PWG4/macros/AnalysisTrainPWG4Jets.C

   1 //===================== ANALYSIS TRAIN =========================================
   2 // To use: copy this macro to your work directory, modify the global part to match
   3 // your needs, then run root.
   4 //    root[0] .L AnalysisTrain.C
   5 // Grid full mode as below (other modes: test, offline, submit, terminate)
   6 //    root[1] AnalysisTrainPWG-244Jets("grid", "full")
   7 // CAF mode (requires root v5-23-02 + aliroot v4-16-Rev08)
   8 //    root[2] AnalysisTrainPWG4Jets("proof")
   9 // Local mode requires AliESds.root or AliAOD.root in ./data directory
  10 //    root[3] AnalysisTrainPWG4Jets("local")
  11 // In proof and grid modes, a token is needed and sourcing the produced environment file.
  12 //
  13 // If 'saveTrain' flag is set, the train will generate a directory name and run
  14 // in this directory. A configuration file 'ConfigTrain.C' will be generated.
  15 // One can replay at any time the train via:
  16 //    root[1] AnalysisTrainPWG4Jets(ana_mode, plugin_mode, "train_default_<date>/ConfigTrain.C")
  17
  18 // For Usage with fastjet run in "offline" first and then "submit"
  19 // jdl and analysismacro are automatically patched after "offline" mode
  20
  21 // =============================================================================
  22 // ### General Steering variables
  23 // =============================================================================
  24 //== general setup variables
  25 TString     kTrainName         = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
  26 TString     kJobTag            = "PWG4 Jet Tasks analysis train configured"; // *CHANGE ME*
  27
  28 // Usage of par files ONLY in grid mode and ONLY if the code is not available
  29 // in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
  30 // To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
  31 // AliRoot.
  32 Bool_t      kUsePAR             = kFALSE;  // use par files for extra libs
  33 Bool_t      kUseCPAR            = kFALSE;  // use par files for common libs
  34 Bool_t      kFillAOD = kTRUE;  // switch of AOD filling for on the fly analysis
  35 Bool_t      kFilterAOD = kTRUE;
  36 Float_t     kJetTriggerPtCut = 20; // pT for jet trigger in case of iFilter==2
  37 Int_t       kSaveAOD = 8;        // Bit switch 1 = Full AOD 2 = Jet AOD , 4 = PartCorr, 8 = JCORRAN
  38 //== general input and output variables
  39
  40 Int_t       iAODanalysis       = 1;      // Analysis on input AOD's
  41 Int_t       iFilterAnalysis       = 0;      // Analysis on input AOD's
  42 Int_t       iAODhandler        = 1;      // Analysis produces an AOD or dAOD's
  43 Int_t       iCentralitySelection  = 0;      // Use the centrality
  44 Int_t       iESDfilter         = 0;      // ESD to AOD filter (barrel + muon tracks)
  45 Int_t       iPhysicsSelection  = 1;      // ESD to AOD filter (barrel + muon tracks)
  46 UInt_t      iPhysicsSelectionFlag = 1; // set by pyshics selection and passed to the task, kMB, kUserDefined etc
  47 Bool_t      useTender           = kFALSE; // use tender wagon
  48 Bool_t      kUseKinefilter     = kFALSE; // use Kinematics filter
  49 Bool_t      kUseMuonfilter     = kFALSE; // use Kinematics filter
  50 TString     kCommonOutputFileName = "PWG4_JetTasksOutput.root";
  51 TString     kCaloQAOutputFileName = "PWG4_CaloQAOutput.root";
  52
  53
  54 //== general process variables
  55
  56 // ### Other flags to steer the analysis
  57 //==============================================================================
  58 Bool_t      kSkipTerminate      = kTRUE; // Do not call Teminate
  59 Bool_t      kUseDate            = kFALSE; // use date in train name
  60 Bool_t      kUseDebug           = kTRUE; // activate debugging
  61 Int_t         kErrorIgnoreLevel = -1; // takes the errror print level from .rootrc
  62 // From TError.h:
  63 // const Int_t kUnset    =  -1;
  64 // const Int_t kPrint    =   0;
  65 // const Int_t kInfo     =   1000;
  66 // const Int_t kWarning  =   2000;
  67 // const Int_t kError    =   3000;
  68 // const Int_t kBreak    =   4000;
  69 // const Int_t kSysError =   5000;
  70 // const Int_t kFatal    =   6000;
  71 Int_t         kUseSysInfo         = 0; // activate debugging
  72 Long64_t    kNumberOfEvents     = 1234567890; // number of events to process from the chain
  73 Bool_t      kUseMC              = kTRUE;  // use MC info
  74 Bool_t      kIsMC               = kTRUE;  // is MC info, if false it overwrites Use(AOD)MC
  75 Bool_t      kUseAODMC           = kTRUE;  // use MC infA
  76 Bool_t      kUseESDTags         = kFALSE; // use ESD tags for selection
  77 Bool_t      kUseTR              = kFALSE;  // use track references
  78 Bool_t      kUseAODTags         = kFALSE;  // use AOD tags
  79 Bool_t      kSaveTrain          = kFALSE;  // save train configuration as:
  80 Bool_t      kIsPbPb             = kFALSE;  // Pb+Pb
  81
  82
  83 // ### Analysis modules to be included. Some may not be yet fully implemented.
  84 //==============================================================================
  85 Int_t       iJETAN             = 1;      // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
  86 Int_t       iJETSUBTRACT        = 1;      // Jet background subtration
  87 TList       kJetListSpectrum;             // list of jets contains TObjString of possible jet finder names
  88 TExMap      kJetMapSpectrum;             // Maps the jet finder pairs to be used in the spectrum task second number negative no pair other wise (j1+1) + (1000 * (j2+1)) +10000 * (j3+1)
  89 TExMap      kJetBackMapSpectrum;             // Maps the jet finder pairs with the background branch used, just for countint of trackrefs
  90 Int_t       kJetMapOffset[3] = {10000,100,1};
  91 TString     kDefaultJetBranch     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
  92 TString     kDefaultJetBackgroundBranch            = "";      // is currently set when filled (jet clsuters
  93 TString     kDefaultJetBackgroundBranchCut1        = "";      // is currently set when filled (jet clsuters
  94 TString     kDefaultJetBackgroundBranchCut2        = "";      // is currently set when filled (jet clsuters
  95 TString     kDefaultJetBackgroundBranch_extra     = "";      // is currently set when filled (jet clsuters)
  96 TString     kJetSubtractBranches     = "";      // is currently set when filled (jet clsuters
  97 TString     kJetSubtractBranchesCut1     = "";      // is currently set when filled (jet clsuters
  98 TString     kJetSubtractBranchesCut2     = "";      // is currently set when filled (jet clsuters
  99 TString     kJetSubtractBranches_extra     = "";      // is currently set when filled (jet clsuters
 100
 101 TString     kDefaultJetBranchMC     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
 102 TString     kDefaultJetBackgroundBranchMC     = "";      // is currently set when filled (jet clsuters
 103 TString     kDefaultJetBranchMC2     = "";      // is currently set when filled (iJETAN or clusters) or from config macro
 104 TString     kDefaultJetBackgroundBranchMC2     = "";      // is currently set when filled (jet clsuters
 105 TString     kJetSubtractMask1 = "B0";
 106 TString     kJetSubtractMask2 = "B%d";
 107 Int_t       iDIJETAN           = 1;
 108 Int_t       iJETANLib          = 1;
 109 Int_t       iPWG1QASym         = 0;      // Eva's QA task compiled on the fly...
 110 Int_t       iPWG4FastEmbedding = 0;      // Generate non-standard AOD for embedding
 111 Int_t       iPWG4JetTasks      = 0;      // all jet tasks flag for lib laoding
 112 Int_t       iPWG4JetServices   = 0;      // jet spectrum analysis
 113 Int_t       iPWG4JetSpectrum   = 0;      // jet spectrum analysis
 114 Int_t       iPWG4JetResponse   = 0;      // jet response matrix
 115 Int_t       iPWG4JCORRAN       = 0;      // JCORRAN module
 116 Int_t       iPWG4UE            = 0;      // Underlying Event analysis
 117 Int_t       iPWG4LeadingUE     = 0;      // Underlying Event analysis
 118 Int_t       iPWG4CorrectionsUE = 0;      // Underlying Event analysis
 119 Int_t       iPWG4TmpSourceSara = 0;      // Underlying Event analysis not in svn
 120 Int_t       iPWG4Fragmentation = 1;      // Official Fragmentation
 121 Int_t       iPWG4JetChem       = 0;      // Jet chemistry
 122 Int_t       iPWG4PtQAMC        = 0;      // Marta's QA tasks
 123 Int_t       iPWG4PtTrackQA     = 0;      // Marta's QA tasks
 124 Int_t       iPWG4PtSpectra     = 0;      // Marta's QA tasks
 125 Int_t       iPWG4PtQATPC       = 0;      // Marta's QA tasks
 126 Int_t       iPWG4Cosmics     = 0;      // Marta's Cosmics Taks
 127 Int_t       iPWG4ThreeJets     = 0;      // Sona's thrust task
 128 Int_t       iPWG4QGSep     = 0;          // Sona's QG Separation task
 129 Int_t       iPWG4Minijet       = 0;      // Eva's Mini Jet Task cluster task
 130 Int_t       iPWG4KMeans        = 0;      // Andreas' KMeans task
 131 Int_t       iPWG4Cluster       = 0;      // CKB cluster task
 132 Int_t       iEMCUtilLibs       = 0;      // Flag to satisfy dependence on EMC utils
 133 Int_t       iPWG4PartCorrLibs  = 0;      // Gustavo's part corr analysis
 134 Int_t       iPWG4PartCorr      = 0;      // Gustavo's part corr analysis
 135 Int_t       iPWG4CaloQA        = 0;      // Gustavo's part corr analysis
 136 Int_t       iPWG4JetCorr       = 0;     // Paul's jet corr analysis
 137 Int_t       iPWG4Tagged        = 0;      // Gustavo's part corr analysis
 138 Int_t       iPWG4omega3pi      = 0;      // Omega to 3 pi analysis (PWG4)
 139 Int_t       iPWG4GammaConvLib     = 0;      // Gamma Conversio
 140 Int_t       iPWG4GammaConv     = 0;      // Gamma Conversio
 141 Int_t       iPWG4CaloConv     = 0;      // Gamma Conversio
 142 Int_t       kHighPtFilterMask  = 32;     // change depending on the used AOD Filter
 143 TString     kDeltaAODJetName   = "AliAOD.Jets.root";
 144 TString     kDeltaAODJetNameInput   = "";
 145 TString     kDeltaAODJCORRANName   = "AliAOD.JCORRAN.root";
 146 TString     kDeltaAODPartCorrName   = "AliAOD.PartCorr.root";
 147 TString     kFastEmbeddingAOD  = "emb/AliAOD.root";
 148 TString     kFastEmbAODList    = "";
 149
 150 //==============================================================================
 151 // ### PROOF Steering varibales
 152 //==============================================================================
 153 //== proof setup variables
 154 TString     kProofCluster      = "alicecaf.cern.ch";
 155 Bool_t      kProofUseAFPAR     = kFALSE;  // use AF special par file
 156 TString     kProofAFversion          = "AF-v4-17";
 157 //== proof input and output variables
 158 TString     kProofDataSet      = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
 159 Bool_t      kProofSaveToAlien   = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
 160 TString     kProofOutdir       = "";
 161 Bool_t      kProofClearPackages = kFALSE;
 162 Int_t       kProofEvents = 10000;
 163 Int_t       kProofOffset = 0;
 164 //== proof process variables
 165
 166
 167 //==============================================================================
 168 // ### Grid plugin Steering varibiables
 169 //==============================================================================
 170 //== grid plugin setup variables
 171 Bool_t      kPluginUse         = kTRUE;   // do not change
 172 Bool_t      kPluginUseProductionMode  = kFALSE;   // use the plugin in production mode
 173 TString     kPluginRootVersion       = "v5-28-00c";  // *CHANGE ME IF MORE RECENT IN GRID*
 174 TString     kPluginAliRootVersion    = "v4-21-01a-AN";  // *CHANGE ME IF MORE RECENT IN GRID*
 175 Bool_t      kPluginMergeViaJDL       = kTRUE;  // merge via JDL
 176 Bool_t      kPluginFastReadOption   = kFALSE;  // use xrootd tweaks
 177 Bool_t      kPluginOverwriteMode    = kTRUE;  // overwrite existing collections
 178 Int_t       kPluginOutputToRunNumber = 1;     // write the output to subdirs named after run number
 179 // TString kPluginExecutableCommand = "root -b -q";
 180 TString     kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
 181
 182 // == grid plugin input and output variables
 183 TString     kGridDatadir      = "/alice/sim/PDC_08b/LHC09a1/AOD/";
 184 Int_t         kGridMaxRunsFromList = 999999999;
 185 Int_t         kGridOffsetRunFromList = 0; // skip the first n runs from the list
 186 TString     kGridLocalRunList = "";
 187 TString     kGridOutdir       = ""; // AliEn output directory. If blank will become output_<kTrainName>
 188 TString     kGridDataSet      = ""; // sub working directory not to confuse different run xmls
 189 TString     kGridExtraAliendirLevel = ""; // sub working directory not to confuse different run xmls
 190 Int_t         kGridRunRange[2]       =  {0, -1}; // Set the run range
 191 TString     kGridRunPattern        = "%03d"; // important for leading zeroes!!
 192 TString     kGridPassPattern       = "";
 193 TString     kGridExtraFiles        = ""; // files that will be added to the input list in the JDL...
 194 Int_t         kGridMaxMergeFiles      = 25; // Number of files merged in a chunk grid run range
 195 TString     kGridMergeExclude       = "AliAOD.root"; // Files that should not be merged
 196 TString     kGridOutputStorages      = "disk=2"; // Make replicas on the storages
 197 // == grid process variables
 198 Int_t       kGridRunsPerMaster     = 100; // Number of runs per master job
 199 Int_t       kGridFilesPerJob       = 100; // Maximum number of files per job (gives size of AOD)
 200
 201 //==============================================================================
 202 // ### Local Steering variables
 203 //==============================================================================
 204 //== local setup variables
 205 //== local input and output variables
 206 TString     kLocalXMLDataset   = ""; // Change local xml dataset for local interactive analysis
 207 TString     kLocalDataList   = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
 208 // == local process variables
 209
 210 TString kPluginMode = "";
 211 TString kAnalysisMode = "";
 212
 213
 214 // Temporaries.
 215 TString anaPars = "";
 216 TString anaLibs = "";
 217 TString anaLibsExtra = "";
 218 TString anaSources = "";
 219 // Function signatures
 220 class AliAnalysisAlien;
 221 class AliAnalysisManager;
 222
 223 //______________________________________________________________________________
 224 void AnalysisTrainPWG4Jets(const char *analysis_mode="local",
 225                            const char *plugin_mode="",
 226                            const char *config_file="",Int_t iOffset = 0,Int_t iTotal = 0)
 227 {
 228 // Main analysis train macro. If a configuration file is provided, all parameters
 229 // are taken from there but may be altered by CheckModuleFlags.
 230
 231   // these flag may be needed by the config file
 232   kPluginMode   = plugin_mode;
 233   kAnalysisMode = analysis_mode;
 234
 235   if (strlen(config_file) && !LoadConfig(config_file)) return;
 236   if(iTotal>0)kGridMaxRunsFromList = iTotal; // overwrites the settings from config file
 237   if(iOffset)kGridOffsetRunFromList = iOffset;
 238   if(iOffset)kProofOffset = iOffset;
 239
 240
 241    TString smode(analysis_mode);
 242    smode.ToUpper();
 243    if (kSaveTrain)WriteConfig();
 244    // Check compatibility of selected modules
 245    CheckModuleFlags(smode);
 246    //     gROOT->ProcessLine(".trace");
 247
 248    printf("==================================================================\n");
 249    printf("===========    RUNNING ANALYSIS TRAIN %s IN %s MODE   ==========\n", kTrainName.Data(),smode.Data());
 250    printf("==================================================================\n");
 251                               printf("=  Configuring analysis train for:                               =\n");
 252    if (iAODanalysis) printf("=  AOD analysis                                                  =\n");
 253    else                     printf("=  ESD analysis                                                  =\n");
 254    if (iPhysicsSelection)   printf("=  Physics selection                                                =\n");
 255    if(iCentralitySelection)printf("=  Centrality selection                                                =\n");
 256    if (useTender)   printf("=  Using tender                                                =\n");
 257    if (iESDfilter)   printf("=  ESD filter                                                    =\n");
 258    if (iJETAN)       printf("=  Jet analysis                                                  =\n");
 259    printf("==================================================================\n");
 260
 261    char *printMask = ":: %20s  %10d\n";
 262    printf(printMask,"Fill AOD",(UInt_t)kFillAOD);
 263    printf(printMask,"Save AOD", (UInt_t)kSaveAOD);
 264    printf(printMask,"MC truth", (UInt_t)kUseMC);
 265    printf(printMask,"KINE filter", (UInt_t)kUseKinefilter);
 266    printf(printMask,"track refs", (UInt_t)kUseTR);
 267    printf(printMask,"tags", (UInt_t)kUseESDTags);
 268    printf(printMask,"AOD tags", (UInt_t)kUseAODTags);
 269    printf(printMask,"debugging", (UInt_t)kUseDebug);
 270    printf(printMask,"PAR files", (UInt_t)kUsePAR);
 271    printf(printMask,"AliEn plugin", (UInt_t)kPluginUse);
 272    printf(printMask,"JETAN subtract", (UInt_t)iJETSUBTRACT);
 273    printf(printMask,"PWG1 QA sym", iPWG1QASym);
 274    printf(printMask,"PWG4 Source Sara",iPWG4TmpSourceSara);
 275    printf(printMask,"PWG4 Fragmentation",iPWG4Fragmentation);
 276    printf(printMask,"PWG4 Jet Chem",iPWG4JetChem);
 277    printf(printMask,"PWG4 Jet tasks",iPWG4JetTasks);
 278    printf(printMask,"PWG4 Jet Services",iPWG4JetServices);
 279    printf(printMask,"PWG4 Jet Spectrum",iPWG4JetSpectrum);
 280    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 281    printf(printMask,"PWG4 UE",iPWG4UE);
 282    printf(printMask,"PWG4 Leading UE",iPWG4LeadingUE);
 283    printf(printMask,"PWG4 Corrections UE",iPWG4CorrectionsUE);
 284    printf(printMask,"PWG4 Pt QA MC",iPWG4PtQAMC);
 285    printf(printMask,"PWG4 Pt QA track",iPWG4PtTrackQA);
 286    printf(printMask,"PWG4 Pt Spectra",iPWG4PtSpectra);
 287    printf(printMask,"PWG4 Pt QA TPC",iPWG4PtQATPC);
 288    printf(printMask,"PWG4 Cosmics",iPWG4Cosmics);
 289    printf(printMask,"PWG4 Three Jets",iPWG4ThreeJets);
 290    printf(printMask,"PWG4 QGSep",iPWG4QGSep);
 291    printf(printMask,"PWG4 Minijet",iPWG4Minijet);
 292    printf(printMask,"PWG4 KMeans",iPWG4KMeans);
 293    printf(printMask,"PWG4 Cluster",iPWG4Cluster);
 294    printf(printMask,"PWG4 Part Corr",iPWG4PartCorr);
 295    printf(printMask,"PWG4 Calo QA",iPWG4CaloQA);
 296    printf(printMask,"PWG4 Jet Corr",iPWG4JetCorr);
 297    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 298    printf(printMask,"PWG4 Tagged",iPWG4Tagged);
 299    printf(printMask,"PWG4 omega to 3 pi ",iPWG4omega3pi);
 300    printf(printMask,"PWG4 Gamma Conv",iPWG4GammaConv);
 301    printf(printMask,"PWG4 Calo Conv",iPWG4CaloConv);
 302    printf(printMask,"HighPt FilterMask",kHighPtFilterMask);
 303
 304    //==========================================================================
 305    // Connect to back-end system
 306    if (!Connect(smode)) {
 307       ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
 308       return;
 309    }
 310
 311    // Load common libraries and set include path
 312    if (!LoadCommonLibraries(smode)) {
 313       ::Error("AnalysisTrain", "Could not load common libraries");
 314       return;
 315    }
 316
 317
 318
 319    // Make the analysis manager and connect event handlers
 320    AliAnalysisManager *mgr  = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
 321    if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
 322    if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
 323    mgr->SetNSysInfo(0);
 324    if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
 325    if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
 326    mgr->SetSkipTerminate(kSkipTerminate);
 327
 328    // Load analysis specific libraries
 329    if (!LoadAnalysisLibraries(smode)) {
 330       ::Error("AnalysisTrain", "Could not load analysis libraries");
 331      return;
 332    }
 333
 334    // Create input handler (input container created automatically)
 335    if (iAODanalysis) {
 336    // AOD input handler
 337       AliAODInputHandler *aodH = new AliAODInputHandler();
 338       mgr->SetInputEventHandler(aodH);
 339       if (kDeltaAODJetNameInput.Length()){
 340         Printf("Adding Friend %s",kDeltaAODJetNameInput.Data());
 341         aodH->AddFriend(kDeltaAODJetNameInput.Data());
 342       }
 343       //      if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
 344    } else {
 345    // ESD input handler
 346       AliESDInputHandler *esdHandler = new AliESDInputHandler();
 347       if (kUseESDTags) esdHandler->SetReadTags();
 348       esdHandler->SetReadFriends(kFALSE);
 349       mgr->SetInputEventHandler(esdHandler);
 350       //      if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
 351
 352    }
 353
 354    // Monte Carlo handler
 355    if (kUseMC && !iAODanalysis) {
 356       AliMCEventHandler* mcHandler = new AliMCEventHandler();
 357       mgr->SetMCtruthEventHandler(mcHandler);
 358       mcHandler->SetReadTR(kUseTR);
 359    }
 360    // AOD output container, created automatically when setting an AOD handler
 361    if (iAODhandler) {
 362       // AOD output handler
 363       AliAODHandler* aodHandler   = new AliAODHandler();
 364       aodHandler->SetOutputFileName("AliAOD.root");
 365       aodHandler->SetFillAODforRun(kFillAOD);
 366       //
 367       mgr->SetOutputEventHandler(aodHandler);
 368       AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
 369       cout_aod->SetSpecialOutput();
 370    }
 371    // Debugging if needed
 372
 373    if (kUseDebug){
 374      mgr->SetDebugLevel(3);
 375    }
 376    if(kUseSysInfo>0){
 377      mgr->RegisterExtraFile("syswatch.root");
 378      if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 379      kGridMergeExclude += "syswatch.root";
 380    }
 381    else{
 382      AliLog::SetGlobalLogLevel(AliLog::kError);
 383    }
 384
 385
 386    //==========================================================================
 387    // Create the chain. In this example it is created only from ALIEN files but
 388    // can be done to work in batch or grid mode as well.
 389    TChain *chain = CreateChain(smode, plugin_mode);
 390
 391    //==========================================================================
 392    // Load the tasks configuration macros for all wagons. These files are supposed now to be
 393    // in the current workdir, but in AliEn they will be in the file catalog,
 394    // mapped from AliRoot and pecified in the jdl input list.
 395
 396    // For now connection to top input container and common AOD output container
 397    // is done in this macro, but in future these containers will be connected
 398    // from each task configuration macro.
 399
 400    //
 401    // Tender and supplies. Needs to be called for every event.
 402    //
 403
 404    if (useTender) {
 405       gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/TenderSupplies/AddTaskTender.C");
 406       AliAnalysisTaskSE *tender = AddTaskTender(kTRUE);
 407       //      tender->SelectCollisionCandidates();
 408       tender->SetDebugLevel(2);
 409    }
 410
 411
 412    Float_t fTrackEtaWindow = 0.9;
 413    Float_t fJetEtaWindow   = 0.5;
 414    Float_t fVertexWindow =  10;
 415    /*
 416    if(kIsPbPb){// for pass1
 417      Float_t fTrackEtaWindow = 0.8;
 418      Float_t fJetEtaWindow   = 0.4;
 419    }
 420    */
 421
 422
 423    if(iPhysicsSelection && !iAODanalysis){
 424      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
 425      Int_t iTriggerHIC = 0;
 426      Bool_t rejectBkg = true;
 427      if(kIsPbPb){
 428        iTriggerHIC = 2;
 429        rejectBkg = false; // for the moment...
 430      }
 431      AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,rejectBkg);
 432
 433      //     mgr->RegisterExtraFile("event_stat.root");
 434      mgr->AddStatisticsTask();
 435    }
 436    else{
 437      iPhysicsSelectionFlag = AliVEvent::kMB;
 438    }
 439
 440    if(kIsPbPb&&!iAODanalysis){
 441
 442      // has to run before AOD filter
 443      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskCentrality.C");
 444      AliCentralitySelectionTask *taskC = AddTaskCentrality();
 445       if (!taskC) ::Warning("AnalysisTrainPWG4Jets", "AliCentralitySelectionTask cannot run for this train conditions - EXCLUDED");
 446
 447
 448      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskEventplane.C");
 449      AliEPSelectionTask *taskEP = AddTaskEventplane();
 450      if (!taskEP) ::Warning("AnalysisTrainPWG4Jets", "AliEventplan cannot run for this train conditions - EXCLUDED");
 451    }
 452
 453    if (iESDfilter && !iAODanalysis) {
 454       //  ESD filter task configuration.
 455       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskESDFilterPWG4Train.C");
 456       // switch on centrality make for PbPb
 457       AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kUseKinefilter); // carefull, if physics selection is enabled you may get not primary vertex pointer later on...
 458       taskesdfilter->SetEnableFillAOD(!kFilterAOD);
 459       taskesdfilter->DisableV0s();
 460       taskesdfilter->DisableCascades();
 461       taskesdfilter->DisableKinks();
 462       taskesdfilter->DisablePmdClusters();
 463       taskesdfilter->DisableCaloClusters();
 464       taskesdfilter->DisableCells();
 465
 466       if(kIsMC){
 467         mgr->RegisterExtraFile("pyxsec_hists.root");
 468         if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 469         kGridMergeExclude += "pyxsec_hists.root";
 470
 471       }
 472    }
 473
 474    // AOD tags
 475    if (kUseAODTags) {
 476       AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
 477       mgr->AddTask(tagTask);
 478       AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag",  TTree::Class(),
 479                                            AliAnalysisManager::kOutputContainer, "AOD.tag.root");
 480       mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
 481       mgr->ConnectOutput(tagTask, 1, coutTags);
 482    }
 483
 484    if (iPWG4FastEmbedding) {
 485      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFastEmbedding.C");
 486      AliAnalysisTaskFastEmbedding *taskEmbedding = 0;
 487      if(kFastEmbAODList.Length()) taskEmbedding = AddTaskFastEmbedding(kFastEmbAODList, 1);
 488      else                         taskEmbedding = AddTaskFastEmbedding(kFastEmbeddingAOD, 0);
 489      taskEmbedding->SetJetBranch("jetsAOD_UA104_B0_Filter00256_Cut01000");
 490      // taskEmbedding->SetEvtSelecMode(AliAnalysisTaskFastEmbedding::kEventsAll);
 491      // taskEmbedding->SetDebugLevel(10);
 492    }
 493
 494     // Jet analysis
 495    if (iJETAN) {
 496       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
 497       AliAnalysisTaskJets *taskjets = 0;
 498       if(iJETAN&1){
 499         /*
 500         taskjets = AddTaskJets(kHighPtFilterMask);
 501         taskjets->SetName("StandardJets");
 502         taskjets->SetNonStdBranch("");
 503         */
 504       }
 505       if(iJETAN&2){
 506         // Set only few jet finders  backgroudn subtraction w an wo
 507
 508         taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 509         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 510         TString cTmp("");
 511         cTmp = taskjets->GetNonStdBranch();
 512         if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 513
 514         taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,2.,0); // no background subtraction
 515         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 516         TString cTmp("");
 517         cTmp = taskjets->GetNonStdBranch();
 518         if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 519
 520
 521         // STANDARD UA jet finders pT cut 1 GeV background mode 2 R = 0.4
 522         if(kIsPbPb){
 523           taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 524           if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 525           cTmp = taskjets->GetNonStdBranch();
 526           if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 527           taskjets = AddTaskJets("AOD","UA1",0.4,kHighPtFilterMask,2.,2); // background subtraction
 528           if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 529           cTmp = taskjets->GetNonStdBranch();
 530           if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 531         }
 532
 533
 534
 535         // SICONE
 536         /*
 537         taskjets = AddTaskJets("AOD","SISCONE",0.4,kHighPtFilterMask,0.15,0); //no background subtraction to be done later....
 538         if(kDeltaAODJetName.Length()>0)taskjets->SetNonStdOutputFile(kDeltaAODJetName.Data());
 539         cTmp = taskjets->GetNonStdBranch();
 540         if(cTmp.Length()>0)kJetSubtractBranches += Form("%s ",cTmp.Data());
 541         if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 542         */
 543         if(kUseAODMC){
 544           // STANDARD UA jet finders pT cut 1 GeV background mode 2 R = 0.4
 545           if(kIsPbPb){
 546             taskjets = AddTaskJets("AODMC","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 547             cTmp = taskjets->GetNonStdBranch();
 548             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 549             taskjets = AddTaskJets("AODMC2","UA1",0.4,kHighPtFilterMask,1.,2); // background subtraction
 550             cTmp = taskjets->GetNonStdBranch();
 551             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 552           }
 553           else{
 554             taskjets = AddTaskJets("AODMC","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 555             cTmp = taskjets->GetNonStdBranch();
 556             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 557             taskjets = AddTaskJets("AODMC2","UA1",0.4,kHighPtFilterMask,1.,0); // no background subtraction
 558             cTmp = taskjets->GetNonStdBranch();
 559             if(cTmp.Length())kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 560           }
 561         }
 562         if(kDeltaAODJetName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJetName.Data());
 563       }
 564       if (!taskjets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 565    }
 566
 567
 568    if (iPWG4FastEmbedding && iJETAN) {
 569      AliAnalysisTaskJets *taskEmbJets = AddTaskJets("AODextra", "FASTJET", 0.4, kHighPtFilterMask);
 570      taskEmbJets->ReadAODFromOutput();
 571      kJetSubtractBranches_extra += Form("%s ", taskEmbJets->GetNonStdBranch());
 572
 573      taskEmbJets = AddTaskJets("AODextraonly", "FASTJET", 0.4, kHighPtFilterMask);
 574      taskEmbJets->ReadAODFromOutput();
 575
 576      taskEmbJets = AddTaskJets("AODextra", "UA1", 0.4, kHighPtFilterMask,1.,0);
 577      taskEmbJets->ReadAODFromOutput();
 578      taskEmbJets = AddTaskJets("AODextraonly", "UA1", 0.4, kHighPtFilterMask,1.,0);
 579      taskEmbJets->ReadAODFromOutput();
 580      taskEmbJets = AddTaskJets("AODextra", "UA1", 0.4, kHighPtFilterMask,1.,2);
 581      taskEmbJets->ReadAODFromOutput();
 582    }
 583
 584    if(iPWG4Cluster){
 585      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
 586      AliAnalysisTaskJetCluster *taskCl = 0;
 587      Float_t fCenUp = 0;
 588      Float_t fCenLo = 0;
 589      if(kIsPbPb&&!kIsMC){
 590        fCenLo = 0;
 591        fCenUp = 80;
 592      }
 593      if(iPWG4Cluster&1){
 594
 595        if(kIsPbPb){
 596          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow,0); // this one is for the background and random jets, random cones with no skip
 597          taskCl->SetBackgroundCalc(kTRUE);
 598          taskCl->SetNRandomCones(1);
 599          //      taskCl->SetDebugLevel(11);
 600          taskCl->SetCentralityCut(fCenLo,fCenUp);
 601
 602          taskCl->SetJetTypes(1<<0|1<<2|1<<3);
 603          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 604          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 605          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 606          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 607
 608          kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 609          kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 610
 611          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),1.0,fTrackEtaWindow,fVertexWindow,0); // this one is for the background and random jets, random cones with no skip
 612          taskCl->SetNRandomCones(1);
 613          taskCl->SetBackgroundCalc(kTRUE);
 614          taskCl->SetCentralityCut(fCenLo,fCenUp);
 615          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 616
 617          taskCl->SetJetTypes(1<<0|1<<2|1<<3);
 618          kDefaultJetBackgroundBranchCut1 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 619          kJetSubtractBranchesCut1 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 620          kJetSubtractBranchesCut1 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 621          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 622          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 623          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 624
 625          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),2.0,fTrackEtaWindow,fVertexWindow,0); // this one is for the background and random jets, random cones with no skip
 626          taskCl->SetNRandomCones(1);
 627          taskCl->SetBackgroundCalc(kTRUE);
 628          taskCl->SetCentralityCut(fCenLo,fCenUp);
 629          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 630
 631          taskCl->SetJetTypes(1<<0|1<<2|1<<3);
 632          kDefaultJetBackgroundBranchCut2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 633          kJetSubtractBranchesCut2 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 634          kJetSubtractBranchesCut2 += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 635          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 636          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 637          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 638
 639
 640          if (iPWG4FastEmbedding) {
 641            AliAnalysisTaskJetCluster *taskClEmb = 0;
 642            taskClEmb = AddTaskJetCluster("AODextra","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 643            taskClEmb->SetBackgroundCalc(kTRUE);
 644            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 645            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 646            kDefaultJetBackgroundBranch_extra = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskClEmb->GetJetOutputBranch());
 647
 648            taskClEmb = AddTaskJetCluster("AODextraonly","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 649            taskClEmb->SetBackgroundCalc(kFALSE);
 650            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 651            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 652
 653            taskClEmb = AddTaskJetCluster("AODextra","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 654            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 655            taskClEmb->SetBackgroundBranch(kDefaultJetBackgroundBranch_extra.Data());
 656            kJetSubtractBranches_extra += Form("%s ",taskClEmb->GetJetOutputBranch());
 657            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 658
 659            taskClEmb = AddTaskJetCluster("AODextraonly","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 660            taskClEmb->SetCentralityCut(fCenLo,fCenUp);
 661            if(iAODanalysis==2)taskClEmb->SetAODTrackInput(kTRUE);
 662          }
 663
 664          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.2,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow,0); // this one is for the background and random jets
 665          taskCl->SetNRandomCones(1);
 666          taskCl->SetBackgroundCalc(kTRUE);
 667          taskCl->SetCentralityCut(fCenLo,fCenUp);
 668          taskCl->SetJetTypes(1<<0|1<<2|1<<3);
 669          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 670          kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),0)));
 671          kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 672
 673
 674
 675          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 676        }
 677        else{
 678          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background jets
 679          taskCl->SetBackgroundCalc(kTRUE);
 680          kDefaultJetBackgroundBranch = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 681          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 682          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 683
 684          taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 685          taskCl->SetBackgroundCalc(kTRUE);
 686          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 687          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 688        }
 689
 690        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // thid id sldo got the random cones but avoiding the two leading jets
 691        taskCl->SetCentralityCut(fCenLo,fCenUp);
 692        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 693        taskCl->SetNRandomCones(1);
 694        if(iFilterAnalysis==2){
 695          taskCl->SetJetTriggerPtCut(kJetTriggerPtCut);
 696        }
 697        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 698
 699        taskCl->SetJetTypes(1<<0|1<<2); // only store the RC on full event with 2 removed
 700        kDefaultJetBranch = taskCl->GetJetOutputBranch();
 701        kJetSubtractBranches += Form("%s ",taskCl->GetJetOutputBranch());
 702        //       kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip02");
 703        //       kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 704        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 705        kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),2)));
 706        //       kJetListSpectrum.Add(new TObjString(Form("%sRandomCone_random",taskCl->GetJetOutputBranch())));
 707
 708        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),1.0,fTrackEtaWindow,fVertexWindow);
 709        taskCl->SetNRandomCones(1);
 710        taskCl->SetCentralityCut(fCenLo,fCenUp);
 711        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 712        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchCut1.Data());
 713
 714        taskCl->SetJetTypes(1<<0|1<<2); // only store the RC on full event with 2 removed
 715        kJetSubtractBranchesCut1 += Form("%s ",taskCl->GetJetOutputBranch());
 716        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 717        kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),2)));
 718
 719
 720        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1,kDeltaAODJetName.Data(),2.0,fTrackEtaWindow,fVertexWindow);
 721        taskCl->SetCentralityCut(fCenLo,fCenUp);
 722        taskCl->SetNRandomCones(1);
 723        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 724        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchCut2.Data());
 725        taskCl->SetJetTypes(1<<0|1<<2); // only store the RC on full event with 2 removed
 726        kJetSubtractBranchesCut2 += Form("%s ",taskCl->GetJetOutputBranch());
 727        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 728        kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),2)));
 729
 730        // tmp track qa...
 731        /*
 732        taskCl = AddTaskJetCluster("AOD","",1<<8,iPhysicsSelectionFlag,"ANTIKT",0.4,2,1,kDeltaAODJetName.Data(),2.0);
 733        taskCl->SetCentralityCut(fCenLo,fCenUp);
 734        taskCl->SetFilterMask(1<<4|1<<8,1);
 735        */
 736        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.2,0,1,kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow,2);
 737        taskCl->SetCentralityCut(fCenLo,fCenUp);
 738        taskCl->SetNRandomCones(1);
 739        if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 740        if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());
 741
 742        taskCl->SetJetTypes(1<<0|1<<2);
 743        kJetSubtractBranches += Form("%s ",taskCl->GetJetOutputBranch());
 744        //       kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomConeSkip00");
 745        //       kJetSubtractBranches += Form("%s%s ",taskCl->GetJetOutputBranch(),"RandomCone_random");
 746        kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 747        kJetListSpectrum.Add(new TObjString(Form("%sRandomConeSkip%02d",taskCl->GetJetOutputBranch(),2)));
 748
 749
 750        if(kUseAODMC){
 751          if(kIsPbPb){
 752            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 753            taskCl->SetBackgroundCalc(kTRUE);
 754            kDefaultJetBackgroundBranchMC = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 755            if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 756          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 757
 758          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fVertexWindow,fVertexWindow); // this one is for the background and random jets
 759            taskCl->SetBackgroundCalc(kTRUE);
 760            kDefaultJetBackgroundBranchMC2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 761            if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 762            kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 763          }
 764          else{
 765            taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 766            taskCl->SetBackgroundCalc(kTRUE);
 767            kDefaultJetBackgroundBranchMC = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 768          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 769
 770          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"KT",0.6,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow); // this one is for the background and random jets
 771            taskCl->SetBackgroundCalc(kTRUE);
 772            kDefaultJetBackgroundBranchMC2 = Form("%s_%s",AliAODJetEventBackground::StdBranchName(),taskCl->GetJetOutputBranch());
 773            if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 774            kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 775            // pp background calcs...
 776          }
 777
 778          taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 779          if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchMC.Data());
 780          kDefaultJetBranchMC = taskCl->GetJetOutputBranch();
 781          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 782          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 783
 784          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelectionFlag,"ANTIKT",0.4,0,1, kDeltaAODJetName.Data(),0.15,fTrackEtaWindow,fVertexWindow);
 785          if(kIsPbPb)taskCl->SetBackgroundBranch(kDefaultJetBackgroundBranchMC2.Data());
 786          kDefaultJetBranchMC2 = taskCl->GetJetOutputBranch();
 787          if(iAODanalysis==2)taskCl->SetAODTrackInput(kTRUE);
 788          kJetListSpectrum.Add(new TObjString(taskCl->GetJetOutputBranch()));
 789        }
 790
 791
 792        if (!taskCl) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
 793      }
 794    }
 795
 796
 797    if(iJETSUBTRACT&&kJetSubtractBranches.Length()){
 798      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetBackgroundSubtract.C");
 799      AliAnalysisTaskJetBackgroundSubtract *taskSubtract = 0;
 800      if(kJetSubtractBranches.Length()){
 801
 802
 803
 804
 805        for(int iB = 1;iB<3;iB++){
 806          if(iB>2)continue;
 807          taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches,iB,kJetSubtractMask1.Data(),kJetSubtractMask2.Data());
 808          taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch.Data());         taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 809          if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 810          taskSubtract->SetKeepJets(kTRUE);
 811          TString cTmp;
 812          TObjArray *objArr = kJetSubtractBranches.Tokenize(" ");
 813          for(int iJB = 0;iJB<objArr->GetEntries();iJB++){
 814            TObjString *ostr = (TObjString*)objArr->At(iJB);
 815            cTmp = ostr->GetString().Data();
 816            cTmp.ReplaceAll(kJetSubtractMask1.Data(),Form(kJetSubtractMask2.Data(),iB));
 817            kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 818          }
 819
 820          //     taskSubtract->SetDebugLevel(3);
 821          if(iB==2){
 822            if(kJetSubtractBranches.Contains(kDefaultJetBranch.Data())&&kIsPbPb){
 823              kDefaultJetBranch.ReplaceAll(taskSubtract->GetToReplace(),Form(taskSubtract->GetReplacementMask(),taskSubtract->GetSubtractionMethod()));
 824            }
 825          }
 826
 827        }
 828
 829        //
 830        // cut1
 831        Int_t iB = 2;
 832        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranchesCut1,iB,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"Cut1000");
 833        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranchCut1.Data());
 834        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 835        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 836
 837        objArr = kJetSubtractBranchesCut1.Tokenize(" ");
 838        for(int iJB = 0;iJB<objArr->GetEntries();iJB++){
 839          TObjString *ostr = (TObjString*)objArr->At(iJB);
 840          cTmp = ostr->GetString().Data();
 841          cTmp.ReplaceAll(kJetSubtractMask1.Data(),Form(kJetSubtractMask2.Data(),iB));
 842          kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 843        }
 844
 845        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranchesCut2,iB,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"Cut2000");
 846        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranchCut2.Data());
 847        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 848        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 849
 850        objArr = kJetSubtractBranchesCut2.Tokenize(" ");
 851        for(int iJB = 0;iJB<objArr->GetEntries();iJB++){
 852          TObjString *ostr = (TObjString*)objArr->At(iJB);
 853          cTmp = ostr->GetString().Data();
 854          cTmp.ReplaceAll(kJetSubtractMask1.Data(),Form(kJetSubtractMask2.Data(),iB));
 855          kJetListSpectrum.Add(new TObjString(cTmp.Data()));
 856        }
 857
 858      }
 859      if(kJetSubtractBranches_extra.Length()){
 860        taskSubtract = AddTaskJetBackgroundSubtract(kJetSubtractBranches_extra,2,kJetSubtractMask1.Data(),kJetSubtractMask2.Data(),"extra");
 861        taskSubtract->SetBackgroundBranch(kDefaultJetBackgroundBranch_extra.Data());
 862        taskSubtract->SelectCollisionCandidates(iPhysicsSelectionFlag);
 863        //taskSubtract->SetDebugLevel(3);
 864        if(kDeltaAODJetName.Length()>0)taskSubtract->SetNonStdOutputFile(kDeltaAODJetName.Data());
 865        if(kJetSubtractBranches_extra.Contains(kDefaultJetBranch.Data())){
 866          kDefaultJetBranch.ReplaceAll(taskSubtract->GetToReplace(),Form(taskSubtract->GetReplacementMask(),taskSubtract->GetSubtractionMethod()));
 867        }
 868      }
 869      if (!taskSubtract) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetBackgroundSubtrac cannot run for this train conditions - EXCLUDED");
 870    }
 871
 872    if (iDIJETAN) {
 873       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
 874       AliAnalysisTaskDiJets *taskdijets = 0;
 875       if(iDIJETAN&1)taskdijets = AddTaskDiJets();
 876       if (!taskdijets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 877       if(iDIJETAN&2){
 878         taskdijets = AddTaskDiJets("jetsAOD_CDF07");
 879         taskdijets = AddTaskDiJets("jetsAOD_DA07");
 880         taskdijets = AddTaskDiJets("jetsAOD_FASTJET07");
 881         taskdijets = AddTaskDiJets("jetsAOD_FASTKT07");
 882         taskdijets = AddTaskDiJets("jetsAOD_SISCONE07");
 883         taskdijets = AddTaskDiJets("jetsAOD_UA107");
 884       }
 885    }
 886
 887    if(iPWG1QASym){
 888      gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
 889      AliAnalysisTaskQASym *taskQASym = AddTaskQAsym(-1);
 890      if (!taskQASym) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQASym cannot run for this train conditions - EXCLUDED");
 891    }
 892
 893
 894
 895    if(iPWG4TmpSourceSara){
 896      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskEta.C");
 897      AliAnalysisTaskEta *taskEta = AddTaskEta();
 898      if (!taskEta) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskEta cannot run for this train conditions - EXCLUDED");
 899    }
 900
 901
 902    if(iPWG4JetServices){
 903      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
 904      AliAnalysisTaskJetServices *taskjetServ = 0;
 905      taskjetServ = AddTaskJetServices("/Users/kleinb/Dropbox/SharedJets/Christian/Files/PWG4_JetTasksOutput_110818a.root");
 906      if (!taskjetServ) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
 907      if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
 908      else taskjetServ->SetRunRange(110000,160000);
 909      taskjetServ->SetMCData(kIsMC);
 910      taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
 911      taskjetServ->SetPhysicsSelectionFlag(iPhysicsSelectionFlag); //
 912      taskjetServ->SetNonStdFile(kDeltaAODJetName.Data());
 913      taskjetServ->SetTrackEtaWindow(fTrackEtaWindow);
 914        taskjetServ->SetZVertexCut(fVertexWindow);
 915      taskjetServ->SetFilterMask(kHighPtFilterMask);
 916
 917      if(kIsPbPb)taskjetServ->SetCollisionType(AliAnalysisTaskJetServices::kPbPb);
 918      else taskjetServ->SetCollisionType(AliAnalysisTaskJetServices::kPP);
 919      if(kIsPbPb){
 920        if(kDeltaAODJetName.Length()>0&&kFilterAOD)taskjetServ->SetFilterAODCollisions(kTRUE);
 921        //       else if(iAODanalysis)taskjetServ->SetFilterAODCollisions(kTRUE);
 922        //       taskjetServ->SetDebugLevel(3);
 923      }
 924      if(iAODanalysis){
 925        //
 926        taskjetServ->SetAODInput(kTRUE);
 927      }
 928    }
 929
 930    if(iPWG4JetSpectrum){
 931      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
 932      AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
 933      TString bkgClusters = kDefaultJetBackgroundBranch.Data();
 934      bkgClusters.ReplaceAll(Form("%s_",AliAODJetEventBackground::StdBranchName()),"");
 935      Printf("############# Possible jet branches ###################");
 936      for(int iJF = 0;iJF < kJetListSpectrum.GetSize();iJF++){
 937        TObjString *objStr = (TObjString*)kJetListSpectrum.At(iJF);
 938        Printf("%3d: %s",iJF+1,objStr->GetString().Data());
 939      }
 940
 941      //     Printf("Type q to exit");if(getchar()=='q')return;
 942      if(iPWG4JetSpectrum&1){
 943        if(kIsPbPb){
 944          for(int iJF = 0;iJF < kJetListSpectrum.GetSize();iJF++){
 945            Long64_t value = kJetMapSpectrum(iJF+1);
 946            Printf("iJF: %d value: %d", iJF+1,(Int_t)value);
 947            if(value==0)continue;
 948            TObjString *objStr = (TObjString*)kJetListSpectrum.At(iJF);
 949            TString bName1 = objStr->GetString().Data();
 950            TString bName2[3];
 951
 952            TObjString *objStrBkg = (TObjString*)kJetListSpectrum.At(iJF);
 953            TString bBkgName1("");
 954            TString bBkgName2[3];
 955
 956            Long64_t valueBkg1 = kJetBackMapSpectrum(iJF+1);
 957            if(valueBkg1>0){
 958              TObjString *objStrBkg = (TObjString*)kJetListSpectrum.At(valueBkg1-1);
 959              bBkgName1 = objStrBkg->GetString().Data();
 960            }
 961            Int_t iPartner = 0;
 962            if(value>0){
 963              Int_t iJF2 = -1;
 964              for(int i = 0;i<3;i++){
 965                iJF2 = value/kJetMapOffset[i]-1;
 966                value = value%kJetMapOffset[i];
 967                Printf("%d %d", iJF2+1,(Int_t)value);
 968                if(iJF2>=0&&iJF2<kJetListSpectrum.GetSize()){
 969                  TObjString *objStr2 = (TObjString*)kJetListSpectrum.At(iJF2);
 970                  bName2[iPartner] = objStr2->GetString().Data();
 971                  Long64_t valueBkg2 = kJetBackMapSpectrum(iJF2+1);
 972                  if(valueBkg2>0){
 973                    TObjString *objStrBkg2 = (TObjString*)kJetListSpectrum.At(valueBkg2-1);
 974                    bBkgName2[iPartner] = objStrBkg2->GetString().Data();
 975                  }
 976                  iPartner++;
 977                }
 978              }
 979            }
 980
 981
 982            // loop over all centralities
 983            for(int ic = 0;ic<5;ic++){
 984              if(ic!=0)continue;
 985              Bool_t bDone = kFALSE;
 986              for(int i = 0;i<TMath::Max(iPartner,1);i++){
 987                if(bName2[i].Length()){
 988                  taskjetSpectrum = AddTaskJetSpectrum2(bName1.Data(),bName2[i].Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,ic);
 989                  bDone = kTRUE;
 990                }
 991                else{
 992                  if(!bDone){
 993                    taskjetSpectrum = AddTaskJetSpectrum2(bName1.Data(),bName2[i].Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,ic);
 994                    bDone = kTRUE;
 995                  }
 996                  else{
 997                    continue;
 998                  }
 999                }
1000                Printf("%s/%s %s/%s",bName1.Data(),bBkgName1.Data(),bName2[i].Data(),bBkgName2[i].Data());
1001
1002                // setting all the other things...
1003                taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
1004                taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
1005
1006                // negative values do not fill the track histos
1007                taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,-1);
1008                taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGen,-1);
1009                if(!bName1.Contains("ANTIKT")||bName1.Contains("Cone")){
1010                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRecFull,-1);
1011                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetRec,-1);
1012                }
1013
1014
1015                if(bName2[i].Length()==0){
1016                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGenFull,0);
1017                  taskjetSpectrum->SetFlagJetType(AliAnalysisTaskJetSpectrum2::kJetGen,0);
1018                }
1019                if(iAODanalysis==1){
1020                  taskjetSpectrum->SetAODJetInput(kTRUE);
1021                  taskjetSpectrum->SetAODTrackInput(kTRUE);
1022                }
1023                else if (iAODanalysis==2){
1024                  taskjetSpectrum->SetAODTrackInput(kTRUE);
1025                  taskjetSpectrum->SetAODJetInput(kFALSE);
1026                }
1027                //              taskjetSpectrum->SetDebugLevel(11);
1028                taskjetSpectrum->SetBranchBkgRec(bBkgName1.Data());
1029                taskjetSpectrum->SetBranchBkgGen(bBkgName2[i].Data());
1030              }
1031            }
1032          }
1033        }
1034        else{ // ! PbPb
1035          Int_t i = 0;
1036
1037          taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
1038                                                "",kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1039
1040
1041
1042          if(kDefaultJetBranchMC.Length()){
1043            taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
1044                                                kDefaultJetBranchMC.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1045            //      taskjetSpectrum->SetMinJetPt(10);
1046            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
1047            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
1048            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1049            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1050            if(iAODanalysis)SetAODInput(taskjetSpectrum);
1051          }
1052          if(kDefaultJetBranchMC2.Length()){
1053            taskjetSpectrum = AddTaskJetSpectrum2(kDefaultJetBranch.Data(),
1054                                                  kDefaultJetBranchMC2.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1055            //      taskjetSpectrum->SetMinJetPt(10);
1056            taskjetSpectrum->SetTrackEtaWindow(fTrackEtaWindow);
1057            taskjetSpectrum->SetJetEtaWindow(fJetEtaWindow);
1058            taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1059            taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1060            if(iAODanalysis)SetAODInput(taskjetSpectrum);
1061          }
1062
1063          /*
1064          TString tmp2(kDefaultJetBranch.Data());
1065          tmp2.ReplaceAll(Form(kJetSubtractMask2.Data(),0),Form(kJetSubtractMask2.Data(),2));
1066          taskjetSpectrum = AddTaskJetSpectrum2(tmp2.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1067          //      taskjetSpectrum->SetDebugLevel(3);
1068          //        taskjetSpectrum->SetMinJetPt(10);
1069          taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1070          taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1071          taskjetSpectrum->SetTrackEtaWindow(0.8);
1072          taskjetSpectrum->SetJetEtaWindow(0.4);
1073
1074          // check the old subtracted vs. the new subtracted
1075          TString tmp3(kDefaultJetBranch.Data());
1076          tmp3.ReplaceAll(Form(kJetSubtractMask2.Data(),0),Form(kJetSubtractMask2.Data(),3));
1077          taskjetSpectrum = AddTaskJetSpectrum2(tmp3.Data(),kDefaultJetBranch.Data(),kDeltaAODJetName.Data(),kHighPtFilterMask,AliVEvent::kMB,0,i);
1078          //      taskjetSpectrum->SetDebugLevel(3);
1079          //        taskjetSpectrum->SetMinJetPt(10);
1080          taskjetSpectrum->SetBranchBkgRec(bkgClusters.Data());
1081          taskjetSpectrum->SetBranchBkgGen(bkgClusters.Data());
1082          taskjetSpectrum->SetTrackEtaWindow(0.8);
1083          taskjetSpectrum->SetJetEtaWindow(0.4);
1084          if(iAODanalysis)SetAODInput(taskjetSpectrum);
1085          */
1086        }
1087        if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
1088      }
1089    }
1090    AliAnalysisManager::SetCommonFileName("PWG4_Fragmentation.root");
1091    if(iPWG4Fragmentation){
1092      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragmentationFunction.C");
1093        AliAnalysisTaskFragmentationFunction *taskFrag = 0;
1094        if(kUseAODMC){
1095
1096        }
1097        else{
1098
1099
1100          for(int ic = 1;ic < 5;ic++){
1101            // Anti-kT
1102            taskFrag = AddTaskFragmentationFunction(1<<23,kHighPtFilterMask, ic);
1103            if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1104            if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1105
1106            // UA1
1107            taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask, ic);
1108            if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1109            if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1110
1111          // SISCONE
1112            if(ic==1){
1113              /*
1114                taskFrag = AddTaskFragmentationFunction(1<<28,kHighPtFilterMask, ic);
1115                taskFrag = AddTaskFragmentationFunction(1<<29,kHighPtFilterMask, ic);
1116                taskFrag = AddTaskFragmentationFunction(1<<30,kHighPtFilterMask, ic);
1117              */
1118
1119
1120
1121              // Anti-kT B2 - B3
1122              if(!iAODanalysis==1){
1123                taskFrag = AddTaskFragmentationFunction(1<<26,kHighPtFilterMask, ic);
1124                if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1125                if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1126
1127                taskFrag = AddTaskFragmentationFunction(1<<27,kHighPtFilterMask, ic);
1128                if(kDeltaAODJetName.Length()>0)taskFrag->SetNonStdFile(kDeltaAODJetName.Data());
1129                if(iAODanalysis==2)taskFrag->UseAODInputJets(kFALSE);
1130              }
1131            }
1132
1133          }
1134
1135
1136        }
1137        if (!taskFrag) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskFragmentationFunction cannot run for this train conditions - EXCLUDED");
1138    }
1139
1140    if(iPWG4JetChem){
1141      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
1142      AliAnalysisTask *taskChem = AddTaskJetChem(kHighPtFilterMask);
1143      if (!taskChem) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
1144    }
1145
1146    if (iPWG4JetResponse) {
1147      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetResponse.C");
1148      AliAnalysisTask *taskJetResponse = 0;
1149
1150      if(iJETAN){
1151         taskJetResponse = AddTaskJetResponse("jets", "FASTJET", 0.4, kHighPtFilterMask, 0.15, 0);
1152         taskJetResponse = AddTaskJetResponse("jets", "FASTJET", 0.4, kHighPtFilterMask, 0.15, 1);
1153
1154         taskJetResponse = AddTaskJetResponse("jets", "UA1", 0.4, kHighPtFilterMask, 1., 0);
1155         taskJetResponse = AddTaskJetResponse("jets", "UA1", 0.4, kHighPtFilterMask, 1., 2);
1156      }
1157      if(iPWG4Cluster){
1158         taskJetResponse = AddTaskJetResponse("clusters", "ANTIKT", 0.4, kHighPtFilterMask, 0.15, 0);
1159         taskJetResponse = AddTaskJetResponse("clusters", "ANTIKT", 0.4, kHighPtFilterMask, 0.15, 1);
1160      }
1161      if (!taskJetResponse) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetResponse cannot run for this train conditions - EXCLUDED");
1162
1163    }
1164
1165    if(iPWG4JCORRAN){
1166      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJCORRANTask.C");
1167      AliJCORRANTask* corran = AddTaskJCORRAN(kDeltaAODJCORRANName.Data(),0);
1168      if(!corran)::Warning("AnalysisTrainPWG4Jets", "AliJCORRANTask cannot run for this train conditions - EXCLUDED");
1169      else{
1170        if(kDeltaAODJCORRANName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJCORRANName.Data());
1171      }
1172    }
1173
1174    if(iPWG4UE){
1175      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskUE.C");
1176      AliAnalysisTaskUE *taskUE = 0;
1177      if(iPWG4UE&1)taskUE = AddTaskUE();
1178      if(iPWG4UE&2){
1179        taskUE  =AddTaskUE("jetsAOD_CDF04","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1180        //       taskUE  =AddTaskUE("jetsAOD_CDF07","CDF", "LJ", "TRANSV","MSP");
1181        taskUE  =AddTaskUE("jetsAOD_SISCONE04","CDF", "LJ", "TRANSV","MSP");
1182        //       taskUE  =AddTaskUE("jetsAOD_SISCONE07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1183        taskUE  =AddTaskUE("jetsAOD_ICDF","CDF","LJ","TRANSV","MSP");
1184        taskUE  =AddTaskUE("jetsAOD_FASTKT04","CDF", "LJ", "TRANSV","MSP");
1185        //       taskUE  =AddTaskUE("jetsAOD_FASTKT07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
1186        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta05", "TRANSV","MSP");
1187        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta09", "TRANSV","MSP");
1188      }
1189
1190      if (!taskUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskUE cannot run for this train conditions - EXCLUDED");
1191    }
1192
1193    if(iPWG4LeadingUE){
1194      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskLeadingTrackUE.C");
1195      AliAnalysisTaskLeadingTrackUE *taskLeadingUE = AddTaskLeadingTrackUE(kUseMC);
1196      if (!taskLeadingUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTasLeadingTrackkUE cannot run for this train conditions - EXCLUDED");
1197      //     taskLeadingUE->SetFilterBit(64);
1198    }
1199
1200
1201    if(iPWG4CorrectionsUE){
1202      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCorrectionsUE.C");
1203      AliAnalysisTaskCorrectionsUE *taskCorrectionsUE = 0;
1204      if(iPWG4CorrectionsUE&1)taskCorrectionsUE = AddTaskCorrectionsUE("jetsAOD_NONE","CDF","MP_eta05","TRANSV","MSP",kFALSE);
1205      if (!taskCorrectionsUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCorrectionsUE cannot run for this train conditions - EXCLUDED");
1206    }
1207
1208    if(iPWG4ThreeJets){
1209      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskThreeJets.C");
1210      AliAnalysisTaskThreeJets *taskThree = AddTaskThreeJets();
1211      if(!taskThree)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskThreets cannot run for this train conditions - EXCLUDED");
1212    }
1213    if(iPWG4QGSep){
1214      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskQGSep.C");
1215      AliAnalysisTaskQGSep *taskQGSep = AddTaskQGSep(kUseMC,iAODanalysis);
1216      if(!taskQGSep)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQGSep cannot run for this train conditions - EXCLUDED");
1217    }
1218
1219
1220    if(iPWG4Minijet){
1221      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskMinijet.C");
1222      AliAnalysisTaskMinijet *taskMini = AddTaskMinijet(-1,"esd",kUseMC,kGridDataSet);
1223      // if we ha highmult trigger add another task
1224      if(!taskMini)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskMinjet cannot run for this train conditions - EXCLUDED");
1225    }
1226
1227    AliAnalysisManager::SetCommonFileName("PWG4_HighPtQA.root");
1228    if(iPWG4PtQAMC){
1229      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
1230      AliPWG4HighPtQAMC *taskQAMC = 0;
1231      if(kUseMC){
1232        if(iPWG4PtQAMC&1){
1233          taskQAMC = AddTaskPWG4HighPtQAMCAll(kGridDataSet.Data());
1234        }
1235      }
1236      if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
1237    }
1238
1239    if(iPWG4PtTrackQA){
1240      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtTrackQA.C");
1241      if(iPWG4PtTrackQA&2)AddTaskPWG4HighPtTrackQAAll(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1242      else AddTaskPWG4HighPtTrackQAAllReduced(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1243    }
1244
1245    if(iPWG4PtQATPC){
1246      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
1247      AliPWG4HighPtQATPConly *taskQATPC = 0;
1248      if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),1);
1249      if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),2);
1250
1251  if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
1252    }
1253
1254    if(iPWG4Cosmics){
1255      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4CosmicCandidates.C");
1256
1257      AliPWG4CosmicCandidates *taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(0);
1258      taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(1);
1259
1260      if (!taskPWG4CosmicCandidates) ::Warning("AnalysisTrainPWG4Jets", "AddTaskPWG4CosmicCandidates cannot run for this train conditions - EXCLUDED");
1261    }
1262
1263
1264    if(iPWG4PtSpectra){
1265      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
1266      AddTaskPWG4HighPtSpectraAll(kGridDataSet.Data(),kIsPbPb,iAODanalysis);
1267    }
1268
1269    if(iPWG4KMeans){
1270      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
1271      AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
1272      if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
1273    }
1274
1275    if(iPWG4PartCorr){
1276      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
1277      AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
1278      if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
1279      AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
1280      if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
1281      if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data());
1282    }
1283
1284    if(iPWG4CaloQA){
1285      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
1286      AliAnalysisTaskParticleCorrelation *taskcaloQA =  AddTaskCalorimeterQA("ESD",kFALSE,kIsMC,kCaloQAOutputFileName.Data());
1287      if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
1288      //  if(kCaloQAOutputFileName.Length()>0)mgr->RegisterExtraFile(kCaloQAOutputFileName.Data());
1289    }
1290
1291    if(iPWG4JetCorr){
1292      //     using namespace JetCorrelHD;
1293      TString cdir = gSystem->WorkingDirectory();
1294      gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
1295      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
1296      AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
1297      gSystem->ChangeDirectory(cdir);
1298      if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel  cannot run for this train conditions - EXCLUDED");
1299    }
1300
1301    if(iPWG4Tagged){
1302      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
1303      AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
1304      taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
1305      if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons  cannot run for this train conditions - EXCLUDED");
1306    }
1307    if (iPWG4omega3pi) {
1308      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
1309      AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
1310      if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
1311  for these train conditions - EXCLUDED");
1312    }
1313
1314    // PWG4 gamma conversion analysis
1315    if (iPWG4GammaConv) {
1316       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
1317       TString cdir = gSystem->WorkingDirectory();
1318       gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
1319       //      TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
1320       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
1321       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
1322       TString gcArguments = "-run-on-train -run-jet -run-omega-meson -use-own-xyz -run-neutralmeson -no-aod";
1323       //      TString kGCAnalysisCutSelectionId="9003562000100310";
1324       //      TString kGCAnalysisCutSelectionId="9003562000100312";
1325       //      gcArguments.Append(Form(" -set-cut-selection %s ",kGCAnalysisCutSelectionId.Data()));
1326       if(!kIsMC)gcArguments += " -mc-off";
1327       AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
1328       gSystem->ChangeDirectory(cdir);
1329       taskGammaConversion->SelectCollisionCandidates();
1330       if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
1331    }
1332
1333    if (iPWG4CaloConv) {
1334       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCaloConv.C");
1335       AliAnalysisTaskCaloConv * taskCaloConv = AddTaskCaloConv();
1336       if (!taskCaloConv) ::Warning("AnalysisTrainNew", "AliAnalysisTaskCaloConv cannot run for these train conditions - EXCLUDED");
1337    }
1338
1339
1340
1341    //==========================================================================
1342    // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
1343    // Run the analysis
1344    //
1345    if (kPluginUse) {
1346       AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1347       AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1348    }
1349
1350    if (mgr->InitAnalysis()) {
1351      mgr->PrintStatus();
1352      // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
1353      if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
1354        TString alien_workdir = gGrid->GetHomeDirectory();
1355        if (iAODanalysis) alien_workdir += "analysisAOD";
1356        else              alien_workdir += "analysisESD";
1357        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s%s",kGridDataSet.Data(),kGridExtraAliendirLevel.Data());
1358        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1359        printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
1360               alien_workdir.Data(),gridhandler->GetGridOutputDir());
1361
1362        TString dest;
1363        dest = Form("%s/%s/%s.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1364        if(AliAnalysisAlien::FileExists(dest.Data())){
1365          Printf("%s exist on grid removing...",dest.Data());
1366          gGrid->Rm(dest.Data());
1367        }
1368        Printf("%s copy ...",dest.Data());
1369        TFile::Cp(Form("file:%s.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1370
1371
1372        TString dest;
1373        dest = Form("%s/%s/%s_merge.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1374        if(AliAnalysisAlien::FileExists(dest.Data())){
1375          Printf("%s exist on grid removing...",dest.Data());
1376          gGrid->Rm(dest.Data());
1377        }
1378        Printf("%s copy ...",dest.Data());
1379        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1380
1381        dest = Form("%s/%s/%s_merge_final.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
1382        if(AliAnalysisAlien::FileExists(dest.Data())){
1383          Printf("%s exist on grid removing...",dest.Data());
1384          gGrid->Rm(dest.Data());
1385        }
1386        Printf("%s copy ...",dest.Data());
1387        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
1388      }
1389      AliLog::SetGlobalLogLevel(AliLog::kError);
1390      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
1391        TFile * fM = TFile::Open("manager_local.root","RECREATE");
1392        mgr->Write();
1393        fM->Close();
1394      }
1395
1396      // grmpf, aliroot error handler overwrites root
1397      gErrorIgnoreLevel = kErrorIgnoreLevel;
1398      if(gErrorIgnoreLevel>3000) AliLog::SetGlobalLogLevel(AliLog::kFatal);
1399      StartAnalysis(smode, chain);
1400      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
1401        for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
1402          mgr->ProfileTask(i);
1403        }
1404      }
1405      if (!strcmp(plugin_mode, "offline")&&smode=="GRID"){
1406        // Offline mode path files
1407        //       PatchJDL();
1408        //       PatchAnalysisMacro();
1409      }
1410
1411      if (kSaveTrain && smode=="GRID") {
1412        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1413        TString alien_workdir = gGrid->GetHomeDirectory();
1414        if (iAODanalysis) alien_workdir += "analysisAOD";
1415        else              alien_workdir += "analysisESD";
1416        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s%s",kGridDataSet.Data(),kGridExtraAliendirLevel.Data());
1417        //     kGridOutdir = gridhandler->GetGridOutputDir();
1418        printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
1419                 alien_workdir.Data());
1420        if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
1421          gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
1422        if (strcmp(plugin_mode, "test"))
1423          TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
1424      }
1425    }
1426 }
1427
1428 //______________________________________________________________________________
1429 void StartAnalysis(const char *mode, TChain *chain) {
1430 // Start analysis.
1431    Int_t imode = -1;
1432    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1433    if (!strcmp(mode, "LOCAL")) imode = 0;
1434    if (!strcmp(mode, "PROOF")) imode = 1;
1435    if (!strcmp(mode, "GRID"))  imode = 2;
1436    switch (imode) {
1437       case 0:
1438          if (!chain) {
1439             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
1440             return;
1441          }
1442          mgr->StartAnalysis(mode, chain,kNumberOfEvents);
1443          return;
1444       case 1:
1445          if (!kProofDataSet.Length()) {
1446             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
1447             return;
1448          }
1449          mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
1450          return;
1451       case 2:
1452          if (kPluginUse) {
1453             if (!mgr->GetGridHandler()) {
1454                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
1455                return;
1456             }
1457             mgr->StartAnalysis("grid",chain,kNumberOfEvents);
1458          } else {
1459             if (!chain) {
1460                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
1461                return;
1462             }
1463             //            mgr->StartAnalysis(mode, chain);
1464             mgr->StartAnalysis(mode, chain,kNumberOfEvents);
1465          }
1466          return;
1467    }
1468 }
1469
1470 //______________________________________________________________________________
1471 void CheckModuleFlags(const char *mode) {
1472 // Checks selected modules and insure compatibility
1473    Int_t imode = -1;
1474    if (!strcmp(mode, "LOCAL")) imode = 0;
1475    if (!strcmp(mode, "PROOF")) imode = 1;
1476    if (!strcmp(mode, "GRID"))  imode = 2;
1477
1478
1479    if (kUseCPAR) {
1480      kPluginAliRootVersion    = ""; // NO aliroot if we use CPAR
1481    }
1482
1483    if (imode==1) {
1484       if (!kUsePAR) {
1485          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
1486          kUsePAR = kTRUE;
1487       }
1488    }
1489    if (imode != 2) {
1490       ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
1491       kPluginUse = kFALSE;
1492    }
1493
1494
1495    if(!kIsMC){
1496      // switch off anthin related to MC
1497      kUseMC = 0;
1498      kUseAODMC = 0;
1499      kUseTR = kFALSE;
1500    }
1501
1502    // Decide if we have PbPb
1503    if(kGridDataSet.CompareTo("LHC10h")==0||kGridDataSet.Contains("LHC10h")) {
1504      Printf("Using settings for Pb+Pb");
1505      kIsPbPb = true;
1506    }
1507
1508
1509
1510    if (iAODanalysis) {
1511    // AOD analysis
1512       if (kUseMC)
1513          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
1514       if (kUseAODTags)
1515          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
1516       kUseMC = kFALSE;
1517       kUseTR = kFALSE;
1518       kUseAODTags = kFALSE;
1519       if (iESDfilter)
1520          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
1521       iESDfilter   = 0;
1522       if (iPhysicsSelection)
1523          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
1524       iPhysicsSelection   = 0;
1525       if (!iAODhandler) {
1526          if (iJETAN)
1527             ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
1528          iJETAN = 0;
1529          iDIJETAN = 0;
1530       }
1531       // Disable tasks that do not work yet on AOD data
1532       if(iPWG4JCORRAN)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 JCORRAN disabled in analysis on AOD's");
1533       iPWG4JCORRAN = 0;
1534       if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
1535       iPWG4PtQAMC        = 0;
1536       if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
1537       iPWG4PtQATPC        = 0;
1538       if( iPWG4Cosmics)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Comics disabled in analysis on AOD's");
1539       iPWG4Cosmics        = 0;
1540
1541       if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
1542       iPWG4KMeans       = 0;
1543       if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
1544       iPWG4JetCorr = 0;
1545       if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
1546       iPWG4PartCorr = 0;
1547       if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
1548       iPWG4CaloQA = 0;
1549       if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
1550       iPWG4Tagged = 0;
1551       if (iPWG4omega3pi)
1552         ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
1553       iPWG4omega3pi = 0;
1554       if(iPWG1QASym)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG1 QA Sym disabled in analysis on AOD's");
1555       if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
1556       iPWG4GammaConv = 0;
1557       iPWG1QASym     = 0;
1558       iCentralitySelection = 0;
1559    } else {
1560    // ESD analysis
1561
1562      if(kIsPbPb){
1563        iCentralitySelection = 1;
1564      }
1565
1566      if (!kUseMC){
1567        kUseTR = kFALSE;
1568
1569        if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
1570        kUseKinefilter = kFALSE;
1571        if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
1572        iPWG4PtQAMC        = 0;
1573        if( iPWG4CorrectionsUE)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 CorrectionsUE disabled in analysis without MC");
1574        iPWG4CorrectionsUE = 0;
1575      }
1576      if (iJETAN){
1577        iESDfilter=1;
1578      }
1579       if (!iESDfilter){
1580         kUseKinefilter = kFALSE;
1581         kUseMuonfilter = kFALSE;
1582       }
1583       if(!iJETAN){
1584         iPWG4JetSpectrum = iPWG4UE =  iPWG4CorrectionsUE = iPWG4ThreeJets = iPWG4QGSep = iDIJETAN = 0;
1585       }
1586    }
1587    iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4UE||iPWG4LeadingUE||iPWG4PtQAMC||iPWG4PtTrackQA||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4Cosmics||iPWG4ThreeJets||iPWG4QGSep||iPWG4JetChem||iPWG4Minijet||iPWG4Fragmentation;
1588    iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
1589    iPWG4GammaConvLib = iPWG4GammaConv||iPWG4CaloConv;
1590
1591
1592    iEMCUtilLibs = iPWG4JetTasks||iPWG4PartCorrLibs||iPWG4JCORRAN||iPWG4GammaConvLib||iJETAN;
1593    iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
1594
1595    if (iESDfilter) {iAODhandler=1;}
1596    if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
1597    if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
1598
1599
1600
1601 }
1602
1603 //______________________________________________________________________________
1604 Bool_t Connect(const char *mode) {
1605 // Connect <username> to the back-end system.
1606    Int_t imode = -1;
1607    if (!strcmp(mode, "LOCAL")) imode = 0;
1608    if (!strcmp(mode, "PROOF")) imode = 1;
1609    if (!strcmp(mode, "GRID"))  imode = 2;
1610    TString username = gSystem->Getenv("alien_API_USER");
1611    switch (imode) {
1612       case 0:
1613          break;
1614       case 1:
1615          if  (!username.Length()) {
1616             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1617                            1. Have called: alien-token-init <username>\n \
1618                            2. Have called: >source /tmp/gclient_env_$UID");
1619             return kFALSE;
1620          }
1621          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
1622                 username.Data(), kProofCluster.Data());
1623          gEnv->SetValue("XSec.GSI.DelegProxy", "2");
1624 //         TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
1625          TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
1626          if (!gProof) {
1627             if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
1628                ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
1629             return kFALSE;
1630          }
1631          if(kProofClearPackages)gProof->ClearPackages();
1632
1633          if(kProofSaveToAlien){
1634            TGrid::Connect("alien://");
1635            if (gGrid) {
1636              TString homedir = gGrid->GetHomeDirectory();
1637              TString workdir = homedir + kTrainName;
1638              if (!gGrid->Cd(workdir)) {
1639                gGrid->Cd(homedir);
1640                if (gGrid->Mkdir(workdir)) {
1641                  gGrid->Cd(kTrainName);
1642                  ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
1643                }
1644              }
1645              gGrid->Mkdir("proof_output");
1646              gGrid->Cd("proof_output");
1647              kProofOutdir = Form("alien://%s", gGrid->Pwd());
1648            }
1649          }
1650          break;
1651       case 2:
1652          if  (!username.Length()) {
1653             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1654                            1. Have called: alien-token-init <username>\n \
1655                            2. Have called: >source /tmp/gclient_env_$UID");
1656             return kFALSE;
1657          }
1658          if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
1659             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
1660                            "When using the AliEn plugin it is preferable to define the \
1661                            variable alien_CLOSE_SE in your environment.");
1662             return kFALSE;
1663          }
1664          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
1665                 username.Data());
1666          TGrid::Connect("alien://");
1667          if (!gGrid || !gGrid->IsConnected()) return kFALSE;
1668          break;
1669       default:
1670          ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
1671          return kFALSE;
1672    }
1673    ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
1674    return kTRUE;
1675 }
1676
1677 //______________________________________________________________________________
1678 Bool_t LoadCommonLibraries(const char *mode)
1679 {
1680    if (!gSystem->Getenv("ALICE_ROOT")) {
1681       ::Error("AnalysisTrainPWG4Jets.C", "Analysis train requires that ALICE_ROOT is set to pick up Configurations");
1682       return kFALSE;
1683    }
1684
1685    // Load common analysis libraries.
1686    Int_t imode = -1;
1687    if (!strcmp(mode, "LOCAL")) imode = 0;
1688    if (!strcmp(mode, "PROOF")) imode = 1;
1689    if (!strcmp(mode, "GRID"))  imode = 2;
1690    Bool_t success = kTRUE;
1691    // ROOT libraries
1692    gSystem->Load("libTree.so");
1693    gSystem->Load("libGeom.so");
1694    gSystem->Load("libVMC.so");
1695    gSystem->Load("libPhysics.so");
1696    gSystem->Load("libMinuit.so");
1697
1698    // Load framework classes. Par option ignored here.
1699    switch (imode) {
1700       case 0:
1701       case 2:
1702          if (kUseCPAR) {
1703             success &= LoadLibrary("STEERBase", mode, kTRUE);
1704             success &= LoadLibrary("ESD", mode, kTRUE);
1705             success &= LoadLibrary("AOD", mode, kTRUE);
1706             success &= LoadLibrary("ANALYSIS", mode, kTRUE);
1707             success &= LoadLibrary("OADB", mode, kTRUE);
1708             success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
1709             success &= LoadLibrary("ROOTFILES", mode, kTRUE);
1710             //            success &= LoadLibrary("EventMixing", mode,kTRUE);
1711             success &= LoadLibrary("CORRFW", mode, kTRUE);
1712          } else {
1713             success &= LoadLibrary("libSTEERBase.so", mode);
1714             success &= LoadLibrary("libESD.so", mode);
1715             success &= LoadLibrary("libAOD.so", mode);
1716             success &= LoadLibrary("libANALYSIS.so", mode);
1717             success &= LoadLibrary("libOADB.so", mode, kTRUE);
1718             success &= LoadLibrary("libANALYSISalice.so", mode);
1719             //            success &= LoadLibrary("libEventMixing.so", mode);
1720             success &= LoadLibrary("libCORRFW.so", mode);
1721             gROOT->ProcessLine(".include $ALICE_ROOT/include");
1722          }
1723          break;
1724       case 1:
1725          Int_t ires = -1;
1726          if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
1727          if (ires < 0) {
1728             success &= LoadLibrary("STEERBase", mode);
1729             success &= LoadLibrary("ESD", mode);
1730             success &= LoadLibrary("AOD", mode);
1731             success &= LoadLibrary("ANALYSIS", mode);
1732             success &= LoadLibrary("ANALYSISalice", mode);
1733             success &= LoadLibrary("EventMixing", mode);
1734             success &= LoadLibrary("CORRFW", mode);
1735          } else {
1736             ires = gProof->EnablePackage(kProofAFversion);
1737             if (ires<0) success = kFALSE;
1738             success &= LoadLibrary("CORRFW", mode);
1739          }
1740          break;
1741       default:
1742          ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
1743          return kFALSE;
1744    }
1745    if (success) {
1746       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    SUCCESS");
1747       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
1748               gSystem->GetIncludePath());
1749    } else {
1750       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    FAILED");
1751    }
1752
1753    return success;
1754 }
1755
1756 //______________________________________________________________________________
1757 Bool_t LoadAnalysisLibraries(const char *mode)
1758 {
1759 // Load common analysis libraries.
1760   Bool_t success = kTRUE;
1761   if (useTender) {
1762       if (!LoadLibrary("TENDER", mode, kTRUE) ||
1763           !LoadLibrary("TENDERSupplies", mode, kTRUE)) return kFALSE;
1764    }
1765    if (iESDfilter) {
1766      /*
1767       if (!LoadLibrary("PWG3base", mode, kTRUE) ||
1768           !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
1769      */
1770    }
1771    // JETAN
1772    if (iJETANLib) {
1773      // this part needs some rework in case we do not need the fastjed finders for processing
1774      if(iEMCUtilLibs){
1775        if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
1776            !LoadLibrary("PHOSUtils", mode, kTRUE)) return kFALSE;
1777      }
1778      if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
1779      if (!strcmp(mode, "PROOF")){
1780        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
1781        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
1782        // problem when loading siscone copiled with different gcc version??
1783        // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
1784        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
1785      }
1786      if(!kUsePAR){
1787        if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
1788        if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
1789        if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
1790        if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
1791      }
1792      else{
1793        // par files plus FASTJET needs some extra work... need to change
1794        // the loading sequence in the auto generated .C file
1795        if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
1796        if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
1797        if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
1798        if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
1799      }
1800      if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
1801    }
1802    if(iPWG4JetTasks){
1803      if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
1804    }
1805
1806    if(iPWG1QASym){
1807      if (!LoadSource(Form("%s/PWG1/AliAnalysisTaskQASym.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1808    }
1809    if(iPWG4TmpSourceSara){
1810      if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1811      if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskEta.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1812    }
1813
1814    if (iPWG4PartCorrLibs) {
1815       if (!LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
1816           !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
1817    }
1818    if(iPWG4JCORRAN){
1819      // PWG4 particle correlations
1820      if(!LoadLibrary("PWG4JCORRAN",mode,kTRUE))return kFALSE;
1821    }
1822    if (iPWG4JetCorr) {
1823      if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
1824    }
1825    if (iPWG4omega3pi) {
1826      if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
1827    }
1828    if (iPWG4GammaConvLib) {
1829       if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
1830    }
1831
1832    ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries:   SUCCESS");
1833    return kTRUE;
1834 }
1835
1836 //______________________________________________________________________________
1837 Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
1838 {
1839 // Load a module library in a given mode. Reports success.
1840    Int_t imode = -1;
1841    Int_t result;
1842    TString smodule(module);
1843    if (!strcmp(mode, "LOCAL")) imode = 0;
1844    if (!strcmp(mode, "PROOF")) imode = 1;
1845    if (!strcmp(mode, "GRID"))  imode = 2;
1846    TString mod(module);
1847    if (!mod.Length()) {
1848       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1849       return kFALSE;
1850    }
1851    // If a library is specified, just load it
1852    if (smodule.EndsWith(".so")) {
1853       mod.Remove(mod.Index(".so"));
1854       result = gSystem->Load(mod);
1855       if (result < 0) {
1856          ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1857          return kFALSE;
1858       }
1859       if (rec) anaLibs += Form("%s.so ",mod.Data());
1860       if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
1861       return kTRUE;
1862    }
1863    // Check if the library is already loaded
1864    if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1865       return kTRUE;
1866    switch (imode) {
1867       case 0:
1868       case 2:
1869          if (kUsePAR) {
1870             result = SetupPar(module);
1871             if (rec) anaPars += Form("%s.par ", module);
1872          } else {
1873             result = gSystem->Load(Form("lib%s.so", module));
1874             if (rec) anaLibs += Form("lib%s.so ", module);
1875          }
1876          break;
1877       case 1:
1878         if(!gSystem->AccessPathName(module)){
1879           ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1880           gSystem->Exec(Form("rm -rf %s",module));
1881         }
1882          result = gProof->UploadPackage(module);
1883          if (result<0) {
1884             result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1885             if (result<0) {
1886                ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1887                return kFALSE;
1888             }
1889          }
1890          result = gProof->EnablePackage(module);
1891          break;
1892       default:
1893          return kFALSE;
1894    }
1895    if (result < 0) {
1896       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1897       return kFALSE;
1898    }
1899    return kTRUE;
1900 }
1901
1902
1903
1904 //______________________________________________________________________________
1905 Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1906 {
1907 // Load a module library in a given mode. Reports success.
1908    Int_t imode = -1;
1909    Int_t result = -1;
1910    if (!strcmp(mode, "LOCAL")) imode = 0;
1911    if (!strcmp(mode, "PROOF")) imode = 1;
1912    if (!strcmp(mode, "GRID"))  imode = 2;
1913    TString ssource(source);
1914    TString basename = gSystem->BaseName(ssource.Data());
1915    if (!ssource.Length()) {
1916       ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1917       return kFALSE;
1918    }
1919    // we have a source code so compile it
1920    if (ssource.EndsWith(".cxx")) {
1921      // need to copy it here other wise the path is also used on grid...
1922      ssource.Remove(ssource.Index(".cxx"));
1923      basename.Remove(basename.Index(".cxx"));
1924      Printf("LoadSources:: Copying...  path %s{cxx,h}",ssource.Data());
1925      gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1926      gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1927      // Path to code
1928      // only needed for local compilation, in grid and proof mode
1929      // the task headers are uploaded
1930      //     path.Remove(path.Index(gSystem->BaseName(path.Data())));
1931      // Printf("LoadSources:: Including path %s",path.Data());
1932      //  if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1933      Printf("LoadSources:: Loading...  path %s",basename.Data());
1934      switch (imode) {
1935      case 0:
1936        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1937        break;
1938      case 1:
1939        result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
1940        break;
1941      case 2:
1942        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1943        if (rec){
1944          // what we want to compile
1945          anaSources += Form("%s.cxx ",basename.Data());
1946          // what we need as input...
1947          anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1948        }
1949        break;
1950      default:
1951        return kFALSE;
1952      }
1953    }
1954    if (result < 0) {
1955       ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1956       return kFALSE;
1957    }
1958    return kTRUE;
1959 }
1960
1961
1962 //______________________________________________________________________________
1963 TChain *CreateChain(const char *mode, const char *plugin_mode)
1964 {
1965 // Create the input chain
1966    Int_t imode = -1;
1967    if (!strcmp(mode, "LOCAL")) imode = 0;
1968    if (!strcmp(mode, "PROOF")) imode = 1;
1969    if (!strcmp(mode, "GRID"))  imode = 2;
1970    TChain *chain = NULL;
1971    // Local chain
1972    switch (imode) {
1973       case 0:
1974          if (iAODanalysis) {
1975             if (!kLocalXMLDataset.Length()) {
1976                // Local AOD
1977                chain = new TChain("aodTree");
1978                TString line;
1979                ifstream in;
1980                in.open(kLocalDataList.Data());
1981                Int_t ic = 0;
1982                while (in.good()) {
1983                  in >> line;
1984                  if (line.Length() == 0) continue;
1985                  Printf("%d adding %s",ic,line.Data());
1986                  chain->Add(line.Data());
1987                  ic++;
1988                }
1989             } else {
1990                // Interactive AOD
1991                chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
1992             }
1993          } else {
1994            if (!kLocalXMLDataset.Length()) {
1995              // Local ESD
1996              chain = new TChain("esdTree");
1997              TString line;
1998              ifstream in;
1999              in.open(kLocalDataList.Data());
2000              while (in.good()) {
2001                in >> line;
2002                if (line.Length() == 0) continue;
2003                cout << " line = " << line << endl;
2004                chain->Add(line.Data());
2005              }
2006            } else {
2007              // Interactive ESD
2008                chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
2009            }
2010          }
2011          break;
2012       case 1:
2013          break;
2014       case 2:
2015          if (kPluginUse) {
2016 //            AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
2017 //            AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
2018          } else {
2019             TString           treeName = "esdTree";
2020             if (iAODanalysis) treeName = "aodTree";
2021             chain = CreateChainSingle("wn.xml", treeName);
2022          }
2023          break;
2024       default:
2025    }
2026    if (chain && chain->GetNtrees()) return chain;
2027    return NULL;
2028 }
2029
2030 //______________________________________________________________________________
2031 TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
2032 {
2033    printf("*******************************\n");
2034    printf("*** Getting the ESD Chain   ***\n");
2035    printf("*******************************\n");
2036    TAlienCollection * myCollection  = TAlienCollection::Open(xmlfile);
2037
2038    if (!myCollection) {
2039       ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
2040       return NULL ;
2041    }
2042
2043    TChain* chain = new TChain(treeName);
2044    myCollection->Reset() ;
2045    while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
2046    chain->ls();
2047    return chain;
2048 }
2049
2050 //______________________________________________________________________________
2051 Int_t SetupPar(char* pararchivename)
2052 {
2053    if (!pararchivename || !strlen(pararchivename)) return -1;
2054    char processline[1024];
2055    if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
2056       if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
2057          ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
2058         TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
2059                   Form("%s.par",pararchivename));
2060       } else {
2061          ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
2062          return -1;
2063       }
2064    }
2065    if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
2066    gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
2067
2068    TString ocwd = gSystem->WorkingDirectory();
2069    if (!gSystem->ChangeDirectory(pararchivename)) return -1;
2070
2071    // check for BUILD.sh and execute
2072    if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
2073       printf("*******************************\n");
2074       printf("*** Building PAR archive    ***\n");
2075       printf("*******************************\n");
2076       if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
2077          Error("runProcess","Cannot Build the PAR Archive! - Abort!");
2078          return -1;
2079       }
2080    }
2081
2082         // check for SETUP.C and execute
2083         if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
2084             printf("*******************************\n");
2085             printf("*** Setup PAR archive       ***\n");
2086             printf("*******************************\n");
2087             gROOT->Macro("PROOF-INF/SETUP.C");
2088         }
2089         if (!gSystem->ChangeDirectory(ocwd.Data())){
2090           Error("Change back directory",Form("Cannot change to %s",ocwd.Data()));
2091           return -1;
2092         }
2093    return 0;
2094 }
2095
2096 //______________________________________________________________________________
2097 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
2098 {
2099 // Check if user has a valid token, otherwise make one. This has limitations.
2100 // One can always follow the standard procedure of calling alien-token-init then
2101 //   source /tmp/gclient_env_$UID in the current shell.
2102 //   if (!AliAnalysisGrid::CreateToken()) return NULL;
2103    AliAnalysisAlien *plugin = new AliAnalysisAlien();
2104 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
2105    plugin->SetRunMode(plugin_mode);
2106    plugin->SetCheckCopy(kFALSE);
2107    if (kPluginUseProductionMode) plugin->SetProductionMode();
2108    plugin->SetJobTag(kJobTag);
2109    plugin->SetNtestFiles(1);
2110 //   plugin->SetPreferedSE("ALICE::NIHAM::File");
2111 // Set versions of used packages
2112    plugin->SetAPIVersion("V1.1x");
2113    //   plugin->SetAPIVersion("V1.0x");
2114 //   plugin->SetAPIVersion("V2.4");
2115    plugin->SetROOTVersion(kPluginRootVersion);
2116    plugin->SetAliROOTVersion(kPluginAliRootVersion);
2117 // Declare input data to be processed.
2118 // Method 1: Create automatically XML collections using alien 'find' command.
2119 // Define production directory LFN
2120    plugin->SetGridDataDir(kGridDatadir.Data());
2121 // Set data search pattern
2122    if (iAODanalysis) plugin->SetDataPattern(Form(" %s/*/*AliAOD.root",kGridPassPattern.Data()));
2123    else              plugin->SetDataPattern(Form(" %s/*/*AliESDs.root",kGridPassPattern.Data()));
2124 // ...then add run numbers to be considered
2125 //   plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
2126    for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
2127      Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
2128      plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
2129    }
2130
2131    if(kGridLocalRunList.Length()>0){
2132      ifstream in1;
2133      in1.open(kGridLocalRunList.Data());
2134      int iRun = 0;
2135      int icount = 0;
2136      Int_t nRun = 0;
2137      // just use run numbers, negatives will be excluded
2138      while(in1>>iRun){
2139        if(iRun>=0){
2140          if(iRun>=0&&nRun>=kGridOffsetRunFromList&&(nRun<kGridMaxRunsFromList)){
2141            Printf("AnalysisTrainPWG4Jets Adding run number from File %d: %s",nRun,Form(kGridRunPattern.Data(),iRun));
2142            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
2143
2144          }
2145          else{
2146            Printf("AnalysisTrainPWG4Jets Skipping run number from File %d: %d",nRun, iRun);
2147          }
2148          nRun++;
2149        }
2150        else{
2151          Printf("AnalysisTrainPWG4Jets Skipping run number from File %d: %d",nRun, iRun);
2152        }
2153      }
2154    }
2155 // Method 2: Declare existing data files (raw collections, xml collections, root file)
2156 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
2157 // XML collections added via this method can be combined with the first method if
2158 // the content is compatible (using or not tags)
2159 //   plugin->AddDataFile("tag.xml");
2160 //   plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
2161 // Define alien work directory where all files will be copied. Relative to alien $HOME.
2162    TString alien_workdir = "";
2163
2164    if (iAODanalysis)  alien_workdir += "analysisAOD";
2165    else               alien_workdir += "analysisESD";
2166        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s%s",kGridDataSet.Data(),kGridExtraAliendirLevel.Data());
2167    plugin->SetGridWorkingDir(alien_workdir.Data());
2168
2169    // Declare alien output directory. Relative to working directory.
2170    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
2171    plugin->SetGridOutputDir(kGridOutdir);
2172
2173    // Add external packages
2174    plugin->AddExternalPackage("boost::v1_43_0");
2175    plugin->AddExternalPackage("cgal::v3.6");
2176    plugin->AddExternalPackage("fastjet::v2.4.2");
2177
2178
2179    // set extra libs before par file compilation
2180    anaLibs += kGridExtraFiles;
2181    anaLibs     = anaLibs.Strip();
2182    Printf("anaLibs %s",anaLibs.Data());
2183    Printf("anaLibsExtra %s",anaLibsExtra.Data());
2184
2185    if (anaLibs.Length())          plugin->SetAdditionalLibs(anaLibs.Data());
2186    if (anaLibsExtra.Length())     plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
2187
2188    TString ana_sources = "";
2189    TString ana_add = "";
2190    if (kUsePAR && anaPars.Length()) {
2191       printf("%s\n", anaPars.Data());
2192       TObjArray *arr;
2193       TObjString *objstr;
2194       arr = anaPars.Tokenize(" ");
2195       TIter next(arr);
2196       while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
2197       delete arr;
2198    }
2199
2200 // Declare the analysis source files names separated by blancs. To be compiled runtime
2201 // using ACLiC on the worker nodes.
2202    ana_sources = anaSources.Strip();
2203 // Declare all libraries (other than the default ones for the framework. These will be
2204 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
2205
2206    if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
2207    plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
2208    // Declare the output file names separated by blancs.
2209    // (can be like: file.root or file.root@ALICE::Niham::File)
2210    plugin->SetMergeExcludes(kGridMergeExclude);
2211    plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
2212    plugin->SetNrunsPerMaster(kGridRunsPerMaster);
2213    plugin->SetMergeViaJDL(kPluginMergeViaJDL);
2214    // Use fastread option
2215    plugin->SetFastReadOption(kPluginFastReadOption);
2216    // UseOverwrite mode
2217    plugin->SetOverwriteMode(kPluginOverwriteMode);
2218    // Optionally define the files to be archived.
2219    //   plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
2220    plugin->SetOutputToRunNo(kPluginOutputToRunNumber);     // write the output to subdirs named after run number
2221
2222    // Put default output files to archive
2223    TString listhists = "";
2224    TString listaods  = "";
2225    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
2226    TIter next(mgr->GetOutputs());
2227    AliAnalysisDataContainer *output;
2228    while ((output=(AliAnalysisDataContainer*)next())) {
2229       const char *filename = output->GetFileName();
2230       if (!(strcmp(filename, "default"))) {
2231         if (!mgr->GetOutputEventHandler()) continue;
2232          filename = mgr->GetOutputEventHandler()->GetOutputFileName();
2233          if (listaods.Length()) listaods += " ";
2234          listaods += filename;
2235       } else {
2236         if(!listhists.Contains(filename)){
2237           if (listhists.Length()) listhists += " ";
2238           listhists += filename;
2239         }
2240       }
2241    }
2242
2243    if (mgr->GetExtraFiles().Length()) {
2244      if (listaods.Length()) listaods += " ";
2245      listaods += mgr->GetExtraFiles();
2246    }
2247
2248    // if we do not fill the aod we do not need to store it
2249    //   kGridMergeExclude = listaods;
2250
2251    if(kSaveAOD>=0){
2252      TString outputFiles =  "";
2253      outputFiles += mgr->GetExtraFiles();
2254      if (listhists.Length()) outputFiles += " ";
2255      outputFiles += listhists;
2256      plugin->SetDefaultOutputs(kFALSE);
2257      Printf("%s:%d Starting with the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
2258      // remove
2259      // no harm done when we try to remove something that is not there :)
2260      if(!(kSaveAOD&(1<<0))){
2261        outputFiles.ReplaceAll("AliAOD.root ","");
2262        listaods.ReplaceAll("AliAOD.root ","");
2263      }
2264      if(!(kSaveAOD&(1<<1))){
2265        if(kDeltaAODJetName.Length())outputFiles.ReplaceAll(kDeltaAODJetName.Data(),"");
2266        if(kDeltaAODJetName.Length())listaods.ReplaceAll(kDeltaAODJetName.Data(),"");
2267
2268      }
2269      if(!(kSaveAOD&(1<<2))){
2270        if(kDeltaAODPartCorrName.Length())outputFiles.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
2271        if(kDeltaAODPartCorrName.Length())listaods.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
2272      }
2273      if(!(kSaveAOD&(1<<3))){
2274        if(kDeltaAODJCORRANName.Length())outputFiles.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
2275        if(kDeltaAODJCORRANName.Length())listaods.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
2276      }
2277
2278      //
2279      plugin->SetDefaultOutputs(kFALSE);
2280      Printf("%s:%d Saving the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
2281      plugin->SetOutputFiles(outputFiles.Data());
2282    }
2283
2284    TString outputArchive;
2285    outputArchive = Form("log_archive.zip:std*@%s","disk=1");
2286    listaods.ReplaceAll(" ", ",");
2287    listhists.ReplaceAll(" ", ",");
2288    if (listhists.Length()){
2289      outputArchive += " ";
2290      outputArchive += "root_archive.zip:";
2291      outputArchive += listhists;
2292      if (listaods.Length()){
2293        outputArchive += ",";
2294        outputArchive += listaods;
2295      }
2296      outputArchive += Form("@%s", kGridOutputStorages.Data());
2297    }
2298    else{
2299
2300      if (listaods.Length()){
2301        // we have only aod'ish output
2302        outputArchive += " ";
2303        outputArchive += "root_archive.zip:";
2304        outputArchive += listaods;
2305        outputArchive += Form("@%s", kGridOutputStorages.Data());
2306      }
2307      else{
2308        // no other outputs than std..
2309       ::Fatal("AnalysisTrainPWG4Jets", "No task output !");
2310      }
2311    }
2312
2313    plugin->SetDefaultOutputs(kFALSE);
2314    plugin->SetOutputArchive(outputArchive);
2315
2316
2317    // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
2318    plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
2319    // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
2320    plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
2321    // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
2322    //   plugin->SetMaxInitFailed(5);
2323    // Optionally resubmit threshold.
2324    // plugin->SetMasterResubmitThreshold(90);
2325    // Optionally set time to live (default 30000 sec)
2326    plugin->SetTTL(80000); // 22h...
2327    // Optionally set input format (default xml-single)
2328    plugin->SetInputFormat("xml-single");
2329    // Optionally modify the name of the generated JDL (default analysis.jdl)
2330    plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
2331    // Optionally modify the executable name (default analysis.sh)
2332    plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
2333    // Optionally modify job price (default 1)
2334    plugin->SetPrice(1);
2335    // Optionally modify split mode (default 'se')
2336    plugin->SetSplitMode("se");
2337    return plugin;
2338 }
2339
2340 //______________________________________________________________________________
2341 void WriteConfig()
2342 {
2343 // Write train configuration in a file. The file name has the format:
2344 // train_[trainName]_ddMonthyyyy_time.C
2345    if (kUseDate) {
2346       gSystem->Exec("date +%d%b%Y_%Hh%M > date.tmp");
2347       ifstream fdate("date.tmp");
2348       if (!fdate.is_open()) {
2349          ::Error("AnalysisTrainPWG4Jets.C::Export","Could not generate file name");
2350          return;
2351       }
2352       const char date[64];
2353       fdate.getline(date,64);
2354       fdate.close();
2355       gSystem->Exec("rm date.tmp");
2356       kTrainName = Form("train_%s_%s", kTrainName.Data(), date);
2357    } else {
2358       kTrainName = Form("train_%s", kTrainName.Data());
2359    }
2360    TString cdir = gSystem->WorkingDirectory();
2361    gSystem->MakeDirectory(kTrainName);
2362    gSystem->ChangeDirectory(kTrainName);
2363    ofstream out;
2364    out.open(Form("%sConfig.C",kTrainName.Data()), ios::out);
2365    if (out.bad()) {
2366       ::Error("AnalysisTrainPWG4Jets.C::Export", "Cannot open ConfigTrain.C for writing");
2367       return;
2368    }
2369    out << "{" << endl;
2370    out << "   kTrainName      = " << "\"" << kTrainName.Data() << "\";" << endl;
2371    out << "   kProofCluster   = " << "\"" << kProofCluster.Data() << "\";" << endl;
2372    out << "   kProofUseAFPAR        = " << kProofUseAFPAR << ";" << endl;
2373    if (kProofUseAFPAR)
2374       out << "   kProofAFversion       = " << kProofAFversion.Data() << ";" << endl;
2375    out << "   kProofDataSet   = " << "\"" << kProofDataSet.Data() << "\";" << endl;
2376    out << "   kPluginUse       = " << kPluginUse << ";" << endl;
2377    out << "   kUsePAR          = " << kUsePAR << ";" << endl;
2378    out << "   kUseCPAR         = " << kUseCPAR << ";" << endl;
2379    out << "   kPluginRootVersion    = " << "\"" << kPluginRootVersion.Data() << "\";" << endl;
2380    out << "   kPluginAliRootVersion = " << "\"" << kPluginAliRootVersion.Data() << "\";" << endl;
2381    out << "   kGridDatadir   = " << "\"" << kGridDatadir.Data() << "\";" << endl;
2382    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
2383    out << "   kGridOutdir    = " << "\"" << kGridOutdir.Data() << "\";" << endl;
2384    out << "   kGridMaxMergeFiles   = " << kGridMaxMergeFiles << ";" << endl;
2385    out << "   kGridMergeExclude    = " << "\"" << kGridMergeExclude.Data() << "\";" << endl;
2386    out << "   kGridRunsPerMaster  = " << kGridRunsPerMaster << ";" << endl;
2387    out << "   kGridFilesPerJob    = " << kGridFilesPerJob << ";" << endl;
2388    out << "   kGridRunRange[0]    = " << kGridRunRange[0] << ";" << endl;
2389    out << "   kGridRunRange[1]    = " << kGridRunRange[1] << ";" << endl;
2390    out << "   kUseDebug          = " << kUseDebug << ";" << endl;
2391    out << "   kUseMC           = " << kUseMC << ";" << endl;
2392    out << "   kUseESDTags         = " << kUseESDTags << ";" << endl;
2393    out << "   kUseKinefilter      = " << kUseKinefilter << ";" << endl;
2394    out << "   kUseTR           = " << kUseTR << ";" << endl;
2395    out << "   kUseAODTags      = " << kUseAODTags << ";" << endl;
2396    out << "   kSaveTrain       = " << "kFALSE;" << endl << endl;
2397    out << "   // Analysis modules" << endl;
2398    out << "   iAODanalysis    = " << iAODanalysis << ";" << endl;
2399    out << "   iAODhandler     = " << iAODhandler << ";" << endl;
2400    out << "   iESDfilter      = " << iESDfilter << ";" << endl;
2401    out << "   iJETAN          = " << iJETAN << ";" << endl;
2402    out << "// Configuration fot the wagons" << endl;
2403    out << "}" << endl;
2404    ::Info("AnalysisTrainPWG4Jets.C::WriteConfig", "Train configuration wrote to file %s", Form("config_%s.C", kTrainName.Data()));
2405    gSystem->ChangeDirectory(cdir);
2406 }
2407
2408 //______________________________________________________________________________
2409 Bool_t LoadConfig(const char *filename)
2410 {
2411 // Read train configuration from file
2412    if (gSystem->AccessPathName(filename)) {
2413       ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
2414       return kFALSE;
2415    }
2416    gROOT->ProcessLine(Form(".x %s", filename));
2417    ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
2418    return kTRUE;
2419 }
2420
2421 Bool_t PatchJDL(){
2422   Printf(">>> Patching JDL");
2423   AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
2424   AliAnalysisAlien*    gridHandler = (AliAnalysisAlien*)mgr->GetGridHandler();
2425   TGridJDL *jdl = gridHandler->GetGridJDL();
2426   if(iJETAN)jdl->AddToPackages("fastjet","v2.4.0");
2427   gridHandler->WriteJDL(kFALSE);
2428   Printf("<<<  Patching JDL");
2429   return kTRUE;
2430 }
2431
2432 Bool_t PatchAnalysisMacro(){
2433   Printf(">>> Patching AnalysisMacro");
2434   gSystem->Exec(Form("mv %s.C %s.C_tmp",kTrainName.Data(),kTrainName.Data()));
2435
2436   ifstream in1;
2437   in1.open(Form("%s.C_tmp", kTrainName.Data()));
2438   char cLine[250];
2439   TString st;
2440   while(in1.getline(cLine,250)){
2441     st += cLine;
2442     st += "\n";
2443   }
2444   Int_t index= -1;
2445   index = st.Index("gSystem->Load(\"libPhysics\");");
2446   index += strlen("gSystem->Load(\"libPhysics\");");
2447   /*
2448     TObjArray *arr;
2449     TObjString *objstr;
2450     arr = anaLibs.Tokenize(" ");
2451     TIter next(arr);
2452
2453     add += "\n\n // added by CKB \n";
2454     while ((objstr=(TObjString*)next())){
2455       if(objstr->GetString().Contains("PWG3"))continue;
2456       if(objstr->GetString().EndsWith(".so"))add += Form("gSystem->Load(\"%s\");\n",objstr->GetString().Data());
2457     }
2458     delete arr;
2459     */
2460     //    add += Form("AliLog::SetGlobalLogLevel(%d);\n",AliLog::GetGlobalLogLevel());
2461   TString add = "";
2462
2463   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2464   add += "\n\n // added by CKB \n";
2465   if(kErrorIgnoreLevel>0)add += Form("gErrorIgnoreLevel = %d;\n",kErrorIgnoreLevel);
2466   add += "\n gSystem->AddIncludePath(\"./\"); \n";
2467   add += "\n gSystem->SetFPEMask(); \n";
2468
2469
2470   if(gGrid&&kPluginAliRootVersion.Length()==0){
2471     /*
2472     add += "\n // Dirty hack for TRD reference data \n";
2473     add += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2474     add += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2475     add += "\"); \n";
2476     */
2477   }
2478
2479   add += "// BKC \n\n";
2480   st.Insert(index,add.Data());
2481
2482   if(kUseDebug){
2483     //    st.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2484   }
2485
2486   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2487     index = st.Index("gSystem->AddIncludePath(\"-I$"); // uncommen $ALICE_ROOT include for par files
2488     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2489     st.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2490   }
2491
2492   if(AliLog::GetGlobalLogLevel()==AliLog::kFatal){
2493     index = st.Index("AliLog::SetGlobal"); // ncomment setting of log level, do my own
2494     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2495     st.Insert(index,"AliLog::SetGlobalLogLevel(AliLog::kFatal);// CKB \n  // CKB comment out for own setting \n  //");
2496   }
2497
2498   ofstream out;
2499   out.open(Form("%s.C", kTrainName.Data()));
2500   if (out.bad()) {
2501     return kFALSE;
2502   }
2503   out << st << endl;
2504   Printf("<<< Patching AnalysisMacro");
2505
2506
2507
2508
2509
2510   Printf(">>> Patching Merge Macro");
2511   gSystem->Exec(Form("mv %s_merge.C %s_merge.C_tmp",kTrainName.Data(),kTrainName.Data()));
2512
2513   ifstream in2;
2514   in2.open(Form("%s_merge.C_tmp", kTrainName.Data()));
2515   TString st2;
2516   while(in2.getline(cLine,250)){
2517     st2 += cLine;
2518     st2 += "\n";
2519   }
2520   index = st2.Index("gSystem->Load(\"libPhysics\");");
2521   index += strlen("gSystem->Load(\"libPhysics\");");
2522   TString add2 = "";
2523   add2 += "\n gSystem->AddIncludePath(\"./\"); \n";
2524   if(gGrid&&kPluginAliRootVersion.Length()==0){
2525     /*
2526     add2 += "\n // Dirty hack for TRD reference data \n";
2527     add2 += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
2528     add2 += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
2529     add2 += "\"); \n";
2530     */
2531   }
2532   add2 += "// BKC \n\n";
2533   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2534   st2.Insert(index,add.Data());
2535
2536
2537   if(kUseDebug){
2538     //    st2.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
2539   }
2540
2541   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
2542     index = st2.Index("gSystem->AddIncludePath(\"-I$"); // uncomment $ALICE_ROOT include for par files
2543     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2544     st2.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
2545   }
2546
2547   // do not exclude the extra files from merign, this is done explicitly in this train script
2548   //  index = st2.Index("mergeExcludes +="); // uncommen $ALICE_ROOT include for par files
2549   //  if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
2550   // st2.Insert(index,"// CKB comment out, handled explicitly by the train macro \n //");
2551
2552
2553   ofstream out2;
2554   out2.open(Form("%s_merge.C", kTrainName.Data()));
2555   if (out2.bad()) {
2556     return kFALSE;
2557   }
2558   out2 << st2 << endl;
2559   Printf("<<< Patching Merging Macro");
2560
2561
2562
2563   return kTRUE;
2564
2565 }