw+=w;
73042f01 621 sum+= signal2*w;
cc80f89e 622 }
623 }
624 if (sumw>0) return (sum/sumw);
625 else
626 return -1;
627}
628
629
630
73042f01 631void AliTPCClusterFinder::Streamer(TBuffer & R__b)
cc80f89e 632{
633 if (R__b.IsReading()) {
634 // Version_t R__v = R__b.ReadVersion();
635 } else {
73042f01 636 R__b.WriteVersion(AliTPCClusterFinder::IsA());
cc80f89e 637 }
638}
639
640
cc80f89e 641
73042f01 642void AliTPCClusterFinder::SetBlockIndex(Int_t * index)
cc80f89e 643{
644 //
645 //calculate which indexes we must check for border
646 //
647 if (TMath::Abs(index[0])<2) index[2] = 0;
648 else {
649 index[2] = TMath::Abs(index[0])-1;
650 if (index[0]<0) index[2]*=-1; //first x block
651 }
652 if (TMath::Abs(index[1])<2) index[3] = 0;
653 else {
654 index[3] = TMath::Abs(index[1])-1;
655 if (index[1]<0) index[3]*=-1; //first y block
656 }
657 if (TMath::Abs(index[0])<TMath::Abs(index[1])){
658 index[4]=index[0];
659 index[5]=index[3];
660 }
661 else
662 if (index[0]==index[1]) {
663 index[4]=0;
664 index[5]=0;
665 }
666 else{
667 index[4]=index[2];
668 index[5]=index[1];
669 }
670 return;
671}
672
673//***********************************************************************
674//***********************************************************************
675
73042f01 676TClonesArray * AliTPCClusterFinder::FindPeaks1(TClonesArray *arr)
cc80f89e 677{
678 //find peaks and write it in form of AliTPCcluster to array
73042f01 679 if (arr==0){
680 fClustersArray=new TClonesArray("AliDigitCluster",300);
681 fIndex=1;
682 }
683 else {
684 fClustersArray = arr;
685 fIndex = fClustersArray->GetEntriesFast();
686 }
687
688 AliDigitCluster c;
cc80f89e 689 ResetStatus();
cc80f89e 690 for (Int_t i=0; i<fDimX; i++)
691 for (Int_t j=0;j<fDimY; j++)
692 {
693 fStackIndex=0;
694 fBDistType = kFALSE;
695 AliCell * cell = GetCell(i,j);
696 if (!(cell->IsChecked())) Adjacent(i,j);
697 //if there exists more then 2 digits cluster
698 if (fStackIndex >2 ){
699 if (fBFit==kFALSE) GetClusterStatistic(c);
700 else GetClusterFit(c);
701 //write some important chracteristic area of cluster
702 //
703 Transform(&c);
704 //write cluster information to array
73042f01 705 TClonesArray &lclusters = *fClustersArray;
706 new (lclusters[fIndex++]) AliDigitCluster(c);
cc80f89e 707 // cout<<"fx="<<c.fX<<" fy"<<c.fY<<"\n";
708 }
709 }
73042f01 710 return fClustersArray;
cc80f89e 711}
712
713
73042f01 714TClonesArray * AliTPCClusterFinder::FindPeaks2(TClonesArray *arr)
cc80f89e 715{
716 //find peaks and write it in form of AliTPCcluster to array
73042f01 717 if (arr==0){
718 fClustersArray=new TClonesArray("AliDigitCluster",300);
719 fIndex=1;
720 }
721 else {
722 fClustersArray = arr;
723 fIndex = fClustersArray->GetEntriesFast();
724 }
725
726 AliDigitCluster c;
cc80f89e 727 ResetStatus();
728
729 for (Int_t i=0; i<fDimX; i++)
730 for (Int_t j=0;j<fDimY; j++)
731 {
732 fStackIndex=0;
733 if (IsMaximum(i,j) == kTRUE){
734 SetSigma2(i,j,fCurrentSigmaX2,fCurrentSigmaY2);
735 fBDistType = kTRUE;
736 Adjacent(i,j);
737 //if there exists more then 2 digits cluster
738 if (fStackIndex >2 ){
739 if (fBFit==kFALSE) GetClusterStatistic(c);
740 else GetClusterFit(c);
741 //write some important chracteristic area of cluster
742 //
743 Transform(&c);
744 //write cluster information to array
73042f01 745 TClonesArray &lclusters = *fClustersArray;
cc80f89e 746 new(lclusters[fIndex++]) AliDigitCluster(c);
747 // cout<<"fx="<<c.fX<<" fy"<<c.fY<<"\n";
748 }
749 }
750 }
73042f01 751 return fClustersArray;
cc80f89e 752}
753
754
73042f01 755TClonesArray * AliTPCClusterFinder::FindPeaks3(TClonesArray *arr)
cc80f89e 756{
757 //find peaks and write it in form of AliTPCcluster to array
73042f01 758 if (arr==0){
759 fClustersArray=new TClonesArray("AliDigitCluster",300);
760 fIndex=1;
761 }
762 else {
763 fClustersArray = arr;
764 fIndex = fClustersArray->GetEntriesFast();
765 }
766
767 AliDigitCluster c;
cc80f89e 768 ResetStatus();
769
770 Int_t dmax=5;
771 Int_t naccepted =1;
772 for (Int_t i=0; i<fDimX; i++)
773 for (Int_t j=0;j<fDimY; j++)
774 {
775 fStackIndex=0;
776 if (IsMaximum(i,j) == kTRUE){
777 SetSigma2(i,j,fCurrentSigmaX2,fCurrentSigmaY2);
73042f01 778 AddToStack(i,j,GetSignal(i,j));
cc80f89e 779
780 //loop over different distance
781 naccepted =1;
782 for ( Int_t dd =1;((dd<=dmax) && (naccepted>0));dd++){
783 naccepted=0;
784 for (Int_t di = -dd;di<=dd;di++){
73042f01 785 Int_t ddj = dd-abs(di);
cc80f89e 786 Int_t sigstart = (ddj>0) ? -1 : 0;
787 for (Int_t sig = sigstart;sig<=1;sig+=2){
788 Int_t dj= sig*ddj;
789 AliCell *cell= GetCell(i+di,j+dj);
73042f01 790 Int_t signal = GetSignal(i+di,j+dj);
cc80f89e 791 if (cell==0) continue;
792 Int_t index[6];
793 index[0]=di;
794 index[1]=dj;
795 if (dd>2) {
796 SetBlockIndex(index); //adjust index to control
73042f01 797 if ( IsBorder(fIndex,i+index[2],j+index[3]) ||
798 IsBorder(fIndex,i+index[4],j+index[5])) {
799 cell->SetBorder(fIndex);
cc80f89e 800 continue;
801 }
802 }
73042f01 803 if ( signal<=fThreshold ){
cc80f89e 804 //if under threshold
73042f01 805 cell->SetThBorder(fIndex);
806 if (fBFit==kTRUE) AddToStack(i+di,j+dj,signal);
cc80f89e 807 continue;
808 }
809 naccepted++;
810 if (CheckIfDirBorder(fCurrentMaxX,fCurrentMaxY,i+di,j+dj) == kTRUE) {
73042f01 811 if (fBFit==kFALSE) AddToStack(i+di,j+dj,signal/2);
cc80f89e 812 continue;
813 }
73042f01 814 AddToStack(i+di,j+dj,signal);
cc80f89e 815
816 } //loop over sig dj
817 } //loop over di
818
819 }//loop over dd
820 } //if there is maximum
821 //if there exists more then 2 digits cluster
822 if (fStackIndex >2 ){
823 if (fBFit==kFALSE) GetClusterStatistic(c);
824 else GetClusterFit(c);
825 //write some important chracteristic area of cluster
826 //
827 Transform(&c);
828 //write cluster information to array
73042f01 829 TClonesArray &lclusters = *fClustersArray;
cc80f89e 830 new(lclusters[fIndex++]) AliDigitCluster(c);
831 // cout<<"fx="<<c.fX<<" fy"<<c.fY<<"\n";
832 }
833 } //lopp over all digits
834
73042f01 835 return fClustersArray;
cc80f89e 836}
837
838
839
840
841
842
73042f01 843void AliTPCClusterFinder::Adjacent(Int_t i,Int_t j)
cc80f89e 844{
845 //
846 //recursive agorithm program
847 //
848 if (fBDistType==kTRUE) {
849 Float_t delta = (i-fCurrentMaxX)*(i-fCurrentMaxX)/fCurrentSigmaX2;
850 delta+=(j-fCurrentMaxY)*(j-fCurrentMaxY)/fCurrentSigmaY2;
851 if (delta > fMulSigma2) {
73042f01 852 SetDirBorder(fIndex,i,j);
cc80f89e 853 return;
854 }
855 }
856 AliCell *cell = GetCell(i,j);
73042f01 857 Int_t signal = GetSignal(i,j);
858 Int_t q=signal;
859 cell->SetChecked(fIndex);
cc80f89e 860 if ( (q>fThreshold) || (fBFit==kTRUE)) AddToStack(i,j,q);
861 if ( q >fThreshold )
862 {
863
864 AliCell * newcel;
865 newcel = GetCell(i-1,j);
73042f01 866 if (newcel !=0) if (!newcel->IsChecked(fIndex) ) Adjacent(i-1,j);
cc80f89e 867 newcel = GetCell(i,j-1);
73042f01 868 if (newcel !=0) if (!newcel->IsChecked(fIndex) ) Adjacent(i,j-1);
cc80f89e 869 newcel = GetCell(i+1,j);
73042f01 870 if (newcel !=0) if (!newcel->IsChecked(fIndex) ) Adjacent(i+1,j);
cc80f89e 871 newcel = GetCell(i,j+1);
73042f01 872 if (newcel !=0) if (!newcel->IsChecked(fIndex) ) Adjacent(i,j+1);
cc80f89e 873 }
73042f01 874 else cell->SetThBorder(fIndex);
cc80f89e 875}
876
877
878
73042f01 879AliH2F * AliTPCClusterFinder::DrawHisto( const char *option=0,
cc80f89e 880 Float_t x1, Float_t x2, Float_t y1, Float_t y2)
881{
882 //
883 //draw digits in given array
884 //
885 //make digits histo
886 char ch[30];
887 sprintf(ch,"Cluster finder digits ");
888 if ( (fDimX<1)|| (fDimY<1)) {
889 return 0;
890 }
891 AliH2F * his = new AliH2F(ch,ch,fDimX,fX1,fX2,fDimY,fY1,fY2);
892 //set histogram values
893 for (Int_t i = 0; i<fDimX;i++)
894 for (Int_t j = 0; j<fDimY;j++){
895 Float_t x = ItoX(i);
896 Float_t y= JtoY(j);
897 his->Fill(x,y,GetSignal(i,j));
898 }
899 if (x1>=0) {
900 AliH2F *h2fsub = his->GetSubrange2d(x1,x2,y1,y2);
901 delete his;
902 his=h2fsub;
903 }
904 if (his==0) return 0;
905 if (option!=0) his->Draw(option);
906 else his->Draw();
907 return his;
908}
909
910
73042f01 911void AliTPCClusterFinder::DrawCluster(
cc80f89e 912 Int_t color, Int_t size, Int_t style)
913{
914
915 if (fClustersArray==0) return;
916 //draw marker for each of cluster
917 Int_t ncl=fClustersArray->GetEntriesFast();
918 for (Int_t i=0;i<ncl;i++){
919 AliCluster *cl = (AliCluster*)fClustersArray->UncheckedAt(i);
920 TMarker * marker = new TMarker;
921 marker->SetX(cl->fX);
922 marker->SetY(cl->fY);
923 marker->SetMarkerSize(size);
924 marker->SetMarkerStyle(style);
925 marker->SetMarkerColor(color);
926 marker->Draw();
927 }
928}
929
930
931
73042f01 932AliH2F * AliTPCClusterFinder::DrawBorders( const char *option, AliH2F *h, Int_t type ,
cc80f89e 933 Float_t x1, Float_t x2, Float_t y1, Float_t y2)
934{
935 //
936 //draw digits in given array
937 //
938 //make digits histo
939 char ch[30];
940 sprintf(ch,"Cluster finder digits borders");
941 if ( (fDimX<1)|| (fDimY<1)) {
942 return 0;
943 }
944 AliH2F * his;
945 if (h!=0) his =h;
946 else his = new AliH2F(ch,ch,fDimX,fX1,fX2,fDimY,fY1,fY2);
947 //set histogram values
948 for (Int_t i = 0; i<fDimX;i++)
949 for (Int_t j = 0; j<fDimY;j++){
950 Float_t x = ItoX(i);
951 Float_t y= JtoY(j);
952 if (((type==1)||(type==0))&&IsMaximum(0,i,j)) his->Fill(x,y,16);
953 if (((type==3)||(type==0))&&(IsDirBorder(0,i,j))) his->Fill(x,y,8);
954 if (((type==4)||(type==0))&&(IsThBorder(0,i,j))) his->Fill(x,y,4);
955 if (((type==2)||(type==0))&&IsBorder(0,i,j)) his->Fill(x,y,1);
956
957 }
958
959 if (x1>=0) {
960 AliH2F *h2fsub = his->GetSubrange2d(x1,x2,y1,y2);
961 delete his;
962 his=h2fsub;
963 }
964 if (his==0) return 0;
965 if (option!=0) his->Draw(option);
966 else his->Draw();
967 return his;
968}