1 // runEMCalJetAnalysis.C
2 // =====================
3 // This macro can be used to run a jet analysis within the EMCal Jet Framework.
6 // -> Analyze ESDs from the pA pilot run on the AliEn grid with your task in AnaClass.cxx/.h
7 // dataType = "ESD", useGrid = kTRUE, pattern = "*ESDs/pass2/*ESDs.root", addCXXs = "AnaClass.cxx",
8 // addHs = "AnaClass.h", gridDir = "/alice/data/2012/LHC12g", gridMode = "full", runNumbers = "188359 188362"
10 // -> Analyze AODs (up to 96 files) locally given in files_aod.txt
11 // dataType = "AOD", useGrid = kFALSE, numLocalFiles = 96
15 // If you run on the grid, you can monitor the jobs with alimonitor.cern.ch. When enough of them are in DONE state,
16 // you have to merge the output. This can be done automatically, if you just change the gridMode to "terminate" and
17 // give the EXACT name of the task whose output should be merged in uniqueName.
20 // Authors: R. Haake, S. Aiola
25 AliAnalysisGrid* CreateAlienHandler(const char* uniqueName, const char* gridDir, const char* gridMode, const char* runNumbers,
26 const char* pattern, TString additionalCode, TString additionalHeaders, Int_t maxFilesPerWorker,
27 Int_t workerTTL, Bool_t isMC);
29 //______________________________________________________________________________
30 void runEMCalJetAnalysis(
31 const char* dataType = "ESD", // set the analysis type, AOD, ESD or sESD
32 Bool_t useGrid = kFALSE, // local or grid
33 const char* gridMode = "test", // set the grid run mode (can be "full", "test", "offline", "submit" or "terminate")
34 const char* pattern = "*ESDs/pass2/*ESDs.root", // file pattern (here one can specify subdirs like passX etc.) (used on grid)
35 const char* gridDir = "/alice/data/2012/LHC12g", // dir on alien, where the files live (used on grid)
36 const char* runNumbers = "188359 188362", // considered run numbers (used on grid)
37 UInt_t numLocalFiles = 50, // number of files analyzed locally
38 const char* runPeriod = "LHC12g", // set the run period (used on grid)
39 const char* uniqueName = "EMCalJF_LEGOTrainTest", // sets base string for the name of the task on the grid
40 UInt_t pSel = AliVEvent::kAny, // used event selection for every task except for the analysis tasks
41 Bool_t useTender = kFALSE, // trigger, if tender task should be used
42 Bool_t isMC = kFALSE, // trigger, if MC handler should be used
44 // Here you have to specify additional code files you want to use but that are not in aliroot
45 const char* addCXXs = "",
46 const char* addHs = "",
48 // These two settings depend on the dataset and your quotas on the AliEN services
49 Int_t maxFilesPerWorker = 4,
50 Int_t workerTTL = 7200
55 // Some pre-settings and constants
57 enum AlgoType {kKT, kANTIKT};
58 enum JetType {kFULLJETS, kCHARGEDJETS, kNEUTRALJETS};
59 gSystem->SetFPEMask();
60 gSystem->Setenv("ETRAIN_ROOT", ".");
61 gSystem->Setenv("ETRAIN_PERIOD", runPeriod);
62 // change this objects to strings
63 TString usedData(dataType);
64 TString additionalCXXs(addCXXs);
65 TString additionalHs(addHs);
66 cout << dataType << " analysis chosen" << endl;
69 cout << "-- using AliEn grid.\n";
70 if (usedData == "sESD")
72 cout << "Skimmed ESD analysis not available on the grid!" << endl;
77 cout << "-- using local analysis.\n";
80 // Load necessary libraries
83 // Create analysis manager
84 AliAnalysisManager* mgr = new AliAnalysisManager(uniqueName);
86 // Check type of input and create handler for it
87 TString localFiles("-1");
90 localFiles = "files_aod.txt";
91 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/train/AddAODHandler.C");
92 AliAODInputHandler* aodH = AddAODHandler();
94 else if((usedData == "ESD") || (usedData == "sESD"))
96 if (usedData == "ESD")
97 localFiles = "files_esd.txt";
99 localFiles = "files_sesd.txt";
101 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/train/AddESDHandler.C");
102 AliESDInputHandler* esdH = AddESDHandler();
106 cout << "Data type not recognized! You have to specify ESD, AOD, or sESD!\n";
110 cout << "Using " << localFiles.Data() << " as input file list.\n";
112 // Create MC handler, if MC is demanded
113 if (isMC && (usedData != "AOD"))
115 AliMCEventHandler* mcH = new AliMCEventHandler();
116 mcH->SetPreReadMode(AliMCEventHandler::kLmPreRead);
117 mcH->SetReadTR(kTRUE);
118 mgr->SetMCtruthEventHandler(mcH);
121 // ################# Now: Add some basic tasks
123 // Physics selection task
124 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/AddTaskEmcalPhysicsSelection.C");
125 AliPhysicsSelectionTask *physSelTask = AddTaskEmcalPhysicsSelection(kTRUE, kTRUE, pSel, 5, 5, 10, kTRUE, -1, -1, -1, -1);
129 cout << "no physSelTask";
134 if (usedData == "ESD") {
135 gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskCentrality.C");
136 AliCentralitySelectionTask *centralityTask = AddTaskCentrality(kTRUE);
139 // Compatibility task, only needed for skimmed ESD
140 if (usedData == "sESD") {
141 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/AddTaskEmcalCompat.C");
142 AliEmcalCompatTask *comptask = AddTaskEmcalCompat();
146 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/AddTaskEmcalSetup.C");
147 AliEmcalSetupTask *setupTask = AddTaskEmcalSetup();
149 UInt_t tpc = AliAnalysisTaskEmcal::kTPC;
154 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/AddTaskEMCALTender.C");
155 AliAnalysisTaskSE *tender = AddTaskEMCALTender(runPeriod, kFALSE, kTRUE, kTRUE, kTRUE, kTRUE, kTRUE, kFALSE, kTRUE, kTRUE, kTRUE,
156 kTRUE, AliEMCALRecParam::kClusterizerNxN);
157 if (usedData != "AOD" && !useGrid) {
158 AliTender *alitender = dynamic_cast<AliTender*>(tender);
162 // ################# Now: Call jet preparation macro (picotracks, hadronic corrected caloclusters, ...)
165 gROOT->LoadMacro("$ALICE_ROOT/PWGJE/EMCALJetTasks/macros/AddTaskJetPreparation.C");
166 AddTaskJetPreparation(dataType);
168 // ################# Now: Add jet finders+analyzers
170 gROOT->LoadMacro("$ALICE_ROOT/PWGJE/EMCALJetTasks/macros/AddTaskEmcalJet.C");
171 AliEmcalJetTask* jetFinderTask = AddTaskEmcalJet("PicoTracks", "CaloClustersCorr", kANTIKT, 0.2, kCHARGEDJETS, 0.150, 0.300);
173 // Here you can put in your AddTaskMacro for your task
174 gROOT->LoadMacro("$ALICE_ROOT/PWGJE/EMCALJetTasks/macros/AddTaskEmcalJetSample.C");
175 AliAnalysisTaskEmcalJetSample* anaTask = AddTaskEmcalJetSample("PicoTracks", "CaloClustersCorr", jetFinderTask->GetName(), "");
178 // Set the physics selection for all given tasks
179 TObjArray *toptasks = mgr->GetTasks();
180 for (Int_t i=0; i<toptasks->GetEntries(); ++i)
182 AliAnalysisTaskSE *task = dynamic_cast<AliAnalysisTaskSE*>(toptasks->At(i));
185 if (task->InheritsFrom("AliPhysicsSelectionTask"))
187 ::Info("setPSel", "Set physics selection for %s (%s)", task->GetName(), task->ClassName());
188 task->SelectCollisionCandidates(pSel);
191 mgr->SetUseProgressBar(1, 25);
193 if (!mgr->InitAnalysis())
198 { // GRID CALCULATION
200 AliAnalysisGrid *plugin = CreateAlienHandler(uniqueName, gridDir, gridMode, runNumbers, pattern, additionalCXXs, additionalHs, maxFilesPerWorker, workerTTL, isMC);
201 mgr->SetGridHandler(plugin);
204 cout << "Starting GRID Analysis...";
205 mgr->SetDebugLevel(0);
206 mgr->StartAnalysis("grid");
209 { // LOCAL CALCULATION
212 if (usedData == "AOD")
214 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/CreateAODChain.C");
215 chain = CreateAODChain(localFiles.Data(), numLocalFiles);
218 { // ESD or skimmed ESD
219 gROOT->LoadMacro("$ALICE_ROOT/PWG/EMCAL/macros/CreateESDChain.C");
220 chain = CreateESDChain(localFiles.Data(), numLocalFiles);
224 cout << "Starting LOCAL Analysis...";
225 mgr->SetDebugLevel(2);
226 mgr->StartAnalysis("local", chain);
230 //______________________________________________________________________________
233 // Load common libraries (better too many than too few)
234 gSystem->Load("libTree");
235 gSystem->Load("libVMC");
236 gSystem->Load("libGeom");
237 gSystem->Load("libGui");
238 gSystem->Load("libXMLParser");
239 gSystem->Load("libMinuit");
240 gSystem->Load("libMinuit2");
241 gSystem->Load("libProof");
242 gSystem->Load("libPhysics");
243 gSystem->Load("libSTEERBase");
244 gSystem->Load("libESD");
245 gSystem->Load("libAOD");
246 gSystem->Load("libOADB");
247 gSystem->Load("libANALYSIS");
248 gSystem->Load("libCDB");
249 gSystem->Load("libRAWDatabase");
250 gSystem->Load("libSTEER");
251 gSystem->Load("libEVGEN");
252 gSystem->Load("libANALYSISalice");
253 gSystem->Load("libCORRFW");
254 gSystem->Load("libTOFbase");
255 //gSystem->Load("libTOFrec");
256 gSystem->Load("libRAWDatabase.so");
257 gSystem->Load("libRAWDatarec.so");
258 gSystem->Load("libTPCbase.so");
259 gSystem->Load("libTPCrec.so");
260 gSystem->Load("libITSbase.so");
261 gSystem->Load("libITSrec.so");
262 gSystem->Load("libTRDbase.so");
263 gSystem->Load("libTENDER.so");
264 gSystem->Load("libSTAT.so");
265 gSystem->Load("libTRDrec.so");
266 gSystem->Load("libHMPIDbase.so");
267 gSystem->Load("libPWGPP.so");
268 gSystem->Load("libPWGHFbase");
269 gSystem->Load("libPWGDQdielectron");
270 gSystem->Load("libPWGHFhfe");
271 gSystem->Load("libEMCALUtils");
272 gSystem->Load("libPHOSUtils");
273 gSystem->Load("libPWGCaloTrackCorrBase");
274 gSystem->Load("libEMCALraw");
275 gSystem->Load("libEMCALbase");
276 gSystem->Load("libEMCALrec");
277 gSystem->Load("libTRDbase");
278 gSystem->Load("libVZERObase");
279 gSystem->Load("libVZEROrec");
280 gSystem->Load("libTENDER");
281 gSystem->Load("libTENDERSupplies");
282 gSystem->Load("libPWGEMCAL");
283 gSystem->Load("libPWGGAEMCALTasks");
284 gSystem->Load("libPWGTools");
285 gSystem->Load("libPWGCFCorrelationsBase");
286 gSystem->Load("libPWGCFCorrelationsDPhi");
288 //load CGAL, Fastjet and SISCone
289 gSystem->Load("libCGAL");
290 gSystem->Load("libfastjet");
291 gSystem->Load("libSISConePlugin");
293 gSystem->Load("libJETAN");
294 gSystem->Load("libFASTJETAN");
295 gSystem->Load("libPWGJEEMCALJetTasks");
299 gSystem->AddIncludePath("-Wno-deprecated");
300 gSystem->AddIncludePath("-I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/EMCAL");
301 gSystem->AddIncludePath("-I$ALICE_ROOT/PWGDQ/dielectron -I$ALICE_ROOT/PWGHF/hfe");
302 gSystem->AddIncludePath("-I$ALICE_ROOT/JETAN -I$ALICE_ROOT/JETAN/fastjet");
305 AliAnalysisGrid* CreateAlienHandler(const char* uniqueName, const char* gridDir, const char* gridMode, const char* runNumbers,
306 const char* pattern, TString additionalCode, TString additionalHeaders, Int_t maxFilesPerWorker,
307 Int_t workerTTL, Bool_t isMC)
310 TString tmpName(uniqueName);
312 // Only add current date and time when not in terminate mode! In this case the exact name has to be supplied by the user
313 if(strcmp(gridMode, "terminate"))
316 tmpName += currentTime.GetDate();
318 tmpName += currentTime.GetTime();
321 TString tmpAdditionalLibs("");
322 tmpAdditionalLibs = Form("libTree.so libVMC.so libGeom.so libGui.so libXMLParser.so libMinuit.so libMinuit2.so libProof.so libPhysics.so libSTEERBase.so libESD.so libAOD.so libOADB.so libANALYSIS.so libCDB.so libRAWDatabase.so libSTEER.so libANALYSISalice.so libCORRFW.so libTOFbase.so libRAWDatabase.so libRAWDatarec.so libTPCbase.so libTPCrec.so libITSbase.so libITSrec.so libTRDbase.so libTENDER.so libSTAT.so libTRDrec.so libHMPIDbase.so libPWGPP.so libPWGHFbase.so libPWGDQdielectron.so libPWGHFhfe.so libEMCALUtils.so libPHOSUtils.so libPWGCaloTrackCorrBase.so libEMCALraw.so libEMCALbase.so libEMCALrec.so libTRDbase.so libVZERObase.so libVZEROrec.so libTENDER.so libTENDERSupplies.so libPWGEMCAL.so libPWGGAEMCALTasks.so libPWGTools.so libPWGCFCorrelationsBase.so libPWGCFCorrelationsDPhi.so libCGAL.so libJETAN.so libfastjet.so libSISConePlugin.so libFASTJETAN.so libPWGJE.so libPWGmuon.so libPWGJEEMCALJetTasks.so %s %s",additionalCode.Data(),additionalHeaders.Data());
325 TString macroName("");
326 TString execName("");
328 macroName = Form("%s.C", tmpName.Data());
329 execName = Form("%s.sh", tmpName.Data());
330 jdlName = Form("%s.jdl", tmpName.Data());
332 AliAnalysisAlien *plugin = new AliAnalysisAlien();
333 plugin->SetOverwriteMode();
334 plugin->SetRunMode(gridMode);
336 // Here you can set the (Ali)ROOT version you want to use
337 plugin->SetAPIVersion("V1.1x");
338 plugin->SetROOTVersion("v5-34-02-1");
339 plugin->SetAliROOTVersion("v5-04-21-AN-1");
341 plugin->SetGridDataDir(gridDir); // e.g. "/alice/sim/LHC10a6"
342 plugin->SetDataPattern(pattern); //dir structure in run directory
344 plugin->SetRunPrefix("000");
346 plugin->AddRunList(runNumbers);
348 plugin->SetGridWorkingDir(Form("work/%s",tmpName.Data()));
349 plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
351 plugin->SetAnalysisSource(additionalCode.Data());
352 plugin->SetAdditionalLibs(tmpAdditionalLibs.Data());
353 plugin->AddExternalPackage("boost::v1_43_0");
354 plugin->AddExternalPackage("cgal::v3.6");
355 plugin->AddExternalPackage("fastjet::v2.4.2");
357 plugin->SetDefaultOutputs(kTRUE);
358 //plugin->SetMergeExcludes("");
359 plugin->SetAnalysisMacro(macroName.Data());
360 plugin->SetSplitMaxInputFileNumber(maxFilesPerWorker);
361 plugin->SetExecutable(execName.Data());
362 plugin->SetTTL(workerTTL);
363 plugin->SetInputFormat("xml-single");
364 plugin->SetJDLName(jdlName.Data());
366 plugin->SetSplitMode("se");