[u/mrichter/AliRoot.git] / TPC / AliTPCcalibBase.cxx

/**************************************************************************
 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
 *                                                                        *
 * Author: The ALICE Off-line Project.                                    *
 * Contributors are mentioned in the code where appropriate.              *
 *                                                                        *
 * Permission to use, copy, modify and distribute this software and its   *
 * documentation strictly for non-commercial purposes is hereby granted   *
 * without fee, provided that the above copyright notice appears in all   *
 * copies and that both the copyright notice and this permission notice   *
 * appear in the supporting documentation. The authors make no claims     *
 * about the suitability of this software for any purpose. It is          *
 * provided "as is" without express or implied warranty.                  *
 **************************************************************************/


///////////////////////////////////////////////////////////////////////////////
//                                                                           //
//  Base class for the calibration components using 
//  as input TPCseeds and ESDs
//  Event loop outside of the component
//
//
// Base functionality to be implemeneted by component 
/* 
   //In some cases only one of this function to be implemented
   virtual void     Process(AliESDEvent *event)
   virtual void     Process(AliTPCseed *track)
   //
   virtual Long64_t Merge(TCollection *li);
   virtual void     Analyze()
   void             Terminate();
*/
// Functionality provided by base class for Algorith debuging:
//  TTreeSRedirector * cstream =  GetDebugStreamer() - get debug streamer which can be use for numerical debugging
//                      


//  marian.ivanov@cern.ch
// 
#include "AliTPCcalibBase.h"
#include "TSystem.h"
#include "TFile.h"
#include "TTreeStream.h"
#include "TTimeStamp.h"
#include "TGraph.h"
#include "TGraphErrors.h"
#include "TF1.h"
#include "TH1.h"
#include "THnSparse.h"
#include "TH1D.h"
#include "TH2D.h"
#include "TAxis.h"
#include "AliRecoParam.h"


#include "AliLog.h"
#include "AliESDEvent.h"


ClassImp(AliTPCcalibBase)

AliTPCcalibBase::AliTPCcalibBase():
    TNamed(),
    fDebugStreamer(0),
    fStreamLevel(0),   
    fRun(0),                  //!  current Run number
    fEvent(0),                //!  current Event number
    fTime(0),                 //!  current Time
    fTrigger(0),              //! current trigger type
    fMagF(0),                 //! current magnetic field
    fTriggerMaskReject(-1),   //trigger mask - reject trigger
    fTriggerMaskAccept(-1),   //trigger mask - accept trigger
    fHasLaser(kFALSE),                    //flag the laser is overlayed with given event 
    fRejectLaser(kTRUE),                 //flag- reject laser
    fTriggerClass(),
    fCurrentEvent(0),           //! current event
    fCurrentTrack(0),           //! current esd track
    fCurrentFriendTrack(0),           //! current esd track
    fCurrentSeed(0),            //! current seed
    fDebugLevel(0)
{
  //
  // Constructor
  //
}

AliTPCcalibBase::AliTPCcalibBase(const char * name, const char * title):
  TNamed(name,title),
  fDebugStreamer(0),
  fStreamLevel(0),   
  fRun(0),                  //!  current Run number
  fEvent(0),                //!  current Event number
  fTime(0),                 //!  current Time
  fTrigger(0),              //! current trigger type
  fMagF(0),                 //! current magnetic field
  fTriggerMaskReject(-1),   //trigger mask - reject trigger
  fTriggerMaskAccept(-1),   //trigger mask - accept trigger
  fHasLaser(kFALSE),                    //flag the laser is overlayed with given event 
  fRejectLaser(kTRUE),                 //flag- reject laser
  fTriggerClass(),
  fCurrentEvent(0),           //! current event
  fCurrentTrack(0),           //! current esd track
  fCurrentFriendTrack(0),           //! current esd track
  fCurrentSeed(0),            //! current seed
  fDebugLevel(0)
{
  //
  // Constructor
  //
}

AliTPCcalibBase::AliTPCcalibBase(const AliTPCcalibBase&calib):
  TNamed(calib),
  fDebugStreamer(0),
  fStreamLevel(calib.fStreamLevel),
  fRun(0),                  //!  current Run number
  fEvent(0),                //!  current Event number
  fTime(0),                 //!  current Time
  fTrigger(0),              //! current trigger type
  fMagF(0),                 //! current magnetic field
  fTriggerMaskReject(calib.fTriggerMaskReject),   //trigger mask - reject trigger
  fTriggerMaskAccept(calib.fTriggerMaskAccept),   //trigger mask - accept trigger
  fHasLaser(calib.fHasLaser),                    //flag the laser is overlayed with given event
  fRejectLaser(calib.fRejectLaser),                 //flag- reject laser
  fTriggerClass(calib.fTriggerClass),
  fCurrentEvent(0),           //! current event
  fCurrentTrack(0),           //! current esd track
  fCurrentFriendTrack(0),           //! current esd track
  fCurrentSeed(0),            //! current seed
  fDebugLevel(calib.fDebugLevel)
{
  //
  // copy constructor
  //
}

AliTPCcalibBase &AliTPCcalibBase::operator=(const AliTPCcalibBase&calib){
  //
  // operator=
  //
  ((TNamed *)this)->operator=(calib);
  fDebugStreamer=0;
  fStreamLevel=calib.fStreamLevel;
  fDebugLevel=calib.fDebugLevel;
  return *this;
}


AliTPCcalibBase::~AliTPCcalibBase() {
  //
  // destructor
  //
  if (fDebugLevel>0) printf("AliTPCcalibBase::~AliTPCcalibBase\n");
  if (fDebugStreamer) delete fDebugStreamer;
  fDebugStreamer=0;
}

void  AliTPCcalibBase::Terminate(){
  //
  //
  //
  if (fDebugLevel>0) printf("AliTPCcalibBase::Terminate\n");
  if (fDebugStreamer) delete fDebugStreamer;
  fDebugStreamer = 0;
  return;
}

TTreeSRedirector *AliTPCcalibBase::GetDebugStreamer(){
  //
  // Get Debug streamer
  // In case debug streamer not yet initialized and StreamLevel>0 create new one
  //
  if (fStreamLevel==0) return 0;
  if (fDebugStreamer) return fDebugStreamer;
  TString dsName;
  dsName=GetName();
  dsName+="Debug.root";
  dsName.ReplaceAll(" ",""); 
  fDebugStreamer = new TTreeSRedirector(dsName.Data());
  return fDebugStreamer;
}


void    AliTPCcalibBase::UpdateEventInfo(AliESDEvent * event){
  //
  //
  //
  fRun     = event->GetRunNumber();
  fEvent   = event->GetEventNumberInFile();
  fTime    = event->GetTimeStamp();
  fTrigger = event->GetTriggerMask();
  fMagF    = event->GetMagneticField();
  fTriggerClass = event->GetFiredTriggerClasses().Data();
  fHasLaser = HasLaser(event); 
  
}


Bool_t AliTPCcalibBase::HasLaser(AliESDEvent *event){
  //
  //
  //
  // Use event specie
  Bool_t isLaser=kFALSE;
  UInt_t specie = event->GetEventSpecie();  // select only cosmic events
  if (specie==AliRecoParam::kCalib) {
    isLaser = kTRUE;
  }
  return isLaser;
}


Bool_t AliTPCcalibBase::AcceptTrigger(){
  //
  // Apply trigger mask - Don't do calibration for non proper triggers
  // 
  if (fTriggerMaskReject==(Int_t)fTrigger) return kFALSE;
  if (fTriggerMaskAccept>0 && fTriggerMaskAccept!=(Int_t)fTrigger) return kFALSE;
  if (fHasLaser && fRejectLaser) return kFALSE;
  return kTRUE;
}


void AliTPCcalibBase::RegisterDebugOutput(const char *path){
  //
  // store  - copy debug output to the destination position
  // currently ONLY for local copy
  if (fDebugLevel>0) printf("AliTPCcalibBase::RegisterDebugOutput(%s)\n",path);
  if (fStreamLevel==0) return;
  TString dsName;
  dsName=GetName();
  dsName+="Debug.root";
  dsName.ReplaceAll(" ",""); 
  TString dsName2=path;
  gSystem->MakeDirectory(dsName2.Data());
  dsName2+=gSystem->HostName();
  gSystem->MakeDirectory(dsName2.Data());
  dsName2+="/";
  TTimeStamp s;
  dsName2+=Int_t(s.GetNanoSec());
  dsName2+="/";
  gSystem->MakeDirectory(dsName2.Data());
  dsName2+=dsName;
  AliInfo(Form("copy %s\t%s\n",dsName.Data(),dsName2.Data()));
  printf("copy %s\t%s\n",dsName.Data(),dsName2.Data());
  TFile::Cp(dsName.Data(),dsName2.Data());
}


TGraphErrors * AliTPCcalibBase::FitSlices(THnSparse *h, Int_t axisDim1, Int_t axisDim2, Int_t minEntries, Int_t nmaxBin, Float_t fracLow, Float_t fracUp, Bool_t useMedian, TTreeSRedirector *cstream, Int_t ival){
  //
  // Fitting slices of the projection(axisDim1,axisDim2) of a sparse histogram
  // 
  TF1 funcGaus("funcGaus","gaus");
  TH2D * hist = h->Projection(axisDim1, axisDim2);
  Double_t *xvec = new Double_t[hist->GetNbinsX()];
  Double_t *yvec = new Double_t[hist->GetNbinsX()];
  Double_t *xerr = new Double_t[hist->GetNbinsX()];
  Double_t *yerr = new Double_t[hist->GetNbinsX()];
  Int_t counter  = 0;
  TH1D * projectionHist =0;
  //

  for(Int_t i=1; i <= hist->GetNbinsX(); i++) {
    Int_t nsum=0;
    Int_t imin   =  i;
    Int_t imax   =  i;

    for (Int_t idelta=0; idelta<nmaxBin; idelta++){
      //
      imin   =  TMath::Max(i-idelta,1);
      imax   =  TMath::Min(i+idelta,hist->GetNbinsX());
      nsum = TMath::Nint(hist->Integral(imin,imax,0,hist->GetNbinsY()));
      if (nsum==0) break;
      if (nsum>minEntries) break;
    }
    if (nsum<minEntries) continue;
    //
    hist->GetXaxis()->SetRange(imin,imax);
    projectionHist = hist->ProjectionY("gain",imin,imax);
    // Determine Median:
    Float_t xMin = projectionHist->GetXaxis()->GetXmin();
    Float_t xMax = projectionHist->GetXaxis()->GetXmax();
    Float_t xMedian = (xMin+xMax)*0.5;
    Float_t integral = 0;
    for(Int_t jbin=1; jbin<projectionHist->GetNbinsX()-1; jbin++) {
      integral+=projectionHist->GetBinContent(jbin);
    }
    //printf("Integral %f\t%f\n",integral, projectionHist->GetSum());
    //
    //
    Float_t currentSum=0;
    for(Int_t jbin=1; jbin<projectionHist->GetNbinsX()-1; jbin++) {
      currentSum += projectionHist->GetBinContent(jbin);
      if (currentSum<fracLow*integral) xMin = projectionHist->GetBinCenter(jbin);
      if (currentSum<fracUp*integral)  xMax = projectionHist->GetBinCenter(jbin+1);      
      if (currentSum<0.5*integral && projectionHist->GetBinContent(jbin)>0){
	xMedian = (projectionHist->GetBinCenter(jbin)*projectionHist->GetBinContent(jbin)+
		   projectionHist->GetBinCenter(jbin+1)*projectionHist->GetBinContent(jbin+1))/
	  (projectionHist->GetBinContent(jbin)+projectionHist->GetBinContent(jbin+1));
      }
    }
    //
    Float_t rms  = projectionHist->GetRMS();
    //    i += interval;
    //
    Double_t xcenter =  hist->GetMean(); 
    Double_t xrms    =  hist->GetRMS()+hist->GetXaxis()->GetBinWidth(1)/TMath::Sqrt(12.); 
    Double_t binWidth = projectionHist->GetXaxis()->GetBinWidth(1);
    if (rms>0){
      // cut on +- 4 RMS
      projectionHist->Fit(&funcGaus,"QN","",xMin, xMax);
      Double_t chi2 = funcGaus.GetChisquare();
      //  
      xvec[counter] = xcenter;
      yvec[counter] = funcGaus.GetParameter(ival);
      xerr[counter] = xrms;
      yerr[counter] = funcGaus.GetParError(ival); 
      if (useMedian) yvec[counter] = xMedian;
      if (cstream){
	(*cstream)<<"fitDebug"<<
	  "xcenter="<<xcenter<<
	  "xMin="<<xMin<<
	  "xMax="<<xMax<<
	  "xMedian="<<xMedian<<
	  "xFitM"<<yvec[counter]<<
	  "xFitS"<<yerr[counter]<<
	  "chi2="<<chi2<<	  
	  "\n";
      }
      counter++;
    }else{
      xvec[counter] = xcenter;
      yvec[counter] = xMedian;
      xerr[counter] = xrms;
      yerr[counter] = binWidth/TMath::Sqrt(12.); 
      counter++;
    }
    delete projectionHist;
  }
  
  TGraphErrors * graphErrors = new TGraphErrors(counter, xvec, yvec, xerr, yerr);
  delete [] xvec;
  delete [] yvec;
  delete [] xerr;
  delete [] yerr;
  delete hist;
  return graphErrors;
}


void AliTPCcalibBase::BinLogX(THnSparse *h, Int_t axisDim) {

  // Method for the correct logarithmic binning of histograms

  TAxis *axis = h->GetAxis(axisDim);
  int bins = axis->GetNbins();

  Double_t from = axis->GetXmin();
  Double_t to = axis->GetXmax();
  Double_t *new_bins = new Double_t[bins + 1];

  new_bins[0] = from;
  Double_t factor = pow(to/from, 1./bins);

  for (int i = 1; i <= bins; i++) {
   new_bins[i] = factor * new_bins[i-1];
  }
  axis->Set(bins, new_bins);
  delete [] new_bins;

}
void AliTPCcalibBase::BinLogX(TH1 *h) {

  // Method for the correct logarithmic binning of histograms

  TAxis *axis = h->GetXaxis();
  int bins = axis->GetNbins();

  Double_t from = axis->GetXmin();
  Double_t to = axis->GetXmax();
  Double_t *new_bins = new Double_t[bins + 1];

  new_bins[0] = from;
  Double_t factor = pow(to/from, 1./bins);

  for (int i = 1; i <= bins; i++) {
   new_bins[i] = factor * new_bins[i-1];
  }
  axis->Set(bins, new_bins);
  delete [] new_bins;

}
Commit	Line	Data
3ab35fc5	1	/**************************************************************************
	2	* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
	3	* *
	4	* Author: The ALICE Off-line Project. *
	5	* Contributors are mentioned in the code where appropriate. *
	6	* *
	7	* Permission to use, copy, modify and distribute this software and its *
	8	* documentation strictly for non-commercial purposes is hereby granted *
	9	* without fee, provided that the above copyright notice appears in all *
	10	* copies and that both the copyright notice and this permission notice *
	11	* appear in the supporting documentation. The authors make no claims *
	12	* about the suitability of this software for any purpose. It is *
	13	* provided "as is" without express or implied warranty. *
	14	**************************************************************************/
	15
	16
	17	///////////////////////////////////////////////////////////////////////////////
	18	// //
	19	// Base class for the calibration components using
	20	// as input TPCseeds and ESDs
	21	// Event loop outside of the component
	22	//
	23	//
ae28e92e	24	// Base functionality to be implemeneted by component
	25	/*
	26	//In some cases only one of this function to be implemented
	27	virtual void Process(AliESDEvent *event)
	28	virtual void Process(AliTPCseed *track)
	29	//
	30	virtual Long64_t Merge(TCollection *li);
	31	virtual void Analyze()
	32	void Terminate();
	33	*/
	34	// Functionality provided by base class for Algorith debuging:
	35	// TTreeSRedirector * cstream = GetDebugStreamer() - get debug streamer which can be use for numerical debugging
	36	//
	37
	38
	39
	40	// marian.ivanov@cern.ch
3ab35fc5	41	//
3ab35fc5	42	#include "AliTPCcalibBase.h"
f7f33dec	43	#include "TSystem.h"
f7f33dec	44	#include "TFile.h"
ae28e92e	45	#include "TTreeStream.h"
47328338	46	#include "TTimeStamp.h"
52a5850f	47	#include "TGraph.h"
	48	#include "TGraphErrors.h"
	49	#include "TF1.h"
3226e48f	50	#include "TH1.h"
3226e48f	51	#include "THnSparse.h"
52a5850f	52	#include "TH1D.h"
52a5850f	53	#include "TH2D.h"
3226e48f	54	#include "TAxis.h"
dcf559ff	55	#include "AliRecoParam.h"
52a5850f	56
	57
	58	#include "AliLog.h"
108953e9	59	#include "AliESDEvent.h"
f7f33dec	60
3ab35fc5	61
	62	ClassImp(AliTPCcalibBase)
	63
ae28e92e	64	AliTPCcalibBase::AliTPCcalibBase():
	65	TNamed(),
	66	fDebugStreamer(0),
108953e9	67	fStreamLevel(0),
	68	fRun(0), //! current Run number
	69	fEvent(0), //! current Event number
	70	fTime(0), //! current Time
	71	fTrigger(0), //! current trigger type
	72	fMagF(0), //! current magnetic field
c51653e8	73	fTriggerMaskReject(-1), //trigger mask - reject trigger
c51653e8	74	fTriggerMaskAccept(-1), //trigger mask - accept trigger
2d22fa36	75	fHasLaser(kFALSE), //flag the laser is overlayed with given event
2d22fa36	76	fRejectLaser(kTRUE), //flag- reject laser
15e48021	77	fTriggerClass(),
b842d904	78	fCurrentEvent(0), //! current event
b842d904	79	fCurrentTrack(0), //! current esd track
4486a91f	80	fCurrentFriendTrack(0), //! current esd track
b842d904	81	fCurrentSeed(0), //! current seed
ae28e92e	82	fDebugLevel(0)
3ab35fc5	83	{
	84	//
	85	// Constructor
	86	//
	87	}
	88
8cf12c96	89	AliTPCcalibBase::AliTPCcalibBase(const char * name, const char * title):
	90	TNamed(name,title),
	91	fDebugStreamer(0),
	92	fStreamLevel(0),
	93	fRun(0), //! current Run number
	94	fEvent(0), //! current Event number
	95	fTime(0), //! current Time
	96	fTrigger(0), //! current trigger type
	97	fMagF(0), //! current magnetic field
	98	fTriggerMaskReject(-1), //trigger mask - reject trigger
	99	fTriggerMaskAccept(-1), //trigger mask - accept trigger
	100	fHasLaser(kFALSE), //flag the laser is overlayed with given event
	101	fRejectLaser(kTRUE), //flag- reject laser
15e48021	102	fTriggerClass(),
b842d904	103	fCurrentEvent(0), //! current event
b842d904	104	fCurrentTrack(0), //! current esd track
4486a91f	105	fCurrentFriendTrack(0), //! current esd track
b842d904	106	fCurrentSeed(0), //! current seed
8cf12c96	107	fDebugLevel(0)
	108	{
	109	//
	110	// Constructor
	111	//
	112	}
	113
ae28e92e	114	AliTPCcalibBase::AliTPCcalibBase(const AliTPCcalibBase&calib):
	115	TNamed(calib),
	116	fDebugStreamer(0),
	117	fStreamLevel(calib.fStreamLevel),
e5cbd73f	118	fRun(0), //! current Run number
	119	fEvent(0), //! current Event number
	120	fTime(0), //! current Time
	121	fTrigger(0), //! current trigger type
	122	fMagF(0), //! current magnetic field
c51653e8	123	fTriggerMaskReject(calib.fTriggerMaskReject), //trigger mask - reject trigger
c51653e8	124	fTriggerMaskAccept(calib.fTriggerMaskAccept), //trigger mask - accept trigger
2d22fa36	125	fHasLaser(calib.fHasLaser), //flag the laser is overlayed with given event
2d22fa36	126	fRejectLaser(calib.fRejectLaser), //flag- reject laser
fe8454d9	127	fTriggerClass(calib.fTriggerClass),
b842d904	128	fCurrentEvent(0), //! current event
b842d904	129	fCurrentTrack(0), //! current esd track
4486a91f	130	fCurrentFriendTrack(0), //! current esd track
b842d904	131	fCurrentSeed(0), //! current seed
ae28e92e	132	fDebugLevel(calib.fDebugLevel)
	133	{
	134	//
	135	// copy constructor
	136	//
	137	}
	138
	139	AliTPCcalibBase &AliTPCcalibBase::operator=(const AliTPCcalibBase&calib){
	140	//
4486a91f	141	// operator=
ae28e92e	142	//
	143	((TNamed *)this)->operator=(calib);
	144	fDebugStreamer=0;
	145	fStreamLevel=calib.fStreamLevel;
	146	fDebugLevel=calib.fDebugLevel;
525062ee	147	return *this;
ae28e92e	148	}
	149
	150
3ab35fc5	151	AliTPCcalibBase::~AliTPCcalibBase() {
	152	//
	153	// destructor
	154	//
f7f33dec	155	if (fDebugLevel>0) printf("AliTPCcalibBase::~AliTPCcalibBase\n");
ae28e92e	156	if (fDebugStreamer) delete fDebugStreamer;
	157	fDebugStreamer=0;
	158	}
	159
	160	void AliTPCcalibBase::Terminate(){
	161	//
	162	//
	163	//
f7f33dec	164	if (fDebugLevel>0) printf("AliTPCcalibBase::Terminate\n");
ae28e92e	165	if (fDebugStreamer) delete fDebugStreamer;
	166	fDebugStreamer = 0;
	167	return;
	168	}
	169
	170	TTreeSRedirector *AliTPCcalibBase::GetDebugStreamer(){
	171	//
	172	// Get Debug streamer
	173	// In case debug streamer not yet initialized and StreamLevel>0 create new one
	174	//
	175	if (fStreamLevel==0) return 0;
	176	if (fDebugStreamer) return fDebugStreamer;
	177	TString dsName;
	178	dsName=GetName();
	179	dsName+="Debug.root";
	180	dsName.ReplaceAll(" ","");
	181	fDebugStreamer = new TTreeSRedirector(dsName.Data());
	182	return fDebugStreamer;
3ab35fc5	183	}
f7f33dec	184
f7f33dec	185
108953e9	186	void AliTPCcalibBase::UpdateEventInfo(AliESDEvent * event){
	187	//
	188	//
	189	//
	190	fRun = event->GetRunNumber();
	191	fEvent = event->GetEventNumberInFile();
	192	fTime = event->GetTimeStamp();
	193	fTrigger = event->GetTriggerMask();
	194	fMagF = event->GetMagneticField();
15e48021	195	fTriggerClass = event->GetFiredTriggerClasses().Data();
2d22fa36	196	fHasLaser = HasLaser(event);
15e48021	197
108953e9	198	}
108953e9	199
2d22fa36	200
	201	Bool_t AliTPCcalibBase::HasLaser(AliESDEvent *event){
	202	//
	203	//
	204	//
dcf559ff	205	// Use event specie
	206	Bool_t isLaser=kFALSE;
	207	UInt_t specie = event->GetEventSpecie(); // select only cosmic events
	208	if (specie==AliRecoParam::kCalib) {
	209	isLaser = kTRUE;
2d22fa36	210	}
dcf559ff	211	return isLaser;
2d22fa36	212	}
	213
	214
	215
c51653e8	216	Bool_t AliTPCcalibBase::AcceptTrigger(){
	217	//
	218	// Apply trigger mask - Don't do calibration for non proper triggers
	219	//
2d22fa36	220	if (fTriggerMaskReject==(Int_t)fTrigger) return kFALSE;
	221	if (fTriggerMaskAccept>0 && fTriggerMaskAccept!=(Int_t)fTrigger) return kFALSE;
	222	if (fHasLaser && fRejectLaser) return kFALSE;
c51653e8	223	return kTRUE;
	224	}
	225
	226
f7f33dec	227	void AliTPCcalibBase::RegisterDebugOutput(const char *path){
	228	//
	229	// store - copy debug output to the destination position
	230	// currently ONLY for local copy
	231	if (fDebugLevel>0) printf("AliTPCcalibBase::RegisterDebugOutput(%s)\n",path);
	232	if (fStreamLevel==0) return;
	233	TString dsName;
	234	dsName=GetName();
	235	dsName+="Debug.root";
	236	dsName.ReplaceAll(" ","");
	237	TString dsName2=path;
	238	gSystem->MakeDirectory(dsName2.Data());
	239	dsName2+=gSystem->HostName();
	240	gSystem->MakeDirectory(dsName2.Data());
	241	dsName2+="/";
47328338	242	TTimeStamp s;
	243	dsName2+=Int_t(s.GetNanoSec());
	244	dsName2+="/";
	245	gSystem->MakeDirectory(dsName2.Data());
f7f33dec	246	dsName2+=dsName;
	247	AliInfo(Form("copy %s\t%s\n",dsName.Data(),dsName2.Data()));
	248	printf("copy %s\t%s\n",dsName.Data(),dsName2.Data());
	249	TFile::Cp(dsName.Data(),dsName2.Data());
	250	}
52a5850f	251
	252
	253
70b0f0bf	254	TGraphErrors * AliTPCcalibBase::FitSlices(THnSparse h, Int_t axisDim1, Int_t axisDim2, Int_t minEntries, Int_t nmaxBin, Float_t fracLow, Float_t fracUp, Bool_t useMedian, TTreeSRedirector cstream, Int_t ival){
52a5850f	255	//
	256	// Fitting slices of the projection(axisDim1,axisDim2) of a sparse histogram
	257	//
3d549531	258	TF1 funcGaus("funcGaus","gaus");
52a5850f	259	TH2D * hist = h->Projection(axisDim1, axisDim2);
	260	Double_t *xvec = new Double_t[hist->GetNbinsX()];
	261	Double_t *yvec = new Double_t[hist->GetNbinsX()];
	262	Double_t *xerr = new Double_t[hist->GetNbinsX()];
	263	Double_t *yerr = new Double_t[hist->GetNbinsX()];
	264	Int_t counter = 0;
	265	TH1D * projectionHist =0;
	266	//
	267
6b8ef6d1	268	for(Int_t i=1; i <= hist->GetNbinsX(); i++) {
52a5850f	269	Int_t nsum=0;
	270	Int_t imin = i;
	271	Int_t imax = i;
	272
	273	for (Int_t idelta=0; idelta<nmaxBin; idelta++){
	274	//
	275	imin = TMath::Max(i-idelta,1);
	276	imax = TMath::Min(i+idelta,hist->GetNbinsX());
	277	nsum = TMath::Nint(hist->Integral(imin,imax,0,hist->GetNbinsY()));
	278	if (nsum==0) break;
	279	if (nsum>minEntries) break;
	280	}
	281	if (nsum<minEntries) continue;
	282	//
	283	hist->GetXaxis()->SetRange(imin,imax);
	284	projectionHist = hist->ProjectionY("gain",imin,imax);
	285	// Determine Median:
	286	Float_t xMin = projectionHist->GetXaxis()->GetXmin();
	287	Float_t xMax = projectionHist->GetXaxis()->GetXmax();
	288	Float_t xMedian = (xMin+xMax)*0.5;
d0b31f57	289	Float_t integral = 0;
	290	for(Int_t jbin=1; jbin<projectionHist->GetNbinsX()-1; jbin++) {
	291	integral+=projectionHist->GetBinContent(jbin);
	292	}
7f766801	293	//printf("Integral %f\t%f\n",integral, projectionHist->GetSum());
52a5850f	294	//
	295	//
	296	Float_t currentSum=0;
	297	for(Int_t jbin=1; jbin<projectionHist->GetNbinsX()-1; jbin++) {
	298	currentSum += projectionHist->GetBinContent(jbin);
d0b31f57	299	if (currentSum<fracLow*integral) xMin = projectionHist->GetBinCenter(jbin);
	300	if (currentSum<fracUp*integral) xMax = projectionHist->GetBinCenter(jbin+1);
	301	if (currentSum<0.5*integral && projectionHist->GetBinContent(jbin)>0){
52a5850f	302	xMedian = (projectionHist->GetBinCenter(jbin)*projectionHist->GetBinContent(jbin)+
	303	projectionHist->GetBinCenter(jbin+1)*projectionHist->GetBinContent(jbin+1))/
	304	(projectionHist->GetBinContent(jbin)+projectionHist->GetBinContent(jbin+1));
	305	}
	306	}
	307	//
	308	Float_t rms = projectionHist->GetRMS();
	309	// i += interval;
	310	//
	311	Double_t xcenter = hist->GetMean();
	312	Double_t xrms = hist->GetRMS()+hist->GetXaxis()->GetBinWidth(1)/TMath::Sqrt(12.);
	313	Double_t binWidth = projectionHist->GetXaxis()->GetBinWidth(1);
	314	if (rms>0){
52a5850f	315	// cut on +- 4 RMS
52a5850f	316	projectionHist->Fit(&funcGaus,"QN","",xMin, xMax);
3d549531	317	Double_t chi2 = funcGaus.GetChisquare();
52a5850f	318	//
52a5850f	319	xvec[counter] = xcenter;
70b0f0bf	320	yvec[counter] = funcGaus.GetParameter(ival);
52a5850f	321	xerr[counter] = xrms;
70b0f0bf	322	yerr[counter] = funcGaus.GetParError(ival);
3d549531	323	if (useMedian) yvec[counter] = xMedian;
	324	if (cstream){
	325	(*cstream)<<"fitDebug"<<
	326	"xcenter="<<xcenter<<
	327	"xMin="<<xMin<<
	328	"xMax="<<xMax<<
	329	"xMedian="<<xMedian<<
	330	"xFitM"<<yvec[counter]<<
	331	"xFitS"<<yerr[counter]<<
	332	"chi2="<<chi2<<
	333	"\n";
	334	}
52a5850f	335	counter++;
	336	}else{
	337	xvec[counter] = xcenter;
	338	yvec[counter] = xMedian;
	339	xerr[counter] = xrms;
	340	yerr[counter] = binWidth/TMath::Sqrt(12.);
	341	counter++;
	342	}
	343	delete projectionHist;
	344	}
	345
	346	TGraphErrors * graphErrors = new TGraphErrors(counter, xvec, yvec, xerr, yerr);
	347	delete [] xvec;
	348	delete [] yvec;
	349	delete [] xerr;
	350	delete [] yerr;
	351	delete hist;
	352	return graphErrors;
	353	}
3226e48f	354
	355
	356	void AliTPCcalibBase::BinLogX(THnSparse *h, Int_t axisDim) {
	357
	358	// Method for the correct logarithmic binning of histograms
	359
	360	TAxis *axis = h->GetAxis(axisDim);
	361	int bins = axis->GetNbins();
	362
	363	Double_t from = axis->GetXmin();
	364	Double_t to = axis->GetXmax();
	365	Double_t *new_bins = new Double_t[bins + 1];
	366
	367	new_bins[0] = from;
	368	Double_t factor = pow(to/from, 1./bins);
	369
	370	for (int i = 1; i <= bins; i++) {
	371	new_bins[i] = factor * new_bins[i-1];
	372	}
	373	axis->Set(bins, new_bins);
4ce766eb	374	delete [] new_bins;
3226e48f	375
	376	}
	377	void AliTPCcalibBase::BinLogX(TH1 *h) {
	378
	379	// Method for the correct logarithmic binning of histograms
	380
	381	TAxis *axis = h->GetXaxis();
	382	int bins = axis->GetNbins();
	383
	384	Double_t from = axis->GetXmin();
	385	Double_t to = axis->GetXmax();
	386	Double_t *new_bins = new Double_t[bins + 1];
	387
	388	new_bins[0] = from;
	389	Double_t factor = pow(to/from, 1./bins);
	390
	391	for (int i = 1; i <= bins; i++) {
	392	new_bins[i] = factor * new_bins[i-1];
	393	}
	394	axis->Set(bins, new_bins);
4ce766eb	395	delete [] new_bins;
3226e48f	396
3226e48f	397	}