1 /**************************************************************************
2 * Copyright(c) 2007, ALICE Experiment at CERN, All rights reserved. *
4 * Author: The ALICE Off-line Project. *
5 * Contributors are mentioned in the code where appropriate. *
7 * Permission to use, copy, modify and distribute this software and its *
8 * documentation strictly for non-commercial purposes is hereby granted *
9 * without fee, provided that the above copyright notice appears in all *
10 * copies and that both the copyright notice and this permission notice *
11 * appear in the supporting documentation. The authors make no claims *
12 * about the suitability of this software for any purpose. It is *
13 * provided "as is" without express or implied warranty. *
14 **************************************************************************/
18 // This class decodes the stream of ALTRO samples to extract
19 // the PHOS "digits" of current event. Uses fitting procedure
20 // to separate reasonable samples
23 // AliRawReader* rf = new AliRawReaderDate("2006run2211.raw");
24 // AliPHOSRawDecoder dc(rf);
25 // while (rf->NextEvent()) {
26 // dc.SubtractPedestals(kTRUE);
27 // while ( dc.NextDigit() ) {
28 // Int_t module = dc.GetModule();
29 // Int_t column = dc.GetColumn();
30 // Int_t row = dc.GetRow();
31 // Double_t amplitude = dc.GetEnergy();
32 // Double_t time = dc.GetTime();
33 // Bool_t IsLowGain = dc.IsLowGain();
38 // Author: Dmitri Peressounko
40 // --- ROOT system ---
51 // --- AliRoot header files ---
53 #include "AliPHOSRawDecoderv1.h"
54 #include "AliPHOSPulseGenerator.h"
57 ClassImp(AliPHOSRawDecoderv1)
59 //-----------------------------------------------------------------------------
60 AliPHOSRawDecoderv1::AliPHOSRawDecoderv1():AliPHOSRawDecoder(),
61 fSampleParamsLow(0x0),fSampleParamsHigh(0x0),fToFit(0x0)
63 //Default constructor.
66 //-----------------------------------------------------------------------------
67 AliPHOSRawDecoderv1::AliPHOSRawDecoderv1(AliRawReader* rawReader, AliAltroMapping **mapping):
68 AliPHOSRawDecoder(rawReader,mapping),
69 fSampleParamsLow(0x0),fSampleParamsHigh(0x0),fToFit(0x0)
71 //Construct a decoder object.
72 //Is is user responsibility to provide next raw event
73 //using AliRawReader::NextEvent().
76 gMinuit = new TMinuit(100);
77 fSampleParamsHigh =new TArrayD(7) ;
78 fSampleParamsHigh->AddAt(2.174,0) ;
79 fSampleParamsHigh->AddAt(0.106,1) ;
80 fSampleParamsHigh->AddAt(0.173,2) ;
81 fSampleParamsHigh->AddAt(0.06106,3) ;
82 //last two parameters are pedestal and overflow
83 fSampleParamsLow=new TArrayD(7) ;
84 fSampleParamsLow->AddAt(2.456,0) ;
85 fSampleParamsLow->AddAt(0.137,1) ;
86 fSampleParamsLow->AddAt(2.276,2) ;
87 fSampleParamsLow->AddAt(0.08246,3) ;
88 fToFit = new TList() ;
91 //-----------------------------------------------------------------------------
92 AliPHOSRawDecoderv1::~AliPHOSRawDecoderv1()
96 delete fSampleParamsLow ;
99 if(fSampleParamsHigh){
100 delete fSampleParamsHigh ;
109 //-----------------------------------------------------------------------------
110 AliPHOSRawDecoderv1::AliPHOSRawDecoderv1(const AliPHOSRawDecoderv1 &phosDecoder ):
111 AliPHOSRawDecoder(phosDecoder),
112 fSampleParamsLow(0x0),fSampleParamsHigh(0x0),fToFit(0x0)
115 fToFit = new TList() ;
116 fSampleParamsLow =new TArrayD(*(phosDecoder.fSampleParamsLow)) ;
117 fSampleParamsHigh=new TArrayD(*(phosDecoder.fSampleParamsHigh)) ;
120 //-----------------------------------------------------------------------------
121 AliPHOSRawDecoderv1& AliPHOSRawDecoderv1::operator = (const AliPHOSRawDecoderv1 &phosDecoder)
123 //Assignment operator.
125 // if(this != &phosDecoder) {
127 fToFit = new TList() ;
128 if(fSampleParamsLow){
129 fSampleParamsLow = phosDecoder.fSampleParamsLow ;
130 fSampleParamsHigh= phosDecoder.fSampleParamsHigh ;
133 fSampleParamsLow =new TArrayD(*(phosDecoder.fSampleParamsLow)) ;
134 fSampleParamsHigh=new TArrayD(*(phosDecoder.fSampleParamsHigh)) ;
139 //-----------------------------------------------------------------------------
140 Bool_t AliPHOSRawDecoderv1::NextDigit()
142 //Extract an energy deposited in the crystal,
143 //crystal' position (module,column,row),
144 //time and gain (high or low).
145 //First collects sample, then evaluates it and if it has
146 //reasonable shape, fits it with Gamma2 function and extracts
149 //Debug=====================
150 // TCanvas * c = 0; //(TCanvas*)gROOT->FindObjectAny("CSample") ;
152 // c = new TCanvas("CSample","CSample") ;
154 // TH1D * h = 0 ; //(TH1D*)gROOT->FindObjectAny("hSample") ;
156 // h=new TH1D("hSample","",200,0.,200.) ;
158 // TF1 * fff = 0 ; //(TF1*)gROOT->FindObjectAny("fff") ;
160 // fff = new TF1("fff","[0]+[1]*((abs(x-[2]))^[3]*exp(-(x-[2])*[4])+[5]*(x-[2])*(x-[2])*exp(-(x-[2])*[6]))",0.,1000.) ;
161 //End debug===========
163 AliCaloRawStream* in = fCaloStream;
165 Int_t iBin = fSamples->GetSize() ;
171 Float_t baseLine = 1.0;
172 const Float_t nPreSamples = 10;
174 const Float_t sampleMaxHG=102.332 ; //maximal height of HG sample with given parameterization
175 const Float_t sampleMaxLG=277.196 ; //maximal height of HG sample with given parameterization
176 const Float_t maxEtoFit=5 ; //fit only samples above this energy, accept all samples (with good aRMS) below it
178 while ( in->Next() ) {
181 tLength = in->GetTimeLength();
182 if(tLength!=fSamples->GetSize()) {
185 fSamples = new TArrayI(tLength);
186 fTimes = new TArrayI(tLength);
187 iBin= fSamples->GetSize() ;
194 // Fit the full sample
195 if((in->IsNewHWAddress() && iBin != fSamples->GetSize()) //new HW address
196 ||(iBin<=0)) { //or new signal in same address
198 //First remember new sample
199 fNewLowGainFlag = in->IsLowGain();
200 fNewModule = in->GetModule()+1;
201 fNewRow = in->GetRow() +1;
202 fNewColumn = in->GetColumn()+1;
203 fNewAmp = in->GetSignal() ;
204 fNewTime=in->GetTime() ;
206 //now handle already collected
207 Double_t pedestal =0. ;
211 pedestal = (Double_t)(pedMean/nPed);
212 fPedestalRMS=pedRMS/nPed-pedestal*pedestal ;
213 if(fPedestalRMS>0.) fPedestalRMS=TMath::Sqrt(fPedestalRMS) ;
219 pedestal = fAmpOffset ;
222 //calculate time and energy
229 for(Int_t i=iBin; i<fSamples->GetSize(); i++){
230 if(fSamples->At(i)>pedestal){
231 Double_t de=fSamples->At(i)-pedestal ;
237 if(de>2 && tStart==0)
239 if(maxAmp<fSamples->At(i)){
241 maxAmp=fSamples->At(i) ;
245 if(maxBin==fSamples->GetSize()-1){//bad "rising" sample
251 fEnergy=Double_t(maxAmp)-pedestal ;
252 fOverflow =0 ; //look for plato on the top of sample
253 if(fEnergy>500 && //this is not fluctuation of soft sample
254 maxBin<fSamples->GetSize()-1 && fSamples->At(maxBin+1)==maxAmp){ //and there is a plato
260 aRMS=aRMS/wts-aMean*aMean;
263 //do not take too small energies
264 if(fEnergy < baseLine)
267 //do not test quality of too soft samples
268 if(fEnergy<maxEtoFit){
269 fTime=fTimes->At(tStart);
270 if(aRMS<2.) //sigle peak
278 //Debug:=====Draw sample
279 //if(fEnergy>pedestal+10.){
280 //if(fLowGainFlag && fEnergy>2){
282 // if(!fLowGainFlag && fRow==32 && fColumn==18){
283 // TCanvas *c = new TCanvas("CSample","CSample") ;
287 // printf("fEnergy=%f, aRMS=%f \n",fEnergy,aRMS) ;
290 //======================
292 //IF sample has reasonable mean and RMS, try to fit it with gamma2
294 gMinuit->mncler(); // Reset Minuit's list of paramters
295 gMinuit->SetPrintLevel(-1) ; // No Printout
296 gMinuit->SetFCN(AliPHOSRawDecoderv1::UnfoldingChiSquare) ;
297 // To set the address of the minimization function
299 fToFit->Clear("nodelete") ;
300 Double_t b,bmin,bmax ;
302 fSampleParamsLow->AddAt(pedestal,4) ;
304 fSampleParamsLow->AddAt(double(maxAmp),5) ;
306 fSampleParamsLow->AddAt(double(1023),5) ;
307 fSampleParamsLow->AddAt(double(iBin),6) ;
308 fToFit->AddFirst((TObject*)fSampleParamsLow) ;
309 b=fSampleParamsLow->At(2) ;
314 fSampleParamsHigh->AddAt(pedestal,4) ;
316 fSampleParamsHigh->AddAt(double(maxAmp),5) ;
318 fSampleParamsHigh->AddAt(double(1023),5);
319 fSampleParamsHigh->AddAt(double(iBin),6);
320 fToFit->AddFirst((TObject*)fSampleParamsHigh) ;
321 b=fSampleParamsHigh->At(2) ;
325 fToFit->AddLast((TObject*)fSamples) ;
326 fToFit->AddLast((TObject*)fTimes) ;
328 gMinuit->SetObjectFit((TObject*)fToFit) ; // To tranfer pointer to UnfoldingChiSquare
330 gMinuit->mnparm(0, "t0", 1.*tStart, 0.01, -500., 500., ierflg) ;
332 // AliWarning(Form("Unable to set initial value for fit procedure : t0=%e\n",1.*tStart) ) ;
336 return kTRUE ; //will scan further
340 amp0=fEnergy/sampleMaxLG;
342 amp0=fEnergy/sampleMaxHG;
344 gMinuit->mnparm(1, "Energy", amp0 , 0.01*amp0, 0, 0, ierflg) ;
346 // AliWarning(Form("Unable to set initial value for fit procedure : E=%e\n", amp0)) ;
350 return kTRUE ; //will scan further
353 gMinuit->mnparm(2, "p2", b, 0.01*b, bmin, bmax, ierflg) ;
355 // AliWarning(Form("Unable to set initial value for fit procedure : E=%e\n", amp0)) ;
359 return kTRUE ; //will scan further
363 Double_t p0 = 0.0001 ; // "Tolerance" Evaluation stops when EDM = 0.0001*p0 ; The number of function call slightly
367 gMinuit->mnexcm("SET STR", &p2, 0, ierflg) ; // force TMinuit to reduce function calls
368 gMinuit->mnexcm("SET GRA", &p1, 1, ierflg) ; // force TMinuit to use my gradient
369 // gMinuit->SetMaxIterations(100);
370 gMinuit->mnexcm("SET NOW", &p2 , 0, ierflg) ; // No Warnings
372 gMinuit->mnexcm("MIGRAD", &p0, 0, ierflg) ; // minimize
376 gMinuit->GetParameter(0,t0, t0err) ;
377 gMinuit->GetParameter(1,efit, err) ;
379 Double_t bfit, berr ;
380 gMinuit->GetParameter(2,bfit,berr) ;
382 //Calculate total energy
383 //this isparameterization of depetendence of pulse height on parameter b
385 efit*=99.54910 + 78.65038*bfit ;
387 efit*=80.33109+128.6433*bfit ;
389 if(efit<0. || efit > 10000.){
390 //set energy to previously found max
391 // fEnergy=0 ; //bad sample
397 //evaluate fit quality
398 Double_t fmin,fedm,errdef ;
399 Int_t npari,nparx,istat;
400 gMinuit->mnstat(fmin,fedm,errdef,npari,nparx,istat) ;
401 fQuality=fmin/(fSamples->GetSize()-iBin) ;
402 //compare quality with some parameterization
404 fQuality/=2.+0.002*fEnergy ;
407 fQuality/=0.75+0.0025*fEnergy ;
410 //Debug================
411 // Double_t n,alpha,beta ;
414 // n=fSampleParamsLow->At(0) ;
415 // alpha=fSampleParamsLow->At(1) ;
416 // beta=fSampleParamsLow->At(3) ;
417 // en=efit/(99.54910 + 78.65038*bfit) ;
420 // n=fSampleParamsHigh->At(0) ;
421 // alpha=fSampleParamsHigh->At(1) ;
422 // beta=fSampleParamsHigh->At(3) ;
423 // en=efit/(80.33109+128.6433*bfit) ;
426 //// if( fQuality > 1 && fEnergy > 20. && !fOverflow){
427 //// if(!fLowGainFlag && fRow==32 && fColumn==18){
429 // printf("Col=%d, row=%d, qual=%f, E=%f, t0=%f, b=%f\n",fColumn,fRow,fQuality,efit,t0,bfit) ;
430 // printf(" Energy = %f \n",fEnergy) ;
431 // TCanvas * c = new TCanvas("samp") ;
435 // fff->SetParameters(pedestal,en,t0,n,alpha,bfit,beta) ;
438 // fff->SetParameters(pedestal,en,t0,n,alpha,bfit,beta) ;
440 ////// for(Int_t i=1;i<=h->GetNbinsX(); i++){
441 //// Double_t x=h->GetBinCenter(i) ;
442 //// h->SetBinContent(i,h->GetBinContent(i)-fff->Eval(x)) ;
444 //// h->SetMinimum(-15.) ;
445 //// h->SetMaximum(15.) ;
447 // fff->Draw("same") ;
451 //====================
454 fTime=t0-4.024*bfit ; //-10.402*bfit+4.669*bfit*bfit ; //Correction for 70 samples
455 // fTime=t0+2.8*bfit ; //-10.402*bfit+4.669*bfit*bfit ; //Correction for 50 samples
461 fLowGainFlag = in->IsLowGain();
462 fModule = in->GetModule()+1;
463 fRow = in->GetRow() +1;
464 fColumn = in->GetColumn()+1;
466 //add previouly taken if coincides
467 if(fLowGainFlag==fNewLowGainFlag && fModule==fNewModule &&
468 fRow==fNewRow && fColumn==fNewColumn){
470 if(fPedSubtract && fNewTime < nPreSamples) {
471 pedMean += in->GetSignal();
472 pedRMS += in->GetSignal()*in->GetSignal() ;
475 fSamples->AddAt(fNewAmp,iBin);
476 fTimes->AddAt(fNewTime,iBin);
478 //Mark that we already take it
482 // Fill array with samples
484 if(fPedSubtract && (in->GetTime() < nPreSamples)) {
485 pedMean += in->GetSignal();
486 pedRMS += in->GetSignal()*in->GetSignal() ;
489 fSamples->AddAt(in->GetSignal()-10,iBin);
490 fTimes->AddAt(in->GetTime(),iBin);
492 //Debug==============
493 // h->SetBinContent(in->GetTime(),in->GetSignal()) ;
494 //EndDebug==============
500 //_____________________________________________________________________________
501 void AliPHOSRawDecoderv1::UnfoldingChiSquare(Int_t & /*nPar*/, Double_t * Grad, Double_t & fret, Double_t * x, Int_t iflag)
503 // Number of parameters, Gradient, Chi squared, parameters, what to do
505 TList * toFit= (TList*)gMinuit->GetObjectFit() ;
506 TArrayD * params=(TArrayD*)toFit->At(0) ;
507 TArrayI * samples = (TArrayI*)toFit->At(1) ;
508 TArrayI * times = (TArrayI*)toFit->At(2) ;
512 for(Int_t iparam = 0 ; iparam < 3 ; iparam++)
513 Grad[iparam] = 0 ; // Will evaluate gradient
518 Double_t n=params->At(0) ;
519 Double_t alpha=params->At(1) ;
520 Double_t beta=params->At(3) ;
521 Double_t ped=params->At(4) ;
523 Double_t overflow=params->At(5) ;
524 Int_t iBin = (Int_t) params->At(6) ;
525 Int_t nSamples=TMath::Min(iBin+70,samples->GetSize()) ; //Here we set number of points to fit (70)
526 // iBin - first non-zero sample
527 Int_t tStep=times->At(iBin+1)-times->At(iBin) ;
528 Double_t ddt=times->At(iBin)-t0-tStep ;
529 Double_t exp1=TMath::Exp(-alpha*ddt) ;
530 Double_t exp2=TMath::Exp(-beta*ddt) ;
531 Double_t dexp1=TMath::Exp(-alpha*tStep) ;
532 Double_t dexp2=TMath::Exp(-beta*tStep) ;
533 for(Int_t i = iBin; i<nSamples ; i++) {
534 Double_t dt=double(times->At(i))-t0 ;
535 Double_t fsample = double(samples->At(i)) ;
536 if(fsample>=overflow)
546 Double_t dtn=TMath::Power(dt,n) ;
547 Double_t dtnE=dtn*exp1 ;
548 Double_t dt2E=dt*dt*exp2 ;
549 Double_t fit=ped+en*(dtnE + b*dt2E) ;
550 // if(fit>=overflow){
551 // diff=fsample-overflow ;
552 // fret += diff*diff ;
553 // //zero gradient here
556 diff = fsample - fit ;
558 if(iflag == 2){ // calculate gradient
559 Grad[0] += en*diff*(dtnE*(n/dt-alpha)+b*dt2E*(2./dt-beta)) ; //derivative over t0
560 Grad[1] -= diff*(dtnE+b*dt2E) ;
561 Grad[2] -= en*diff*dt2E ;
566 for(Int_t iparam = 0 ; iparam < 3 ; iparam++)
569 //-----------------------------------------------------------------------------
570 Double_t AliPHOSRawDecoderv1::Gamma2(Double_t dt,Double_t en,Double_t b,TArrayD * params){ //Function for fitting samples
572 //dt-time after start
574 //function parameters
576 Double_t ped=params->At(4) ;
578 return ped ; //pedestal
580 return ped+en*(TMath::Power(dt,params->At(0))*TMath::Exp(-dt*params->At(1))+b*dt*dt*TMath::Exp(-dt*params->At(3))) ;