PWG4/macros/AnalysisTrainPWG4.C

   1 // =============================================================================
   2 // ### General Steering variables
   3 // =============================================================================
   4 //== general setup variables
   5 TString     kTrainName         = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
   6 TString     kJobTag            = "PWG4 Analysis train configured"; // *CHANGE ME*
   7
   8
   9 // Usage of par files ONLY in grid mode and ONLY if the code is not available
  10 // in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
  11 // To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
  12 // AliRoot.
  13 Bool_t      kUsePAR             = kFALSE;  // use par files for extra libs
  14 Bool_t      kUseCPAR            = kFALSE;  // use par files for common libs
  15 Bool_t      kFillAOD = kFALSE;  // switch of AOD filling for on the fly analysis
  16 Int_t       kSaveAOD = 8;        // Bit switch 1 = Full AOD 2 = Jet AOD , 4 = PartCorr, 8 = JCORRAN
  17
  18
  19 //== general input and output variables
  20 Int_t       iAODanalysis       = 0;      // Analysis on input AOD's
  21 Int_t       iAODhandler        = 1;      // Analysis produces an AOD or dAOD's
  22 Int_t       iCentralitySelection  = 0;      // Use the centrality
  23 Int_t       iESDfilter         = 0;      // ESD to AOD filter (barrel + muon tracks)
  24 Int_t       iPhysicsSelection  = 1;      // ESD to AOD filter (barrel + muon tracks)
  25 UInt_t      iPhysicsSelectionFlag = 0; // set by pyshics selection and passed to the task, kMB, kUserDefined etc
  26 Bool_t      useTender           = kFALSE; // use tender wagon
  27 Bool_t      kUseKinefilter     = kFALSE; // use Kinematics filter
  28 Bool_t      kUseMuonfilter     = kFALSE; //
  29 TString     kCommonOutputFileName = "PWG4_JetTasksOutput.root";
  30 TString     kCaloQAOutputFileName = "PWG4_CaloQAOutput.root";
  31
  32 //== general process variables
  33
  34 // ### Other flags to steer the analysis
  35 //==============================================================================
  36 Bool_t      kSkipTerminate      = kTRUE; // Do not call Teminate
  37 Bool_t      kUseDate            = kFALSE; // use date in train name
  38 Bool_t      kUseDebug           = kTRUE; // activate debugging
  39 Int_t       kErrorIgnoreLevel = -1; // takes the errror print level from .rootrc
  40 // From TError.h:
  41 // const Int_t kUnset    =  -1;
  42 // const Int_t kPrint    =   0;
  43 // const Int_t kInfo     =   1000;
  44 // const Int_t kWarning  =   2000;
  45 // const Int_t kError    =   3000;
  46 // const Int_t kBreak    =   4000;
  47 // const Int_t kSysError =   5000;
  48 // const Int_t kFatal    =   6000;
  49 Int_t       kUseSysInfo         = 0; // activate debugging
  50 Long64_t    kNumberOfEvents     = 1234567890; // number of events to process from the chain
  51 Bool_t      kUseMC              = kFALSE;  // use MC info
  52 Bool_t      kIsMC               = kFALSE;  // is MC info, if false it overwrites Use(AOD)MC
  53 Bool_t      kUseAODMC           = kFALSE;  // use MC infA
  54 Bool_t      kUseESDTags         = kFALSE; // use ESD tags for selection
  55 Bool_t      kUseTR              = kFALSE;  // use track references
  56 Bool_t      kUseAODTags         = kFALSE;  // use AOD tags
  57 Bool_t      kSaveTrain          = kFALSE;  // save train configuration as:
  58 Bool_t      kIsPbPb             = kFALSE;  // Pb+Pb
  59
  60
  61 // ### Analysis modules to be included. Some may not be yet fully implemented.
  62 //==============================================================================
  63 Int_t       iJETAN                 = 2;      // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
  64 TString     kDefaultJetBranch     = "";      // is currently set when filled (iJETAN or clusters)
  65 TString     kDefaultJetBackgroundBranch     = "";      // is currently set when filled (jet clsuters
  66 Int_t       iDIJETAN                = 1;
  67 Int_t       iJETANLib             = 1;
  68 Int_t       iPWG4JetTasks      = 0;      // all jet tasks flag for lib laoding
  69 Int_t       iPWG4JetServices   = 1;      // jet spectrum analysis
  70 Int_t       iPWG4JetSpectrum   = 1;      // jet spectrum analysis
  71 Int_t       iPWG4JCORRAN       = 0;      // JCORRAN module
  72 Int_t       iPWG4LeadingUE     = 1;      // Underlying Event analysis
  73 Int_t       iPWG4Fragmentation = 1;      // Official Fragmentation
  74 Int_t       iPWG4JetChem       = 0;      // Jet chemistry
  75 Int_t       iPWG4PtQAMC        = 0;      // Marta's QA tasks
  76 Int_t       iPWG4PtSpectra     = 1;      // Marta's QA tasks
  77 Int_t       iPWG4PtQATPC       = 0;      // Marta's QA tasks
  78 Int_t       iPWG4Cosmics       = 0;      // Marta's Cosmics Taks
  79 Int_t       iPWG4QGSep         = 0;          // Sona's QG Separation task
  80 Int_t       iPWG4Minijet       = 0;      // Eva's Mini Jet Task cluster task
  81 Int_t       iPWG4KMeans        = 0;      // Andreas' KMeans task
  82 Int_t       iPWG4Cluster       = 1;      //
  83 Int_t       iEMCUtilLibs       = 0;      // Flag to satisfy dependence on EMC utils
  84 Int_t       iPWG4PartCorrLibs  = 0;      // Gustavo's part corr analysis
  85 Int_t       iPWG4PartCorr      = 1;      // Gustavo's part corr analysis
  86 Int_t       iPWG4CaloQA        = 0;      // Gustavo's part corr analysis
  87 Int_t       iPWG4JetCorr       = 0;     // Paul's jet corr analysis
  88 Int_t       iPWG4Tagged        = 0;      // Gustavo's part corr analysis
  89 Int_t       iPWG4omega3pi      = 0;      // Omega to 3 pi analysis (PWG4)
  90 Int_t       iPWG4GammaConvLib     = 0;      // Gamma Conversio
  91 Int_t       iPWG4GammaConv     = 1;      // Gamma Conversio
  92 Int_t       iPWG4CaloConv     = 0;      // Gamma Conversio
  93 Int_t       kHighPtFilterMask  = 256;     // change depending on the used AOD Filter
  94 TString     kDeltaAODJetName   = ""; // AliAOD.Jets.root";
  95 TString     kDeltaAODJCORRANName   = "AliAOD.JCORRAN.root";
  96 TString     kDeltaAODPartCorrName   = "AliAOD.PartCorr.root";
  97
  98
  99 //==============================================================================
 100 // ### PROOF Steering varibales
 101 //==============================================================================
 102 //== proof setup variables
 103 TString     kProofCluster      = "alicecaf.cern.ch";
 104 Bool_t      kProofUseAFPAR     = kFALSE;  // use AF special par file
 105 TString     kProofAFversion          = "AF-v4-17";
 106 //== proof input and output variables
 107 TString     kProofDataSet      = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
 108 Bool_t      kProofSaveToAlien   = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
 109 TString     kProofOutdir       = "";
 110 Bool_t      kProofClearPackages = kFALSE;
 111 Int_t       kProofEvents = 10000;
 112 Int_t       kProofOffset = 0;
 113 //== proof process variables
 114
 115
 116 //==============================================================================
 117 // ### Grid plugin Steering varibiables
 118 //==============================================================================
 119 //== grid plugin setup variables
 120 Bool_t      kPluginUse         = kTRUE;   // do not change
 121 Bool_t      kPluginUseProductionMode  = kFALSE;   // use the plugin in production mode
 122 TString     kPluginRootVersion       = "v5-27-06b";  // *CHANGE ME IF MORE RECENT IN GRID*
 123 TString     kPluginAliRootVersion    = "v4-21-09-AN";  // *CHANGE ME IF MORE RECENT IN GRID*
 124 Bool_t      kPluginMergeViaJDL       = kTRUE;  // merge via JDL
 125 Bool_t      kPluginFastReadOption   = kFALSE;  // use xrootd tweaks
 126 Bool_t      kPluginOverwriteMode    = kTRUE;  // overwrite existing collections
 127 Int_t       kPluginOutputToRunNumber = 1;     // write the output to subdirs named after run number
 128 TString     kPluginExecutableCommand = "root -b -q";
 129 // TString     kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
 130
 131 // == grid plugin input and output variables
 132 TString     kGridDataDir      = "/alice/data/2010/LHC10e/";
 133 Int_t       kGridMaxRunsFromList = 999999999;
 134 Int_t       kGridOffsetRunFromList = 0; // skip the first n runs from the list
 135 TString     kGridLocalRunList = "";
 136 TString     kGridOutdir       = ""; // AliEn output directory. If blank will become output_<kTrainName>
 137 TString     kGridDataSet      = "LHC10e"; // sub working directory not to confuse different run xmls
 138 Int_t       kGridRunRange[2]       =  {127724, 127730}; // Set the run range
 139 TString     kGridRunPattern        = "%09d"; // important for leading zeroes!!
 140 TString     kGridPassPattern       = "pass1";
 141 TString     kGridExtraFiles        = ""; // files that will be added to the input list in the JDL...
 142 Int_t       kGridMaxMergeFiles      = 12; // Number of files merged in a chunk grid run range
 143 TString     kGridMergeExclude       = "AliAOD.root"; // Files that should not be merged
 144 TString     kGridOutputStorages      = "disk=2"; // Make replicas on the storages
 145 // == grid process variables
 146 Int_t       kGridRunsPerMaster     = 100; // Number of runs per master job
 147 Int_t       kGridFilesPerJob       = 100; // Maximum number of files per job (gives size of AOD)
 148
 149 //==============================================================================
 150 // ### Local Steering variables
 151 //==============================================================================
 152 //== local setup variables
 153 //== local input and output variables
 154 TString     kLocalXMLDataset   = ""; // Change local xml dataset for local interactive analysis
 155 TString     kLocalDataList   = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
 156 // == local process variables
 157
 158 TString kPluginMode;
 159
 160
 161 // Temporaries.
 162 TString anaPars = "";
 163 TString anaLibs = "";
 164 TString anaLibsExtra = "";
 165 TString anaSources = "";
 166 // Function signatures
 167 class AliAnalysisAlien;
 168
 169 //______________________________________________________________________________
 170 void AnalysisTrainPWG4(const char *analysis_mode="local",
 171                            const char *plugin_mode="",
 172                            const char *config_file="",Int_t iOffset = 0,Int_t iTotal = 0)
 173 {
 174 // Main analysis train macro. If a configuration file is provided, all parameters
 175 // are taken from there but may be altered by CheckModuleFlags.
 176
 177   // these flag may be needed by the config file
 178   kPluginMode = plugin_mode;
 179
 180   if (strlen(config_file) && !LoadConfig(config_file)) return;
 181   if(iTotal>0)kGridMaxRunsFromList = iTotal; // overwrites the settings from config file
 182   if(iOffset)kGridOffsetRunFromList = iOffset;
 183   if(iOffset)kProofOffset = iOffset;
 184
 185
 186    TString smode(analysis_mode);
 187    smode.ToUpper();
 188    // Check compatibility of selected modules
 189    CheckModuleFlags(smode);
 190    //     gROOT->ProcessLine(".trace");
 191
 192    printf("==================================================================\n");
 193    printf("===========    RUNNING ANALYSIS TRAIN %s IN %s MODE   ==========\n", kTrainName.Data(),smode.Data());
 194    printf("==================================================================\n");
 195                               printf("=  Configuring analysis train for:                               =\n");
 196    if (iAODanalysis) printf("=  AOD analysis                                                  =\n");
 197    else                     printf("=  ESD analysis                                                  =\n");
 198    if (iPhysicsSelection)   printf("=  Physics selection                                                =\n");
 199    if(iCentralitySelection)printf("=  Centrality selection                                                =\n");
 200    if (useTender)   printf("=  Using tender                                                =\n");
 201    if (iESDfilter)   printf("=  ESD filter                                                    =\n");
 202    if (iJETAN)       printf("=  Jet analysis                                                  =\n");
 203    printf("==================================================================\n");
 204
 205    char *printMask = ":: %20s  %10d\n";
 206    printf(printMask,"Fill AOD",(UInt_t)kFillAOD);
 207    printf(printMask,"Save AOD", (UInt_t)kSaveAOD);
 208    printf(printMask,"MC truth", (UInt_t)kUseMC);
 209    printf(printMask,"KINE filter", (UInt_t)kUseKinefilter);
 210    printf(printMask,"track refs", (UInt_t)kUseTR);
 211    printf(printMask,"tags", (UInt_t)kUseESDTags);
 212    printf(printMask,"AOD tags", (UInt_t)kUseAODTags);
 213    printf(printMask,"debugging", (UInt_t)kUseDebug);
 214    printf(printMask,"PAR files", (UInt_t)kUsePAR);
 215    printf(printMask,"AliEn plugin", (UInt_t)kPluginUse);
 216    printf(printMask,"PWG4 Fragmentation",iPWG4Fragmentation);
 217    printf(printMask,"PWG4 Jet Chem",iPWG4JetChem);
 218    printf(printMask,"PWG4 Jet tasks",iPWG4JetTasks);
 219    printf(printMask,"PWG4 Jet Services",iPWG4JetServices);
 220    printf(printMask,"PWG4 Jet Spectrum",iPWG4JetSpectrum);
 221    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 222    printf(printMask,"PWG4 Leading UE",iPWG4LeadingUE);
 223    printf(printMask,"PWG4 Pt QA MC",iPWG4PtQAMC);
 224    printf(printMask,"PWG4 Pt Spectra",iPWG4PtSpectra);
 225    printf(printMask,"PWG4 Pt QA TPC",iPWG4PtQATPC);
 226    printf(printMask,"PWG4 Cosmics",iPWG4Cosmics);
 227    printf(printMask,"PWG4 QGSep",iPWG4QGSep);
 228    printf(printMask,"PWG4 Minijet",iPWG4Minijet);
 229    printf(printMask,"PWG4 KMeans",iPWG4KMeans);
 230    printf(printMask,"PWG4 Cluster",iPWG4Cluster);
 231    printf(printMask,"PWG4 Part Corr",iPWG4PartCorr);
 232    printf(printMask,"PWG4 Calo QA",iPWG4CaloQA);
 233    printf(printMask,"PWG4 Jet Corr",iPWG4JetCorr);
 234    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 235    printf(printMask,"PWG4 Tagged",iPWG4Tagged);
 236    printf(printMask,"PWG4 omega to 3 pi ",iPWG4omega3pi);
 237    printf(printMask,"PWG4 Gamma Conv",iPWG4GammaConv);
 238    printf(printMask,"PWG4 Calo Conv",iPWG4CaloConv);
 239    printf(printMask,"HighPt FilterMask",kHighPtFilterMask);
 240
 241    //==========================================================================
 242    // Connect to back-end system
 243    if (!Connect(smode)) {
 244       ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
 245       return;
 246    }
 247
 248    // Load common libraries and set include path
 249    if (!LoadCommonLibraries(smode)) {
 250       ::Error("AnalysisTrain", "Could not load common libraries");
 251       return;
 252    }
 253
 254
 255
 256    // Make the analysis manager and connect event handlers
 257    AliAnalysisManager *mgr  = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
 258    if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
 259    if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
 260    mgr->SetNSysInfo(0);
 261    if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
 262    if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
 263    mgr->SetSkipTerminate(kSkipTerminate);
 264
 265    // Load analysis specific libraries
 266    if (!LoadAnalysisLibraries(smode)) {
 267       ::Error("AnalysisTrain", "Could not load analysis libraries");
 268      return;
 269    }
 270
 271    // Create input handler (input container created automatically)
 272    if (iAODanalysis) {
 273    // AOD input handler
 274       AliAODInputHandler *aodH = new AliAODInputHandler();
 275       mgr->SetInputEventHandler(aodH);
 276       //      if (iPWG4JetTasks) aodH->AddFriend(Form("deltas/%s",kDeltaAODJetName.Data()));
 277       //      if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
 278    } else {
 279    // ESD input handler
 280       AliESDInputHandler *esdHandler = new AliESDInputHandler();
 281       if (kUseESDTags) esdHandler->SetReadTags();
 282       esdHandler->SetReadFriends(kFALSE);
 283       mgr->SetInputEventHandler(esdHandler);
 284       //      if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
 285
 286    }
 287
 288    // Monte Carlo handler
 289    if (kUseMC && !iAODanalysis) {
 290       AliMCEventHandler* mcHandler = new AliMCEventHandler();
 291       mgr->SetMCtruthEventHandler(mcHandler);
 292       mcHandler->SetReadTR(kUseTR);
 293    }
 294    // AOD output container, created automatically when setting an AOD handler
 295    if (iAODhandler) {
 296       // AOD output handler
 297       AliAODHandler* aodHandler   = new AliAODHandler();
 298       aodHandler->SetOutputFileName("AliAOD.root");
 299       aodHandler->SetFillAODforRun(kFillAOD);
 300       //
 301       mgr->SetOutputEventHandler(aodHandler);
 302       AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
 303       cout_aod->SetSpecialOutput();
 304    }
 305    // Debugging if needed
 306
 307    if (kUseDebug){
 308      mgr->SetDebugLevel(3);
 309    }
 310    if(kUseSysInfo>0){
 311      mgr->RegisterExtraFile("syswatch.root");
 312      if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 313      kGridMergeExclude += "syswatch.root";
 314    }
 315    else{
 316      AliLog::SetGlobalLogLevel(AliLog::kError);
 317    }
 318
 319
 320    //==========================================================================
 321    // Create the chain. In this example it is created only from ALIEN files but
 322    // can be done to work in batch or grid mode as well.
 323    TChain *chain = CreateChain(smode, plugin_mode);
 324
 325    //==========================================================================
 326    // Load the tasks configuration macros for all wagons. These files are supposed now to be
 327    // in the current workdir, but in AliEn they will be in the file catalog,
 328    // mapped from AliRoot and pecified in the jdl input list.
 329
 330    // For now connection to top input container and common AOD output container
 331    // is done in this macro, but in future these containers will be connected
 332    // from each task configuration macro.
 333
 334    //
 335    // Tender and supplies. Needs to be called for every event.
 336    //
 337    if (useTender) {
 338       gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/TenderSupplies/AddTaskTender.C");
 339       AliAnalysisTaskSE *tender = AddTaskTender(kTRUE);
 340       //      tender->SelectCollisionCandidates();
 341       tender->SetDebugLevel(2);
 342    }
 343
 344
 345
 346    if(iPhysicsSelection && !iAODanalysis){
 347      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
 348      Bool_t rejectBkg = true;
 349      if(kIsPbPb){
 350        rejectBkg = false; // for the moment...
 351      }
 352      AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,rejectBkg);
 353      iPhysicsSelectionFlag = AliVEvent::kMB;
 354    }
 355
 356    if(iCentralitySelection){
 357
 358      // has to run before AOD filter
 359      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCentralitySelection.C");
 360      const char* file1="$ALICE_ROOT/ANALYSIS/macros/AliCentralityBy1D_137161_v5.root";
 361      const char* file2="$ALICE_ROOT/ANALYSIS/macros/AliCentralityBy1D_137366_v3.root";
 362      AliCentralitySelectionTask *taskC = AddTaskCentralitySelection(file1,file2);
 363       if (!taskC) ::Warning("AnalysisTrainPWG4", "AliCentralitySelectionTask cannot run for this train conditions - EXCLUDED");
 364    }
 365
 366    if (iESDfilter && !iAODanalysis) {
 367       //  ESD filter task configuration.
 368       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskESDFilterPWG4Train.C");
 369       AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kUseKinefilter,kUseMuonfilter);
 370       taskesdfilter->SetEnableFillAOD(kFALSE);
 371
 372       if(kIsMC){
 373         mgr->RegisterExtraFile("pyxsec_hists.root");
 374         if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 375         kGridMergeExclude += "pyxsec_hists.root";
 376
 377       }
 378    }
 379
 380    // AOD tags
 381    if (kUseAODTags) {
 382       AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
 383       mgr->AddTask(tagTask);
 384       AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag",  TTree::Class(),
 385                                            AliAnalysisManager::kOutputContainer, "AOD.tag.root");
 386       mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
 387       mgr->ConnectOutput(tagTask, 1, coutTags);
 388    }
 389
 390     // Jet analysis
 391    if (iJETAN) {
 392       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
 393       AliAnalysisTaskJets *taskjets = 0;
 394       if(iJETAN&1){
 395         // default nothing...
 396       }
 397       if(iJETAN&2){
 398         // Set only few jet finders  backgroudn subtraction w an wo
 399
 400         taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1,0);     // high p_T no abackground subtraction
 401         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 402         taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1,1);     // high p_T abackground subtraction
 403         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 404         taskjets = AddTaskJets("AOD","UA1",0.2,kHighPtFilterMask,1,0);     // high p_T no abackground subtraction
 405         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 406         taskjets = AddTaskJets("AOD","UA1",0.2,kHighPtFilterMask,1,1);     // high p_T abackground subtraction
 407         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 408       }
 409       if (!taskjets) ::Warning("AnalysisTrainPWG4", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 410       if(kDeltaAODJetName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJetName.Data());
 411    }
 412
 413    if(iPWG4Cluster){
 414      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
 415      AliAnalysisTaskJetCluster *taskCl = 0;
 416      Float_t fCenUp = 0;
 417      Float_t fCenLo = 0;
 418      if(kIsPbPb&&!kIsMC){
 419        fCenLo = 0;
 420        fCenUp = 80;
 421      }
 422      if(iPWG4Cluster&1){
 423
 424        if(kIsPbPb){
 425          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15); // this one is for the background and random jets
 426          taskCl->SetBackgroundCalc(kTRUE);
 427          taskCl->SetCentralityCut(fCenLo,fCenUp);
 428          taskCl->SetGhostEtamax(0.9);
 429          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 430
 431          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.2,0,1, kDeltaAODJetName.Data(),0.15); // this one is for the background and random jets
 432          taskCl->SetBackgroundCalc(kTRUE);
 433          taskCl->SetCentralityCut(fCenLo,fCenUp);
 434          taskCl->SetGhostEtamax(0.9);
 435        }
 436        else{
 437          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data());
 438          taskCl->SetBackgroundCalc(kTRUE);
 439          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 440        }
 441
 442        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15);
 443        taskCl->SetCentralityCut(fCenLo,fCenUp);
 444        if(kDeltaAODJetName.Length()==0)taskCl->SetJetTriggerPtCut(40.);//
 445        taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 446        kDefaultJetBranch = taskCl->GetJetOutputBranch();
 447
 448
 449        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data(),0.15);
 450        taskCl->SetCentralityCut(fCenLo,fCenUp);
 451        taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 452
 453        if (!taskCl) ::Warning("AnalysisTrainPWG4", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
 454      }
 455    }
 456
 457    if (iDIJETAN) {
 458       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
 459       AliAnalysisTaskDiJets *taskdijets = 0;
 460       if(iDIJETAN&1)taskdijets = AddTaskDiJets();
 461       if (!taskdijets) ::Warning("AnalysisTrainPWG4", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 462       if(iDIJETAN&2){
 463         taskdijets = AddTaskDiJets("jetsAOD_CDF07");
 464         taskdijets = AddTaskDiJets("jetsAOD_DA07");
 465         taskdijets = AddTaskDiJets("jetsAOD_FASTJET07");
 466         taskdijets = AddTaskDiJets("jetsAOD_FASTKT07");
 467         taskdijets = AddTaskDiJets("jetsAOD_SISCONE07");
 468         taskdijets = AddTaskDiJets("jetsAOD_UA107");
 469       }
 470    }
 471
 472    if(iPWG4JetServices){
 473      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
 474      AliAnalysisTaskJetServices *taskjetServ = 0;
 475      taskjetServ = AddTaskJetServices();
 476      if (!taskjetServ) ::Warning("AnalysisTrainPWG4", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
 477      if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
 478      else taskjetServ->SetRunRange(110000,160000);
 479      taskjetServ->SetMCData(kIsMC);
 480      taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
 481      taskjetServ->SetPhysicsSelectionFlag(iPhysicsSelectionFlag); //
 482      taskjetServ->SetDebugLevel(0);
 483      taskjetServ->SetNonStdFile(kDeltaAODJetName.Data());
 484      if(kIsPbPb){
 485        taskjetServ->SetFilterAODCollisions(kTRUE);
 486        taskjetServ->SetZVertexCut(8.);
 487      }
 488      if(iAODanalysis){
 489        taskjetServ->SetAODInput(kTRUE);
 490      }
 491    }
 492
 493    if(iPWG4JetSpectrum){
 494      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
 495      AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
 496      if(iPWG4JetSpectrum&1){
 497        taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),"",kDefaultJetBackgroundBranch.Data(),kHighPtFilterMask,AliVEvent::kMB,0,0);
 498        if(kIsPbPb){
 499          taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),"",kDefaultJetBackgroundBranch.Data(),kHighPtFilterMask,AliVEvent::kMB,0,1);
 500          taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),"",kDefaultJetBackgroundBranch.Data(),kHighPtFilterMask,AliVEvent::kMB,0,2);
 501          taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),"",kDefaultJetBackgroundBranch.Data(),kHighPtFilterMask,AliVEvent::kMB,0,3);
 502          taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),"",kDefaultJetBackgroundBranch.Data(),kHighPtFilterMask,AliVEvent::kMB,0,4);
 503        }
 504      }
 505      if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
 506
 507    }
 508
 509
 510    if(iPWG4Fragmentation){
 511      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragmentationFunction.C");
 512        AliAnalysisTaskFragmentationFunction *taskFrag = 0;
 513      if(kUseAODMC){
 514
 515      }
 516      else{
 517        taskFrag = AddTaskFragmentationFunction(kDefaultJetBranch.Data(),"","","",kHighPtFilterMask);
 518      }
 519
 520      if (!taskFrag) ::Warning("AnalysisTrainPWG4", "AliAnalysisTaskFragmentationFunction cannot run for this train conditions - EXCLUDED");
 521    }
 522
 523
 524    if(iPWG4JetChem){
 525      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
 526      AliAnalysisTask *taskChem = AddTaskJetChem(kHighPtFilterMask);
 527      if (!taskChem) ::Warning("AnalysisTrainPWG4", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
 528    }
 529
 530
 531
 532
 533    if(iPWG4JCORRAN){
 534      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJCORRANTask.C");
 535      AliJCORRANTask* corran = AddTaskJCORRAN(kDeltaAODJCORRANName.Data(),0);
 536      if(!corran)::Warning("AnalysisTrainPWG4Jets", "AliJCORRANTask cannot run for this train conditions - EXCLUDED");
 537      else{
 538        if(kDeltaAODJCORRANName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJCORRANName.Data());
 539      }
 540    }
 541
 542    if(iPWG4LeadingUE){
 543      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskLeadingTrackUE.C");
 544      AliAnalysisTaskLeadingTrackUE *taskLeadingUE = AddTaskLeadingTrackUE(kUseMC);
 545      if (!taskLeadingUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTasLeadingTrackkUE cannot run for this train conditions - EXCLUDED");
 546      //     taskLeadingUE->SetFilterBit(64);
 547    }
 548
 549
 550    if(iPWG4QGSep){
 551      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskQGSep.C");
 552      AliAnalysisTaskQGSep *taskQGSep = AddTaskQGSep(kUseMC,iAODanalysis);
 553      if(!taskQGSep)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQGSep cannot run for this train conditions - EXCLUDED");
 554    }
 555
 556
 557    if(iPWG4Minijet){
 558      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskMinijet.C");
 559      AliAnalysisTaskMinijet *taskMini = AddTaskMinijet(-1,"esd",kUseMC,kGridDataSet);
 560      // if we ha highmult trigger add another task
 561      if(!taskMini)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskMinjet cannot run for this train conditions - EXCLUDED");
 562    }
 563
 564
 565    if(iPWG4PtQAMC){
 566      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
 567      AliPWG4HighPtQAMC *taskQAMC = 0;
 568      if(kUseMC){
 569        if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),0);
 570        if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),1);
 571      }
 572      if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
 573    }
 574
 575    if(iPWG4PtQATPC){
 576      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
 577      AliPWG4HighPtQATPConly *taskQATPC = 0;
 578      if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),1);
 579      if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),2);
 580
 581  if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
 582    }
 583
 584    if(iPWG4Cosmics){
 585      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4CosmicCandidates.C");
 586
 587      AliPWG4CosmicCandidates *taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(0);
 588      taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(1);
 589
 590      if (!taskPWG4CosmicCandidates) ::Warning("AnalysisTrainPWG4Jets", "AddTaskPWG4CosmicCandidates cannot run for this train conditions - EXCLUDED");
 591    }
 592
 593
 594    if(iPWG4PtSpectra){
 595      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
 596      AliPWG4HighPtSpectra *taskPtSpectra = AddTaskPWG4HighPtSpectra(kGridDataSet.Data());
 597      if (!taskPtSpectra) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskPtSpectra cannot run for this train conditions - EXCLUDED");
 598    }
 599    if(iPWG4KMeans){
 600      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
 601      AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
 602      if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
 603    }
 604
 605    if(iPWG4PartCorr){
 606      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
 607      AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
 608      if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
 609      AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
 610      if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
 611      if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data());
 612    }
 613
 614    if(iPWG4CaloQA){
 615      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
 616      AliAnalysisTaskParticleCorrelation *taskcaloQA =  AddTaskCalorimeterQA("ESD",kFALSE,kIsMC,kCaloQAOutputFileName.Data());
 617      if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
 618      //  if(kCaloQAOutputFileName.Length()>0)mgr->RegisterExtraFile(kCaloQAOutputFileName.Data());
 619    }
 620
 621    if(iPWG4JetCorr){
 622      //     using namespace JetCorrelHD;
 623      TString cdir = gSystem->WorkingDirectory();
 624      gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
 625      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
 626      AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
 627      gSystem->ChangeDirectory(cdir);
 628      if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel  cannot run for this train conditions - EXCLUDED");
 629    }
 630
 631    if(iPWG4Tagged){
 632      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
 633      AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
 634      taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
 635      if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons  cannot run for this train conditions - EXCLUDED");
 636    }
 637    if (iPWG4omega3pi) {
 638      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
 639      AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
 640      if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
 641  for these train conditions - EXCLUDED");
 642    }
 643
 644    // PWG4 gamma conversion analysis
 645    if (iPWG4GammaConv) {
 646       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
 647       TString cdir = gSystem->WorkingDirectory();
 648       gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
 649       //      TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
 650       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
 651       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
 652       TString gcArguments = "-run-on-train -run-jet -run-omega-meson -use-own-xyz -run-neutralmeson -no-aod";
 653       //      TString kGCAnalysisCutSelectionId="9003562000100310";
 654       //      TString kGCAnalysisCutSelectionId="9003562000100312";
 655       //      gcArguments.Append(Form(" -set-cut-selection %s ",kGCAnalysisCutSelectionId.Data()));
 656       if(!kIsMC)gcArguments += " -mc-off";
 657       AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
 658       gSystem->ChangeDirectory(cdir);
 659       taskGammaConversion->SelectCollisionCandidates();
 660       if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
 661    }
 662
 663    if (iPWG4CaloConv) {
 664       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCaloConv.C");
 665       AliAnalysisTaskCaloConv * taskCaloConv = AddTaskCaloConv();
 666       if (!taskCaloConv) ::Warning("AnalysisTrainNew", "AliAnalysisTaskCaloConv cannot run for these train conditions - EXCLUDED");
 667    }
 668
 669
 670
 671    //==========================================================================
 672    // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
 673    // Run the analysis
 674    //
 675    if (kPluginUse) {
 676       AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
 677       AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
 678    }
 679
 680    if (mgr->InitAnalysis()) {
 681      mgr->PrintStatus();
 682      // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
 683      if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
 684        TString alien_workdir = gGrid->GetHomeDirectory();
 685        if (iAODanalysis) alien_workdir += "analysisAOD";
 686        else              alien_workdir += "analysisESD";
 687        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
 688        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
 689        printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
 690               alien_workdir.Data(),gridhandler->GetGridOutputDir());
 691
 692        TString dest;
 693        dest = Form("%s/%s/%s.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
 694        if(AliAnalysisAlien::FileExists(dest.Data())){
 695          //      Printf("%s exist on grid removing...",dest.Data());
 696          //      gGrid->Rm(dest.Data());
 697        }
 698        TFile::Cp(Form("file:%s.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
 699
 700
 701        TString dest;
 702        dest = Form("%s/%s/%s_merge.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
 703        if(AliAnalysisAlien::FileExists(dest.Data())){
 704          //      Printf("%s exist on grid removing...",dest.Data());
 705          //      gGrid->Rm(dest.Data());
 706        }
 707        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
 708
 709
 710        dest = Form("%s/rootfiles/STEER/LQ1dRef_v1.root",gGrid->GetHomeDirectory());
 711        if(AliAnalysisAlien::FileExists(dest.Data())){
 712          Printf("%s exist on grid removing...",dest.Data());
 713          gGrid->Rm(dest.Data());
 714        }
 715        TFile::Cp(Form("file:%s/STEER/LQ1dRef_v1.root",
 716                       gSystem->ExpandPathName("$ALICE_ROOT")),Form("alien://%s",dest.Data()));
 717      }
 718      AliLog::SetGlobalLogLevel(AliLog::kError);
 719      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
 720        TFile * fM = TFile::Open("manager_local.root","RECREATE");
 721        mgr->Write();
 722        fM->Close();
 723      }
 724
 725      // grmpf, aliroot error handler overwrites root
 726      gErrorIgnoreLevel = kErrorIgnoreLevel;
 727      if(gErrorIgnoreLevel>3000) AliLog::SetGlobalLogLevel(AliLog::kFatal);
 728      StartAnalysis(smode, chain);
 729      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
 730        for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
 731          mgr->ProfileTask(i);
 732        }
 733      }
 734      if (kSaveTrain && smode=="GRID") {
 735        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
 736        TString alien_workdir = gGrid->GetHomeDirectory();
 737        if (iAODanalysis) alien_workdir += "analysisAOD";
 738        else              alien_workdir += "analysisESD";
 739        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
 740        //     kGridOutdir = gridhandler->GetGridOutputDir();
 741        printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
 742                 alien_workdir.Data());
 743        if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
 744          gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
 745        if (strcmp(plugin_mode, "test"))
 746          TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
 747      }
 748    }
 749 }
 750
 751 //______________________________________________________________________________
 752 void StartAnalysis(const char *mode, TChain *chain) {
 753 // Start analysis.
 754    Int_t imode = -1;
 755    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
 756    if (!strcmp(mode, "LOCAL")) imode = 0;
 757    if (!strcmp(mode, "PROOF")) imode = 1;
 758    if (!strcmp(mode, "GRID"))  imode = 2;
 759    switch (imode) {
 760       case 0:
 761          if (!chain) {
 762             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
 763             return;
 764          }
 765          mgr->StartAnalysis(mode, chain,kNumberOfEvents);
 766          return;
 767       case 1:
 768          if (!kProofDataSet.Length()) {
 769             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
 770             return;
 771          }
 772          mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
 773          return;
 774       case 2:
 775          if (kPluginUse) {
 776             if (!mgr->GetGridHandler()) {
 777                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
 778                return;
 779             }
 780             mgr->StartAnalysis("grid",chain,kNumberOfEvents);
 781          } else {
 782             if (!chain) {
 783                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
 784                return;
 785             }
 786             mgr->StartAnalysis(mode, chain);
 787             mgr->StartAnalysis(mode, chain,kNumberOfEvents);
 788          }
 789          return;
 790    }
 791 }
 792
 793 //______________________________________________________________________________
 794 void CheckModuleFlags(const char *mode) {
 795 // Checks selected modules and insure compatibility
 796    Int_t imode = -1;
 797    if (!strcmp(mode, "LOCAL")) imode = 0;
 798    if (!strcmp(mode, "PROOF")) imode = 1;
 799    if (!strcmp(mode, "GRID"))  imode = 2;
 800
 801
 802    if (kUseCPAR) {
 803      kPluginAliRootVersion    = ""; // NO aliroot if we use CPAR
 804    }
 805
 806    if (imode==1) {
 807       if (!kUsePAR) {
 808          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
 809          kUsePAR = kTRUE;
 810       }
 811    }
 812    if (imode != 2) {
 813       ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
 814       kPluginUse = kFALSE;
 815    }
 816
 817
 818    if(!kIsMC){
 819      // switch off anthin related to MC
 820      kUseMC = 0;
 821      kUseAODMC = 0;
 822      kUseTR = kFALSE;
 823    }
 824
 825    // Decide if we have PbPb
 826    if(kGridDataSet.CompareTo("LHC10h")==0||kGridDataSet.Contains("LHC10h")) {
 827      Printf("Using settings for Pb+Pb");
 828      kIsPbPb = true;
 829    }
 830
 831
 832
 833    if (iAODanalysis) {
 834    // AOD analysis
 835       if (kUseMC)
 836          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
 837       if (kUseAODTags)
 838          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
 839       kUseMC = kFALSE;
 840       kUseTR = kFALSE;
 841       kUseAODTags = kFALSE;
 842       if (iESDfilter)
 843          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
 844       iESDfilter   = 0;
 845       if (iPhysicsSelection)
 846          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
 847       iPhysicsSelection   = 0;
 848       if (!iAODhandler) {
 849          if (iJETAN)
 850             ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
 851          iJETAN = 0;
 852          iDIJETAN = 0;
 853       }
 854       // Disable tasks that do not work yet on AOD data
 855       if(iPWG4JCORRAN)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 JCORRAN disabled in analysis on AOD's");
 856       iPWG4JCORRAN = 0;
 857       if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
 858       iPWG4PtQAMC        = 0;
 859       if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
 860       iPWG4PtQATPC        = 0;
 861       if( iPWG4Cosmics)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Comics disabled in analysis on AOD's");
 862       iPWG4Cosmics        = 0;
 863
 864       if( iPWG4PtSpectra)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
 865       iPWG4PtSpectra     = 0;
 866       if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
 867       iPWG4KMeans       = 0;
 868       if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
 869       iPWG4JetCorr = 0;
 870       if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
 871       iPWG4PartCorr = 0;
 872       if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
 873       iPWG4CaloQA = 0;
 874       if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
 875       iPWG4Tagged = 0;
 876       if (iPWG4omega3pi)
 877         ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
 878       iPWG4omega3pi = 0;
 879       if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
 880       iPWG4GammaConv = 0;
 881       iCentralitySelection = 0;
 882    } else {
 883    // ESD analysis
 884
 885      if(kIsPbPb){
 886        iCentralitySelection = 1;
 887      }
 888
 889      if (!kUseMC){
 890        kUseTR = kFALSE;
 891
 892        if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
 893        kUseKinefilter = kFALSE;
 894        if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
 895        iPWG4PtQAMC        = 0;
 896      }
 897      if (!kUseTR) {
 898        if(iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "iPWG4QATPCMC disabled if not reading track references");
 899        iPWG4PtQAMC        = 0;
 900      }
 901      if (iJETAN){
 902        iESDfilter=1;
 903      }
 904       if (!iESDfilter){
 905         kUseKinefilter = kFALSE;
 906         kUseMuonfilter = kFALSE;
 907       }
 908       if(!iJETAN){
 909         iPWG4JetSpectrum = iPWG4QGSep = iDIJETAN = 0;
 910       }
 911    }
 912    iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4LeadingUE||iPWG4PtQAMC||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4Cosmics||iPWG4QGSep||iPWG4JetChem||iPWG4Minijet||iPWG4Fragmentation;
 913    iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
 914    iPWG4GammaConvLib = iPWG4GammaConv||iPWG4CaloConv;
 915
 916
 917    iEMCUtilLibs = iPWG4PartCorrLibs||iPWG4JCORRAN||iPWG4GammaConvLib;
 918    iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
 919
 920    if (iESDfilter) {iAODhandler=1;}
 921    if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
 922    if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
 923
 924
 925
 926 }
 927
 928 //______________________________________________________________________________
 929 Bool_t Connect(const char *mode) {
 930 // Connect <username> to the back-end system.
 931    Int_t imode = -1;
 932    if (!strcmp(mode, "LOCAL")) imode = 0;
 933    if (!strcmp(mode, "PROOF")) imode = 1;
 934    if (!strcmp(mode, "GRID"))  imode = 2;
 935    TString username = gSystem->Getenv("alien_API_USER");
 936    switch (imode) {
 937       case 0:
 938          break;
 939       case 1:
 940          if  (!username.Length()) {
 941             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
 942                            1. Have called: alien-token-init <username>\n \
 943                            2. Have called: >source /tmp/gclient_env_$UID");
 944             return kFALSE;
 945          }
 946          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
 947                 username.Data(), kProofCluster.Data());
 948          gEnv->SetValue("XSec.GSI.DelegProxy", "2");
 949 //         TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
 950          TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
 951          if (!gProof) {
 952             if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
 953                ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
 954             return kFALSE;
 955          }
 956          if(kProofClearPackages)gProof->ClearPackages();
 957
 958          if(kProofSaveToAlien){
 959            TGrid::Connect("alien://");
 960            if (gGrid) {
 961              TString homedir = gGrid->GetHomeDirectory();
 962              TString workdir = homedir + kTrainName;
 963              if (!gGrid->Cd(workdir)) {
 964                gGrid->Cd(homedir);
 965                if (gGrid->Mkdir(workdir)) {
 966                  gGrid->Cd(kTrainName);
 967                  ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
 968                }
 969              }
 970              gGrid->Mkdir("proof_output");
 971              gGrid->Cd("proof_output");
 972              kProofOutdir = Form("alien://%s", gGrid->Pwd());
 973            }
 974          }
 975          break;
 976       case 2:
 977          if  (!username.Length()) {
 978             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
 979                            1. Have called: alien-token-init <username>\n \
 980                            2. Have called: >source /tmp/gclient_env_$UID");
 981             return kFALSE;
 982          }
 983          if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
 984             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
 985                            "When using the AliEn plugin it is preferable to define the \
 986                            variable alien_CLOSE_SE in your environment.");
 987             return kFALSE;
 988          }
 989          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
 990                 username.Data());
 991          TGrid::Connect("alien://");
 992          if (!gGrid || !gGrid->IsConnected()) return kFALSE;
 993          break;
 994       default:
 995          ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
 996          return kFALSE;
 997    }
 998    ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
 999    return kTRUE;
1000 }
1001
1002 //______________________________________________________________________________
1003 Bool_t LoadCommonLibraries(const char *mode)
1004 {
1005 // Load common analysis libraries.
1006    Int_t imode = -1;
1007    if (!strcmp(mode, "LOCAL")) imode = 0;
1008    if (!strcmp(mode, "PROOF")) imode = 1;
1009    if (!strcmp(mode, "GRID"))  imode = 2;
1010    if (!gSystem->Getenv("ALICE_ROOT")) {
1011       ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Analysis train requires that ALICE_ROOT is set to pick up Configurations");
1012       return kFALSE;
1013    }
1014    Bool_t success = kTRUE;
1015    // ROOT libraries
1016    gSystem->Load("libTree.so");
1017    gSystem->Load("libGeom.so");
1018    gSystem->Load("libVMC.so");
1019    gSystem->Load("libPhysics.so");
1020
1021    // Load framework classes. Par option ignored here.
1022    switch (imode) {
1023       case 0:
1024       case 2:
1025          if (kUseCPAR) {
1026             success &= LoadLibrary("STEERBase", mode, kTRUE);
1027             success &= LoadLibrary("ESD", mode, kTRUE);
1028             success &= LoadLibrary("AOD", mode, kTRUE);
1029             success &= LoadLibrary("ANALYSIS", mode, kTRUE);
1030             success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
1031             success &= LoadLibrary("EventMixing", mode,kTRUE);
1032             success &= LoadLibrary("CORRFW", mode, kTRUE);
1033          } else {
1034             success &= LoadLibrary("libSTEERBase.so", mode);
1035             success &= LoadLibrary("libESD.so", mode);
1036             success &= LoadLibrary("libAOD.so", mode);
1037             success &= LoadLibrary("libANALYSIS.so", mode);
1038             success &= LoadLibrary("libANALYSISalice.so", mode);
1039             success &= LoadLibrary("libEventMixing.so", mode);
1040             success &= LoadLibrary("libCORRFW.so", mode);
1041             gROOT->ProcessLine(".include $ALICE_ROOT/include");
1042          }
1043          break;
1044       case 1:
1045          Int_t ires = -1;
1046          if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
1047          if (ires < 0) {
1048             success &= LoadLibrary("STEERBase", mode);
1049             success &= LoadLibrary("ESD", mode);
1050             success &= LoadLibrary("AOD", mode);
1051             success &= LoadLibrary("ANALYSIS", mode);
1052             success &= LoadLibrary("ANALYSISalice", mode);
1053             success &= LoadLibrary("EventMixing", mode);
1054             success &= LoadLibrary("CORRFW", mode);
1055          } else {
1056             ires = gProof->EnablePackage(kProofAFversion);
1057             if (ires<0) success = kFALSE;
1058             success &= LoadLibrary("CORRFW", mode);
1059          }
1060          break;
1061       default:
1062          ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
1063          return kFALSE;
1064    }
1065    if (success) {
1066       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    SUCCESS");
1067       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
1068               gSystem->GetIncludePath());
1069    } else {
1070       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    FAILED");
1071    }
1072
1073    return success;
1074 }
1075
1076 //______________________________________________________________________________
1077 Bool_t LoadAnalysisLibraries(const char *mode)
1078 {
1079 // Load common analysis libraries.
1080   Bool_t success = kTRUE;
1081   if (useTender) {
1082       if (!LoadLibrary("TENDER", mode, kTRUE) ||
1083           !LoadLibrary("TENDERSupplies", mode, kTRUE)) return kFALSE;
1084    }
1085    if (iESDfilter) {
1086      /*
1087       if (!LoadLibrary("PWG3base", mode, kTRUE) ||
1088           !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
1089      */
1090    }
1091    // JETAN
1092    if (iJETANLib) {
1093      // this part needs some rework in case we do not need the fastjed finders for processing
1094      if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
1095      if (!strcmp(mode, "PROOF")){
1096        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
1097        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
1098        // problem when loading siscone copiled with different gcc version??
1099        // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
1100        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
1101      }
1102      if(!kUsePAR){
1103        if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
1104        if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
1105        if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
1106        if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
1107      }
1108      else{
1109        // par files plus FASTJET needs some extra work... need to change
1110        // the loading sequence in the auto generated .C file
1111        if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
1112        if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
1113        if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
1114        if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
1115      }
1116      if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
1117    }
1118    if(iPWG4JetTasks){
1119      if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
1120    }
1121
1122    if(iEMCUtilLibs){
1123      if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
1124          !LoadLibrary("PHOSUtils", mode, kTRUE)) return kFALSE;
1125    }
1126
1127    if (iPWG4PartCorrLibs) {
1128       if (!LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
1129           !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
1130    }
1131    if(iPWG4JCORRAN){
1132      // PWG4 particle correlations
1133      if(!LoadLibrary("PWG4JCORRAN",mode,kTRUE))return kFALSE;
1134    }
1135    if (iPWG4JetCorr) {
1136      if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
1137    }
1138    if (iPWG4omega3pi) {
1139      if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
1140    }
1141    if (iPWG4GammaConvLib) {
1142       if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
1143    }
1144
1145    ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries:   SUCCESS");
1146    return kTRUE;
1147 }
1148
1149 //______________________________________________________________________________
1150 Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
1151 {
1152 // Load a module library in a given mode. Reports success.
1153    Int_t imode = -1;
1154    Int_t result;
1155    TString smodule(module);
1156    if (!strcmp(mode, "LOCAL")) imode = 0;
1157    if (!strcmp(mode, "PROOF")) imode = 1;
1158    if (!strcmp(mode, "GRID"))  imode = 2;
1159    TString mod(module);
1160    if (!mod.Length()) {
1161       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1162       return kFALSE;
1163    }
1164    // If a library is specified, just load it
1165    if (smodule.EndsWith(".so")) {
1166       mod.Remove(mod.Index(".so"));
1167       result = gSystem->Load(mod);
1168       if (result < 0) {
1169          ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1170          return kFALSE;
1171       }
1172       if (rec) anaLibs += Form("%s.so ",mod.Data());
1173       if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
1174       return kTRUE;
1175    }
1176    // Check if the library is already loaded
1177    if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1178       return kTRUE;
1179    switch (imode) {
1180       case 0:
1181       case 2:
1182          if (kUsePAR) {
1183             result = SetupPar(module);
1184             if (rec) anaPars += Form("%s.par ", module);
1185          } else {
1186             result = gSystem->Load(Form("lib%s.so", module));
1187             if (rec) anaLibs += Form("lib%s.so ", module);
1188          }
1189          break;
1190       case 1:
1191         if(!gSystem->AccessPathName(module)){
1192           ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1193           gSystem->Exec(Form("rm -rf %s",module));
1194         }
1195          result = gProof->UploadPackage(module);
1196          if (result<0) {
1197             result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1198             if (result<0) {
1199                ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1200                return kFALSE;
1201             }
1202          }
1203          result = gProof->EnablePackage(module);
1204          break;
1205       default:
1206          return kFALSE;
1207    }
1208    if (result < 0) {
1209       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1210       return kFALSE;
1211    }
1212    return kTRUE;
1213 }
1214
1215
1216
1217 //______________________________________________________________________________
1218 Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1219 {
1220 // Load a module library in a given mode. Reports success.
1221    Int_t imode = -1;
1222    Int_t result = -1;
1223    if (!strcmp(mode, "LOCAL")) imode = 0;
1224    if (!strcmp(mode, "PROOF")) imode = 1;
1225    if (!strcmp(mode, "GRID"))  imode = 2;
1226    TString ssource(source);
1227    TString basename = gSystem->BaseName(ssource.Data());
1228    if (!ssource.Length()) {
1229       ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1230       return kFALSE;
1231    }
1232    // we have a source code so compile it
1233    if (ssource.EndsWith(".cxx")) {
1234      // need to copy it here other wise the path is also used on grid...
1235      ssource.Remove(ssource.Index(".cxx"));
1236      basename.Remove(basename.Index(".cxx"));
1237      Printf("LoadSources:: Copying...  path %s{cxx,h}",ssource.Data());
1238      gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1239      gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1240      // Path to code
1241      // only needed for local compilation, in grid and proof mode
1242      // the task headers are uploaded
1243      //     path.Remove(path.Index(gSystem->BaseName(path.Data())));
1244      // Printf("LoadSources:: Including path %s",path.Data());
1245      //  if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1246      Printf("LoadSources:: Loading...  path %s",basename.Data());
1247      switch (imode) {
1248      case 0:
1249        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1250        break;
1251      case 1:
1252        result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
1253        break;
1254      case 2:
1255        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1256        if (rec){
1257          // what we want to compile
1258          anaSources += Form("%s.cxx ",basename.Data());
1259          // what we need as input...
1260          anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1261        }
1262        break;
1263      default:
1264        return kFALSE;
1265      }
1266    }
1267    if (result < 0) {
1268       ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1269       return kFALSE;
1270    }
1271    return kTRUE;
1272 }
1273
1274
1275 //______________________________________________________________________________
1276 TChain *CreateChain(const char *mode, const char *plugin_mode)
1277 {
1278 // Create the input chain
1279    Int_t imode = -1;
1280    if (!strcmp(mode, "LOCAL")) imode = 0;
1281    if (!strcmp(mode, "PROOF")) imode = 1;
1282    if (!strcmp(mode, "GRID"))  imode = 2;
1283    TChain *chain = NULL;
1284    // Local chain
1285    switch (imode) {
1286       case 0:
1287          if (iAODanalysis) {
1288             if (!kLocalXMLDataset.Length()) {
1289                // Local AOD
1290                chain = new TChain("aodTree");
1291                TString line;
1292                ifstream in;
1293                in.open(kLocalDataList.Data());
1294                while (in.good()) {
1295                  in >> line;
1296                  if (line.Length() == 0) continue;
1297                  // cout << " line = " << line << endl;
1298                  chain->Add(line.Data());
1299                }
1300             } else {
1301                // Interactive AOD
1302                chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
1303             }
1304          } else {
1305            if (!kLocalXMLDataset.Length()) {
1306              // Local ESD
1307              chain = new TChain("esdTree");
1308              TString line;
1309              ifstream in;
1310              in.open(kLocalDataList.Data());
1311              while (in.good()) {
1312                in >> line;
1313                if (line.Length() == 0) continue;
1314                cout << " line = " << line << endl;
1315                chain->Add(line.Data());
1316              }
1317            } else {
1318              // Interactive ESD
1319                chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
1320            }
1321          }
1322          break;
1323       case 1:
1324          break;
1325       case 2:
1326          if (kPluginUse) {
1327 //            AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1328 //            AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1329          } else {
1330             TString           treeName = "esdTree";
1331             if (iAODanalysis) treeName = "aodTree";
1332             chain = CreateChainSingle("wn.xml", treeName);
1333          }
1334          break;
1335       default:
1336    }
1337    if (chain && chain->GetNtrees()) return chain;
1338    return NULL;
1339 }
1340
1341 //______________________________________________________________________________
1342 TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
1343 {
1344    printf("*******************************\n");
1345    printf("*** Getting the ESD Chain   ***\n");
1346    printf("*******************************\n");
1347    TAlienCollection * myCollection  = TAlienCollection::Open(xmlfile);
1348
1349    if (!myCollection) {
1350       ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
1351       return NULL ;
1352    }
1353
1354    TChain* chain = new TChain(treeName);
1355    myCollection->Reset() ;
1356    while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
1357    chain->ls();
1358    return chain;
1359 }
1360
1361 //______________________________________________________________________________
1362 Int_t SetupPar(char* pararchivename)
1363 {
1364    if (!pararchivename || !strlen(pararchivename)) return -1;
1365    char processline[1024];
1366    if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
1367       if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
1368          ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
1369         TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
1370                   Form("%s.par",pararchivename));
1371       } else {
1372          ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
1373          return -1;
1374       }
1375    }
1376    if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
1377    gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
1378
1379    TString ocwd = gSystem->WorkingDirectory();
1380    if (!gSystem->ChangeDirectory(pararchivename)) return -1;
1381
1382    // check for BUILD.sh and execute
1383    if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
1384       printf("*******************************\n");
1385       printf("*** Building PAR archive    ***\n");
1386       printf("*******************************\n");
1387       if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
1388          Error("runProcess","Cannot Build the PAR Archive! - Abort!");
1389          return -1;
1390       }
1391    }
1392
1393         // check for SETUP.C and execute
1394         if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
1395             printf("*******************************\n");
1396             printf("*** Setup PAR archive       ***\n");
1397             printf("*******************************\n");
1398             gROOT->Macro("PROOF-INF/SETUP.C");
1399         }
1400         if (!gSystem->ChangeDirectory(ocwd.Data())) return -1;
1401    return 0;
1402 }
1403
1404 //______________________________________________________________________________
1405 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
1406 {
1407 // Check if user has a valid token, otherwise make one. This has limitations.
1408 // One can always follow the standard procedure of calling alien-token-init then
1409 //   source /tmp/gclient_env_$UID in the current shell.
1410 //   if (!AliAnalysisGrid::CreateToken()) return NULL;
1411    AliAnalysisAlien *plugin = new AliAnalysisAlien();
1412 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
1413    plugin->SetRunMode(plugin_mode);
1414    if (kPluginUseProductionMode) plugin->SetProductionMode();
1415    plugin->SetJobTag(kJobTag);
1416    plugin->SetNtestFiles(2);
1417 //   plugin->SetPreferedSE("ALICE::NIHAM::File");
1418 // Set versions of used packages
1419    plugin->SetAPIVersion("V1.1x");
1420    //   plugin->SetAPIVersion("V1.0x");
1421 //   plugin->SetAPIVersion("V2.4");
1422    plugin->SetROOTVersion(kPluginRootVersion);
1423    plugin->SetAliROOTVersion(kPluginAliRootVersion);
1424 // Declare input data to be processed.
1425 // Method 1: Create automatically XML collections using alien 'find' command.
1426 // Define production directory LFN
1427    plugin->SetGridDataDir(kGridDataDir.Data());
1428 // Set data search pattern
1429    if (iAODanalysis) plugin->SetDataPattern(" *AliAOD.root");
1430    //   else              plugin->SetDataPattern(Form(" %s/*/*ESD.tag.root",kGridPassPattern.Data()));
1431    else {
1432        plugin->SetDataPattern(Form(" %s/*/*AliESDs.root",kGridPassPattern.Data()));
1433    }
1434 // ...then add run numbers to be considered
1435    plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
1436    plugin->SetRunPrefix("000");
1437    /*
1438    for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
1439      Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
1440      plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
1441    }
1442    */
1443
1444    if(kGridLocalRunList.Length()>0){
1445      ifstream in1;
1446      in1.open(kGridLocalRunList.Data());
1447      int iRun;
1448      int icount = 0;
1449      /*
1450      char c;
1451      char cLine[250];
1452      while(!in1.eof()){
1453        c = in1.get();
1454        if ( (c >= '0') && (c <= '9') )
1455          {
1456            in1.putback (c);
1457            in1>>iRun;
1458            Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1459            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1460        }
1461      else
1462        {
1463          in1.putback (c);
1464          in1.getline(cLine,250);
1465
1466        }
1467      }
1468      */
1469
1470      Int_t nRun = 0;
1471
1472      // just use run numbers, negatives will be excluded
1473      while(in1>>iRun){
1474        if(iRun>=0){
1475          if(iRun>=0&&nRun>=kGridOffsetRunFromList&&(nRun<kGridMaxRunsFromList)){
1476            Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1477            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1478
1479          }
1480          else{
1481            Printf("AnalysisTrainPWG4Jets Skipping run number from File %d", iRun);
1482          }
1483          nRun++;
1484        }
1485        else{
1486          Printf("AnalysisTrainPWG4Jets Skipping run number from File %d", iRun);
1487        }
1488      }
1489    }
1490
1491 // Method 2: Declare existing data files (raw collections, xml collections, root file)
1492 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
1493 // XML collections added via this method can be combined with the first method if
1494 // the content is compatible (using or not tags)
1495 //   plugin->AddDataFile("tag.xml");
1496 //   plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
1497 // Define alien work directory where all files will be copied. Relative to alien $HOME.
1498    TString alien_workdir = "";
1499
1500    if (iAODanalysis)  alien_workdir += "analysisAOD";
1501    else               alien_workdir += "analysisESD";
1502    if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
1503    plugin->SetGridWorkingDir(alien_workdir.Data());
1504
1505    // Declare alien output directory. Relative to working directory.
1506    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1507    plugin->SetGridOutputDir(kGridOutdir);
1508
1509    // Add external packages
1510    if (iJETAN||iDIJETAN) {
1511       plugin->AddExternalPackage("boost::v1_43_0");
1512       plugin->AddExternalPackage("cgal::v3.6");
1513       plugin->AddExternalPackage("fastjet::v2.4.2");
1514    }
1515
1516
1517    // set extra libs before par file compilation
1518    anaLibs += kGridExtraFiles;
1519    anaLibs     = anaLibs.Strip();
1520    Printf("anaLibs %s",anaLibs.Data());
1521    Printf("anaLibsExtra %s",anaLibsExtra.Data());
1522
1523    if (anaLibs.Length())          plugin->SetAdditionalLibs(anaLibs.Data());
1524    if (anaLibsExtra.Length())     plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
1525
1526    TString ana_sources = "";
1527    TString ana_add = "";
1528    if (kUsePAR && anaPars.Length()) {
1529       printf("%s\n", anaPars.Data());
1530       TObjArray *arr;
1531       TObjString *objstr;
1532       arr = anaPars.Tokenize(" ");
1533       TIter next(arr);
1534       while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
1535       delete arr;
1536    }
1537
1538 // Declare the analysis source files names separated by blancs. To be compiled runtime
1539 // using ACLiC on the worker nodes.
1540    ana_sources = anaSources.Strip();
1541 // Declare all libraries (other than the default ones for the framework. These will be
1542 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
1543
1544    if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
1545    plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
1546    // Declare the output file names separated by blancs.
1547    // (can be like: file.root or file.root@ALICE::Niham::File)
1548    plugin->SetMergeExcludes(kGridMergeExclude);
1549    plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
1550    plugin->SetNrunsPerMaster(kGridRunsPerMaster);
1551    plugin->SetMergeViaJDL(kPluginMergeViaJDL);
1552    // Use fastread option
1553    plugin->SetFastReadOption(kPluginFastReadOption);
1554    // UseOverwrite mode
1555    plugin->SetOverwriteMode(kPluginOverwriteMode);
1556    // Optionally define the files to be archived.
1557    //   plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
1558    plugin->SetOutputToRunNo(kPluginOutputToRunNumber);     // write the output to subdirs named after run number
1559
1560    // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
1561    plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
1562    // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
1563    plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
1564    // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
1565    //   plugin->SetMaxInitFailed(5);
1566    // Optionally resubmit threshold.
1567    // plugin->SetMasterResubmitThreshold(90);
1568    // Optionally set time to live (default 30000 sec)
1569    plugin->SetTTL(54000); // 15h...
1570    // Optionally set input format (default xml-single)
1571    plugin->SetInputFormat("xml-single");
1572    // Optionally modify the name of the generated JDL (default analysis.jdl)
1573    plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
1574    // Optionally modify the executable name (default analysis.sh)
1575    plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
1576    // Optionally modify job price (default 1)
1577    plugin->SetPrice(1);
1578    // Optionally modify split mode (default 'se')
1579    plugin->SetSplitMode("se");
1580    return plugin;
1581 }
1582 //______________________________________________________________________________
1583 Bool_t LoadConfig(const char *filename)
1584 {
1585 // Read train configuration from file
1586    if (gSystem->AccessPathName(filename)) {
1587       ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
1588       return kFALSE;
1589    }
1590    gROOT->ProcessLine(Form(".x %s", filename));
1591    ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
1592    return kTRUE;
1593 }