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Beam type (pp or PbPb) is taken from ESD for the initialization of the physics selection
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1 /**************************************************************************\r
2  * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *\r
3  *                                                                        *\r
4  * Author: The ALICE Off-line Project.                                    *\r
5  * Contributors are mentioned in the code where appropriate.              *\r
6  *                                                                        *\r
7  * Permission to use, copy, modify and distribute this software and its   *\r
8  * documentation strictly for non-commercial purposes is hereby granted   *\r
9  * without fee, provided that the above copyright notice appears in all   *\r
10  * copies and that both the copyright notice and this permission notice   *\r
11  * appear in the supporting documentation. The authors make no claims     *\r
12  * about the suitability of this software for any purpose. It is          *\r
13  * provided "as is" without express or implied warranty.                  *\r
14  **************************************************************************/\r
15 \r
16 /* $Id: AliAnalysisTaskESDfilter.cxx 24535 2008-03-16 22:43:30Z fca $ */\r
17  \r
18 #include <TChain.h>\r
19 #include <TTree.h>\r
20 #include <TList.h>\r
21 #include <TArrayI.h>\r
22 #include <TRandom.h>\r
23 #include <TParticle.h>\r
24 #include <TFile.h>\r
25 \r
26 #include "AliAnalysisTaskESDfilter.h"\r
27 #include "AliAnalysisManager.h"\r
28 #include "AliESDEvent.h"\r
29 #include "AliESDRun.h"\r
30 #include "AliStack.h"\r
31 #include "AliAODEvent.h"\r
32 #include "AliMCEvent.h"\r
33 #include "AliMCEventHandler.h"\r
34 #include "AliESDInputHandler.h"\r
35 #include "AliAODHandler.h"\r
36 #include "AliAODMCParticle.h"\r
37 #include "AliAnalysisFilter.h"\r
38 #include "AliESDMuonTrack.h"\r
39 #include "AliESDVertex.h"\r
40 #include "AliESDv0.h"\r
41 #include "AliESDkink.h"\r
42 #include "AliESDcascade.h"\r
43 #include "AliESDPmdTrack.h"\r
44 #include "AliESDCaloCluster.h"\r
45 #include "AliESDCaloCells.h"\r
46 #include "AliMultiplicity.h"\r
47 #include "AliLog.h"\r
48 \r
49 ClassImp(AliAnalysisTaskESDfilter)\r
50 \r
51 ////////////////////////////////////////////////////////////////////////\r
52 \r
53 AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter():\r
54     AliAnalysisTaskSE(),\r
55     fTrackFilter(0x0),\r
56     fKinkFilter(0x0),\r
57     fV0Filter(0x0),\r
58     fCascadeFilter(0x0),\r
59     fHighPthreshold(0),\r
60     fPtshape(0x0),\r
61     fEnableFillAOD(kTRUE)\r
62 {\r
63   // Default constructor\r
64 }\r
65 \r
66 AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter(const char* name):\r
67     AliAnalysisTaskSE(name),\r
68     fTrackFilter(0x0),\r
69     fKinkFilter(0x0),\r
70     fV0Filter(0x0),\r
71     fCascadeFilter(0x0),\r
72     fHighPthreshold(0),\r
73     fPtshape(0x0),\r
74     fEnableFillAOD(kTRUE)\r
75 {\r
76   // Constructor\r
77 }\r
78 \r
79 void AliAnalysisTaskESDfilter::UserCreateOutputObjects()\r
80 {\r
81   //\r
82   // Create Output Objects conenct filter to outputtree\r
83   // \r
84   if(OutputTree()){\r
85     OutputTree()->GetUserInfo()->Add(fTrackFilter);\r
86   }\r
87   else{\r
88     AliError("No OutputTree() for adding the track filter");\r
89   }\r
90 }\r
91 \r
92 void AliAnalysisTaskESDfilter::Init()\r
93 {\r
94     // Initialization\r
95     if (fDebug > 1) AliInfo("Init() \n");\r
96     // Call configuration file\r
97 }\r
98 \r
99 \r
100 void AliAnalysisTaskESDfilter::UserExec(Option_t */*option*/)\r
101 {\r
102 // Execute analysis for current event\r
103 //\r
104                                             \r
105   Long64_t ientry = Entry();\r
106   \r
107   if (fDebug > 0) {\r
108       printf("Filter: Analysing event # %5d\n", (Int_t) ientry);\r
109       if (fHighPthreshold == 0) AliInfo("detector PID signals are stored in each track");\r
110       if (!fPtshape) AliInfo("detector PID signals are not stored below the pt threshold");\r
111   }\r
112   // Filters must explicitely enable AOD filling in their UserExec (AG)\r
113   if (!AliAnalysisManager::GetAnalysisManager()->GetOutputEventHandler()) AliFatal("Cannot run ESD filter without an output event handler");\r
114   if(fEnableFillAOD) AliAnalysisManager::GetAnalysisManager()->GetOutputEventHandler()->SetFillAOD(kTRUE);\r
115 \r
116   ConvertESDtoAOD();\r
117 }\r
118 \r
119 void AliAnalysisTaskESDfilter::ConvertESDtoAOD() {\r
120     // ESD Filter analysis task executed for each event\r
121 \r
122     AliESDEvent* esd = dynamic_cast<AliESDEvent*>(InputEvent());\r
123     if(!esd)return;\r
124     AliESD*      old = esd->GetAliESDOld();\r
125 \r
126     // Fetch Stack for debuggging if available \r
127     AliMCEventHandler *mcH = 0;\r
128     if(MCEvent()){\r
129       mcH = (AliMCEventHandler*) ((AliAnalysisManager::GetAnalysisManager())->GetMCtruthEventHandler()); \r
130     }\r
131     // set arrays and pointers\r
132     Float_t posF[3];\r
133     Double_t pos[3];\r
134     Double_t p[3];\r
135     Double_t momPos[3]; \r
136     Double_t momNeg[3];\r
137     Double_t momBach[3];\r
138     Double_t momPosAtV0vtx[3];\r
139     Double_t momNegAtV0vtx[3];\r
140     Double_t momBachAtCascadeVtx[3];\r
141     Double_t covVtx[6];\r
142     Double_t covTr[21];\r
143     Double_t pid[10];\r
144 \r
145     for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;\r
146     for (Int_t i = 0; i < 21; i++) covTr [i] = 0.;\r
147 \r
148     \r
149     // loop over events and fill them\r
150     // Multiplicity information needed by the header (to be revised!)\r
151     Int_t nTracks    = esd->GetNumberOfTracks();\r
152     for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) esd->GetTrack(iTrack)->SetESDEvent(esd);\r
153 \r
154     //    if (fDebug > 0) printf("-------------------Bo: Number of ESD tracks %d \n",nTracks);\r
155 \r
156     Int_t nPosTracks = 0;\r
157     \r
158     // Update the header\r
159 \r
160     AliAODHeader* header = AODEvent()->GetHeader();\r
161     \r
162     header->SetRunNumber(esd->GetRunNumber());\r
163     header->SetOfflineTrigger(fInputHandler->IsEventSelected()); // propagate the decision of the physics selection\r
164     TTree* tree = fInputHandler->GetTree();\r
165     if (tree) {\r
166         TFile* file = tree->GetCurrentFile();\r
167         if (file) header->SetESDFileName(file->GetName());\r
168     }\r
169     \r
170     if (old) {\r
171         header->SetBunchCrossNumber(0);\r
172         header->SetOrbitNumber(0);\r
173         header->SetPeriodNumber(0);\r
174         header->SetEventType(0);\r
175         header->SetMuonMagFieldScale(-999.);\r
176         header->SetCentrality(-999.);       \r
177     } else {\r
178         header->SetBunchCrossNumber(esd->GetBunchCrossNumber());\r
179         header->SetOrbitNumber(esd->GetOrbitNumber());\r
180         header->SetPeriodNumber(esd->GetPeriodNumber());\r
181         header->SetEventType(esd->GetEventType());\r
182         header->SetCentrality(-999.);\r
183         header->SetEventNumberESDFile(esd->GetHeader()->GetEventNumberInFile());\r
184     }\r
185     // Trigger\r
186     header->SetFiredTriggerClasses(esd->GetFiredTriggerClasses());\r
187     header->SetTriggerMask(esd->GetTriggerMask()); \r
188     header->SetTriggerCluster(esd->GetTriggerCluster());\r
189     header->SetL0TriggerInputs(esd->GetHeader()->GetL0TriggerInputs());    \r
190     header->SetL1TriggerInputs(esd->GetHeader()->GetL1TriggerInputs());    \r
191     header->SetL2TriggerInputs(esd->GetHeader()->GetL2TriggerInputs());    \r
192 \r
193     header->SetMagneticField(esd->GetMagneticField());\r
194     header->SetMuonMagFieldScale(esd->GetCurrentDip()/6000.);\r
195     header->SetZDCN1Energy(esd->GetZDCN1Energy());\r
196     header->SetZDCP1Energy(esd->GetZDCP1Energy());\r
197     header->SetZDCN2Energy(esd->GetZDCN2Energy());\r
198     header->SetZDCP2Energy(esd->GetZDCP2Energy());\r
199     header->SetZDCEMEnergy(esd->GetZDCEMEnergy(0),esd->GetZDCEMEnergy(1));\r
200 \r
201     \r
202     Float_t diamxy[2]={esd->GetDiamondX(),esd->GetDiamondY()};\r
203     Float_t diamcov[3]; esd->GetDiamondCovXY(diamcov);\r
204     header->SetDiamond(diamxy,diamcov);\r
205     header->SetDiamondZ(esd->GetDiamondZ(),esd->GetSigma2DiamondZ());\r
206 //\r
207 //\r
208     Int_t nV0s      = esd->GetNumberOfV0s();\r
209     Int_t nCascades = esd->GetNumberOfCascades();\r
210     Int_t nKinks    = esd->GetNumberOfKinks();\r
211     Int_t nVertices = nV0s + nCascades /*V0 wihtin cascade already counted*/+ nKinks + 1 /* = prim. vtx*/;\r
212     Int_t nPileSPDVertices=1+esd->GetNumberOfPileupVerticesSPD(); // also SPD main vertex\r
213     Int_t nPileTrkVertices=esd->GetNumberOfPileupVerticesTracks();\r
214     nVertices+=nPileSPDVertices;\r
215     nVertices+=nPileTrkVertices;\r
216     Int_t nJets     = 0;\r
217     Int_t nCaloClus = esd->GetNumberOfCaloClusters();\r
218     Int_t nFmdClus  = 0;\r
219     Int_t nPmdClus  = esd->GetNumberOfPmdTracks();\r
220     \r
221     if (fDebug > 0) \r
222         printf("   NV0=%d  NCASCADES=%d  NKINKS=%d\n", nV0s, nCascades, nKinks);\r
223        \r
224     AODEvent()->ResetStd(nTracks, nVertices, nV0s, nCascades, nJets, nCaloClus, nFmdClus, nPmdClus);\r
225 \r
226 \r
227     AliAODTrack   *aodTrack       = 0x0;\r
228     AliAODPid     *detpid         = 0x0;\r
229     Double_t      timezero        = 0;   //TO BE FIXED\r
230     AliAODVertex  *vV0FromCascade = 0x0;\r
231     AliAODv0      *aodV0          = 0x0;\r
232     AliAODcascade *aodCascade     = 0x0;\r
233     \r
234     // RefArray to store the mapping between esd track number and newly created AOD-Track\r
235     TRefArray   *aodTrackRefs = NULL;\r
236     if (nTracks > 0) aodTrackRefs = new TRefArray(nTracks);\r
237 \r
238     // RefArray to store a mapping between esd V0 number and newly created AOD-Vertex V0\r
239     TRefArray   *aodV0VtxRefs = NULL;\r
240     if (nV0s > 0) aodV0VtxRefs = new TRefArray(nV0s);\r
241 \r
242     // RefArray to store the mapping between esd V0 number and newly created AOD-V0\r
243     TRefArray   *aodV0Refs = NULL;\r
244     if (nV0s > 0) aodV0Refs = new TRefArray(nV0s);\r
245 \r
246     \r
247 \r
248 \r
249 \r
250     // Array to take into account the tracks already added to the AOD\r
251     Bool_t * usedTrack = NULL;\r
252     if (nTracks>0) {\r
253         usedTrack = new Bool_t[nTracks];\r
254         for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) usedTrack[iTrack]=kFALSE;\r
255     }\r
256     // Array to take into account the V0s already added to the AOD (V0 within cascades)\r
257     Bool_t * usedV0 = NULL;\r
258     if (nV0s>0) {\r
259         usedV0 = new Bool_t[nV0s];\r
260         for (Int_t iV0=0; iV0<nV0s; ++iV0) usedV0[iV0]=kFALSE;\r
261     }\r
262     // Array to take into account the kinks already added to the AOD\r
263     Bool_t * usedKink = NULL;\r
264     if (nKinks>0) {\r
265         usedKink = new Bool_t[nKinks];\r
266         for (Int_t iKink=0; iKink<nKinks; ++iKink) usedKink[iKink]=kFALSE;\r
267     }\r
268     \r
269     // Access to the AOD container of vertices\r
270     TClonesArray &vertices = *(AODEvent()->GetVertices());\r
271     Int_t jVertices=0;\r
272     \r
273     // Access to the AOD container of tracks\r
274     TClonesArray &tracks = *(AODEvent()->GetTracks());\r
275     Int_t jTracks=0; \r
276     \r
277     // Access to the AOD container of Cascades\r
278     TClonesArray &cascades = *(AODEvent()->GetCascades());\r
279     Int_t jCascades=0;\r
280 \r
281     // Access to the AOD container of V0s\r
282     TClonesArray &v0s = *(AODEvent()->GetV0s());\r
283     Int_t jV0s=0;\r
284     \r
285     // Add primary vertex. The primary tracks will be defined\r
286     // after the loops on the composite objects (V0, cascades, kinks)\r
287     const AliESDVertex *vtx = esd->GetPrimaryVertex();\r
288     \r
289     vtx->GetXYZ(pos); // position\r
290     vtx->GetCovMatrix(covVtx); //covariance matrix\r
291     \r
292     AliAODVertex * primary = new(vertices[jVertices++])\r
293         AliAODVertex(pos, covVtx, vtx->GetChi2toNDF(), NULL, -1, AliAODVertex::kPrimary);\r
294     primary->SetName(vtx->GetName());\r
295     primary->SetTitle(vtx->GetTitle());\r
296 \r
297     TString vtitle = vtx->GetTitle();\r
298     if (!vtitle.Contains("VertexerTracks")) \r
299       primary->SetNContributors(vtx->GetNContributors());\r
300 \r
301     if (fDebug > 0) primary->Print();\r
302 \r
303 \r
304     // Add SPD "main" vertex \r
305     const AliESDVertex *vtxS = esd->GetPrimaryVertexSPD();\r
306     vtxS->GetXYZ(pos); // position\r
307     vtxS->GetCovMatrix(covVtx); //covariance matrix\r
308     AliAODVertex * mVSPD = new(vertices[jVertices++])\r
309       AliAODVertex(pos, covVtx, vtxS->GetChi2toNDF(), NULL, -1, AliAODVertex::kMainSPD);\r
310     mVSPD->SetName(vtxS->GetName());\r
311     mVSPD->SetTitle(vtxS->GetTitle());\r
312     mVSPD->SetNContributors(vtxS->GetNContributors()); \r
313 \r
314     // Add SPD pileup vertices\r
315     for(Int_t iV=0; iV<nPileSPDVertices-1; iV++){\r
316       const AliESDVertex *vtxP = esd->GetPileupVertexSPD(iV);\r
317       vtxP->GetXYZ(pos); // position\r
318       vtxP->GetCovMatrix(covVtx); //covariance matrix\r
319       AliAODVertex * pVSPD =  new(vertices[jVertices++])\r
320         AliAODVertex(pos, covVtx, vtxP->GetChi2toNDF(), NULL, -1, AliAODVertex::kPileupSPD);\r
321       pVSPD->SetName(vtxP->GetName());\r
322       pVSPD->SetTitle(vtxP->GetTitle());\r
323       pVSPD->SetNContributors(vtxP->GetNContributors()); \r
324     }\r
325 \r
326     // Add TRK pileup vertices\r
327     for(Int_t iV=0; iV<nPileTrkVertices; iV++){\r
328       const AliESDVertex *vtxP = esd->GetPileupVertexTracks(iV);\r
329       vtxP->GetXYZ(pos); // position\r
330       vtxP->GetCovMatrix(covVtx); //covariance matrix\r
331       AliAODVertex * pVTRK = new(vertices[jVertices++])\r
332         AliAODVertex(pos, covVtx, vtxP->GetChi2toNDF(), NULL, -1, AliAODVertex::kPileupTracks);\r
333       pVTRK->SetName(vtxP->GetName());\r
334       pVTRK->SetTitle(vtxP->GetTitle());\r
335       pVTRK->SetNContributors(vtxP->GetNContributors());\r
336     }\r
337 \r
338     // Create vertices starting from the most complex objects\r
339     Double_t chi2 = 0.;\r
340     \r
341     // Cascades (Modified by A.Maire - February 2009)\r
342     for (Int_t nCascade = 0; nCascade < nCascades; ++nCascade) {\r
343 \r
344         if (fDebug > 1) \r
345         printf("\n ******** Cascade number : %d/%d *********\n", nCascade, nCascades);\r
346 \r
347         // 0- Preparation\r
348         //\r
349         AliESDcascade *esdCascade = esd->GetCascade(nCascade);\r
350                 Int_t  idxPosFromV0Dghter  = esdCascade->GetPindex();\r
351                 Int_t  idxNegFromV0Dghter  = esdCascade->GetNindex();\r
352                 Int_t  idxBachFromCascade  = esdCascade->GetBindex();\r
353         \r
354         AliESDtrack  *esdCascadePos  = esd->GetTrack( idxPosFromV0Dghter);\r
355         AliESDtrack  *esdCascadeNeg  = esd->GetTrack( idxNegFromV0Dghter);\r
356         AliESDtrack  *esdCascadeBach = esd->GetTrack( idxBachFromCascade);\r
357 \r
358         // Identification of the V0 within the esdCascade (via both daughter track indices)\r
359         AliESDv0 * currentV0   = 0x0;\r
360         Int_t      idxV0FromCascade = -1;\r
361         \r
362         for (Int_t iV0=0; iV0<nV0s; ++iV0) {\r
363         \r
364                          currentV0 = esd->GetV0(iV0);\r
365                 Int_t posCurrentV0 = currentV0->GetPindex();\r
366                 Int_t negCurrentV0 = currentV0->GetNindex();\r
367         \r
368                 if (posCurrentV0==idxPosFromV0Dghter && negCurrentV0==idxNegFromV0Dghter) {\r
369                 idxV0FromCascade = iV0;\r
370                 break;\r
371                 }\r
372         }\r
373 \r
374         if(idxV0FromCascade < 0){\r
375                 printf("Cascade - no matching for the V0 (index V0 = -1) ! Skip ... \n");\r
376                 continue;\r
377         }// a priori, useless check, but safer ... in case of pb with tracks "out of bounds"\r
378 \r
379         if (fDebug > 1) \r
380                 printf("Cascade %d - V0fromCascade ind : %d/%d\n", nCascade, idxV0FromCascade, nV0s);\r
381 \r
382         AliESDv0 *esdV0FromCascade   = esd->GetV0(idxV0FromCascade);\r
383         \r
384 \r
385         // 1 - Cascade selection \r
386         \r
387         //      AliESDVertex *esdPrimVtx = new AliESDVertex(*(esd->GetPrimaryVertex()));\r
388         //      TList cascadeObjects;\r
389         //      cascadeObjects.AddAt(esdV0FromCascade, 0);\r
390         //      cascadeObjects.AddAt(esdCascadePos,    1);\r
391         //      cascadeObjects.AddAt(esdCascadeNeg,    2);\r
392         //      cascadeObjects.AddAt(esdCascade,       3);\r
393         //      cascadeObjects.AddAt(esdCascadeBach,   4);\r
394         //      cascadeObjects.AddAt(esdPrimVtx,       5);\r
395         // \r
396         //      UInt_t selectCascade = 0;\r
397         //      if (fCascadeFilter) {\r
398         //        // selectCascade = fCascadeFilter->IsSelected(&cascadeObjects); \r
399         //              // FIXME AliESDCascadeCuts to be implemented ...\r
400         // \r
401         //              // Here we may encounter a moot point at the V0 level \r
402         //              // between the cascade selections and the V0 ones :\r
403         //              // the V0 selected along with the cascade (secondary V0) may \r
404         //              // usually be removed from the dedicated V0 selections (prim V0) ...\r
405         //              // -> To be discussed !\r
406         // \r
407         //        // this is a little awkward but otherwise the \r
408         //        // list wants to access the pointer (delete it) \r
409         //        // again when going out of scope\r
410         //        delete cascadeObjects.RemoveAt(5); // esdPrimVtx created via copy construct\r
411         //        esdPrimVtx = 0;\r
412         //        if (!selectCascade) \r
413         //          continue;\r
414         //      }\r
415         //      else{\r
416         //        delete cascadeObjects.RemoveAt(5); // esdPrimVtx created via copy construct\r
417         //        esdPrimVtx = 0;\r
418         //      }\r
419 \r
420         // 2 - Add the cascade vertex\r
421         \r
422         esdCascade->GetXYZcascade(pos[0], pos[1], pos[2]);\r
423         esdCascade->GetPosCovXi(covVtx);\r
424         chi2 = esdCascade->GetChi2Xi(); \r
425         \r
426         AliAODVertex *vCascade = new(vertices[jVertices++]) AliAODVertex( pos,\r
427                                                                           covVtx,\r
428                                                                           chi2, // FIXME = Chi2/NDF will be needed\r
429                                                                           primary,\r
430                                                                           nCascade, // id\r
431                                                                           AliAODVertex::kCascade);\r
432         primary->AddDaughter(vCascade);\r
433 \r
434         if (fDebug > 2) {\r
435                 printf("---- Cascade / Cascade Vertex (AOD) : \n");\r
436                 vCascade->Print();\r
437         }\r
438 \r
439 \r
440         // 3 - Add the bachelor track from the cascade\r
441         \r
442         if (!usedTrack[idxBachFromCascade]) {\r
443 \r
444         esdCascadeBach->GetPxPyPz(momBach);\r
445         esdCascadeBach->GetXYZ(pos);\r
446         esdCascadeBach->GetCovarianceXYZPxPyPz(covTr);\r
447         esdCascadeBach->GetESDpid(pid);\r
448 \r
449             usedTrack[idxBachFromCascade] = kTRUE;\r
450             UInt_t selectInfo = 0;\r
451             if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadeBach);\r
452             if(mcH)mcH->SelectParticle(esdCascadeBach->GetLabel());\r
453             aodTrack = new(tracks[jTracks++]) AliAODTrack(esdCascadeBach->GetID(),\r
454                                                           esdCascadeBach->GetLabel(), \r
455                                                           momBach, \r
456                                                           kTRUE,\r
457                                                           pos,\r
458                                                           kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
459                                                           covTr, \r
460                                                           (Short_t)esdCascadeBach->GetSign(),\r
461                                                           esdCascadeBach->GetITSClusterMap(), \r
462                                                           pid,\r
463                                                           vCascade,\r
464                                                           kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
465                                                           vtx->UsesTrack(esdCascadeBach->GetID()),\r
466                                                           AliAODTrack::kSecondary,\r
467                                                           selectInfo);\r
468             aodTrack->SetTPCClusterMap(esdCascadeBach->GetTPCClusterMap());\r
469             aodTrack->SetTPCSharedMap (esdCascadeBach->GetTPCSharedMap());\r
470             aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadeBach));\r
471             aodTrackRefs->AddAt(aodTrack,idxBachFromCascade);\r
472             \r
473             if (esdCascadeBach->GetSign() > 0) nPosTracks++;\r
474             aodTrack->ConvertAliPIDtoAODPID();\r
475             aodTrack->SetFlags(esdCascadeBach->GetStatus());\r
476             SetAODPID(esdCascadeBach,aodTrack,detpid,timezero,esd->GetMagneticField());\r
477         }\r
478         else {\r
479             aodTrack = dynamic_cast<AliAODTrack*>( aodTrackRefs->At(idxBachFromCascade) );\r
480         }\r
481 \r
482         vCascade->AddDaughter(aodTrack);\r
483 \r
484         if (fDebug > 4) {\r
485                 printf("---- Cascade / bach dghter : \n");\r
486                 aodTrack->Print();\r
487         }\r
488         \r
489 \r
490         // 4 - Add the V0 from the cascade. \r
491         // = V0vtx + both pos and neg daughter tracks + the aodV0 itself\r
492         //\r
493 \r
494         if ( !usedV0[idxV0FromCascade] ) {\r
495         // 4.A - if VO structure hasn't been created yet\r
496                 \r
497                 // 4.A.1 - Create the V0 vertex of the cascade\r
498         \r
499                 esdV0FromCascade->GetXYZ(pos[0], pos[1], pos[2]);\r
500                 esdV0FromCascade->GetPosCov(covVtx);\r
501                 chi2 = esdV0FromCascade->GetChi2V0();  // = chi2/NDF since NDF = 2*2-3 ?\r
502                         \r
503                 vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,\r
504                                                                         covVtx,\r
505                                                                         chi2,\r
506                                                                         vCascade,\r
507                                                                         idxV0FromCascade, //id of ESDv0\r
508                                                                         AliAODVertex::kV0);\r
509                 // Note:\r
510                 //    one V0 can be used by several cascades.\r
511                 // So, one AOD V0 vtx can have several parent vtx.\r
512                 // This is not directly allowed by AliAODvertex.\r
513                 // Setting the parent vtx (here = param "vCascade") doesn't lead to a crash\r
514                 // but to a problem of consistency within AODEvent.\r
515                 // -> See below paragraph 4.B, for the proposed treatment of such a case.\r
516 \r
517                 // Add the vV0FromCascade to the aodVOVtxRefs\r
518                 aodV0VtxRefs->AddAt(vV0FromCascade,idxV0FromCascade);\r
519                 \r
520                 \r
521                 // 4.A.2 - Add the positive tracks from the V0\r
522                 \r
523                 esdCascadePos->GetPxPyPz(momPos);\r
524                 esdCascadePos->GetXYZ(pos);\r
525                 esdCascadePos->GetCovarianceXYZPxPyPz(covTr);\r
526                 esdCascadePos->GetESDpid(pid);\r
527                 \r
528         \r
529                 if (!usedTrack[idxPosFromV0Dghter]) {\r
530                 usedTrack[idxPosFromV0Dghter] = kTRUE;\r
531         \r
532                 UInt_t selectInfo = 0;\r
533                 if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadePos);\r
534                 if(mcH) mcH->SelectParticle(esdCascadePos->GetLabel());\r
535                 aodTrack = new(tracks[jTracks++]) AliAODTrack(  esdCascadePos->GetID(),\r
536                                                                 esdCascadePos->GetLabel(), \r
537                                                                 momPos, \r
538                                                                 kTRUE,\r
539                                                                 pos,\r
540                                                                 kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
541                                                                 covTr, \r
542                                                                 (Short_t)esdCascadePos->GetSign(),\r
543                                                                 esdCascadePos->GetITSClusterMap(), \r
544                                                                 pid,\r
545                                                                 vV0FromCascade,\r
546                                                                 kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
547                                                                 vtx->UsesTrack(esdCascadePos->GetID()),\r
548                                                                 AliAODTrack::kSecondary,\r
549                                                                 selectInfo);\r
550                 aodTrack->SetTPCClusterMap(esdCascadePos->GetTPCClusterMap());\r
551                 aodTrack->SetTPCSharedMap (esdCascadePos->GetTPCSharedMap());\r
552                 aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadePos));\r
553                 aodTrackRefs->AddAt(aodTrack,idxPosFromV0Dghter);\r
554 \r
555                 if (esdCascadePos->GetSign() > 0) nPosTracks++;\r
556                 aodTrack->ConvertAliPIDtoAODPID();\r
557                 aodTrack->SetFlags(esdCascadePos->GetStatus());\r
558                 SetAODPID(esdCascadePos,aodTrack,detpid,timezero,esd->GetMagneticField());\r
559                 }\r
560                 else {\r
561                         aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(idxPosFromV0Dghter));\r
562                 }\r
563                 vV0FromCascade->AddDaughter(aodTrack);\r
564         \r
565         \r
566                 // 4.A.3 - Add the negative tracks from the V0\r
567                 \r
568                 esdCascadeNeg->GetPxPyPz(momNeg);\r
569                 esdCascadeNeg->GetXYZ(pos);\r
570                 esdCascadeNeg->GetCovarianceXYZPxPyPz(covTr);\r
571                 esdCascadeNeg->GetESDpid(pid);\r
572                 \r
573                 \r
574                 if (!usedTrack[idxNegFromV0Dghter]) {\r
575                 usedTrack[idxNegFromV0Dghter] = kTRUE;\r
576         \r
577                 UInt_t selectInfo = 0;\r
578                 if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadeNeg);\r
579                 if(mcH)mcH->SelectParticle(esdCascadeNeg->GetLabel());\r
580                 aodTrack = new(tracks[jTracks++]) AliAODTrack(  esdCascadeNeg->GetID(),\r
581                                                                 esdCascadeNeg->GetLabel(),\r
582                                                                 momNeg,\r
583                                                                 kTRUE,\r
584                                                                 pos,\r
585                                                                 kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
586                                                                 covTr, \r
587                                                                 (Short_t)esdCascadeNeg->GetSign(),\r
588                                                                 esdCascadeNeg->GetITSClusterMap(), \r
589                                                                 pid,\r
590                                                                 vV0FromCascade,\r
591                                                                 kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
592                                                                 vtx->UsesTrack(esdCascadeNeg->GetID()),\r
593                                                                 AliAODTrack::kSecondary,\r
594                                                                 selectInfo);\r
595                 aodTrack->SetTPCClusterMap(esdCascadeNeg->GetTPCClusterMap());\r
596                 aodTrack->SetTPCSharedMap (esdCascadeNeg->GetTPCSharedMap());\r
597                 aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadeNeg));\r
598                 aodTrackRefs->AddAt(aodTrack,idxNegFromV0Dghter);\r
599                 \r
600                 if (esdCascadeNeg->GetSign() > 0) nPosTracks++;\r
601                 aodTrack->ConvertAliPIDtoAODPID();\r
602                 aodTrack->SetFlags(esdCascadeNeg->GetStatus());\r
603                 SetAODPID(esdCascadeNeg,aodTrack,detpid,timezero,esd->GetMagneticField());\r
604                 }\r
605                 else {\r
606                         aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(idxNegFromV0Dghter));\r
607                 }\r
608         \r
609                 vV0FromCascade->AddDaughter(aodTrack);\r
610         \r
611                         \r
612                 // 4.A.4 - Add the V0 from cascade to the V0 array\r
613 \r
614                 Double_t  dcaV0Daughters      = esdV0FromCascade->GetDcaV0Daughters();\r
615                 Double_t  dcaV0ToPrimVertex   = esdV0FromCascade->GetD( esd->GetPrimaryVertex()->GetX(),\r
616                                                                         esd->GetPrimaryVertex()->GetY(),\r
617                                                                         esd->GetPrimaryVertex()->GetZ() );\r
618                 esdV0FromCascade->GetPPxPyPz( momPosAtV0vtx[0],momPosAtV0vtx[1],momPosAtV0vtx[2] ); \r
619                 esdV0FromCascade->GetNPxPyPz( momNegAtV0vtx[0],momNegAtV0vtx[1],momNegAtV0vtx[2] ); \r
620         \r
621                 Double_t dcaDaughterToPrimVertex[2] = { 999., 999.}; // ..[0] = DCA in (x,y) for Pos and ..[1] = Neg\r
622                 dcaDaughterToPrimVertex[0] = TMath::Abs(esdCascadePos->GetD(    esd->GetPrimaryVertex()->GetX(),\r
623                                                                                 esd->GetPrimaryVertex()->GetY(),\r
624                                                                                 esd->GetMagneticField())        );\r
625                 dcaDaughterToPrimVertex[1] = TMath::Abs(esdCascadeNeg->GetD(    esd->GetPrimaryVertex()->GetX(),\r
626                                                                                 esd->GetPrimaryVertex()->GetY(),\r
627                                                                                 esd->GetMagneticField())        );\r
628                 \r
629                 aodV0 = new(v0s[jV0s++]) AliAODv0( vV0FromCascade, \r
630                                                    dcaV0Daughters,\r
631                                                    dcaV0ToPrimVertex, \r
632                                                    momPosAtV0vtx, \r
633                                                    momNegAtV0vtx, \r
634                                                    dcaDaughterToPrimVertex); \r
635                 // set the aod v0 on-the-fly status\r
636                 aodV0->SetOnFlyStatus(esdV0FromCascade->GetOnFlyStatus());\r
637 \r
638                 // Add the aodV0 to the aodVORefs\r
639                 aodV0Refs->AddAt(aodV0,idxV0FromCascade);\r
640                 \r
641         usedV0[idxV0FromCascade] = kTRUE;\r
642 \r
643         } else { \r
644         // 4.B - if V0 structure already used\r
645 \r
646                 // Note :\r
647                 //    one V0 can be used by several cascades (frequent in PbPb evts) : \r
648                 // same V0 which used but attached to different bachelor tracks\r
649                 // -> aodVORefs and aodV0VtxRefs are needed.\r
650                 // Goal : avoid a redundancy of the info in "Vertices" and "v0s" clones array.\r
651         \r
652                 vV0FromCascade = dynamic_cast<AliAODVertex*>( aodV0VtxRefs->At(idxV0FromCascade) );\r
653                 aodV0          = dynamic_cast<AliAODv0*>    ( aodV0Refs   ->At(idxV0FromCascade) );\r
654                  \r
655                 // - Treatment of the parent for such a "re-used" V0 :\r
656                 // Insert the cascade that reuses the V0 vertex in the lineage chain\r
657                 // Before : vV0 -> vCascade1 -> vPrimary\r
658                 //  - Hyp : cascade2 uses the same V0 as cascade1\r
659                 //  After :  vV0 -> vCascade2 -> vCascade1 -> vPrimary\r
660                 \r
661                 AliAODVertex *vCascadePreviousParent = dynamic_cast<AliAODVertex*> (vV0FromCascade->GetParent());\r
662                         vV0FromCascade->SetParent(vCascade);\r
663                         vCascade      ->SetParent(vCascadePreviousParent);\r
664 \r
665                 if(fDebug > 2)  \r
666                         printf("---- Cascade / Lineage insertion\n"\r
667                                 "Parent of V0 vtx                 = Cascade vtx %p\n"\r
668                                 "Parent of the cascade vtx        = Cascade vtx %p\n"\r
669                                 "Parent of the parent cascade vtx = Cascade vtx %p\n", \r
670                                                 static_cast<void*> (vV0FromCascade->GetParent()),\r
671                                                 static_cast<void*> (vCascade->GetParent()),\r
672                                                 static_cast<void*> (vCascadePreviousParent->GetParent()) );\r
673                 \r
674         }// end if V0 structure already used\r
675 \r
676         if (fDebug > 2) {\r
677                 printf("---- Cascade / V0 vertex: \n");\r
678                 vV0FromCascade->Print();\r
679         }\r
680 \r
681         if (fDebug > 4) {\r
682                 printf("---- Cascade / pos dghter : \n");\r
683                         aodTrack->Print();\r
684                 printf("---- Cascade / neg dghter : \n");\r
685                         aodTrack->Print();\r
686                 printf("---- Cascade / aodV0 : \n");\r
687                         aodV0->Print();\r
688         }\r
689 \r
690         // In any case (used V0 or not), add the V0 vertex to the cascade one.\r
691         vCascade->AddDaughter(vV0FromCascade);  \r
692         \r
693                 \r
694         // 5 - Add the primary track of the cascade (if any)\r
695 \r
696 \r
697         // 6 - Add the cascade to the AOD array of cascades\r
698 \r
699         Double_t dcaBachToPrimVertexXY = TMath::Abs(esdCascadeBach->GetD(esd->GetPrimaryVertex()->GetX(),\r
700                                                                          esd->GetPrimaryVertex()->GetY(),\r
701                                                                          esd->GetMagneticField())        );\r
702 \r
703         esdCascade->GetBPxPyPz(momBachAtCascadeVtx[0], momBachAtCascadeVtx[1], momBachAtCascadeVtx[2]);\r
704 \r
705         aodCascade = new(cascades[jCascades++]) AliAODcascade(  vCascade,\r
706                                                                 esdCascade->Charge(),\r
707                                                                 esdCascade->GetDcaXiDaughters(),\r
708                                                                 -999.,\r
709                 // DCAXiToPrimVtx -> needs to be calculated   ----|\r
710                 // doesn't exist at ESD level;\r
711                 // See AODcascade::DcaXiToPrimVertex(Double, Double, Double)\r
712                                                                 dcaBachToPrimVertexXY,\r
713                                                                 momBachAtCascadeVtx,\r
714                                                                 *aodV0);\r
715         \r
716         if (fDebug > 3) {\r
717                 printf("---- Cascade / AOD cascade : \n\n");\r
718                 aodCascade->PrintXi(primary->GetX(), primary->GetY(), primary->GetZ());\r
719         }\r
720 \r
721     } // end of the loop on cascades\r
722 \r
723     cascades.Expand(jCascades);\r
724 \r
725 \r
726     //\r
727     // V0s\r
728     //\r
729     \r
730     for (Int_t nV0 = 0; nV0 < nV0s; ++nV0) {\r
731         \r
732         if (usedV0[nV0]) continue; // skip if already added to the AOD\r
733         \r
734         AliESDv0 *v0 = esd->GetV0(nV0);\r
735         Int_t posFromV0 = v0->GetPindex();\r
736         Int_t negFromV0 = v0->GetNindex();\r
737         \r
738         // V0 selection \r
739         //\r
740         AliESDVertex *esdVtx   = new AliESDVertex(*(esd->GetPrimaryVertex()));\r
741         AliESDtrack  *esdV0Pos = esd->GetTrack(posFromV0);\r
742         AliESDtrack  *esdV0Neg = esd->GetTrack(negFromV0);\r
743         TList v0objects;\r
744         v0objects.AddAt(v0,                      0);\r
745         v0objects.AddAt(esdV0Pos,                1);\r
746         v0objects.AddAt(esdV0Neg,                2);\r
747         v0objects.AddAt(esdVtx,                  3);\r
748         UInt_t selectV0 = 0;\r
749         if (fV0Filter) {\r
750           selectV0 = fV0Filter->IsSelected(&v0objects);\r
751           // this is a little awkward but otherwise the \r
752           // list wants to access the pointer (delete it) \r
753           // again when going out of scope\r
754           delete v0objects.RemoveAt(3); // esdVtx created via copy construct\r
755           esdVtx = 0;\r
756           if (!selectV0) \r
757             continue;\r
758         }\r
759         else{\r
760           delete v0objects.RemoveAt(3); // esdVtx created via copy construct\r
761           esdVtx = 0;\r
762         }\r
763     \r
764         v0->GetXYZ(pos[0], pos[1], pos[2]);\r
765 \r
766         if (!old) {\r
767             chi2 = v0->GetChi2V0(); // = chi2/NDF since NDF = 2*2-3\r
768             v0->GetPosCov(covVtx);\r
769         } else {\r
770             chi2 = -999.;\r
771             for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;\r
772         }\r
773 \r
774 \r
775         AliAODVertex * vV0 = \r
776           new(vertices[jVertices++]) AliAODVertex(pos,\r
777                                                   covVtx,\r
778                                                   chi2,\r
779                                                   primary,\r
780                                                   nV0,\r
781                                                   AliAODVertex::kV0);\r
782         primary->AddDaughter(vV0);\r
783         \r
784 \r
785         // Add the positive tracks from the V0\r
786         \r
787         esdV0Pos->GetPxPyPz(momPos);\r
788         esdV0Pos->GetXYZ(pos);\r
789         esdV0Pos->GetCovarianceXYZPxPyPz(covTr);\r
790         esdV0Pos->GetESDpid(pid);\r
791         \r
792         if (!usedTrack[posFromV0]) {\r
793             usedTrack[posFromV0] = kTRUE;\r
794             UInt_t selectInfo = 0;\r
795             if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Pos);\r
796             if(mcH)mcH->SelectParticle(esdV0Pos->GetLabel());\r
797             aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Pos->GetID(),\r
798                                                           esdV0Pos->GetLabel(), \r
799                                                           momPos, \r
800                                                           kTRUE,\r
801                                                           pos,\r
802                                                           kFALSE,\r
803                                                           covTr, \r
804                                                           (Short_t)esdV0Pos->GetSign(),\r
805                                                           esdV0Pos->GetITSClusterMap(), \r
806                                                           pid,\r
807                                                           vV0,\r
808                                                           kTRUE,  // check if this is right\r
809                                                           vtx->UsesTrack(esdV0Pos->GetID()),\r
810                                                           AliAODTrack::kSecondary,\r
811                                                           selectInfo);\r
812             aodTrack->SetTPCClusterMap(esdV0Pos->GetTPCClusterMap());\r
813             aodTrack->SetTPCSharedMap (esdV0Pos->GetTPCSharedMap());\r
814             aodTrack->SetChi2perNDF(Chi2perNDF(esdV0Pos));\r
815             aodTrackRefs->AddAt(aodTrack,posFromV0);\r
816             //      if (fDebug > 0) printf("-------------------Bo: pos track from original pt %.3f \n",aodTrack->Pt());\r
817             if (esdV0Pos->GetSign() > 0) nPosTracks++;\r
818             aodTrack->ConvertAliPIDtoAODPID();\r
819             aodTrack->SetFlags(esdV0Pos->GetStatus());\r
820             SetAODPID(esdV0Pos,aodTrack,detpid,timezero,esd->GetMagneticField());\r
821         }\r
822         else {\r
823             aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(posFromV0));\r
824             //      if (fDebug > 0) printf("-------------------Bo pos track from refArray pt %.3f \n",aodTrack->Pt());\r
825         }\r
826         vV0->AddDaughter(aodTrack);\r
827     \r
828         // Add the negative tracks from the V0\r
829         \r
830         esdV0Neg->GetPxPyPz(momNeg);\r
831         esdV0Neg->GetXYZ(pos);\r
832         esdV0Neg->GetCovarianceXYZPxPyPz(covTr);\r
833         esdV0Neg->GetESDpid(pid);\r
834         \r
835         if (!usedTrack[negFromV0]) {\r
836             usedTrack[negFromV0] = kTRUE;\r
837             UInt_t selectInfo = 0;\r
838             if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Neg);\r
839             if(mcH)mcH->SelectParticle(esdV0Neg->GetLabel());\r
840             aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Neg->GetID(),\r
841                                                           esdV0Neg->GetLabel(),\r
842                                                           momNeg,\r
843                                                           kTRUE,\r
844                                                           pos,\r
845                                                           kFALSE,\r
846                                                           covTr, \r
847                                                           (Short_t)esdV0Neg->GetSign(),\r
848                                                           esdV0Neg->GetITSClusterMap(), \r
849                                                           pid,\r
850                                                           vV0,\r
851                                                           kTRUE,  // check if this is right\r
852                                                           vtx->UsesTrack(esdV0Neg->GetID()),\r
853                                                           AliAODTrack::kSecondary,\r
854                                                           selectInfo);\r
855             aodTrack->SetTPCClusterMap(esdV0Neg->GetTPCClusterMap());\r
856             aodTrack->SetTPCSharedMap (esdV0Neg->GetTPCSharedMap());\r
857             aodTrack->SetChi2perNDF(Chi2perNDF(esdV0Neg));\r
858             \r
859             aodTrackRefs->AddAt(aodTrack,negFromV0);\r
860             //      if (fDebug > 0) printf("-------------------Bo: neg track from original pt %.3f \n",aodTrack->Pt());\r
861             if (esdV0Neg->GetSign() > 0) nPosTracks++;\r
862             aodTrack->ConvertAliPIDtoAODPID();\r
863             aodTrack->SetFlags(esdV0Neg->GetStatus());\r
864             SetAODPID(esdV0Neg,aodTrack,detpid,timezero,esd->GetMagneticField());\r
865         }\r
866         else {\r
867             aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(negFromV0));\r
868             //      if (fDebug > 0) printf("-------------------Bo neg track from refArray pt %.3f \n",aodTrack->Pt());\r
869         }\r
870         vV0->AddDaughter(aodTrack);\r
871 \r
872 \r
873         // Add the V0 the V0 array as well\r
874         \r
875         Double_t  dcaV0Daughters      = v0->GetDcaV0Daughters();\r
876         Double_t  dcaV0ToPrimVertex   = v0->GetD(esd->GetPrimaryVertex()->GetX(),\r
877                                                  esd->GetPrimaryVertex()->GetY(),\r
878                                                  esd->GetPrimaryVertex()->GetZ());\r
879         v0->GetPPxPyPz(momPosAtV0vtx[0],momPosAtV0vtx[1],momPosAtV0vtx[2]); \r
880         v0->GetNPxPyPz(momNegAtV0vtx[0],momNegAtV0vtx[1],momNegAtV0vtx[2]); \r
881         \r
882         Double_t dcaDaughterToPrimVertex[2] = { 999., 999.}; // ..[0] = DCA in (x,y) for Pos and ..[1] = Neg\r
883         dcaDaughterToPrimVertex[0] = TMath::Abs(esdV0Pos->GetD(  esd->GetPrimaryVertex()->GetX(),\r
884                                                                  esd->GetPrimaryVertex()->GetY(),\r
885                                                                         esd->GetMagneticField()) );\r
886         dcaDaughterToPrimVertex[1] = TMath::Abs(esdV0Neg->GetD(  esd->GetPrimaryVertex()->GetX(),\r
887                                                                  esd->GetPrimaryVertex()->GetY(),\r
888                                                                         esd->GetMagneticField()) );\r
889         \r
890         aodV0 = new(v0s[jV0s++]) AliAODv0(vV0, \r
891                                         dcaV0Daughters,\r
892                                         dcaV0ToPrimVertex,\r
893                                         momPosAtV0vtx,\r
894                                         momNegAtV0vtx,\r
895                                         dcaDaughterToPrimVertex);\r
896 \r
897         // set the aod v0 on-the-fly status\r
898         aodV0->SetOnFlyStatus(v0->GetOnFlyStatus());\r
899     }//End of loop on V0s \r
900 \r
901     v0s.Expand(jV0s);    \r
902 \r
903     if (fDebug > 0)   printf("   NAODCascades=%d / NAODV0s=%d\n", jCascades, jV0s);\r
904     // end of V0 parts\r
905 \r
906 \r
907     // Kinks: it is a big mess the access to the information in the kinks\r
908     // The loop is on the tracks in order to find the mother and daugther of each kink\r
909     \r
910     \r
911     for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) {\r
912         \r
913         AliESDtrack * esdTrack = esd->GetTrack(iTrack);\r
914         \r
915         Int_t ikink = esdTrack->GetKinkIndex(0);\r
916         \r
917         if (ikink && nKinks) {\r
918             // Negative kink index: mother, positive: daughter\r
919             \r
920             // Search for the second track of the kink\r
921             \r
922             for (Int_t jTrack = iTrack+1; jTrack<nTracks; ++jTrack) {\r
923                 \r
924                 AliESDtrack * esdTrack1 = esd->GetTrack(jTrack);\r
925                 \r
926                 Int_t jkink = esdTrack1->GetKinkIndex(0);\r
927                 \r
928                 if ( TMath::Abs(ikink)==TMath::Abs(jkink) ) {\r
929                     \r
930                     // The two tracks are from the same kink\r
931                     \r
932                     if (usedKink[TMath::Abs(ikink)-1]) continue; // skip used kinks\r
933                     \r
934                     Int_t imother = -1;\r
935                     Int_t idaughter = -1;\r
936                     \r
937                     if (ikink<0 && jkink>0) {\r
938                         \r
939                         imother = iTrack;\r
940                         idaughter = jTrack;\r
941                     }\r
942                     else if (ikink>0 && jkink<0) {\r
943                         \r
944                         imother = jTrack;\r
945                         idaughter = iTrack;\r
946                     }\r
947                     else {\r
948 //                      cerr << "Error: Wrong combination of kink indexes: "\r
949 //                           << ikink << " " << jkink << endl;\r
950                         continue;\r
951                     }\r
952                     \r
953                     // Add the mother track if it passed primary track selection cuts\r
954                     \r
955                     AliAODTrack * mother = NULL;\r
956                     \r
957                     UInt_t selectInfo = 0;\r
958                     if (fTrackFilter) {\r
959                         selectInfo = fTrackFilter->IsSelected(esd->GetTrack(imother));\r
960                         if (!selectInfo) continue;\r
961                     }\r
962                     \r
963                     if (!usedTrack[imother]) {\r
964                         \r
965                         usedTrack[imother] = kTRUE;\r
966                         \r
967                         AliESDtrack *esdTrackM = esd->GetTrack(imother);\r
968                         esdTrackM->GetPxPyPz(p);\r
969                         esdTrackM->GetXYZ(pos);\r
970                         esdTrackM->GetCovarianceXYZPxPyPz(covTr);\r
971                         esdTrackM->GetESDpid(pid);\r
972                         if(mcH)mcH->SelectParticle(esdTrackM->GetLabel());\r
973                         mother = \r
974                             new(tracks[jTracks++]) AliAODTrack(esdTrackM->GetID(),\r
975                                                                esdTrackM->GetLabel(),\r
976                                                                p,\r
977                                                                kTRUE,\r
978                                                                pos,\r
979                                                                kFALSE,\r
980                                                                covTr, \r
981                                                                (Short_t)esdTrackM->GetSign(),\r
982                                                                esdTrackM->GetITSClusterMap(), \r
983                                                                pid,\r
984                                                                primary,\r
985                                                                kTRUE, // check if this is right\r
986                                                                vtx->UsesTrack(esdTrack->GetID()),\r
987                                                                AliAODTrack::kPrimary,\r
988                                                                selectInfo);\r
989                         mother->SetTPCClusterMap(esdTrackM->GetTPCClusterMap());\r
990                         mother->SetTPCSharedMap (esdTrackM->GetTPCSharedMap());\r
991                         mother->SetChi2perNDF(Chi2perNDF(esdTrackM));\r
992 \r
993                         aodTrackRefs->AddAt(mother, imother);\r
994                         \r
995                         if (esdTrackM->GetSign() > 0) nPosTracks++;\r
996                         mother->SetFlags(esdTrackM->GetStatus());\r
997                         mother->ConvertAliPIDtoAODPID();\r
998                         primary->AddDaughter(mother);\r
999                         mother->ConvertAliPIDtoAODPID();\r
1000                         SetAODPID(esdTrackM,mother,detpid,timezero,esd->GetMagneticField());\r
1001                     }\r
1002                     else {\r
1003 //                      cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1\r
1004 //                           << " track " << imother << " has already been used!" << endl;\r
1005                   }\r
1006                     \r
1007                     // Add the kink vertex\r
1008                     AliESDkink * kink = esd->GetKink(TMath::Abs(ikink)-1);\r
1009                     \r
1010                     AliAODVertex * vkink = \r
1011                         new(vertices[jVertices++]) AliAODVertex(kink->GetPosition(),\r
1012                                                                 NULL,\r
1013                                                                 0.,\r
1014                                                                 mother,\r
1015                                                                 esdTrack->GetID(),  // This is the track ID of the mother's track!\r
1016                                                                 AliAODVertex::kKink);\r
1017                     // Add the daughter track\r
1018                   \r
1019                     AliAODTrack * daughter = NULL;\r
1020                     \r
1021                     if (!usedTrack[idaughter]) {\r
1022                         \r
1023                         usedTrack[idaughter] = kTRUE;\r
1024                         \r
1025                         AliESDtrack *esdTrackD = esd->GetTrack(idaughter);\r
1026                         esdTrackD->GetPxPyPz(p);\r
1027                         esdTrackD->GetXYZ(pos);\r
1028                         esdTrackD->GetCovarianceXYZPxPyPz(covTr);\r
1029                         esdTrackD->GetESDpid(pid);\r
1030                         selectInfo = 0;\r
1031                         if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdTrackD);\r
1032                         if(mcH)mcH->SelectParticle(esdTrackD->GetLabel());\r
1033                         daughter = \r
1034                             new(tracks[jTracks++]) AliAODTrack(esdTrackD->GetID(),\r
1035                                                                esdTrackD->GetLabel(),\r
1036                                                                p,\r
1037                                                                kTRUE,\r
1038                                                                pos,\r
1039                                                                kFALSE,\r
1040                                                                covTr, \r
1041                                                                (Short_t)esdTrackD->GetSign(),\r
1042                                                                esdTrackD->GetITSClusterMap(), \r
1043                                                                pid,\r
1044                                                                vkink,\r
1045                                                                kTRUE, // check if this is right\r
1046                                                                vtx->UsesTrack(esdTrack->GetID()),\r
1047                                                                AliAODTrack::kSecondary,\r
1048                                                                selectInfo);\r
1049                         daughter->SetTPCClusterMap(esdTrackD->GetTPCClusterMap());\r
1050                         daughter->SetTPCSharedMap (esdTrackD->GetTPCSharedMap());\r
1051                         aodTrackRefs->AddAt(daughter, idaughter);\r
1052                         \r
1053                         if (esdTrackD->GetSign() > 0) nPosTracks++;\r
1054                         daughter->SetFlags(esdTrackD->GetStatus());\r
1055                         daughter->ConvertAliPIDtoAODPID();\r
1056                         vkink->AddDaughter(daughter);\r
1057                         daughter->ConvertAliPIDtoAODPID();\r
1058                        SetAODPID(esdTrackD,daughter,detpid,timezero,esd->GetMagneticField());\r
1059                     }\r
1060                     else {\r
1061 //                      cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1\r
1062 //                           << " track " << idaughter << " has already been used!" << endl;\r
1063                     }\r
1064                 }\r
1065             }\r
1066         }      \r
1067     }\r
1068     \r
1069   \r
1070     // Tracks (primary and orphan)\r
1071 \r
1072     if (fDebug > 0) printf("NUMBER OF ESD TRACKS %5d\n", nTracks);\r
1073     \r
1074     for (Int_t nTrack = 0; nTrack < nTracks; ++nTrack) {\r
1075         \r
1076         \r
1077         if (usedTrack[nTrack]) continue;\r
1078 \r
1079         AliESDtrack *esdTrack = esd->GetTrack(nTrack);\r
1080         UInt_t selectInfo = 0;\r
1081         //\r
1082         // Track selection\r
1083         if (fTrackFilter) {\r
1084             selectInfo = fTrackFilter->IsSelected(esdTrack);\r
1085             if (!selectInfo && !vtx->UsesTrack(esdTrack->GetID())) continue;\r
1086         }\r
1087         \r
1088         //\r
1089         esdTrack->GetPxPyPz(p);\r
1090         esdTrack->GetXYZ(pos);\r
1091         esdTrack->GetCovarianceXYZPxPyPz(covTr);\r
1092         esdTrack->GetESDpid(pid);\r
1093         if(mcH)mcH->SelectParticle(esdTrack->GetLabel());\r
1094         primary->AddDaughter(aodTrack =\r
1095                              new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),\r
1096                                                                 esdTrack->GetLabel(),\r
1097                                                                 p,\r
1098                                                                 kTRUE,\r
1099                                                                 pos,\r
1100                                                                 kFALSE,\r
1101                                                                 covTr, \r
1102                                                                 (Short_t)esdTrack->GetSign(),\r
1103                                                                 esdTrack->GetITSClusterMap(), \r
1104                                                                 pid,\r
1105                                                                 primary,\r
1106                                                                 kTRUE, // check if this is right\r
1107                                                                 vtx->UsesTrack(esdTrack->GetID()),\r
1108                                                                 AliAODTrack::kPrimary, \r
1109                                                                 selectInfo)\r
1110                              );\r
1111         aodTrack->SetTPCClusterMap(esdTrack->GetTPCClusterMap());\r
1112         aodTrack->SetTPCSharedMap (esdTrack->GetTPCSharedMap());\r
1113         aodTrack->SetChi2perNDF(Chi2perNDF(esdTrack));\r
1114 \r
1115         aodTrackRefs->AddAt(aodTrack, nTrack);\r
1116 \r
1117         \r
1118         if (esdTrack->GetSign() > 0) nPosTracks++;\r
1119         aodTrack->SetFlags(esdTrack->GetStatus());\r
1120         aodTrack->ConvertAliPIDtoAODPID();\r
1121         SetAODPID(esdTrack,aodTrack,detpid,timezero,esd->GetMagneticField());\r
1122     } // end of loop on tracks\r
1123     \r
1124     // Update number of AOD tracks in header at the end of track loop (M.G.)\r
1125     header->SetRefMultiplicity(jTracks);\r
1126     header->SetRefMultiplicityPos(nPosTracks);\r
1127     header->SetRefMultiplicityNeg(jTracks - nPosTracks);\r
1128     if (fDebug > 0) \r
1129       printf("   NAODTRACKS=%d  NPOS=%d  NNEG=%d\n", jTracks, nPosTracks, jTracks - nPosTracks);\r
1130     // Do not shrink the array of tracks - other filters may add to it (M.G)\r
1131     //   tracks.Expand(jTracks); // remove 'empty slots' due to unwritten tracks\r
1132   \r
1133     // Access to the AOD container of PMD clusters\r
1134     TClonesArray &pmdClusters = *(AODEvent()->GetPmdClusters());\r
1135     Int_t jPmdClusters=0;\r
1136   \r
1137     for (Int_t iPmd = 0; iPmd < nPmdClus; ++iPmd) {\r
1138       // file pmd clusters, to be revised!\r
1139       AliESDPmdTrack *pmdTrack = esd->GetPmdTrack(iPmd);\r
1140       Int_t nLabel = 0;\r
1141       Int_t *label = 0x0;\r
1142       Double_t posPmd[3] = { pmdTrack->GetClusterX(), pmdTrack->GetClusterY(), pmdTrack->GetClusterZ()};\r
1143       Double_t pidPmd[13] = { 0.}; // to be revised!\r
1144       // type not set!\r
1145       // assoc cluster not set\r
1146       new(pmdClusters[jPmdClusters++]) AliAODPmdCluster(iPmd, nLabel, label, pmdTrack->GetClusterADC(), posPmd, pidPmd);\r
1147     }\r
1148 \r
1149     // Access to the AOD container of clusters\r
1150     TClonesArray &caloClusters = *(AODEvent()->GetCaloClusters());\r
1151     Int_t jClusters=0;\r
1152  \r
1153     for (Int_t iClust=0; iClust<nCaloClus; ++iClust) {\r
1154 \r
1155       AliESDCaloCluster * cluster = esd->GetCaloCluster(iClust);\r
1156 \r
1157       Int_t  id        = cluster->GetID();\r
1158       Int_t  nLabel    = cluster->GetNLabels();\r
1159       Int_t *labels    = cluster->GetLabels();\r
1160       if(labels){ \r
1161                   for(int i = 0;i < nLabel;++i){\r
1162                           if(mcH)mcH->SelectParticle(labels[i]);\r
1163                   }\r
1164           }             \r
1165 \r
1166       Float_t energy = cluster->E();\r
1167       cluster->GetPosition(posF);\r
1168 \r
1169       AliAODCaloCluster *caloCluster = new(caloClusters[jClusters++]) AliAODCaloCluster(id,\r
1170                                                                                         nLabel,\r
1171                                                                                         labels,\r
1172                                                                                         energy,\r
1173                                                                                         posF,\r
1174                                                                                         NULL,\r
1175                                                                                         cluster->GetType(),0);\r
1176       \r
1177       caloCluster->SetCaloCluster(cluster->GetDistanceToBadChannel(),\r
1178                                   cluster->GetDispersion(),\r
1179                                   cluster->GetM20(), cluster->GetM02(),\r
1180                                   cluster->GetEmcCpvDistance(),  \r
1181                                   cluster->GetNExMax(),cluster->GetTOF()) ;\r
1182 \r
1183       caloCluster->SetPIDFromESD(cluster->GetPID());\r
1184       caloCluster->SetNCells(cluster->GetNCells());\r
1185       caloCluster->SetCellsAbsId(cluster->GetCellsAbsId());\r
1186       caloCluster->SetCellsAmplitudeFraction(cluster->GetCellsAmplitudeFraction());\r
1187 \r
1188       TArrayI* matchedT =       cluster->GetTracksMatched();\r
1189       if (nTracks>0 && matchedT && cluster->GetTrackMatchedIndex() >= 0) {      \r
1190         for (Int_t im = 0; im < matchedT->GetSize(); im++) {\r
1191             Int_t iESDtrack = matchedT->At(im);;\r
1192             if (aodTrackRefs->At(iESDtrack) != 0) {\r
1193                 caloCluster->AddTrackMatched((AliAODTrack*)aodTrackRefs->At(iESDtrack));\r
1194             }\r
1195         }\r
1196       }\r
1197       \r
1198     } \r
1199     caloClusters.Expand(jClusters); // resize TObjArray to 'remove' slots for pseudo clusters    \r
1200     // end of loop on calo clusters\r
1201 \r
1202     // fill EMCAL cell info\r
1203     if (esd->GetEMCALCells()) { // protection against missing ESD information\r
1204       AliESDCaloCells &esdEMcells = *(esd->GetEMCALCells());\r
1205       Int_t nEMcell = esdEMcells.GetNumberOfCells() ;\r
1206       \r
1207       AliAODCaloCells &aodEMcells = *(AODEvent()->GetEMCALCells());\r
1208       aodEMcells.CreateContainer(nEMcell);\r
1209       aodEMcells.SetType(AliAODCaloCells::kEMCALCell);\r
1210       for (Int_t iCell = 0; iCell < nEMcell; iCell++) {      \r
1211         aodEMcells.SetCell(iCell,esdEMcells.GetCellNumber(iCell),esdEMcells.GetAmplitude(iCell));\r
1212       }\r
1213       aodEMcells.Sort();\r
1214     }\r
1215 \r
1216     // fill PHOS cell info\r
1217     if (esd->GetPHOSCells()) { // protection against missing ESD information\r
1218       AliESDCaloCells &esdPHcells = *(esd->GetPHOSCells());\r
1219       Int_t nPHcell = esdPHcells.GetNumberOfCells() ;\r
1220       \r
1221       AliAODCaloCells &aodPHcells = *(AODEvent()->GetPHOSCells());\r
1222       aodPHcells.CreateContainer(nPHcell);\r
1223       aodPHcells.SetType(AliAODCaloCells::kPHOSCell);\r
1224       for (Int_t iCell = 0; iCell < nPHcell; iCell++) {      \r
1225         aodPHcells.SetCell(iCell,esdPHcells.GetCellNumber(iCell),esdPHcells.GetAmplitude(iCell));\r
1226       }\r
1227       aodPHcells.Sort();\r
1228     }\r
1229 \r
1230     // tracklets    \r
1231     AliAODTracklets &SPDTracklets = *(AODEvent()->GetTracklets());\r
1232     const AliMultiplicity *mult = esd->GetMultiplicity();\r
1233     if (mult) {\r
1234       if (mult->GetNumberOfTracklets()>0) {\r
1235         SPDTracklets.CreateContainer(mult->GetNumberOfTracklets());\r
1236 \r
1237         for (Int_t n=0; n<mult->GetNumberOfTracklets(); n++) {\r
1238           if(mcH){\r
1239             mcH->SelectParticle(mult->GetLabel(n, 0));\r
1240             mcH->SelectParticle(mult->GetLabel(n, 1));\r
1241           }\r
1242           SPDTracklets.SetTracklet(n, mult->GetTheta(n), mult->GetPhi(n), mult->GetDeltaPhi(n), mult->GetLabel(n, 0),mult->GetLabel(n, 1));\r
1243         }\r
1244       }\r
1245     } else {\r
1246       //Printf("ERROR: AliMultiplicity could not be retrieved from ESD");\r
1247     }\r
1248 \r
1249     delete [] usedKink;\r
1250     delete [] usedV0;\r
1251     delete [] usedTrack;    \r
1252     delete    aodV0Refs;\r
1253     delete    aodV0VtxRefs;\r
1254     delete    aodTrackRefs;\r
1255 \r
1256     return;\r
1257 }\r
1258 \r
1259 \r
1260 void AliAnalysisTaskESDfilter::SetAODPID(AliESDtrack *esdtrack, AliAODTrack *aodtrack, AliAODPid *detpid, Double_t timezero, Double_t bfield)\r
1261 {\r
1262   //\r
1263   // Setter for the raw PID detector signals\r
1264   //\r
1265 \r
1266   // Save PID object for candidate electrons\r
1267     Bool_t pidSave = kFALSE;\r
1268     if (fTrackFilter) {\r
1269         Bool_t selectInfo = fTrackFilter->IsSelected((char*) "Electrons");\r
1270         if (selectInfo)  pidSave = kTRUE;\r
1271     }\r
1272 \r
1273 \r
1274     // Tracks passing pt cut \r
1275     if(esdtrack->Pt()>fHighPthreshold) {\r
1276         pidSave = kTRUE;\r
1277     } else {\r
1278         if(fPtshape){\r
1279             if(esdtrack->Pt()> fPtshape->GetXmin()){\r
1280                 Double_t y = fPtshape->Eval(esdtrack->Pt())/fPtshape->Eval(fHighPthreshold);\r
1281                 if(gRandom->Rndm(0)<1./y){\r
1282                     pidSave = kTRUE;\r
1283                 }//end rndm\r
1284             }//end if p < pmin\r
1285         }//end if p function\r
1286     }// end else\r
1287 \r
1288     if (pidSave) {\r
1289       if(!aodtrack->GetDetPid()){// prevent memory leak when calling SetAODPID twice for the same track\r
1290         detpid = new AliAODPid();\r
1291         SetDetectorRawSignals(detpid,esdtrack,timezero, bfield);\r
1292         aodtrack->SetDetPID(detpid);\r
1293       }\r
1294     }\r
1295 }\r
1296 \r
1297 void AliAnalysisTaskESDfilter::SetDetectorRawSignals(AliAODPid *aodpid, AliESDtrack *track, Double_t timezero, Double_t bfield)\r
1298 {\r
1299 //\r
1300 //assignment of the detector signals (AliXXXesdPID inspired)\r
1301 //\r
1302  if(!track){\r
1303  AliInfo("no ESD track found. .....exiting");\r
1304  return;\r
1305  }\r
1306  // TPC momentum\r
1307  const AliExternalTrackParam *in=track->GetInnerParam();\r
1308  if (in) {\r
1309    aodpid->SetTPCmomentum(in->GetP());\r
1310  }else{\r
1311    aodpid->SetTPCmomentum(-1.);\r
1312  }\r
1313 \r
1314 \r
1315  aodpid->SetITSsignal(track->GetITSsignal());\r
1316  aodpid->SetTPCsignal(track->GetTPCsignal());\r
1317  aodpid->SetTPCsignalN(track->GetTPCsignalN());\r
1318 \r
1319  //n TRD planes = 6\r
1320  Int_t nslices = track->GetNumberOfTRDslices()*6;\r
1321  Double_t *trdslices = new Double_t[nslices];\r
1322  for(Int_t iSl =0; iSl < track->GetNumberOfTRDslices(); iSl++) {\r
1323    for(Int_t iPl =0; iPl<6; iPl++) trdslices[iPl*track->GetNumberOfTRDslices()+iSl] = track->GetTRDslice(iPl,iSl);\r
1324  }\r
1325  \r
1326 //TRD momentum\r
1327  for(Int_t iPl=0;iPl<6;iPl++){\r
1328    Double_t trdmom=track->GetTRDmomentum(iPl);\r
1329    aodpid->SetTRDmomentum(iPl,trdmom);\r
1330  }\r
1331 \r
1332  aodpid->SetTRDsignal(track->GetNumberOfTRDslices()*6,trdslices);\r
1333  Double_t times[AliAODPid::kSPECIES]; track->GetIntegratedTimes(times);\r
1334  aodpid->SetIntegratedTimes(times);\r
1335 \r
1336  aodpid->SetTOFsignal(track->GetTOFsignal()-timezero); // to be fixed\r
1337  aodpid->SetHMPIDsignal(track->GetHMPIDsignal());\r
1338 \r
1339  //Extrapolate track to EMCAL surface for AOD-level track-cluster matching\r
1340  Double_t emcpos[3] = {0.,0.,0.};\r
1341  Double_t emcmom[3] = {0.,0.,0.};\r
1342  aodpid->SetEMCALPosition(emcpos);\r
1343  aodpid->SetEMCALMomentum(emcmom);\r
1344 \r
1345  AliExternalTrackParam *outerparam = (AliExternalTrackParam*)track->GetOuterParam();\r
1346  if(!outerparam) return;\r
1347 \r
1348  //To be replaced by call to AliEMCALGeoUtils when the class becomes available\r
1349  Double_t radius = 441.0; //[cm] EMCAL radius +13cm\r
1350 \r
1351  Bool_t okpos = outerparam->GetXYZAt(radius,bfield,emcpos);\r
1352  Bool_t okmom = outerparam->GetPxPyPzAt(radius,bfield,emcmom);\r
1353  if(!(okpos && okmom)) return;\r
1354 \r
1355  aodpid->SetEMCALPosition(emcpos);\r
1356  aodpid->SetEMCALMomentum(emcmom);\r
1357 \r
1358 }\r
1359 \r
1360 Double_t  AliAnalysisTaskESDfilter::Chi2perNDF(AliESDtrack* track)\r
1361 {\r
1362     // Calculate chi2 per ndf for track\r
1363     Int_t  nClustersTPC = track->GetTPCNcls();\r
1364 \r
1365     if ( nClustersTPC > 5) {\r
1366        return (track->GetTPCchi2()/Float_t(nClustersTPC - 5));\r
1367     } else {\r
1368        return (-1.);\r
1369     }\r
1370  }\r
1371 \r
1372 \r
1373 \r
1374 void AliAnalysisTaskESDfilter::Terminate(Option_t */*option*/)\r
1375 {\r
1376 // Terminate analysis\r
1377 //\r
1378     if (fDebug > 1) printf("AnalysisESDfilter: Terminate() \n");\r
1379 }\r
1380 \r
1381 void  AliAnalysisTaskESDfilter::PrintMCInfo(AliStack *pStack,Int_t label){\r
1382   if(!pStack)return;\r
1383   label = TMath::Abs(label);\r
1384   TParticle *part = pStack->Particle(label);\r
1385   Printf("########################");\r
1386   Printf("%s:%d %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,label,part->GetUniqueID(),part->GetPdgCode(),part->P());\r
1387   part->Print();\r
1388   TParticle* mother = part;\r
1389   Int_t imo = part->GetFirstMother();\r
1390   Int_t nprim = pStack->GetNprimary();\r
1391   //  while((imo >= nprim) && (mother->GetUniqueID() == 4)) {\r
1392   while((imo >= nprim)) {\r
1393     mother =  pStack->Particle(imo);\r
1394     Printf("Mother %s:%d Label %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,imo,mother->GetUniqueID(),mother->GetPdgCode(),mother->P());\r
1395     mother->Print();\r
1396     imo =  mother->GetFirstMother();\r
1397   }\r
1398   Printf("########################");\r
1399 }\r