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1 /**************************************************************************\r
2  * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *\r
3  *                                                                        *\r
4  * Author: The ALICE Off-line Project.                                    *\r
5  * Contributors are mentioned in the code where appropriate.              *\r
6  *                                                                        *\r
7  * Permission to use, copy, modify and distribute this software and its   *\r
8  * documentation strictly for non-commercial purposes is hereby granted   *\r
9  * without fee, provided that the above copyright notice appears in all   *\r
10  * copies and that both the copyright notice and this permission notice   *\r
11  * appear in the supporting documentation. The authors make no claims     *\r
12  * about the suitability of this software for any purpose. It is          *\r
13  * provided "as is" without express or implied warranty.                  *\r
14  **************************************************************************/\r
15 \r
16 /* $Id: AliAnalysisTaskESDfilter.cxx 24535 2008-03-16 22:43:30Z fca $ */\r
17  \r
18 #include <TChain.h>\r
19 #include <TTree.h>\r
20 #include <TList.h>\r
21 #include <TArrayI.h>\r
22 #include <TRandom.h>\r
23 #include <TParticle.h>\r
24 \r
25 #include "AliAnalysisTaskESDfilter.h"\r
26 #include "AliAnalysisManager.h"\r
27 #include "AliESDEvent.h"\r
28 #include "AliESDRun.h"\r
29 #include "AliStack.h"\r
30 #include "AliAODEvent.h"\r
31 #include "AliMCEvent.h"\r
32 #include "AliMCEventHandler.h"\r
33 #include "AliESDInputHandler.h"\r
34 #include "AliAODHandler.h"\r
35 #include "AliAODMCParticle.h"\r
36 #include "AliAnalysisFilter.h"\r
37 #include "AliESDMuonTrack.h"\r
38 #include "AliESDVertex.h"\r
39 #include "AliESDv0.h"\r
40 #include "AliESDkink.h"\r
41 #include "AliESDcascade.h"\r
42 #include "AliESDPmdTrack.h"\r
43 #include "AliESDCaloCluster.h"\r
44 #include "AliESDCaloCells.h"\r
45 #include "AliMultiplicity.h"\r
46 #include "AliLog.h"\r
47 \r
48 ClassImp(AliAnalysisTaskESDfilter)\r
49 \r
50 ////////////////////////////////////////////////////////////////////////\r
51 \r
52 AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter():\r
53     AliAnalysisTaskSE(),\r
54     fTrackFilter(0x0),\r
55     fKinkFilter(0x0),\r
56     fV0Filter(0x0),\r
57     fCascadeFilter(0x0),\r
58     fHighPthreshold(0),\r
59     fPtshape(0x0),\r
60     fEnableFillAOD(kTRUE)\r
61 {\r
62   // Default constructor\r
63 }\r
64 \r
65 AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter(const char* name):\r
66     AliAnalysisTaskSE(name),\r
67     fTrackFilter(0x0),\r
68     fKinkFilter(0x0),\r
69     fV0Filter(0x0),\r
70     fCascadeFilter(0x0),\r
71     fHighPthreshold(0),\r
72     fPtshape(0x0),\r
73     fEnableFillAOD(kTRUE)\r
74 {\r
75   // Constructor\r
76 }\r
77 \r
78 void AliAnalysisTaskESDfilter::UserCreateOutputObjects()\r
79 {\r
80   //\r
81   // Create Output Objects conenct filter to outputtree\r
82   // \r
83   if(OutputTree()){\r
84     OutputTree()->GetUserInfo()->Add(fTrackFilter);\r
85   }\r
86   else{\r
87     AliError("No OutputTree() for adding the track filter");\r
88   }\r
89 }\r
90 \r
91 void AliAnalysisTaskESDfilter::Init()\r
92 {\r
93     // Initialization\r
94     if (fDebug > 1) AliInfo("Init() \n");\r
95     // Call configuration file\r
96 }\r
97 \r
98 \r
99 void AliAnalysisTaskESDfilter::UserExec(Option_t */*option*/)\r
100 {\r
101 // Execute analysis for current event\r
102 //\r
103                                             \r
104   Long64_t ientry = Entry();\r
105   \r
106   if (fDebug > 0) {\r
107       printf("Filter: Analysing event # %5d\n", (Int_t) ientry);\r
108       if (fHighPthreshold == 0) AliInfo("detector PID signals are stored in each track");\r
109       if (!fPtshape) AliInfo("detector PID signals are not stored below the pt threshold");\r
110   }\r
111   // Filters must explicitely enable AOD filling in their UserExec (AG)\r
112   if (!AliAnalysisManager::GetAnalysisManager()->GetOutputEventHandler()) AliFatal("Cannot run ESD filter without an output event handler");\r
113   if(fEnableFillAOD) AliAnalysisManager::GetAnalysisManager()->GetOutputEventHandler()->SetFillAOD(kTRUE);\r
114 \r
115   ConvertESDtoAOD();\r
116 }\r
117 \r
118 void AliAnalysisTaskESDfilter::ConvertESDtoAOD() {\r
119     // ESD Filter analysis task executed for each event\r
120 \r
121     AliESDEvent* esd = dynamic_cast<AliESDEvent*>(InputEvent());\r
122     AliESD*      old = esd->GetAliESDOld();\r
123 \r
124     // Fetch Stack for debuggging if available \r
125     AliStack *pStack = 0;\r
126     AliMCEventHandler *mcH = 0;\r
127     if(MCEvent()){\r
128       pStack = MCEvent()->Stack();\r
129       mcH = (AliMCEventHandler*) ((AliAnalysisManager::GetAnalysisManager())->GetMCtruthEventHandler()); \r
130     }\r
131     // set arrays and pointers\r
132     Float_t posF[3];\r
133     Double_t pos[3];\r
134     Double_t p[3];\r
135     Double_t momPos[3]; \r
136     Double_t momNeg[3];\r
137     Double_t momBach[3];\r
138     Double_t momPosAtV0vtx[3];\r
139     Double_t momNegAtV0vtx[3];\r
140     Double_t momBachAtCascadeVtx[3];\r
141     Double_t covVtx[6];\r
142     Double_t covTr[21];\r
143     Double_t pid[10];\r
144 \r
145     for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;\r
146     for (Int_t i = 0; i < 21; i++) covTr [i] = 0.;\r
147 \r
148     \r
149     // loop over events and fill them\r
150     // Multiplicity information needed by the header (to be revised!)\r
151     Int_t nTracks    = esd->GetNumberOfTracks();\r
152     for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) esd->GetTrack(iTrack)->SetESDEvent(esd);\r
153 \r
154     //    if (fDebug > 0) printf("-------------------Bo: Number of ESD tracks %d \n",nTracks);\r
155 \r
156     Int_t nPosTracks = 0;\r
157     \r
158     // Update the header\r
159 \r
160     AliAODHeader* header = AODEvent()->GetHeader();\r
161     \r
162     header->SetRunNumber(esd->GetRunNumber());\r
163     header->SetOfflineTrigger(fInputHandler->IsEventSelected()); // propagate the decision of the physics selection\r
164     if (old) {\r
165         header->SetBunchCrossNumber(0);\r
166         header->SetOrbitNumber(0);\r
167         header->SetPeriodNumber(0);\r
168         header->SetEventType(0);\r
169         header->SetMuonMagFieldScale(-999.);\r
170         header->SetCentrality(-999.);       \r
171     } else {\r
172         header->SetBunchCrossNumber(esd->GetBunchCrossNumber());\r
173         header->SetOrbitNumber(esd->GetOrbitNumber());\r
174         header->SetPeriodNumber(esd->GetPeriodNumber());\r
175         header->SetEventType(esd->GetEventType());\r
176         header->SetCentrality(-999.);        // FIXME\r
177     }\r
178     // Trigger\r
179     header->SetFiredTriggerClasses(esd->GetFiredTriggerClasses());\r
180     header->SetTriggerMask(esd->GetTriggerMask()); \r
181     header->SetTriggerCluster(esd->GetTriggerCluster());\r
182     \r
183 \r
184     header->SetMagneticField(esd->GetMagneticField());\r
185     header->SetMuonMagFieldScale(esd->GetCurrentDip()/6000.);\r
186     header->SetZDCN1Energy(esd->GetZDCN1Energy());\r
187     header->SetZDCP1Energy(esd->GetZDCP1Energy());\r
188     header->SetZDCN2Energy(esd->GetZDCN2Energy());\r
189     header->SetZDCP2Energy(esd->GetZDCP2Energy());\r
190     header->SetZDCEMEnergy(esd->GetZDCEMEnergy(0),esd->GetZDCEMEnergy(1));\r
191 \r
192     \r
193     Float_t diamxy[2]={esd->GetDiamondX(),esd->GetDiamondY()};\r
194     Float_t diamcov[3]; esd->GetDiamondCovXY(diamcov);\r
195     header->SetDiamond(diamxy,diamcov);\r
196     header->SetDiamondZ(esd->GetDiamondZ(),esd->GetSigma2DiamondZ());\r
197 //\r
198 //\r
199     Int_t nV0s      = esd->GetNumberOfV0s();\r
200     Int_t nCascades = esd->GetNumberOfCascades();\r
201     Int_t nKinks    = esd->GetNumberOfKinks();\r
202     Int_t nVertices = nV0s + nCascades /*V0 wihtin cascade already counted*/+ nKinks + 1 /* = prim. vtx*/;\r
203     Int_t nPileSPDVertices=1+esd->GetNumberOfPileupVerticesSPD(); // also SPD main vertex\r
204     Int_t nPileTrkVertices=esd->GetNumberOfPileupVerticesTracks();\r
205     nVertices+=nPileSPDVertices;\r
206     nVertices+=nPileTrkVertices;\r
207     Int_t nJets     = 0;\r
208     Int_t nCaloClus = esd->GetNumberOfCaloClusters();\r
209     Int_t nFmdClus  = 0;\r
210     Int_t nPmdClus  = esd->GetNumberOfPmdTracks();\r
211     \r
212     if (fDebug > 0) \r
213         printf("   NV0=%d  NCASCADES=%d  NKINKS=%d\n", nV0s, nCascades, nKinks);\r
214        \r
215     AODEvent()->ResetStd(nTracks, nVertices, nV0s, nCascades, nJets, nCaloClus, nFmdClus, nPmdClus);\r
216 \r
217 \r
218     AliAODTrack   *aodTrack       = 0x0;\r
219     AliAODPid     *detpid         = 0x0;\r
220     Double_t      timezero        = 0;   //TO BE FIXED\r
221     AliAODVertex  *vV0FromCascade = 0x0;\r
222     AliAODv0      *aodV0          = 0x0;\r
223     AliAODcascade *aodCascade     = 0x0;\r
224     \r
225     // RefArray to store the mapping between esd track number and newly created AOD-Track\r
226     TRefArray   *aodTrackRefs = NULL;\r
227     if (nTracks > 0) aodTrackRefs = new TRefArray(nTracks);\r
228 \r
229     // RefArray to store a mapping between esd V0 number and newly created AOD-Vertex V0\r
230     TRefArray   *aodV0VtxRefs = NULL;\r
231     if (nV0s > 0) aodV0VtxRefs = new TRefArray(nV0s);\r
232 \r
233     // RefArray to store the mapping between esd V0 number and newly created AOD-V0\r
234     TRefArray   *aodV0Refs = NULL;\r
235     if (nV0s > 0) aodV0Refs = new TRefArray(nV0s);\r
236 \r
237     \r
238 \r
239 \r
240 \r
241     // Array to take into account the tracks already added to the AOD\r
242     Bool_t * usedTrack = NULL;\r
243     if (nTracks>0) {\r
244         usedTrack = new Bool_t[nTracks];\r
245         for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) usedTrack[iTrack]=kFALSE;\r
246     }\r
247     // Array to take into account the V0s already added to the AOD (V0 within cascades)\r
248     Bool_t * usedV0 = NULL;\r
249     if (nV0s>0) {\r
250         usedV0 = new Bool_t[nV0s];\r
251         for (Int_t iV0=0; iV0<nV0s; ++iV0) usedV0[iV0]=kFALSE;\r
252     }\r
253     // Array to take into account the kinks already added to the AOD\r
254     Bool_t * usedKink = NULL;\r
255     if (nKinks>0) {\r
256         usedKink = new Bool_t[nKinks];\r
257         for (Int_t iKink=0; iKink<nKinks; ++iKink) usedKink[iKink]=kFALSE;\r
258     }\r
259     \r
260     // Access to the AOD container of vertices\r
261     TClonesArray &vertices = *(AODEvent()->GetVertices());\r
262     Int_t jVertices=0;\r
263     \r
264     // Access to the AOD container of tracks\r
265     TClonesArray &tracks = *(AODEvent()->GetTracks());\r
266     Int_t jTracks=0; \r
267     \r
268     // Access to the AOD container of Cascades\r
269     TClonesArray &cascades = *(AODEvent()->GetCascades());\r
270     Int_t jCascades=0;\r
271 \r
272     // Access to the AOD container of V0s\r
273     TClonesArray &v0s = *(AODEvent()->GetV0s());\r
274     Int_t jV0s=0;\r
275     \r
276     // Add primary vertex. The primary tracks will be defined\r
277     // after the loops on the composite objects (V0, cascades, kinks)\r
278     const AliESDVertex *vtx = esd->GetPrimaryVertex();\r
279     \r
280     vtx->GetXYZ(pos); // position\r
281     vtx->GetCovMatrix(covVtx); //covariance matrix\r
282     \r
283     AliAODVertex * primary = new(vertices[jVertices++])\r
284         AliAODVertex(pos, covVtx, vtx->GetChi2toNDF(), NULL, -1, AliAODVertex::kPrimary);\r
285     primary->SetName(vtx->GetName());\r
286     primary->SetTitle(vtx->GetTitle());\r
287 \r
288     TString vtitle = vtx->GetTitle();\r
289     if (!vtitle.Contains("VertexerTracks")) \r
290       primary->SetNContributors(vtx->GetNContributors());\r
291 \r
292     if (fDebug > 0) primary->Print();\r
293 \r
294 \r
295     // Add SPD "main" vertex \r
296     const AliESDVertex *vtxS = esd->GetPrimaryVertexSPD();\r
297     vtxS->GetXYZ(pos); // position\r
298     vtxS->GetCovMatrix(covVtx); //covariance matrix\r
299     AliAODVertex * mVSPD = new(vertices[jVertices++])\r
300       AliAODVertex(pos, covVtx, vtxS->GetChi2toNDF(), NULL, -1, AliAODVertex::kMainSPD);\r
301     mVSPD->SetName(vtxS->GetName());\r
302     mVSPD->SetTitle(vtxS->GetTitle());\r
303     mVSPD->SetNContributors(vtxS->GetNContributors()); \r
304 \r
305     // Add SPD pileup vertices\r
306     for(Int_t iV=0; iV<nPileSPDVertices-1; iV++){\r
307       const AliESDVertex *vtxP = esd->GetPileupVertexSPD(iV);\r
308       vtxP->GetXYZ(pos); // position\r
309       vtxP->GetCovMatrix(covVtx); //covariance matrix\r
310       AliAODVertex * pVSPD =  new(vertices[jVertices++])\r
311         AliAODVertex(pos, covVtx, vtxP->GetChi2toNDF(), NULL, -1, AliAODVertex::kPileupSPD);\r
312       pVSPD->SetName(vtxP->GetName());\r
313       pVSPD->SetTitle(vtxP->GetTitle());\r
314       pVSPD->SetNContributors(vtxP->GetNContributors()); \r
315     }\r
316 \r
317     // Add TRK pileup vertices\r
318     for(Int_t iV=0; iV<nPileTrkVertices; iV++){\r
319       const AliESDVertex *vtxP = esd->GetPileupVertexTracks(iV);\r
320       vtxP->GetXYZ(pos); // position\r
321       vtxP->GetCovMatrix(covVtx); //covariance matrix\r
322       AliAODVertex * pVTRK = new(vertices[jVertices++])\r
323         AliAODVertex(pos, covVtx, vtxP->GetChi2toNDF(), NULL, -1, AliAODVertex::kPileupTracks);\r
324       pVTRK->SetName(vtxP->GetName());\r
325       pVTRK->SetTitle(vtxP->GetTitle());\r
326       pVTRK->SetNContributors(vtxP->GetNContributors());\r
327     }\r
328 \r
329     // Create vertices starting from the most complex objects\r
330     Double_t chi2 = 0.;\r
331     \r
332     // Cascades (Modified by A.Maire - February 2009)\r
333     for (Int_t nCascade = 0; nCascade < nCascades; ++nCascade) {\r
334 \r
335         if (fDebug > 1) \r
336         printf("\n ******** Cascade number : %d/%d *********\n", nCascade, nCascades);\r
337 \r
338         // 0- Preparation\r
339         //\r
340         AliESDcascade *esdCascade = esd->GetCascade(nCascade);\r
341                 Int_t  idxPosFromV0Dghter  = esdCascade->GetPindex();\r
342                 Int_t  idxNegFromV0Dghter  = esdCascade->GetNindex();\r
343                 Int_t  idxBachFromCascade  = esdCascade->GetBindex();\r
344         \r
345         AliESDtrack  *esdCascadePos  = esd->GetTrack( idxPosFromV0Dghter);\r
346         AliESDtrack  *esdCascadeNeg  = esd->GetTrack( idxNegFromV0Dghter);\r
347         AliESDtrack  *esdCascadeBach = esd->GetTrack( idxBachFromCascade);\r
348 \r
349         // Identification of the V0 within the esdCascade (via both daughter track indices)\r
350         AliESDv0 * currentV0   = 0x0;\r
351         Int_t      idxV0FromCascade = -1;\r
352         \r
353         for (Int_t iV0=0; iV0<nV0s; ++iV0) {\r
354         \r
355                          currentV0 = esd->GetV0(iV0);\r
356                 Int_t posCurrentV0 = currentV0->GetPindex();\r
357                 Int_t negCurrentV0 = currentV0->GetNindex();\r
358         \r
359                 if (posCurrentV0==idxPosFromV0Dghter && negCurrentV0==idxNegFromV0Dghter) {\r
360                 idxV0FromCascade = iV0;\r
361                 break;\r
362                 }\r
363         }\r
364 \r
365         if(idxV0FromCascade < 0){\r
366                 printf("Cascade - no matching for the V0 (index V0 = -1) ! Skip ... \n");\r
367                 continue;\r
368         }// a priori, useless check, but safer ... in case of pb with tracks "out of bounds"\r
369 \r
370         if (fDebug > 1) \r
371                 printf("Cascade %d - V0fromCascade ind : %d/%d\n", nCascade, idxV0FromCascade, nV0s);\r
372 \r
373         AliESDv0 *esdV0FromCascade   = esd->GetV0(idxV0FromCascade);\r
374         \r
375 \r
376         // 1 - Cascade selection \r
377         \r
378         //      AliESDVertex *esdPrimVtx = new AliESDVertex(*(esd->GetPrimaryVertex()));\r
379         //      TList cascadeObjects;\r
380         //      cascadeObjects.AddAt(esdV0FromCascade, 0);\r
381         //      cascadeObjects.AddAt(esdCascadePos,    1);\r
382         //      cascadeObjects.AddAt(esdCascadeNeg,    2);\r
383         //      cascadeObjects.AddAt(esdCascade,       3);\r
384         //      cascadeObjects.AddAt(esdCascadeBach,   4);\r
385         //      cascadeObjects.AddAt(esdPrimVtx,       5);\r
386         // \r
387         //      UInt_t selectCascade = 0;\r
388         //      if (fCascadeFilter) {\r
389         //        // selectCascade = fCascadeFilter->IsSelected(&cascadeObjects); \r
390         //              // FIXME AliESDCascadeCuts to be implemented ...\r
391         // \r
392         //              // Here we may encounter a moot point at the V0 level \r
393         //              // between the cascade selections and the V0 ones :\r
394         //              // the V0 selected along with the cascade (secondary V0) may \r
395         //              // usually be removed from the dedicated V0 selections (prim V0) ...\r
396         //              // -> To be discussed !\r
397         // \r
398         //        // this is a little awkward but otherwise the \r
399         //        // list wants to access the pointer (delete it) \r
400         //        // again when going out of scope\r
401         //        delete cascadeObjects.RemoveAt(5); // esdPrimVtx created via copy construct\r
402         //        esdPrimVtx = 0;\r
403         //        if (!selectCascade) \r
404         //          continue;\r
405         //      }\r
406         //      else{\r
407         //        delete cascadeObjects.RemoveAt(5); // esdPrimVtx created via copy construct\r
408         //        esdPrimVtx = 0;\r
409         //      }\r
410 \r
411         // 2 - Add the cascade vertex\r
412         \r
413         esdCascade->GetXYZcascade(pos[0], pos[1], pos[2]);\r
414         esdCascade->GetPosCovXi(covVtx);\r
415         chi2 = esdCascade->GetChi2Xi(); \r
416         \r
417         AliAODVertex *vCascade = new(vertices[jVertices++]) AliAODVertex( pos,\r
418                                                                           covVtx,\r
419                                                                           chi2, // FIXME = Chi2/NDF will be needed\r
420                                                                           primary,\r
421                                                                           nCascade, // id\r
422                                                                           AliAODVertex::kCascade);\r
423         primary->AddDaughter(vCascade);\r
424 \r
425         if (fDebug > 2) {\r
426                 printf("---- Cascade / Cascade Vertex (AOD) : \n");\r
427                 vCascade->Print();\r
428         }\r
429 \r
430 \r
431         // 3 - Add the bachelor track from the cascade\r
432         \r
433         if (!usedTrack[idxBachFromCascade]) {\r
434 \r
435         esdCascadeBach->GetPxPyPz(momBach);\r
436         esdCascadeBach->GetXYZ(pos);\r
437         esdCascadeBach->GetCovarianceXYZPxPyPz(covTr);\r
438         esdCascadeBach->GetESDpid(pid);\r
439 \r
440             usedTrack[idxBachFromCascade] = kTRUE;\r
441             UInt_t selectInfo = 0;\r
442             if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadeBach);\r
443             if(mcH)mcH->SelectParticle(esdCascadeBach->GetLabel());\r
444             aodTrack = new(tracks[jTracks++]) AliAODTrack(esdCascadeBach->GetID(),\r
445                                                           esdCascadeBach->GetLabel(), \r
446                                                           momBach, \r
447                                                           kTRUE,\r
448                                                           pos,\r
449                                                           kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
450                                                           covTr, \r
451                                                           (Short_t)esdCascadeBach->GetSign(),\r
452                                                           esdCascadeBach->GetITSClusterMap(), \r
453                                                           pid,\r
454                                                           vCascade,\r
455                                                           kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
456                                                           vtx->UsesTrack(esdCascadeBach->GetID()),\r
457                                                           AliAODTrack::kSecondary,\r
458                                                           selectInfo);\r
459             aodTrack->SetTPCClusterMap(esdCascadeBach->GetTPCClusterMap());\r
460             aodTrack->SetTPCSharedMap (esdCascadeBach->GetTPCSharedMap());\r
461             aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadeBach));\r
462             aodTrackRefs->AddAt(aodTrack,idxBachFromCascade);\r
463             \r
464             if (esdCascadeBach->GetSign() > 0) nPosTracks++;\r
465             aodTrack->ConvertAliPIDtoAODPID();\r
466             aodTrack->SetFlags(esdCascadeBach->GetStatus());\r
467             SetAODPID(esdCascadeBach,aodTrack,detpid,timezero,esd->GetMagneticField());\r
468         }\r
469         else {\r
470             aodTrack = dynamic_cast<AliAODTrack*>( aodTrackRefs->At(idxBachFromCascade) );\r
471         }\r
472 \r
473         vCascade->AddDaughter(aodTrack);\r
474 \r
475         if (fDebug > 4) {\r
476                 printf("---- Cascade / bach dghter : \n");\r
477                 aodTrack->Print();\r
478         }\r
479         \r
480 \r
481         // 4 - Add the V0 from the cascade. \r
482         // = V0vtx + both pos and neg daughter tracks + the aodV0 itself\r
483         //\r
484 \r
485         if ( !usedV0[idxV0FromCascade] ) {\r
486         // 4.A - if VO structure hasn't been created yet\r
487                 \r
488                 // 4.A.1 - Create the V0 vertex of the cascade\r
489         \r
490                 esdV0FromCascade->GetXYZ(pos[0], pos[1], pos[2]);\r
491                 esdV0FromCascade->GetPosCov(covVtx);\r
492                 chi2 = esdV0FromCascade->GetChi2V0();  // = chi2/NDF since NDF = 2*2-3 ?\r
493                         \r
494                 vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,\r
495                                                                         covVtx,\r
496                                                                         chi2,\r
497                                                                         vCascade,\r
498                                                                         idxV0FromCascade, //id of ESDv0\r
499                                                                         AliAODVertex::kV0);\r
500                 // Note:\r
501                 //    one V0 can be used by several cascades.\r
502                 // So, one AOD V0 vtx can have several parent vtx.\r
503                 // This is not directly allowed by AliAODvertex.\r
504                 // Setting the parent vtx (here = param "vCascade") doesn't lead to a crash\r
505                 // but to a problem of consistency within AODEvent.\r
506                 // -> See below paragraph 4.B, for the proposed treatment of such a case.\r
507 \r
508                 // Add the vV0FromCascade to the aodVOVtxRefs\r
509                 aodV0VtxRefs->AddAt(vV0FromCascade,idxV0FromCascade);\r
510                 \r
511                 \r
512                 // 4.A.2 - Add the positive tracks from the V0\r
513                 \r
514                 esdCascadePos->GetPxPyPz(momPos);\r
515                 esdCascadePos->GetXYZ(pos);\r
516                 esdCascadePos->GetCovarianceXYZPxPyPz(covTr);\r
517                 esdCascadePos->GetESDpid(pid);\r
518                 \r
519         \r
520                 if (!usedTrack[idxPosFromV0Dghter]) {\r
521                 usedTrack[idxPosFromV0Dghter] = kTRUE;\r
522         \r
523                 UInt_t selectInfo = 0;\r
524                 if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadePos);\r
525                 if(mcH) mcH->SelectParticle(esdCascadePos->GetLabel());\r
526                 aodTrack = new(tracks[jTracks++]) AliAODTrack(  esdCascadePos->GetID(),\r
527                                                                 esdCascadePos->GetLabel(), \r
528                                                                 momPos, \r
529                                                                 kTRUE,\r
530                                                                 pos,\r
531                                                                 kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
532                                                                 covTr, \r
533                                                                 (Short_t)esdCascadePos->GetSign(),\r
534                                                                 esdCascadePos->GetITSClusterMap(), \r
535                                                                 pid,\r
536                                                                 vV0FromCascade,\r
537                                                                 kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
538                                                                 vtx->UsesTrack(esdCascadePos->GetID()),\r
539                                                                 AliAODTrack::kSecondary,\r
540                                                                 selectInfo);\r
541                 aodTrack->SetTPCClusterMap(esdCascadePos->GetTPCClusterMap());\r
542                 aodTrack->SetTPCSharedMap (esdCascadePos->GetTPCSharedMap());\r
543                 aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadePos));\r
544                 aodTrackRefs->AddAt(aodTrack,idxPosFromV0Dghter);\r
545 \r
546                 if (esdCascadePos->GetSign() > 0) nPosTracks++;\r
547                 aodTrack->ConvertAliPIDtoAODPID();\r
548                 aodTrack->SetFlags(esdCascadePos->GetStatus());\r
549                 SetAODPID(esdCascadePos,aodTrack,detpid,timezero,esd->GetMagneticField());\r
550                 }\r
551                 else {\r
552                         aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(idxPosFromV0Dghter));\r
553                 }\r
554                 vV0FromCascade->AddDaughter(aodTrack);\r
555         \r
556         \r
557                 // 4.A.3 - Add the negative tracks from the V0\r
558                 \r
559                 esdCascadeNeg->GetPxPyPz(momNeg);\r
560                 esdCascadeNeg->GetXYZ(pos);\r
561                 esdCascadeNeg->GetCovarianceXYZPxPyPz(covTr);\r
562                 esdCascadeNeg->GetESDpid(pid);\r
563                 \r
564                 \r
565                 if (!usedTrack[idxNegFromV0Dghter]) {\r
566                 usedTrack[idxNegFromV0Dghter] = kTRUE;\r
567         \r
568                 UInt_t selectInfo = 0;\r
569                 if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadeNeg);\r
570                 if(mcH)mcH->SelectParticle(esdCascadeNeg->GetLabel());\r
571                 aodTrack = new(tracks[jTracks++]) AliAODTrack(  esdCascadeNeg->GetID(),\r
572                                                                 esdCascadeNeg->GetLabel(),\r
573                                                                 momNeg,\r
574                                                                 kTRUE,\r
575                                                                 pos,\r
576                                                                 kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
577                                                                 covTr, \r
578                                                                 (Short_t)esdCascadeNeg->GetSign(),\r
579                                                                 esdCascadeNeg->GetITSClusterMap(), \r
580                                                                 pid,\r
581                                                                 vV0FromCascade,\r
582                                                                 kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
583                                                                 vtx->UsesTrack(esdCascadeNeg->GetID()),\r
584                                                                 AliAODTrack::kSecondary,\r
585                                                                 selectInfo);\r
586                 aodTrack->SetTPCClusterMap(esdCascadeNeg->GetTPCClusterMap());\r
587                 aodTrack->SetTPCSharedMap (esdCascadeNeg->GetTPCSharedMap());\r
588                 aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadeNeg));\r
589                 aodTrackRefs->AddAt(aodTrack,idxNegFromV0Dghter);\r
590                 \r
591                 if (esdCascadeNeg->GetSign() > 0) nPosTracks++;\r
592                 aodTrack->ConvertAliPIDtoAODPID();\r
593                 aodTrack->SetFlags(esdCascadeNeg->GetStatus());\r
594                 SetAODPID(esdCascadeNeg,aodTrack,detpid,timezero,esd->GetMagneticField());\r
595                 }\r
596                 else {\r
597                         aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(idxNegFromV0Dghter));\r
598                 }\r
599         \r
600                 vV0FromCascade->AddDaughter(aodTrack);\r
601         \r
602                         \r
603                 // 4.A.4 - Add the V0 from cascade to the V0 array\r
604 \r
605                 Double_t  dcaV0Daughters      = esdV0FromCascade->GetDcaV0Daughters();\r
606                 Double_t  dcaV0ToPrimVertex   = esdV0FromCascade->GetD( esd->GetPrimaryVertex()->GetX(),\r
607                                                                         esd->GetPrimaryVertex()->GetY(),\r
608                                                                         esd->GetPrimaryVertex()->GetZ() );\r
609                 esdV0FromCascade->GetPPxPyPz( momPosAtV0vtx[0],momPosAtV0vtx[1],momPosAtV0vtx[2] ); \r
610                 esdV0FromCascade->GetNPxPyPz( momNegAtV0vtx[0],momNegAtV0vtx[1],momNegAtV0vtx[2] ); \r
611         \r
612                 Double_t dcaDaughterToPrimVertex[2] = { 999., 999.}; // ..[0] = DCA in (x,y) for Pos and ..[1] = Neg\r
613                 dcaDaughterToPrimVertex[0] = TMath::Abs(esdCascadePos->GetD(    esd->GetPrimaryVertex()->GetX(),\r
614                                                                                 esd->GetPrimaryVertex()->GetY(),\r
615                                                                                 esd->GetMagneticField())        );\r
616                 dcaDaughterToPrimVertex[1] = TMath::Abs(esdCascadeNeg->GetD(    esd->GetPrimaryVertex()->GetX(),\r
617                                                                                 esd->GetPrimaryVertex()->GetY(),\r
618                                                                                 esd->GetMagneticField())        );\r
619                 \r
620                 aodV0 = new(v0s[jV0s++]) AliAODv0( vV0FromCascade, \r
621                                                    dcaV0Daughters,\r
622                                                    dcaV0ToPrimVertex, \r
623                                                    momPosAtV0vtx, \r
624                                                    momNegAtV0vtx, \r
625                                                    dcaDaughterToPrimVertex); \r
626                 // set the aod v0 on-the-fly status\r
627                 aodV0->SetOnFlyStatus(esdV0FromCascade->GetOnFlyStatus());\r
628 \r
629                 // Add the aodV0 to the aodVORefs\r
630                 aodV0Refs->AddAt(aodV0,idxV0FromCascade);\r
631                 \r
632         usedV0[idxV0FromCascade] = kTRUE;\r
633 \r
634         } else { \r
635         // 4.B - if V0 structure already used\r
636 \r
637                 // Note :\r
638                 //    one V0 can be used by several cascades (frequent in PbPb evts) : \r
639                 // same V0 which used but attached to different bachelor tracks\r
640                 // -> aodVORefs and aodV0VtxRefs are needed.\r
641                 // Goal : avoid a redundancy of the info in "Vertices" and "v0s" clones array.\r
642         \r
643                 vV0FromCascade = dynamic_cast<AliAODVertex*>( aodV0VtxRefs->At(idxV0FromCascade) );\r
644                 aodV0          = dynamic_cast<AliAODv0*>    ( aodV0Refs   ->At(idxV0FromCascade) );\r
645                  \r
646                 // - Treatment of the parent for such a "re-used" V0 :\r
647                 // Insert the cascade that reuses the V0 vertex in the lineage chain\r
648                 // Before : vV0 -> vCascade1 -> vPrimary\r
649                 //  - Hyp : cascade2 uses the same V0 as cascade1\r
650                 //  After :  vV0 -> vCascade2 -> vCascade1 -> vPrimary\r
651                 \r
652                 AliAODVertex *vCascadePreviousParent = dynamic_cast<AliAODVertex*> (vV0FromCascade->GetParent());\r
653                         vV0FromCascade->SetParent(vCascade);\r
654                         vCascade      ->SetParent(vCascadePreviousParent);\r
655 \r
656                 if(fDebug > 2)  \r
657                         printf("---- Cascade / Lineage insertion\n"\r
658                                 "Parent of V0 vtx                 = Cascade vtx %p\n"\r
659                                 "Parent of the cascade vtx        = Cascade vtx %p\n"\r
660                                 "Parent of the parent cascade vtx = Cascade vtx %p\n", \r
661                                                 static_cast<void*> (vV0FromCascade->GetParent()),\r
662                                                 static_cast<void*> (vCascade->GetParent()),\r
663                                                 static_cast<void*> (vCascadePreviousParent->GetParent()) );\r
664                 \r
665         }// end if V0 structure already used\r
666 \r
667         if (fDebug > 2) {\r
668                 printf("---- Cascade / V0 vertex: \n");\r
669                 vV0FromCascade->Print();\r
670         }\r
671 \r
672         if (fDebug > 4) {\r
673                 printf("---- Cascade / pos dghter : \n");\r
674                         aodTrack->Print();\r
675                 printf("---- Cascade / neg dghter : \n");\r
676                         aodTrack->Print();\r
677                 printf("---- Cascade / aodV0 : \n");\r
678                         aodV0->Print();\r
679         }\r
680 \r
681         // In any case (used V0 or not), add the V0 vertex to the cascade one.\r
682         vCascade->AddDaughter(vV0FromCascade);  \r
683         \r
684                 \r
685         // 5 - Add the primary track of the cascade (if any)\r
686 \r
687 \r
688         // 6 - Add the cascade to the AOD array of cascades\r
689 \r
690         Double_t dcaBachToPrimVertexXY = TMath::Abs(esdCascadeBach->GetD(esd->GetPrimaryVertex()->GetX(),\r
691                                                                          esd->GetPrimaryVertex()->GetY(),\r
692                                                                          esd->GetMagneticField())        );\r
693 \r
694         esdCascade->GetBPxPyPz(momBachAtCascadeVtx[0], momBachAtCascadeVtx[1], momBachAtCascadeVtx[2]);\r
695 \r
696         aodCascade = new(cascades[jCascades++]) AliAODcascade(  vCascade,\r
697                                                                 esdCascade->Charge(),\r
698                                                                 esdCascade->GetDcaXiDaughters(),\r
699                                                                 -999.,\r
700                 // DCAXiToPrimVtx -> needs to be calculated   ----|\r
701                 // doesn't exist at ESD level;\r
702                 // See AODcascade::DcaXiToPrimVertex(Double, Double, Double)\r
703                                                                 dcaBachToPrimVertexXY,\r
704                                                                 momBachAtCascadeVtx,\r
705                                                                 *aodV0);\r
706         \r
707         if (fDebug > 3) {\r
708                 printf("---- Cascade / AOD cascade : \n\n");\r
709                 aodCascade->PrintXi(primary->GetX(), primary->GetY(), primary->GetZ());\r
710         }\r
711 \r
712     } // end of the loop on cascades\r
713 \r
714     cascades.Expand(jCascades);\r
715 \r
716 \r
717     //\r
718     // V0s\r
719     //\r
720     \r
721     for (Int_t nV0 = 0; nV0 < nV0s; ++nV0) {\r
722         \r
723         if (usedV0[nV0]) continue; // skip if already added to the AOD\r
724         \r
725         AliESDv0 *v0 = esd->GetV0(nV0);\r
726         Int_t posFromV0 = v0->GetPindex();\r
727         Int_t negFromV0 = v0->GetNindex();\r
728         \r
729         // V0 selection \r
730         //\r
731         AliESDVertex *esdVtx   = new AliESDVertex(*(esd->GetPrimaryVertex()));\r
732         AliESDtrack  *esdV0Pos = esd->GetTrack(posFromV0);\r
733         AliESDtrack  *esdV0Neg = esd->GetTrack(negFromV0);\r
734         TList v0objects;\r
735         v0objects.AddAt(v0,                      0);\r
736         v0objects.AddAt(esdV0Pos,                1);\r
737         v0objects.AddAt(esdV0Neg,                2);\r
738         v0objects.AddAt(esdVtx,                  3);\r
739         UInt_t selectV0 = 0;\r
740         if (fV0Filter) {\r
741           selectV0 = fV0Filter->IsSelected(&v0objects);\r
742           // this is a little awkward but otherwise the \r
743           // list wants to access the pointer (delete it) \r
744           // again when going out of scope\r
745           delete v0objects.RemoveAt(3); // esdVtx created via copy construct\r
746           esdVtx = 0;\r
747           if (!selectV0) \r
748             continue;\r
749         }\r
750         else{\r
751           delete v0objects.RemoveAt(3); // esdVtx created via copy construct\r
752           esdVtx = 0;\r
753         }\r
754     \r
755         v0->GetXYZ(pos[0], pos[1], pos[2]);\r
756 \r
757         if (!old) {\r
758             chi2 = v0->GetChi2V0(); // = chi2/NDF since NDF = 2*2-3\r
759             v0->GetPosCov(covVtx);\r
760         } else {\r
761             chi2 = -999.;\r
762             for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;\r
763         }\r
764 \r
765 \r
766         AliAODVertex * vV0 = \r
767           new(vertices[jVertices++]) AliAODVertex(pos,\r
768                                                   covVtx,\r
769                                                   chi2,\r
770                                                   primary,\r
771                                                   nV0,\r
772                                                   AliAODVertex::kV0);\r
773         primary->AddDaughter(vV0);\r
774         \r
775 \r
776         // Add the positive tracks from the V0\r
777         \r
778         esdV0Pos->GetPxPyPz(momPos);\r
779         esdV0Pos->GetXYZ(pos);\r
780         esdV0Pos->GetCovarianceXYZPxPyPz(covTr);\r
781         esdV0Pos->GetESDpid(pid);\r
782         \r
783         if (!usedTrack[posFromV0]) {\r
784             usedTrack[posFromV0] = kTRUE;\r
785             UInt_t selectInfo = 0;\r
786             if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Pos);\r
787             if(mcH)mcH->SelectParticle(esdV0Pos->GetLabel());\r
788             aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Pos->GetID(),\r
789                                                           esdV0Pos->GetLabel(), \r
790                                                           momPos, \r
791                                                           kTRUE,\r
792                                                           pos,\r
793                                                           kFALSE,\r
794                                                           covTr, \r
795                                                           (Short_t)esdV0Pos->GetSign(),\r
796                                                           esdV0Pos->GetITSClusterMap(), \r
797                                                           pid,\r
798                                                           vV0,\r
799                                                           kTRUE,  // check if this is right\r
800                                                           vtx->UsesTrack(esdV0Pos->GetID()),\r
801                                                           AliAODTrack::kSecondary,\r
802                                                           selectInfo);\r
803             aodTrack->SetTPCClusterMap(esdV0Pos->GetTPCClusterMap());\r
804             aodTrack->SetTPCSharedMap (esdV0Pos->GetTPCSharedMap());\r
805             aodTrack->SetChi2perNDF(Chi2perNDF(esdV0Pos));\r
806             aodTrackRefs->AddAt(aodTrack,posFromV0);\r
807             //      if (fDebug > 0) printf("-------------------Bo: pos track from original pt %.3f \n",aodTrack->Pt());\r
808             if (esdV0Pos->GetSign() > 0) nPosTracks++;\r
809             aodTrack->ConvertAliPIDtoAODPID();\r
810             aodTrack->SetFlags(esdV0Pos->GetStatus());\r
811             SetAODPID(esdV0Pos,aodTrack,detpid,timezero,esd->GetMagneticField());\r
812         }\r
813         else {\r
814             aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(posFromV0));\r
815             //      if (fDebug > 0) printf("-------------------Bo pos track from refArray pt %.3f \n",aodTrack->Pt());\r
816         }\r
817         vV0->AddDaughter(aodTrack);\r
818     \r
819         // Add the negative tracks from the V0\r
820         \r
821         esdV0Neg->GetPxPyPz(momNeg);\r
822         esdV0Neg->GetXYZ(pos);\r
823         esdV0Neg->GetCovarianceXYZPxPyPz(covTr);\r
824         esdV0Neg->GetESDpid(pid);\r
825         \r
826         if (!usedTrack[negFromV0]) {\r
827             usedTrack[negFromV0] = kTRUE;\r
828             UInt_t selectInfo = 0;\r
829             if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Neg);\r
830             if(mcH)mcH->SelectParticle(esdV0Neg->GetLabel());\r
831             aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Neg->GetID(),\r
832                                                           esdV0Neg->GetLabel(),\r
833                                                           momNeg,\r
834                                                           kTRUE,\r
835                                                           pos,\r
836                                                           kFALSE,\r
837                                                           covTr, \r
838                                                           (Short_t)esdV0Neg->GetSign(),\r
839                                                           esdV0Neg->GetITSClusterMap(), \r
840                                                           pid,\r
841                                                           vV0,\r
842                                                           kTRUE,  // check if this is right\r
843                                                           vtx->UsesTrack(esdV0Neg->GetID()),\r
844                                                           AliAODTrack::kSecondary,\r
845                                                           selectInfo);\r
846             aodTrack->SetTPCClusterMap(esdV0Neg->GetTPCClusterMap());\r
847             aodTrack->SetTPCSharedMap (esdV0Neg->GetTPCSharedMap());\r
848             aodTrack->SetChi2perNDF(Chi2perNDF(esdV0Neg));\r
849             \r
850             aodTrackRefs->AddAt(aodTrack,negFromV0);\r
851             //      if (fDebug > 0) printf("-------------------Bo: neg track from original pt %.3f \n",aodTrack->Pt());\r
852             if (esdV0Neg->GetSign() > 0) nPosTracks++;\r
853             aodTrack->ConvertAliPIDtoAODPID();\r
854             aodTrack->SetFlags(esdV0Neg->GetStatus());\r
855             SetAODPID(esdV0Neg,aodTrack,detpid,timezero,esd->GetMagneticField());\r
856         }\r
857         else {\r
858             aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(negFromV0));\r
859             //      if (fDebug > 0) printf("-------------------Bo neg track from refArray pt %.3f \n",aodTrack->Pt());\r
860         }\r
861         vV0->AddDaughter(aodTrack);\r
862 \r
863 \r
864         // Add the V0 the V0 array as well\r
865         \r
866         Double_t  dcaV0Daughters      = v0->GetDcaV0Daughters();\r
867         Double_t  dcaV0ToPrimVertex   = v0->GetD(esd->GetPrimaryVertex()->GetX(),\r
868                                                  esd->GetPrimaryVertex()->GetY(),\r
869                                                  esd->GetPrimaryVertex()->GetZ());\r
870         v0->GetPPxPyPz(momPosAtV0vtx[0],momPosAtV0vtx[1],momPosAtV0vtx[2]); \r
871         v0->GetNPxPyPz(momNegAtV0vtx[0],momNegAtV0vtx[1],momNegAtV0vtx[2]); \r
872         \r
873         Double_t dcaDaughterToPrimVertex[2] = { 999., 999.}; // ..[0] = DCA in (x,y) for Pos and ..[1] = Neg\r
874         dcaDaughterToPrimVertex[0] = TMath::Abs(esdV0Pos->GetD(  esd->GetPrimaryVertex()->GetX(),\r
875                                                                  esd->GetPrimaryVertex()->GetY(),\r
876                                                                         esd->GetMagneticField()) );\r
877         dcaDaughterToPrimVertex[1] = TMath::Abs(esdV0Neg->GetD(  esd->GetPrimaryVertex()->GetX(),\r
878                                                                  esd->GetPrimaryVertex()->GetY(),\r
879                                                                         esd->GetMagneticField()) );\r
880         \r
881         aodV0 = new(v0s[jV0s++]) AliAODv0(vV0, \r
882                                         dcaV0Daughters,\r
883                                         dcaV0ToPrimVertex,\r
884                                         momPosAtV0vtx,\r
885                                         momNegAtV0vtx,\r
886                                         dcaDaughterToPrimVertex);\r
887 \r
888         // set the aod v0 on-the-fly status\r
889         aodV0->SetOnFlyStatus(v0->GetOnFlyStatus());\r
890     }//End of loop on V0s \r
891 \r
892     v0s.Expand(jV0s);    \r
893 \r
894     if (fDebug > 0)   printf("   NAODCascades=%d / NAODV0s=%d\n", jCascades, jV0s);\r
895     // end of V0 parts\r
896 \r
897 \r
898     // Kinks: it is a big mess the access to the information in the kinks\r
899     // The loop is on the tracks in order to find the mother and daugther of each kink\r
900     \r
901     \r
902     for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) {\r
903         \r
904         AliESDtrack * esdTrack = esd->GetTrack(iTrack);\r
905         \r
906         Int_t ikink = esdTrack->GetKinkIndex(0);\r
907         \r
908         if (ikink && nKinks) {\r
909             // Negative kink index: mother, positive: daughter\r
910             \r
911             // Search for the second track of the kink\r
912             \r
913             for (Int_t jTrack = iTrack+1; jTrack<nTracks; ++jTrack) {\r
914                 \r
915                 AliESDtrack * esdTrack1 = esd->GetTrack(jTrack);\r
916                 \r
917                 Int_t jkink = esdTrack1->GetKinkIndex(0);\r
918                 \r
919                 if ( TMath::Abs(ikink)==TMath::Abs(jkink) ) {\r
920                     \r
921                     // The two tracks are from the same kink\r
922                     \r
923                     if (usedKink[TMath::Abs(ikink)-1]) continue; // skip used kinks\r
924                     \r
925                     Int_t imother = -1;\r
926                     Int_t idaughter = -1;\r
927                     \r
928                     if (ikink<0 && jkink>0) {\r
929                         \r
930                         imother = iTrack;\r
931                         idaughter = jTrack;\r
932                     }\r
933                     else if (ikink>0 && jkink<0) {\r
934                         \r
935                         imother = jTrack;\r
936                         idaughter = iTrack;\r
937                     }\r
938                     else {\r
939 //                      cerr << "Error: Wrong combination of kink indexes: "\r
940 //                           << ikink << " " << jkink << endl;\r
941                         continue;\r
942                     }\r
943                     \r
944                     // Add the mother track if it passed primary track selection cuts\r
945                     \r
946                     AliAODTrack * mother = NULL;\r
947                     \r
948                     UInt_t selectInfo = 0;\r
949                     if (fTrackFilter) {\r
950                         selectInfo = fTrackFilter->IsSelected(esd->GetTrack(imother));\r
951                         if (!selectInfo) continue;\r
952                     }\r
953                     \r
954                     if (!usedTrack[imother]) {\r
955                         \r
956                         usedTrack[imother] = kTRUE;\r
957                         \r
958                         AliESDtrack *esdTrackM = esd->GetTrack(imother);\r
959                         esdTrackM->GetPxPyPz(p);\r
960                         esdTrackM->GetXYZ(pos);\r
961                         esdTrackM->GetCovarianceXYZPxPyPz(covTr);\r
962                         esdTrackM->GetESDpid(pid);\r
963                         if(mcH)mcH->SelectParticle(esdTrackM->GetLabel());\r
964                         mother = \r
965                             new(tracks[jTracks++]) AliAODTrack(esdTrackM->GetID(),\r
966                                                                esdTrackM->GetLabel(),\r
967                                                                p,\r
968                                                                kTRUE,\r
969                                                                pos,\r
970                                                                kFALSE,\r
971                                                                covTr, \r
972                                                                (Short_t)esdTrackM->GetSign(),\r
973                                                                esdTrackM->GetITSClusterMap(), \r
974                                                                pid,\r
975                                                                primary,\r
976                                                                kTRUE, // check if this is right\r
977                                                                vtx->UsesTrack(esdTrack->GetID()),\r
978                                                                AliAODTrack::kPrimary,\r
979                                                                selectInfo);\r
980                         mother->SetTPCClusterMap(esdTrackM->GetTPCClusterMap());\r
981                         mother->SetTPCSharedMap (esdTrackM->GetTPCSharedMap());\r
982                         mother->SetChi2perNDF(Chi2perNDF(esdTrackM));\r
983 \r
984                         aodTrackRefs->AddAt(mother, imother);\r
985                         \r
986                         if (esdTrackM->GetSign() > 0) nPosTracks++;\r
987                         mother->SetFlags(esdTrackM->GetStatus());\r
988                         mother->ConvertAliPIDtoAODPID();\r
989                         primary->AddDaughter(mother);\r
990                         mother->ConvertAliPIDtoAODPID();\r
991                         SetAODPID(esdTrackM,mother,detpid,timezero,esd->GetMagneticField());\r
992                     }\r
993                     else {\r
994 //                      cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1\r
995 //                           << " track " << imother << " has already been used!" << endl;\r
996                   }\r
997                     \r
998                     // Add the kink vertex\r
999                     AliESDkink * kink = esd->GetKink(TMath::Abs(ikink)-1);\r
1000                     \r
1001                     AliAODVertex * vkink = \r
1002                         new(vertices[jVertices++]) AliAODVertex(kink->GetPosition(),\r
1003                                                                 NULL,\r
1004                                                                 0.,\r
1005                                                                 mother,\r
1006                                                                 esdTrack->GetID(),  // This is the track ID of the mother's track!\r
1007                                                                 AliAODVertex::kKink);\r
1008                     // Add the daughter track\r
1009                   \r
1010                     AliAODTrack * daughter = NULL;\r
1011                     \r
1012                     if (!usedTrack[idaughter]) {\r
1013                         \r
1014                         usedTrack[idaughter] = kTRUE;\r
1015                         \r
1016                         AliESDtrack *esdTrackD = esd->GetTrack(idaughter);\r
1017                         esdTrackD->GetPxPyPz(p);\r
1018                         esdTrackD->GetXYZ(pos);\r
1019                         esdTrackD->GetCovarianceXYZPxPyPz(covTr);\r
1020                         esdTrackD->GetESDpid(pid);\r
1021                         selectInfo = 0;\r
1022                         if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdTrackD);\r
1023                         if(mcH)mcH->SelectParticle(esdTrackD->GetLabel());\r
1024                         daughter = \r
1025                             new(tracks[jTracks++]) AliAODTrack(esdTrackD->GetID(),\r
1026                                                                esdTrackD->GetLabel(),\r
1027                                                                p,\r
1028                                                                kTRUE,\r
1029                                                                pos,\r
1030                                                                kFALSE,\r
1031                                                                covTr, \r
1032                                                                (Short_t)esdTrackD->GetSign(),\r
1033                                                                esdTrackD->GetITSClusterMap(), \r
1034                                                                pid,\r
1035                                                                vkink,\r
1036                                                                kTRUE, // check if this is right\r
1037                                                                vtx->UsesTrack(esdTrack->GetID()),\r
1038                                                                AliAODTrack::kSecondary,\r
1039                                                                selectInfo);\r
1040                         daughter->SetTPCClusterMap(esdTrackD->GetTPCClusterMap());\r
1041                         daughter->SetTPCSharedMap (esdTrackD->GetTPCSharedMap());\r
1042                         aodTrackRefs->AddAt(daughter, idaughter);\r
1043                         \r
1044                         if (esdTrackD->GetSign() > 0) nPosTracks++;\r
1045                         daughter->SetFlags(esdTrackD->GetStatus());\r
1046                         daughter->ConvertAliPIDtoAODPID();\r
1047                         vkink->AddDaughter(daughter);\r
1048                         daughter->ConvertAliPIDtoAODPID();\r
1049                        SetAODPID(esdTrackD,daughter,detpid,timezero,esd->GetMagneticField());\r
1050                     }\r
1051                     else {\r
1052 //                      cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1\r
1053 //                           << " track " << idaughter << " has already been used!" << endl;\r
1054                     }\r
1055                 }\r
1056             }\r
1057         }      \r
1058     }\r
1059     \r
1060   \r
1061     // Tracks (primary and orphan)\r
1062 \r
1063     if (fDebug > 0) printf("NUMBER OF ESD TRACKS %5d\n", nTracks);\r
1064     \r
1065     for (Int_t nTrack = 0; nTrack < nTracks; ++nTrack) {\r
1066         \r
1067         \r
1068         if (usedTrack[nTrack]) continue;\r
1069 \r
1070         AliESDtrack *esdTrack = esd->GetTrack(nTrack);\r
1071         UInt_t selectInfo = 0;\r
1072         //\r
1073         // Track selection\r
1074         if (fTrackFilter) {\r
1075             selectInfo = fTrackFilter->IsSelected(esdTrack);\r
1076             if (!selectInfo && !vtx->UsesTrack(esdTrack->GetID())) continue;\r
1077         }\r
1078         \r
1079         //\r
1080         esdTrack->GetPxPyPz(p);\r
1081         esdTrack->GetXYZ(pos);\r
1082         esdTrack->GetCovarianceXYZPxPyPz(covTr);\r
1083         esdTrack->GetESDpid(pid);\r
1084         if(mcH)mcH->SelectParticle(esdTrack->GetLabel());\r
1085         primary->AddDaughter(aodTrack =\r
1086                              new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),\r
1087                                                                 esdTrack->GetLabel(),\r
1088                                                                 p,\r
1089                                                                 kTRUE,\r
1090                                                                 pos,\r
1091                                                                 kFALSE,\r
1092                                                                 covTr, \r
1093                                                                 (Short_t)esdTrack->GetSign(),\r
1094                                                                 esdTrack->GetITSClusterMap(), \r
1095                                                                 pid,\r
1096                                                                 primary,\r
1097                                                                 kTRUE, // check if this is right\r
1098                                                                 vtx->UsesTrack(esdTrack->GetID()),\r
1099                                                                 AliAODTrack::kPrimary, \r
1100                                                                 selectInfo)\r
1101                              );\r
1102         aodTrack->SetTPCClusterMap(esdTrack->GetTPCClusterMap());\r
1103         aodTrack->SetTPCSharedMap (esdTrack->GetTPCSharedMap());\r
1104         aodTrack->SetChi2perNDF(Chi2perNDF(esdTrack));\r
1105 \r
1106         aodTrackRefs->AddAt(aodTrack, nTrack);\r
1107 \r
1108         \r
1109         if (esdTrack->GetSign() > 0) nPosTracks++;\r
1110         aodTrack->SetFlags(esdTrack->GetStatus());\r
1111         aodTrack->ConvertAliPIDtoAODPID();\r
1112         SetAODPID(esdTrack,aodTrack,detpid,timezero,esd->GetMagneticField());\r
1113     } // end of loop on tracks\r
1114     \r
1115     // Update number of AOD tracks in header at the end of track loop (M.G.)\r
1116     header->SetRefMultiplicity(jTracks);\r
1117     header->SetRefMultiplicityPos(nPosTracks);\r
1118     header->SetRefMultiplicityNeg(jTracks - nPosTracks);\r
1119     if (fDebug > 0) \r
1120       printf("   NAODTRACKS=%d  NPOS=%d  NNEG=%d\n", jTracks, nPosTracks, jTracks - nPosTracks);\r
1121     // Do not shrink the array of tracks - other filters may add to it (M.G)\r
1122     //   tracks.Expand(jTracks); // remove 'empty slots' due to unwritten tracks\r
1123   \r
1124     // Access to the AOD container of PMD clusters\r
1125     TClonesArray &pmdClusters = *(AODEvent()->GetPmdClusters());\r
1126     Int_t jPmdClusters=0;\r
1127   \r
1128     for (Int_t iPmd = 0; iPmd < nPmdClus; ++iPmd) {\r
1129       // file pmd clusters, to be revised!\r
1130       AliESDPmdTrack *pmdTrack = esd->GetPmdTrack(iPmd);\r
1131       Int_t nLabel = 0;\r
1132       Int_t *label = 0x0;\r
1133       Double_t posPmd[3] = { pmdTrack->GetClusterX(), pmdTrack->GetClusterY(), pmdTrack->GetClusterZ()};\r
1134       Double_t pidPmd[13] = { 0.}; // to be revised!\r
1135       // type not set!\r
1136       // assoc cluster not set\r
1137       new(pmdClusters[jPmdClusters++]) AliAODPmdCluster(iPmd, nLabel, label, pmdTrack->GetClusterADC(), posPmd, pidPmd);\r
1138     }\r
1139 \r
1140     // Access to the AOD container of clusters\r
1141     TClonesArray &caloClusters = *(AODEvent()->GetCaloClusters());\r
1142     Int_t jClusters=0;\r
1143  \r
1144     for (Int_t iClust=0; iClust<nCaloClus; ++iClust) {\r
1145 \r
1146       AliESDCaloCluster * cluster = esd->GetCaloCluster(iClust);\r
1147 \r
1148       Int_t  id        = cluster->GetID();\r
1149       Int_t  nLabel    = cluster->GetNLabels();\r
1150       Int_t *labels    = cluster->GetLabels();\r
1151       if(labels){ \r
1152                   for(int i = 0;i < nLabel;++i){\r
1153                           if(mcH)mcH->SelectParticle(labels[i]);\r
1154                   }\r
1155           }             \r
1156 \r
1157       Float_t energy = cluster->E();\r
1158       cluster->GetPosition(posF);\r
1159 \r
1160       AliAODCaloCluster *caloCluster = new(caloClusters[jClusters++]) AliAODCaloCluster(id,\r
1161                                                                                         nLabel,\r
1162                                                                                         labels,\r
1163                                                                                         energy,\r
1164                                                                                         posF,\r
1165                                                                                         NULL,\r
1166                                                                                         cluster->GetType(),0);\r
1167       \r
1168       caloCluster->SetCaloCluster(cluster->GetDistanceToBadChannel(),\r
1169                                   cluster->GetDispersion(),\r
1170                                   cluster->GetM20(), cluster->GetM02(),\r
1171                                   cluster->GetEmcCpvDistance(),  \r
1172                                   cluster->GetNExMax(),cluster->GetTOF()) ;\r
1173 \r
1174       caloCluster->SetPIDFromESD(cluster->GetPID());\r
1175       caloCluster->SetNCells(cluster->GetNCells());\r
1176       caloCluster->SetCellsAbsId(cluster->GetCellsAbsId());\r
1177       caloCluster->SetCellsAmplitudeFraction(cluster->GetCellsAmplitudeFraction());\r
1178 \r
1179       TArrayI* matchedT =       cluster->GetTracksMatched();\r
1180       if (nTracks>0 && matchedT && cluster->GetTrackMatchedIndex() >= 0) {      \r
1181         for (Int_t im = 0; im < matchedT->GetSize(); im++) {\r
1182             Int_t iESDtrack = matchedT->At(im);;\r
1183             if (aodTrackRefs->At(iESDtrack) != 0) {\r
1184                 caloCluster->AddTrackMatched((AliAODTrack*)aodTrackRefs->At(iESDtrack));\r
1185             }\r
1186         }\r
1187       }\r
1188       \r
1189     } \r
1190     caloClusters.Expand(jClusters); // resize TObjArray to 'remove' slots for pseudo clusters    \r
1191     // end of loop on calo clusters\r
1192 \r
1193     // fill EMCAL cell info\r
1194     if (esd->GetEMCALCells()) { // protection against missing ESD information\r
1195       AliESDCaloCells &esdEMcells = *(esd->GetEMCALCells());\r
1196       Int_t nEMcell = esdEMcells.GetNumberOfCells() ;\r
1197       \r
1198       AliAODCaloCells &aodEMcells = *(AODEvent()->GetEMCALCells());\r
1199       aodEMcells.CreateContainer(nEMcell);\r
1200       aodEMcells.SetType(AliAODCaloCells::kEMCALCell);\r
1201       for (Int_t iCell = 0; iCell < nEMcell; iCell++) {      \r
1202         aodEMcells.SetCell(iCell,esdEMcells.GetCellNumber(iCell),esdEMcells.GetAmplitude(iCell));\r
1203       }\r
1204       aodEMcells.Sort();\r
1205     }\r
1206 \r
1207     // fill PHOS cell info\r
1208     if (esd->GetPHOSCells()) { // protection against missing ESD information\r
1209       AliESDCaloCells &esdPHcells = *(esd->GetPHOSCells());\r
1210       Int_t nPHcell = esdPHcells.GetNumberOfCells() ;\r
1211       \r
1212       AliAODCaloCells &aodPHcells = *(AODEvent()->GetPHOSCells());\r
1213       aodPHcells.CreateContainer(nPHcell);\r
1214       aodPHcells.SetType(AliAODCaloCells::kPHOSCell);\r
1215       for (Int_t iCell = 0; iCell < nPHcell; iCell++) {      \r
1216         aodPHcells.SetCell(iCell,esdPHcells.GetCellNumber(iCell),esdPHcells.GetAmplitude(iCell));\r
1217       }\r
1218       aodPHcells.Sort();\r
1219     }\r
1220 \r
1221     // tracklets    \r
1222     AliAODTracklets &SPDTracklets = *(AODEvent()->GetTracklets());\r
1223     const AliMultiplicity *mult = esd->GetMultiplicity();\r
1224     if (mult) {\r
1225       if (mult->GetNumberOfTracklets()>0) {\r
1226         SPDTracklets.CreateContainer(mult->GetNumberOfTracklets());\r
1227 \r
1228         for (Int_t n=0; n<mult->GetNumberOfTracklets(); n++) {\r
1229           if(mcH){\r
1230             mcH->SelectParticle(mult->GetLabel(n, 0));\r
1231             mcH->SelectParticle(mult->GetLabel(n, 1));\r
1232           }\r
1233           SPDTracklets.SetTracklet(n, mult->GetTheta(n), mult->GetPhi(n), mult->GetDeltaPhi(n), mult->GetLabel(n, 0),mult->GetLabel(n, 1));\r
1234         }\r
1235       }\r
1236     } else {\r
1237       //Printf("ERROR: AliMultiplicity could not be retrieved from ESD");\r
1238     }\r
1239 \r
1240     delete [] usedKink;\r
1241     delete [] usedV0;\r
1242     delete [] usedTrack;    \r
1243     delete    aodV0Refs;\r
1244     delete    aodV0VtxRefs;\r
1245     delete    aodTrackRefs;\r
1246 \r
1247     return;\r
1248 }\r
1249 \r
1250 \r
1251 void AliAnalysisTaskESDfilter::SetAODPID(AliESDtrack *esdtrack, AliAODTrack *aodtrack, AliAODPid *detpid, Double_t timezero, Double_t bfield)\r
1252 {\r
1253   //\r
1254   // Setter for the raw PID detector signals\r
1255   //\r
1256 \r
1257   // Save PID object for candidate electrons\r
1258     Bool_t pidSave = kFALSE;\r
1259     if (fTrackFilter) {\r
1260         Bool_t selectInfo = fTrackFilter->IsSelected((char*) "Electrons");\r
1261         if (selectInfo)  pidSave = kTRUE;\r
1262     }\r
1263 \r
1264 \r
1265     // Tracks passing pt cut \r
1266     if(esdtrack->Pt()>fHighPthreshold) {\r
1267         pidSave = kTRUE;\r
1268     } else {\r
1269         if(fPtshape){\r
1270             if(esdtrack->Pt()> fPtshape->GetXmin()){\r
1271                 Double_t y = fPtshape->Eval(esdtrack->Pt())/fPtshape->Eval(fHighPthreshold);\r
1272                 if(gRandom->Rndm(0)<1./y){\r
1273                     pidSave = kTRUE;\r
1274                 }//end rndm\r
1275             }//end if p < pmin\r
1276         }//end if p function\r
1277     }// end else\r
1278 \r
1279     if (pidSave) {\r
1280       if(!aodtrack->GetDetPid()){// prevent memory leak when calling SetAODPID twice for the same track\r
1281         detpid = new AliAODPid();\r
1282         SetDetectorRawSignals(detpid,esdtrack,timezero, bfield);\r
1283         aodtrack->SetDetPID(detpid);\r
1284       }\r
1285     }\r
1286 }\r
1287 \r
1288 void AliAnalysisTaskESDfilter::SetDetectorRawSignals(AliAODPid *aodpid, AliESDtrack *track, Double_t timezero, Double_t bfield)\r
1289 {\r
1290 //\r
1291 //assignment of the detector signals (AliXXXesdPID inspired)\r
1292 //\r
1293  if(!track){\r
1294  AliInfo("no ESD track found. .....exiting");\r
1295  return;\r
1296  }\r
1297  // TPC momentum\r
1298  const AliExternalTrackParam *in=track->GetInnerParam();\r
1299  if (in) {\r
1300    aodpid->SetTPCmomentum(in->GetP());\r
1301  }else{\r
1302    aodpid->SetTPCmomentum(-1.);\r
1303  }\r
1304 \r
1305 \r
1306  aodpid->SetITSsignal(track->GetITSsignal());\r
1307  aodpid->SetTPCsignal(track->GetTPCsignal());\r
1308 \r
1309  //n TRD planes = 6\r
1310  Int_t nslices = track->GetNumberOfTRDslices()*6;\r
1311  Double_t *trdslices = new Double_t[nslices];\r
1312  for(Int_t iSl =0; iSl < track->GetNumberOfTRDslices(); iSl++) {\r
1313    for(Int_t iPl =0; iPl<6; iPl++) trdslices[iPl*track->GetNumberOfTRDslices()+iSl] = track->GetTRDslice(iPl,iSl);\r
1314  }\r
1315  \r
1316 //TRD momentum\r
1317  for(Int_t iPl=0;iPl<6;iPl++){\r
1318    Double_t trdmom=track->GetTRDmomentum(iPl);\r
1319    aodpid->SetTRDmomentum(iPl,trdmom);\r
1320  }\r
1321 \r
1322  aodpid->SetTRDsignal(track->GetNumberOfTRDslices()*6,trdslices);\r
1323  Double_t times[AliAODPid::kSPECIES]; track->GetIntegratedTimes(times);\r
1324  aodpid->SetIntegratedTimes(times);\r
1325 \r
1326  aodpid->SetTOFsignal(track->GetTOFsignal()-timezero); // to be fixed\r
1327  aodpid->SetHMPIDsignal(track->GetHMPIDsignal());\r
1328 \r
1329  //Extrapolate track to EMCAL surface for AOD-level track-cluster matching\r
1330  Double_t emcpos[3] = {0.,0.,0.};\r
1331  Double_t emcmom[3] = {0.,0.,0.};\r
1332  aodpid->SetEMCALPosition(emcpos);\r
1333  aodpid->SetEMCALMomentum(emcmom);\r
1334 \r
1335  AliExternalTrackParam *outerparam = (AliExternalTrackParam*)track->GetOuterParam();\r
1336  if(!outerparam) return;\r
1337 \r
1338  //To be replaced by call to AliEMCALGeoUtils when the class becomes available\r
1339  Double_t radius = 441.0; //[cm] EMCAL radius +13cm\r
1340 \r
1341  Bool_t okpos = outerparam->GetXYZAt(radius,bfield,emcpos);\r
1342  Bool_t okmom = outerparam->GetPxPyPzAt(radius,bfield,emcmom);\r
1343  if(!(okpos && okmom)) return;\r
1344 \r
1345  aodpid->SetEMCALPosition(emcpos);\r
1346  aodpid->SetEMCALMomentum(emcmom);\r
1347 \r
1348 }\r
1349 \r
1350 Double_t  AliAnalysisTaskESDfilter::Chi2perNDF(AliESDtrack* track)\r
1351 {\r
1352     // Calculate chi2 per ndf for track\r
1353     Int_t  nClustersTPC = track->GetTPCNcls();\r
1354 \r
1355     if ( nClustersTPC > 5) {\r
1356        return (track->GetTPCchi2()/Float_t(nClustersTPC - 5));\r
1357     } else {\r
1358        return (-1.);\r
1359     }\r
1360  }\r
1361 \r
1362 \r
1363 \r
1364 void AliAnalysisTaskESDfilter::Terminate(Option_t */*option*/)\r
1365 {\r
1366 // Terminate analysis\r
1367 //\r
1368     if (fDebug > 1) printf("AnalysisESDfilter: Terminate() \n");\r
1369 }\r
1370 \r
1371 void  AliAnalysisTaskESDfilter::PrintMCInfo(AliStack *pStack,Int_t label){\r
1372   if(!pStack)return;\r
1373   label = TMath::Abs(label);\r
1374   TParticle *part = pStack->Particle(label);\r
1375   Printf("########################");\r
1376   Printf("%s:%d %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,label,part->GetUniqueID(),part->GetPdgCode(),part->P());\r
1377   part->Print();\r
1378   TParticle* mother = part;\r
1379   Int_t imo = part->GetFirstMother();\r
1380   Int_t nprim = pStack->GetNprimary();\r
1381   //  while((imo >= nprim) && (mother->GetUniqueID() == 4)) {\r
1382   while((imo >= nprim)) {\r
1383     mother =  pStack->Particle(imo);\r
1384     Printf("Mother %s:%d Label %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,imo,mother->GetUniqueID(),mother->GetPdgCode(),mother->P());\r
1385     mother->Print();\r
1386     imo =  mother->GetFirstMother();\r
1387   }\r
1388   Printf("########################");\r
1389 }\r