[u/mrichter/AliRoot.git] / TPC / TPCPEDESTALda.cxx

/*
TPC DA for online calibration

Contact: Haavard.Helstrup@cern.ch
Link:
Run Type: PEDESTAL
DA Type: LDC
Number of events needed: 100
Input Files: 
Output Files: tpcPedestal.root, to be exported to the DAQ FXS
fileId:   pedestals    
Trigger types used: CALIBRATION_EVENT

*/

/*

TPCda_pedestal.cxx - calibration algorithm for TPC pedestal runs

10/06/2007  sylvain.chapeland@cern.ch :  first version - clean skeleton based on DAQ DA case1
19/10/2007  christian.lippmann@cern.ch :  Possibility to write output to ASCII file
24/10/2007  christian.lippmann@cern.ch :  Including pedestal calibration for time bins
23/11/2007  christian.lippmann@cern.ch :  Fix in order to avoid streamer problems in case of
                                          invalid ROOTSTYS. The famous magic line provided by Rene.
28/11/2007  christian.lippmann@cern.ch :  TPC mapping file is read from DaqDetDB
18/09/2008  christian.lippmann@cern.ch :  Noisy channels are output to ASCII file. Use max noise in ALTRO.
19/09/2008  J.Wiechula@gsi.de:            Added export of the calibration data to the AMORE data base.
                                          Added support for configuration files.
31/01/2011  Christian.Lippmann@cern.ch :  Updates for changed setup at P2 with 2 LDCs per sector
26/09/2014  Christian.Lippmann@cern.ch :  Updates for changed setup at P2 1 CRORC per LDC
26/09/2014  Jens.Wiechula@cern.ch      :  comment out obsolete AliTPCRawStream

contact: marian.ivanov@cern.ch

This process reads RAW data from the files provided as command line arguments
and save results in a file (named from RESULT_FILE define - see below).

*/

#define RESULT_FILE  "tpcPedestal.root"
#define FILE_ID "pedestals"
#define MAPPING_FILE "tpcMapping.root"
#define CONFIG_FILE "TPCPEDESTALda.conf"
#define PED_FILE "tpcPedestals.data"
#define NOISE_FILE "tpcNoise.data"
#define PEDMEM_FILE "tpcPedestalMem.data"
#define NOISY_FILE "tpcNoisyChannels.data"
#define VERYNOISY_FILE "tpcVeryNoisyChannels.data"
#define DEAD_FILE "tpcDeadChannels.data"
#define AliDebugLevel() -1

extern "C" {
#include <daqDA.h>
}
#include "event.h"
#include "monitor.h"

#include "stdio.h"
#include "stdlib.h"
#include <fstream>

//
//Root includes
//
#include "TFile.h"
#include "TArrayF.h"
#include "TROOT.h"
#include "TPluginManager.h"
#include "TSystem.h"
#include "TString.h"
#include "TObjString.h"
#include "TDatime.h"
//
//AliRoot includes
//
#include "AliRawReader.h"
#include "AliRawReaderDate.h"
#include "AliTPCmapper.h"
//#include "AliTPCRawStreamV3.h"
#include "AliTPCROC.h"
#include "AliTPCCalROC.h"
#include "AliTPCCalPad.h"
#include "AliMathBase.h"
#include "TTreeStream.h"
#include "AliLog.h"
#include "AliTPCConfigDA.h"

//
//AMORE
//
#include <AmoreDA.h>

//
// TPC calibration algorithm includes
//
#include "AliTPCCalibPedestal.h"

/*
  Main routine, TPC pedestal detector algorithm to be run on TPC LDC
  Arguments: list of DATE raw data files
*/

int main(int argc, char **argv) {
  //
  // Main for TPC pedestal detector algorithm
  //
  /* log start of process */
  printf("TPC DA started - %s\n",__FILE__);
  
  if (argc<2) {
    printf("Wrong number of arguments\n");
    return -1;
  }

  /*
  TString daterolename(gSystem->Getenv("DATE_ROLE_NAME"));
  if ( daterolename == "" ) {
    printf("Error: Variable DATE_ROLE_NAME not defined! Exiting ...\n");
    return -1;
  }
  bool inner;
  if      ( daterolename.EndsWith("-0") ) inner = true;
  else if ( daterolename.EndsWith("-1") ) inner = false;
  else {
    printf("Error: Variable DATE_ROLE_NAME neither ends with -0 nor -1 (E.g. ldc-TPC-C12-1)! Exiting ...\n");
    return -1;
  }
  */

  //AliLog::SetClassDebugLevel("AliTPCRawStreamV3",-5);
  AliLog::SetClassDebugLevel("AliRawReaderDate",-5);
  AliLog::SetClassDebugLevel("AliTPCAltroMapping",-5);
  AliLog::SetModuleDebugLevel("RAW",-5);

  /* magic line */
  gROOT->GetPluginManager()->AddHandler("TVirtualStreamerInfo",
					"*",
					"TStreamerInfo",
					"RIO",
					"TStreamerInfo()");

  /* declare monitoring program */
  int i, status;
  status=monitorDeclareMp( __FILE__ );
  if (status!=0) {
    printf("monitorDeclareMp() failed : %s\n",monitorDecodeError(status));
    return -1;
  }
  
  // variables
  AliTPCmapper *mapping = 0;   // The TPC mapping
  char localfile[255];
  unsigned long32 runNb=0;     // run number
  // configuration options 
  Bool_t timeAnalysis = kTRUE;
  Bool_t fastDecoding = kFALSE;

  if (!mapping){
    /* copy locally the mapping file from daq detector config db */
    sprintf(localfile,"./%s",MAPPING_FILE);
    status = daqDA_DB_getFile(MAPPING_FILE,localfile);
    if (status) {
      printf("Failed to get mapping file (%s) from DAQdetDB, status=%d\n", MAPPING_FILE, status);
      return -1;
    }

    /* open the mapping file and retrieve mapping object */
    TFile *fileMapping = new TFile(MAPPING_FILE, "read");
    mapping = (AliTPCmapper*) fileMapping->Get("tpcMapping");
    delete fileMapping;
  }

  if (mapping == 0) {
    printf("Failed to get mapping object from %s.  ...\n", MAPPING_FILE);
    return -1;
  } else {
    printf("Got mapping object from %s\n", MAPPING_FILE);
  }

  //
  // DA configuration from configuration file
  //
  // retrieve configuration file
  sprintf(localfile,"./%s",CONFIG_FILE);
  status = daqDA_DB_getFile(CONFIG_FILE,localfile);
  if (status) {
    printf("Failed to get configuration file (%s) from DAQdetDB, status=%d\n", CONFIG_FILE, status);
    return -1;
  }
  AliTPCConfigDA config(CONFIG_FILE);
  // check configuration
  Bool_t  skipAmore=kFALSE;

  if ( (Int_t)config.GetValue("NoTimeAnalysis") == 1 ) {
    printf("WARNING: Time analysis was switched off in the configuration file!\n");
    timeAnalysis=kFALSE;
  }

  if ( (Int_t)config.GetValue("UseFastDecoder") == 1 ){
    printf("Info: The fast decoder will be used for the processing.\n");
    fastDecoding=kTRUE;
  }

  if ( config.GetConfigurationMap()->GetValue("SkipAmore") ) {
    skipAmore=((TObjString*)config.GetConfigurationMap()->GetValue("SkipAmore"))->GetString().Atoi();
    printf("TPCPEDESTALda: Skip Amore set in config\n");
  }


  // create calibration object
  AliTPCCalibPedestal calibPedestal(config.GetConfigurationMap()); // pedestal and noise calibration
  calibPedestal.SetAltroMapping(mapping->GetAltroMapping()); // Use altro mapping we got from daqDetDb
  calibPedestal.SetTimeAnalysis(timeAnalysis);               // pedestal(t) calibration 
  
  //===========================//
  // loop over RAW data files //
  //==========================//
  int nevents=0;
  for ( i=1; i<argc; i++ ) {
    
    /* define data source : this is argument i */
    printf("Processing file %s\n", argv[i]);
    status=monitorSetDataSource( argv[i] );
    if (status!=0) {
      printf("monitorSetDataSource() failed. Error=%s. Exiting ...\n", monitorDecodeError(status));
      return -1;
    }
    
    /* read until EOF */
    for ( ; ; ) {
      struct eventHeaderStruct *event;
      
      /* check shutdown condition */
      if (daqDA_checkShutdown()) {break;}
      
      /* get next event (blocking call until timeout) */
      status=monitorGetEventDynamic((void **)&event);
      if (status==MON_ERR_EOF) {
        printf ("End of File %d (%s) detected\n", i, argv[i]);
        break; /* end of monitoring file has been reached */
      }
      
      if (status!=0) {
        printf("monitorGetEventDynamic() failed : %s\n",monitorDecodeError(status));
        break;
      }

      /* retry if got no event */
      if (event==NULL)
        continue;
      
      /* skip start/end of run events */
      if ( (event->eventType != physicsEvent) && (event->eventType != calibrationEvent) )
        continue;

      nevents++;
      // get the run number
      runNb = event->eventRunNb;
      //  Pedestal calibration
      calibPedestal.ProcessEvent(event);

      /* free resources */
      free(event);
    }
  }

  //
  // Analyse pedestals and write them to rootfile
  //
  calibPedestal.Analyse();
  calibPedestal.AnalyseTime(nevents);
  printf ("%d physics/calibration events processed.\n",nevents);

  TFile *fileTPC = new TFile(RESULT_FILE, "recreate");
  calibPedestal.Write("tpcCalibPedestal");
  delete fileTPC;
  printf("Wrote %s.\n",RESULT_FILE);

  /* store the result file on FES */
  status=daqDA_FES_storeFile(RESULT_FILE,FILE_ID);
  if (status) {
    status = -2;
  }
  //
  //Send objects to the AMORE DB
  //
  if (!skipAmore){
    printf ("AMORE part\n");
    const char *amoreDANameorig=gSystem->Getenv("AMORE_DA_NAME");
    //cheet a little -- temporary solution (hopefully)
    //
    //currently amoreDA uses the environment variable AMORE_DA_NAME to create the mysql
    //table in which the calib objects are stored. This table is dropped each time AmoreDA
    //is initialised. This of course makes a problem if we would like to store different
    //calibration entries in the AMORE DB. Therefore in each DA which writes to the AMORE DB
    //the AMORE_DA_NAME env variable is overwritten.

    //find processed sector
    Char_t sideName='A';
    Int_t sector = -1;
    for ( Int_t roc = 0; roc < 72; roc++ ) {
      if ( !calibPedestal.GetCalRocPedestal(roc) ) continue;
      if (mapping->GetSideFromRoc(roc)==1) sideName='C';
      sector = mapping->GetSectorFromRoc(roc);
    }
  //   gSystem->Setenv("AMORE_DA_NAME",Form("TPC-%c%02d-%s",sideName,sector,FILE_ID));
    gSystem->Setenv("AMORE_DA_NAME",Form("%s-%s",gSystem->Getenv("DATE_ROLE_NAME"),FILE_ID));

    //
    // end cheet
    if (sector>-1){
      TDatime time;
      TObjString info(Form("Run: %u; Date: %s",runNb,time.AsSQLString()));

      amore::da::AmoreDA amoreDA(amore::da::AmoreDA::kSender);
      Int_t statusDA=0;
      statusDA+=amoreDA.Send("Pedestals",calibPedestal.GetCalPadPedestal());
      statusDA+=amoreDA.Send("Noise",calibPedestal.GetCalPadRMS());
      statusDA+=amoreDA.Send("Info",&info);
      if ( statusDA )
        printf("Warning: Failed to write one of the calib objects to the AMORE database\n");
    }  else {
      printf("Warning: No data found!\n");
    }
    // reset env var
    if (amoreDANameorig) gSystem->Setenv("AMORE_DA_NAME",amoreDANameorig);
  }
  
  //
  // Now prepare ASCII files for local ALTRO configuration through DDL.
  //
  ofstream pedfile;
  ofstream noisefile;
  ofstream pedmemfile;
  ofstream noisychannelfile;
  ofstream verynoisychannelfile;
  ofstream deadchannelfile;

  pedfile.open(PED_FILE);
  noisefile.open(NOISE_FILE);
  pedmemfile.open(PEDMEM_FILE);
  noisychannelfile.open(NOISY_FILE);
  verynoisychannelfile.open(VERYNOISY_FILE);
  deadchannelfile.open(DEAD_FILE);

  TArrayF **timePed = calibPedestal.GetTimePedestals();  // pedestal values for each time bin

  Int_t ctr_channel = 0;
  Int_t ctr_altro   = 0;
  Int_t ctr_pattern = 0;
  Int_t ctr_noisy   = 0;
  Int_t ctr_vnoisy  = 0;
  Int_t ctr_dead    = 0;

  pedfile              << 10 << std::endl; // Mark file to contain PEDESTALS per channel
  noisefile            << 11 << std::endl; // Mark file to contain NOISE per altro
  pedmemfile           << 12 << std::endl; // Mark file to contain PEDESTALs per time bin
  noisychannelfile     << 14 << std::endl; // Mark file to contain NOISY or DEAD CHANNELS
  verynoisychannelfile << 14 << std::endl; // Mark file to contain NOISY or DEAD CHANNELS
  deadchannelfile      << 14 << std::endl; // Mark file to contain NOISY or DEAD CHANNELS

  // inner==true : calROC from ldc-0 contains: rcus 0,1 for IROC and rcu 2 for OROC 
  // inner==false: calROC from ldc-1 contains: nothing  for IROC and rcus 3,4,5 for OROC 
  for ( Int_t roc = 0; roc < 72; roc++ ) {
    if ( !calibPedestal.GetCalRocPedestal(roc) ) continue;
    bool isIROC  = mapping->IsIROC(roc);
    Int_t side   = mapping->GetSideFromRoc(roc);
    Int_t sector = mapping->GetSectorFromRoc(roc);
    Int_t minrcu, maxrcu;
    if      ( isIROC ) { minrcu=0; maxrcu=1; }
    //else if ( inner  ) { minrcu=2; maxrcu=2; }
    //else               { minrcu=3; maxrcu=5; }
    else               { minrcu=2; maxrcu=5; }
    for ( int rcu = minrcu; rcu <= maxrcu; rcu++ ) {
      //Int_t patch = mapping->IsIROC(roc) ? rcu : rcu+2;
      for ( int branch = 0; branch < 2; branch++ ) {
        for ( int fec = 0; fec < mapping->GetNfec(rcu, branch); fec++ ) {
          for ( int altro = 0; altro < 8; altro++ ) {
            Float_t rms = 0.;
            Float_t maxrms = 0.;
            Float_t ctr_altrochannel = 0.;
            for ( int channel = 0; channel < 16; channel++ ) {
              Int_t hwadd     = mapping->CodeHWAddress(branch, fec, altro, channel);
              Int_t row       = mapping->GetPadRow(rcu, hwadd);        // row in a ROC
              Int_t globalrow = mapping->GetGlobalPadRow(rcu, hwadd);  // row in full sector
              Int_t pad       = mapping->GetPad(rcu, hwadd);
              Float_t ped     = calibPedestal.GetCalRocPedestal(roc)->GetValue(row,pad);
              // fixed pedestal
              pedfile << ctr_channel++ << "\t" << side << "\t" << sector << "\t" << rcu << "\t"
		      << hwadd << "\t" << ped << std::endl;
              // pedestal(t)=pedestal memories
              if ( timePed && fabs(timePed[globalrow][pad].GetSum()) > 1e-10 ) {
                pedmemfile << ctr_pattern++ << "\t" << side << "\t" << sector << "\t" << rcu
                    << "\t" << hwadd;
                for ( Int_t timebin = 0; timebin < 1024; timebin++ )
                  pedmemfile << "\t" << timePed[globalrow][pad].At(timebin);
                pedmemfile << std::endl;
              }
              // rms=noise
              Float_t rms2 = calibPedestal.GetCalRocRMS(roc)->GetValue(row,pad);
              if ( fabs(ped) < 1.e-10 ) {                        // dead channel
                deadchannelfile << ctr_dead++ << "\t" << side << "\t" << sector << "\t"
				<< rcu << "\t" << hwadd << "\t" << rms2 << std::endl;
              } else if ( (ped > 1.e-10) && (rms2 > 1.e-10) ) {  // not dead
		// Find noisy channels
                if ( rms2 > 6.0 ) { // VERY noisy
                  verynoisychannelfile << ctr_vnoisy++ << "\t" << side << "\t" << sector << "\t"
				       << rcu << "\t" << hwadd << "\t" << rms2 << std::endl;
		  
		} else if ( ((roc<36)             && (rms2 > 2.0))  ||  // IROC
			    ((roc>35) && (row<65) && (rms2 > 2.0))  ||  // OROC, small pads
			    ((roc>35) && (row>64) && (rms2 > 3.0)) ) {  // OROC, large pads (50% more signal)
                  noisychannelfile << ctr_noisy++ << "\t" << side << "\t" << sector << "\t"
				   << rcu << "\t" << hwadd << "\t" << rms2 << std::endl;
		} else {
		  // Not noisy. Get average and maximum noise in this ALTRO
		  rms += rms2;
		  ctr_altrochannel += 1.;
		  if (rms2 > maxrms) maxrms = rms2;
		} // end if noisy
              } // end if some signal
            } // end channel for loop
            Int_t hwadd = mapping->CodeHWAddress(branch, fec, altro, 0);   // ALTRO address
	    // Noise data (rms) averaged over all channels in this ALTRO.
            if ( ctr_altrochannel > 1.e-10 ) {
	      /*
	      // average noise of this ALTRO (excluding high-noise channels)
              noisefile << ctr_altro << "\t" << side << "\t" << sector << "\t" << rcu << "\t"
              << hwadd << "\t" << rms/ctr_altrochannel << std::endl;
	      */
	      // maximum noise of this ALTRO (excluding high-noise channels)
              noisefile << ctr_altro << "\t" << side << "\t" << sector << "\t" << rcu << "\t"
			<< hwadd << "\t" << maxrms << std::endl;
              ctr_altro++;
            }
          } // end altro for loop
        } // end fec for loop
      } // end branch for loop
    } // end rcu for loop
  } // end roc loop
  
  pedfile.close();
  noisefile.close();
  pedmemfile.close();
  noisychannelfile.close();
  verynoisychannelfile.close();
  deadchannelfile.close();
  printf("Wrote ASCII files. Found %d noisy, %d very noisy and %d dead channels.\n", ctr_noisy, ctr_vnoisy, ctr_dead);

  return status;

}
Commit	Line	Data
9c754ce7	1	/*
	2	TPC DA for online calibration
	3
	4	Contact: Haavard.Helstrup@cern.ch
	5	Link:
1b37fc95	6	Run Type: PEDESTAL
9c754ce7	7	DA Type: LDC
	8	Number of events needed: 100
	9	Input Files:
	10	Output Files: tpcPedestal.root, to be exported to the DAQ FXS
bd955ed2	11	fileId: pedestals
9c754ce7	12	Trigger types used: CALIBRATION_EVENT
	13
	14	*/
	15
c12208b8	16	/*
	17
	18	TPCda_pedestal.cxx - calibration algorithm for TPC pedestal runs
	19
	20	10/06/2007 sylvain.chapeland@cern.ch : first version - clean skeleton based on DAQ DA case1
49efac78	21	19/10/2007 christian.lippmann@cern.ch : Possibility to write output to ASCII file
	22	24/10/2007 christian.lippmann@cern.ch : Including pedestal calibration for time bins
	23	23/11/2007 christian.lippmann@cern.ch : Fix in order to avoid streamer problems in case of
	24	invalid ROOTSTYS. The famous magic line provided by Rene.
	25	28/11/2007 christian.lippmann@cern.ch : TPC mapping file is read from DaqDetDB
ac940b58	26	18/09/2008 christian.lippmann@cern.ch : Noisy channels are output to ASCII file. Use max noise in ALTRO.
	27	19/09/2008 J.Wiechula@gsi.de: Added export of the calibration data to the AMORE data base.
	28	Added support for configuration files.
e9d80afd	29	31/01/2011 Christian.Lippmann@cern.ch : Updates for changed setup at P2 with 2 LDCs per sector
a1b9c189	30	26/09/2014 Christian.Lippmann@cern.ch : Updates for changed setup at P2 1 CRORC per LDC
a1b9c189	31	26/09/2014 Jens.Wiechula@cern.ch : comment out obsolete AliTPCRawStream
c12208b8	32
	33	contact: marian.ivanov@cern.ch
	34
c12208b8	35	This process reads RAW data from the files provided as command line arguments
	36	and save results in a file (named from RESULT_FILE define - see below).
	37
	38	*/
	39
49efac78	40	#define RESULT_FILE "tpcPedestal.root"
bd955ed2	41	#define FILE_ID "pedestals"
49efac78	42	#define MAPPING_FILE "tpcMapping.root"
ac940b58	43	#define CONFIG_FILE "TPCPEDESTALda.conf"
e9d80afd	44	#define PED_FILE "tpcPedestals.data"
	45	#define NOISE_FILE "tpcNoise.data"
	46	#define PEDMEM_FILE "tpcPedestalMem.data"
	47	#define NOISY_FILE "tpcNoisyChannels.data"
	48	#define VERYNOISY_FILE "tpcVeryNoisyChannels.data"
	49	#define DEAD_FILE "tpcDeadChannels.data"
b401648b	50	#define AliDebugLevel() -1
c12208b8	51
	52	extern "C" {
	53	#include <daqDA.h>
	54	}
	55	#include "event.h"
	56	#include "monitor.h"
49efac78	57
	58	#include "stdio.h"
	59	#include "stdlib.h"
	60	#include <fstream>
c12208b8	61
	62	//
	63	//Root includes
	64	//
49efac78	65	#include "TFile.h"
	66	#include "TArrayF.h"
	67	#include "TROOT.h"
	68	#include "TPluginManager.h"
ac940b58	69	#include "TSystem.h"
	70	#include "TString.h"
	71	#include "TObjString.h"
	72	#include "TDatime.h"
c12208b8	73	//
	74	//AliRoot includes
	75	//
	76	#include "AliRawReader.h"
	77	#include "AliRawReaderDate.h"
87d57858	78	#include "AliTPCmapper.h"
a1b9c189	79	//#include "AliTPCRawStreamV3.h"
c12208b8	80	#include "AliTPCROC.h"
	81	#include "AliTPCCalROC.h"
	82	#include "AliTPCCalPad.h"
	83	#include "AliMathBase.h"
	84	#include "TTreeStream.h"
b401648b	85	#include "AliLog.h"
ac940b58	86	#include "AliTPCConfigDA.h"
	87
	88	//
	89	//AMORE
	90	//
	91	#include <AmoreDA.h>
c12208b8	92
	93	//
	94	// TPC calibration algorithm includes
	95	//
	96	#include "AliTPCCalibPedestal.h"
	97
bdf99a93	98	/*
	99	Main routine, TPC pedestal detector algorithm to be run on TPC LDC
	100	Arguments: list of DATE raw data files
c12208b8	101	*/
bdf99a93	102
c12208b8	103	int main(int argc, char **argv) {
bdf99a93	104	//
	105	// Main for TPC pedestal detector algorithm
	106	//
ac940b58	107	/* log start of process */
	108	printf("TPC DA started - %s\n",__FILE__);
	109
c12208b8	110	if (argc<2) {
	111	printf("Wrong number of arguments\n");
	112	return -1;
	113	}
e9d80afd	114
a1b9c189	115	/*
e9d80afd	116	TString daterolename(gSystem->Getenv("DATE_ROLE_NAME"));
	117	if ( daterolename == "" ) {
	118	printf("Error: Variable DATE_ROLE_NAME not defined! Exiting ...\n");
	119	return -1;
	120	}
	121	bool inner;
	122	if ( daterolename.EndsWith("-0") ) inner = true;
	123	else if ( daterolename.EndsWith("-1") ) inner = false;
	124	else {
	125	printf("Error: Variable DATE_ROLE_NAME neither ends with -0 nor -1 (E.g. ldc-TPC-C12-1)! Exiting ...\n");
	126	return -1;
	127	}
a1b9c189	128	*/
e9d80afd	129
a1b9c189	130	//AliLog::SetClassDebugLevel("AliTPCRawStreamV3",-5);
ac940b58	131	AliLog::SetClassDebugLevel("AliRawReaderDate",-5);
	132	AliLog::SetClassDebugLevel("AliTPCAltroMapping",-5);
	133	AliLog::SetModuleDebugLevel("RAW",-5);
c12208b8	134
49efac78	135	/* magic line */
49efac78	136	gROOT->GetPluginManager()->AddHandler("TVirtualStreamerInfo",
e9d80afd	137	"*",
	138	"TStreamerInfo",
	139	"RIO",
	140	"TStreamerInfo()");
c12208b8	141
c12208b8	142	/* declare monitoring program */
ac940b58	143	int i, status;
c12208b8	144	status=monitorDeclareMp( __FILE__ );
	145	if (status!=0) {
	146	printf("monitorDeclareMp() failed : %s\n",monitorDecodeError(status));
	147	return -1;
	148	}
ac940b58	149
ac940b58	150	// variables
b401648b	151	AliTPCmapper *mapping = 0; // The TPC mapping
ac940b58	152	char localfile[255];
	153	unsigned long32 runNb=0; // run number
	154	// configuration options
	155	Bool_t timeAnalysis = kTRUE;
	156	Bool_t fastDecoding = kFALSE;
	157
b401648b	158	if (!mapping){
b401648b	159	/* copy locally the mapping file from daq detector config db */
ac940b58	160	sprintf(localfile,"./%s",MAPPING_FILE);
ac940b58	161	status = daqDA_DB_getFile(MAPPING_FILE,localfile);
b401648b	162	if (status) {
b401648b	163	printf("Failed to get mapping file (%s) from DAQdetDB, status=%d\n", MAPPING_FILE, status);
ac940b58	164	return -1;
b401648b	165	}
49efac78	166
b401648b	167	/* open the mapping file and retrieve mapping object */
	168	TFile *fileMapping = new TFile(MAPPING_FILE, "read");
	169	mapping = (AliTPCmapper*) fileMapping->Get("tpcMapping");
49efac78	170	delete fileMapping;
b401648b	171	}
	172
	173	if (mapping == 0) {
	174	printf("Failed to get mapping object from %s. ...\n", MAPPING_FILE);
ac940b58	175	return -1;
49efac78	176	} else {
	177	printf("Got mapping object from %s\n", MAPPING_FILE);
	178	}
	179
ac940b58	180	//
	181	// DA configuration from configuration file
	182	//
	183	// retrieve configuration file
	184	sprintf(localfile,"./%s",CONFIG_FILE);
	185	status = daqDA_DB_getFile(CONFIG_FILE,localfile);
	186	if (status) {
	187	printf("Failed to get configuration file (%s) from DAQdetDB, status=%d\n", CONFIG_FILE, status);
	188	return -1;
	189	}
	190	AliTPCConfigDA config(CONFIG_FILE);
	191	// check configuration
6b411ea4	192	Bool_t skipAmore=kFALSE;
6b411ea4	193
ac940b58	194	if ( (Int_t)config.GetValue("NoTimeAnalysis") == 1 ) {
	195	printf("WARNING: Time analysis was switched off in the configuration file!\n");
	196	timeAnalysis=kFALSE;
	197	}
6b411ea4	198
ac940b58	199	if ( (Int_t)config.GetValue("UseFastDecoder") == 1 ){
	200	printf("Info: The fast decoder will be used for the processing.\n");
	201	fastDecoding=kTRUE;
b401648b	202	}
6b411ea4	203
	204	if ( config.GetConfigurationMap()->GetValue("SkipAmore") ) {
	205	skipAmore=((TObjString*)config.GetConfigurationMap()->GetValue("SkipAmore"))->GetString().Atoi();
	206	printf("TPCPEDESTALda: Skip Amore set in config\n");
	207	}
	208
	209
ac940b58	210	// create calibration object
	211	AliTPCCalibPedestal calibPedestal(config.GetConfigurationMap()); // pedestal and noise calibration
	212	calibPedestal.SetAltroMapping(mapping->GetAltroMapping()); // Use altro mapping we got from daqDetDb
30255695	213	calibPedestal.SetTimeAnalysis(timeAnalysis); // pedestal(t) calibration
ac940b58	214
	215	//===========================//
	216	// loop over RAW data files //
	217	//==========================//
c12208b8	218	int nevents=0;
bdf99a93	219	for ( i=1; i<argc; i++ ) {
ac940b58	220
c12208b8	221	/* define data source : this is argument i */
	222	printf("Processing file %s\n", argv[i]);
	223	status=monitorSetDataSource( argv[i] );
	224	if (status!=0) {
49efac78	225	printf("monitorSetDataSource() failed. Error=%s. Exiting ...\n", monitorDecodeError(status));
c12208b8	226	return -1;
c12208b8	227	}
ac940b58	228
c12208b8	229	/* read until EOF */
bdf99a93	230	for ( ; ; ) {
c12208b8	231	struct eventHeaderStruct *event;
ac940b58	232
c12208b8	233	/* check shutdown condition */
c12208b8	234	if (daqDA_checkShutdown()) {break;}
ac940b58	235
c12208b8	236	/* get next event (blocking call until timeout) */
	237	status=monitorGetEventDynamic((void **)&event);
	238	if (status==MON_ERR_EOF) {
ac940b58	239	printf ("End of File %d (%s) detected\n", i, argv[i]);
ac940b58	240	break; /* end of monitoring file has been reached */
c12208b8	241	}
ac940b58	242
c12208b8	243	if (status!=0) {
ac940b58	244	printf("monitorGetEventDynamic() failed : %s\n",monitorDecodeError(status));
ac940b58	245	break;
c12208b8	246	}
	247
	248	/* retry if got no event */
49efac78	249	if (event==NULL)
ac940b58	250	continue;
ac940b58	251
6e7d7dc4	252	/* skip start/end of run events */
	253	if ( (event->eventType != physicsEvent) && (event->eventType != calibrationEvent) )
	254	continue;
	255
c12208b8	256	nevents++;
ac940b58	257	// get the run number
ac940b58	258	runNb = event->eventRunNb;
c12208b8	259	// Pedestal calibration
5312f439	260	calibPedestal.ProcessEvent(event);
c12208b8	261
	262	/* free resources */
	263	free(event);
	264	}
	265	}
	266
49efac78	267	//
	268	// Analyse pedestals and write them to rootfile
	269	//
49efac78	270	calibPedestal.Analyse();
	271	calibPedestal.AnalyseTime(nevents);
	272	printf ("%d physics/calibration events processed.\n",nevents);
c12208b8	273
bdf99a93	274	TFile *fileTPC = new TFile(RESULT_FILE, "recreate");
e73181c9	275	calibPedestal.Write("tpcCalibPedestal");
c12208b8	276	delete fileTPC;
49efac78	277	printf("Wrote %s.\n",RESULT_FILE);
f2c72763	278
ac940b58	279	/* store the result file on FES */
	280	status=daqDA_FES_storeFile(RESULT_FILE,FILE_ID);
	281	if (status) {
	282	status = -2;
	283	}
	284	//
	285	//Send objects to the AMORE DB
	286	//
6b411ea4	287	if (!skipAmore){
	288	printf ("AMORE part\n");
	289	const char *amoreDANameorig=gSystem->Getenv("AMORE_DA_NAME");
	290	//cheet a little -- temporary solution (hopefully)
	291	//
	292	//currently amoreDA uses the environment variable AMORE_DA_NAME to create the mysql
	293	//table in which the calib objects are stored. This table is dropped each time AmoreDA
	294	//is initialised. This of course makes a problem if we would like to store different
	295	//calibration entries in the AMORE DB. Therefore in each DA which writes to the AMORE DB
	296	//the AMORE_DA_NAME env variable is overwritten.
	297
	298	//find processed sector
	299	Char_t sideName='A';
	300	Int_t sector = -1;
	301	for ( Int_t roc = 0; roc < 72; roc++ ) {
	302	if ( !calibPedestal.GetCalRocPedestal(roc) ) continue;
	303	if (mapping->GetSideFromRoc(roc)==1) sideName='C';
	304	sector = mapping->GetSectorFromRoc(roc);
	305	}
	306	// gSystem->Setenv("AMORE_DA_NAME",Form("TPC-%c%02d-%s",sideName,sector,FILE_ID));
	307	gSystem->Setenv("AMORE_DA_NAME",Form("%s-%s",gSystem->Getenv("DATE_ROLE_NAME"),FILE_ID));
	308
	309	//
	310	// end cheet
	311	if (sector>-1){
	312	TDatime time;
	313	TObjString info(Form("Run: %u; Date: %s",runNb,time.AsSQLString()));
	314
	315	amore::da::AmoreDA amoreDA(amore::da::AmoreDA::kSender);
	316	Int_t statusDA=0;
	317	statusDA+=amoreDA.Send("Pedestals",calibPedestal.GetCalPadPedestal());
	318	statusDA+=amoreDA.Send("Noise",calibPedestal.GetCalPadRMS());
	319	statusDA+=amoreDA.Send("Info",&info);
	320	if ( statusDA )
	321	printf("Warning: Failed to write one of the calib objects to the AMORE database\n");
	322	} else {
	323	printf("Warning: No data found!\n");
	324	}
	325	// reset env var
	326	if (amoreDANameorig) gSystem->Setenv("AMORE_DA_NAME",amoreDANameorig);
ffcfd6fa	327	}
ffcfd6fa	328
bdf99a93	329	//
49efac78	330	// Now prepare ASCII files for local ALTRO configuration through DDL.
bdf99a93	331	//
bdf99a93	332	ofstream pedfile;
	333	ofstream noisefile;
	334	ofstream pedmemfile;
ac940b58	335	ofstream noisychannelfile;
e9d80afd	336	ofstream verynoisychannelfile;
e9d80afd	337	ofstream deadchannelfile;
ac940b58	338
e9d80afd	339	pedfile.open(PED_FILE);
	340	noisefile.open(NOISE_FILE);
	341	pedmemfile.open(PEDMEM_FILE);
	342	noisychannelfile.open(NOISY_FILE);
	343	verynoisychannelfile.open(VERYNOISY_FILE);
	344	deadchannelfile.open(DEAD_FILE);
bdf99a93	345
49efac78	346	TArrayF **timePed = calibPedestal.GetTimePedestals(); // pedestal values for each time bin
87d57858	347
bdf99a93	348	Int_t ctr_channel = 0;
ac940b58	349	Int_t ctr_altro = 0;
bdf99a93	350	Int_t ctr_pattern = 0;
ac940b58	351	Int_t ctr_noisy = 0;
e9d80afd	352	Int_t ctr_vnoisy = 0;
	353	Int_t ctr_dead = 0;
	354
	355	pedfile << 10 << std::endl; // Mark file to contain PEDESTALS per channel
	356	noisefile << 11 << std::endl; // Mark file to contain NOISE per altro
	357	pedmemfile << 12 << std::endl; // Mark file to contain PEDESTALs per time bin
	358	noisychannelfile << 14 << std::endl; // Mark file to contain NOISY or DEAD CHANNELS
	359	verynoisychannelfile << 14 << std::endl; // Mark file to contain NOISY or DEAD CHANNELS
	360	deadchannelfile << 14 << std::endl; // Mark file to contain NOISY or DEAD CHANNELS
	361
	362	// inner==true : calROC from ldc-0 contains: rcus 0,1 for IROC and rcu 2 for OROC
	363	// inner==false: calROC from ldc-1 contains: nothing for IROC and rcus 3,4,5 for OROC
bdf99a93	364	for ( Int_t roc = 0; roc < 72; roc++ ) {
bdf99a93	365	if ( !calibPedestal.GetCalRocPedestal(roc) ) continue;
e9d80afd	366	bool isIROC = mapping->IsIROC(roc);
49efac78	367	Int_t side = mapping->GetSideFromRoc(roc);
49efac78	368	Int_t sector = mapping->GetSectorFromRoc(roc);
e9d80afd	369	Int_t minrcu, maxrcu;
e9d80afd	370	if ( isIROC ) { minrcu=0; maxrcu=1; }
a1b9c189	371	//else if ( inner ) { minrcu=2; maxrcu=2; }
	372	//else { minrcu=3; maxrcu=5; }
	373	else { minrcu=2; maxrcu=5; }
e9d80afd	374	for ( int rcu = minrcu; rcu <= maxrcu; rcu++ ) {
e9d80afd	375	//Int_t patch = mapping->IsIROC(roc) ? rcu : rcu+2;
bdf99a93	376	for ( int branch = 0; branch < 2; branch++ ) {
e9d80afd	377	for ( int fec = 0; fec < mapping->GetNfec(rcu, branch); fec++ ) {
ac940b58	378	for ( int altro = 0; altro < 8; altro++ ) {
	379	Float_t rms = 0.;
	380	Float_t maxrms = 0.;
	381	Float_t ctr_altrochannel = 0.;
	382	for ( int channel = 0; channel < 16; channel++ ) {
	383	Int_t hwadd = mapping->CodeHWAddress(branch, fec, altro, channel);
e9d80afd	384	Int_t row = mapping->GetPadRow(rcu, hwadd); // row in a ROC
	385	Int_t globalrow = mapping->GetGlobalPadRow(rcu, hwadd); // row in full sector
	386	Int_t pad = mapping->GetPad(rcu, hwadd);
ac940b58	387	Float_t ped = calibPedestal.GetCalRocPedestal(roc)->GetValue(row,pad);
ac940b58	388	// fixed pedestal
e9d80afd	389	pedfile << ctr_channel++ << "\t" << side << "\t" << sector << "\t" << rcu << "\t"
	390	<< hwadd << "\t" << ped << std::endl;
	391	// pedestal(t)=pedestal memories
ac940b58	392	if ( timePed && fabs(timePed[globalrow][pad].GetSum()) > 1e-10 ) {
e9d80afd	393	pedmemfile << ctr_pattern++ << "\t" << side << "\t" << sector << "\t" << rcu
ac940b58	394	<< "\t" << hwadd;
	395	for ( Int_t timebin = 0; timebin < 1024; timebin++ )
	396	pedmemfile << "\t" << timePed[globalrow][pad].At(timebin);
	397	pedmemfile << std::endl;
	398	}
	399	// rms=noise
	400	Float_t rms2 = calibPedestal.GetCalRocRMS(roc)->GetValue(row,pad);
	401	if ( fabs(ped) < 1.e-10 ) { // dead channel
e9d80afd	402	deadchannelfile << ctr_dead++ << "\t" << side << "\t" << sector << "\t"
e9d80afd	403	<< rcu << "\t" << hwadd << "\t" << rms2 << std::endl;
ac940b58	404	} else if ( (ped > 1.e-10) && (rms2 > 1.e-10) ) { // not dead
e9d80afd	405	// Find noisy channels
	406	if ( rms2 > 6.0 ) { // VERY noisy
	407	verynoisychannelfile << ctr_vnoisy++ << "\t" << side << "\t" << sector << "\t"
	408	<< rcu << "\t" << hwadd << "\t" << rms2 << std::endl;
	409
	410	} else if ( ((roc<36) && (rms2 > 2.0)) \|\| // IROC
	411	((roc>35) && (row<65) && (rms2 > 2.0)) \|\| // OROC, small pads
	412	((roc>35) && (row>64) && (rms2 > 3.0)) ) { // OROC, large pads (50% more signal)
ac940b58	413	noisychannelfile << ctr_noisy++ << "\t" << side << "\t" << sector << "\t"
e9d80afd	414	<< rcu << "\t" << hwadd << "\t" << rms2 << std::endl;
	415	} else {
	416	// Not noisy. Get average and maximum noise in this ALTRO
	417	rms += rms2;
	418	ctr_altrochannel += 1.;
	419	if (rms2 > maxrms) maxrms = rms2;
	420	} // end if noisy
ac940b58	421	} // end if some signal
	422	} // end channel for loop
	423	Int_t hwadd = mapping->CodeHWAddress(branch, fec, altro, 0); // ALTRO address
e9d80afd	424	// Noise data (rms) averaged over all channels in this ALTRO.
ac940b58	425	if ( ctr_altrochannel > 1.e-10 ) {
e9d80afd	426	/*
	427	// average noise of this ALTRO (excluding high-noise channels)
	428	noisefile << ctr_altro << "\t" << side << "\t" << sector << "\t" << rcu << "\t"
ac940b58	429	<< hwadd << "\t" << rms/ctr_altrochannel << std::endl;
e9d80afd	430	*/
	431	// maximum noise of this ALTRO (excluding high-noise channels)
	432	noisefile << ctr_altro << "\t" << side << "\t" << sector << "\t" << rcu << "\t"
	433	<< hwadd << "\t" << maxrms << std::endl;
ac940b58	434	ctr_altro++;
	435	}
	436	} // end altro for loop
	437	} // end fec for loop
bdf99a93	438	} // end branch for loop
	439	} // end rcu for loop
	440	} // end roc loop
ac940b58	441
bdf99a93	442	pedfile.close();
	443	noisefile.close();
	444	pedmemfile.close();
ac940b58	445	noisychannelfile.close();
e9d80afd	446	verynoisychannelfile.close();
	447	deadchannelfile.close();
	448	printf("Wrote ASCII files. Found %d noisy, %d very noisy and %d dead channels.\n", ctr_noisy, ctr_vnoisy, ctr_dead);
87d57858	449
c12208b8	450	return status;
ac940b58	451
c12208b8	452	}