1 /**************************************************************************
2 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
4 * Author: The ALICE Off-line Project. *
5 * Contributors are mentioned in the code where appropriate. *
7 * Permission to use, copy, modify and distribute this software and its *
8 * documentation strictly for non-commercial purposes is hereby granted *
9 * without fee, provided that the above copyright notice appears in all *
10 * copies and that both the copyright notice and this permission notice *
11 * appear in the supporting documentation. The authors make no claims *
12 * about the suitability of this software for any purpose. It is *
13 * provided "as is" without express or implied warranty. *
14 **************************************************************************/
18 ///////////////////////////////////////////////////////////////////////////////
20 // class for running the reconstruction //
22 // Clusters and tracks are created for all detectors and all events by //
25 // AliReconstruction rec; //
28 // The Run method returns kTRUE in case of successful execution. //
30 // If the input to the reconstruction are not simulated digits but raw data, //
31 // this can be specified by an argument of the Run method or by the method //
33 // rec.SetInput("..."); //
35 // The input formats and the corresponding argument are: //
36 // - DDL raw data files: directory name, ends with "/" //
37 // - raw data root file: root file name, extension ".root" //
38 // - raw data DATE file: DATE file name, any other non-empty string //
39 // - MC root files : empty string, default //
41 // By default all events are reconstructed. The reconstruction can be //
42 // limited to a range of events by giving the index of the first and the //
43 // last event as an argument to the Run method or by calling //
45 // rec.SetEventRange(..., ...); //
47 // The index -1 (default) can be used for the last event to indicate no //
48 // upper limit of the event range. //
50 // In case of raw-data reconstruction the user can modify the default //
51 // number of events per digits/clusters/tracks file. In case the option //
52 // is not used the number is set 1. In case the user provides 0, than //
53 // the number of events is equal to the number of events inside the //
54 // raw-data file (i.e. one digits/clusters/tracks file): //
56 // rec.SetNumberOfEventsPerFile(...); //
59 // The name of the galice file can be changed from the default //
60 // "galice.root" by passing it as argument to the AliReconstruction //
61 // constructor or by //
63 // rec.SetGAliceFile("..."); //
65 // The local reconstruction can be switched on or off for individual //
68 // rec.SetRunLocalReconstruction("..."); //
70 // The argument is a (case sensitive) string with the names of the //
71 // detectors separated by a space. The special string "ALL" selects all //
72 // available detectors. This is the default. //
74 // The reconstruction of the primary vertex position can be switched off by //
76 // rec.SetRunVertexFinder(kFALSE); //
78 // The tracking and the creation of ESD tracks can be switched on for //
79 // selected detectors by //
81 // rec.SetRunTracking("..."); //
83 // Uniform/nonuniform field tracking switches (default: uniform field) //
85 // rec.SetUniformFieldTracking(); ( rec.SetUniformFieldTracking(kFALSE); ) //
87 // The filling of additional ESD information can be steered by //
89 // rec.SetFillESD("..."); //
91 // Again, for both methods the string specifies the list of detectors. //
92 // The default is "ALL". //
94 // The call of the shortcut method //
96 // rec.SetRunReconstruction("..."); //
98 // is equivalent to calling SetRunLocalReconstruction, SetRunTracking and //
99 // SetFillESD with the same detector selecting string as argument. //
101 // The reconstruction requires digits or raw data as input. For the creation //
102 // of digits and raw data have a look at the class AliSimulation. //
104 // For debug purposes the method SetCheckPointLevel can be used. If the //
105 // argument is greater than 0, files with ESD events will be written after //
106 // selected steps of the reconstruction for each event: //
107 // level 1: after tracking and after filling of ESD (final) //
108 // level 2: in addition after each tracking step //
109 // level 3: in addition after the filling of ESD for each detector //
110 // If a final check point file exists for an event, this event will be //
111 // skipped in the reconstruction. The tracking and the filling of ESD for //
112 // a detector will be skipped as well, if the corresponding check point //
113 // file exists. The ESD event will then be loaded from the file instead. //
115 ///////////////////////////////////////////////////////////////////////////////
121 #include <TPluginManager.h>
122 #include <TStopwatch.h>
123 #include <TGeoManager.h>
124 #include <TLorentzVector.h>
126 #include "AliReconstruction.h"
127 #include "AliReconstructor.h"
129 #include "AliRunLoader.h"
131 #include "AliRawReaderFile.h"
132 #include "AliRawReaderDate.h"
133 #include "AliRawReaderRoot.h"
134 #include "AliRawEventHeaderBase.h"
136 #include "AliESDfriend.h"
137 #include "AliESDVertex.h"
138 #include "AliMultiplicity.h"
139 #include "AliTracker.h"
140 #include "AliVertexer.h"
141 #include "AliVertexerTracks.h"
142 #include "AliV0vertexer.h"
143 #include "AliCascadeVertexer.h"
144 #include "AliHeader.h"
145 #include "AliGenEventHeader.h"
147 #include "AliESDpid.h"
148 #include "AliESDtrack.h"
150 #include "AliRunTag.h"
151 #include "AliDetectorTag.h"
152 #include "AliEventTag.h"
154 #include "AliTrackPointArray.h"
155 #include "AliCDBManager.h"
156 #include "AliCDBEntry.h"
157 #include "AliAlignObj.h"
159 #include "AliCentralTrigger.h"
160 #include "AliCTPRawStream.h"
162 #include "AliAODEvent.h"
163 #include "AliAODHeader.h"
164 #include "AliAODTrack.h"
165 #include "AliAODVertex.h"
166 #include "AliAODCluster.h"
169 ClassImp(AliReconstruction)
172 //_____________________________________________________________________________
173 const char* AliReconstruction::fgkDetectorName[AliReconstruction::fgkNDetectors] = {"ITS", "TPC", "TRD", "TOF", "PHOS", "HMPID", "EMCAL", "MUON", "FMD", "ZDC", "PMD", "T0", "VZERO", "ACORDE", "HLT"};
175 //_____________________________________________________________________________
176 AliReconstruction::AliReconstruction(const char* gAliceFilename, const char* cdbUri,
177 const char* name, const char* title) :
180 fUniformField(kTRUE),
181 fRunVertexFinder(kTRUE),
182 fRunHLTTracking(kFALSE),
183 fRunMuonTracking(kFALSE),
184 fStopOnError(kFALSE),
185 fWriteAlignmentData(kFALSE),
186 fWriteESDfriend(kFALSE),
188 fFillTriggerESD(kTRUE),
190 fRunLocalReconstruction("ALL"),
193 fGAliceFileName(gAliceFilename),
198 fNumberOfEventsPerFile(1),
201 fLoadAlignFromCDB(kTRUE),
202 fLoadAlignData("ALL"),
208 fDiamondProfile(NULL),
210 fAlignObjArray(NULL),
214 // create reconstruction object with default parameters
216 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
217 fReconstructor[iDet] = NULL;
218 fLoader[iDet] = NULL;
219 fTracker[iDet] = NULL;
224 //_____________________________________________________________________________
225 AliReconstruction::AliReconstruction(const AliReconstruction& rec) :
228 fUniformField(rec.fUniformField),
229 fRunVertexFinder(rec.fRunVertexFinder),
230 fRunHLTTracking(rec.fRunHLTTracking),
231 fRunMuonTracking(rec.fRunMuonTracking),
232 fStopOnError(rec.fStopOnError),
233 fWriteAlignmentData(rec.fWriteAlignmentData),
234 fWriteESDfriend(rec.fWriteESDfriend),
235 fWriteAOD(rec.fWriteAOD),
236 fFillTriggerESD(rec.fFillTriggerESD),
238 fRunLocalReconstruction(rec.fRunLocalReconstruction),
239 fRunTracking(rec.fRunTracking),
240 fFillESD(rec.fFillESD),
241 fGAliceFileName(rec.fGAliceFileName),
243 fEquipIdMap(rec.fEquipIdMap),
244 fFirstEvent(rec.fFirstEvent),
245 fLastEvent(rec.fLastEvent),
246 fNumberOfEventsPerFile(rec.fNumberOfEventsPerFile),
249 fLoadAlignFromCDB(rec.fLoadAlignFromCDB),
250 fLoadAlignData(rec.fLoadAlignData),
256 fDiamondProfile(NULL),
258 fAlignObjArray(rec.fAlignObjArray),
259 fCDBUri(rec.fCDBUri),
264 for (Int_t i = 0; i < rec.fOptions.GetEntriesFast(); i++) {
265 if (rec.fOptions[i]) fOptions.Add(rec.fOptions[i]->Clone());
267 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
268 fReconstructor[iDet] = NULL;
269 fLoader[iDet] = NULL;
270 fTracker[iDet] = NULL;
272 for (Int_t i = 0; i < rec.fSpecCDBUri.GetEntriesFast(); i++) {
273 if (rec.fSpecCDBUri[i]) fSpecCDBUri.Add(rec.fSpecCDBUri[i]->Clone());
277 //_____________________________________________________________________________
278 AliReconstruction& AliReconstruction::operator = (const AliReconstruction& rec)
280 // assignment operator
282 this->~AliReconstruction();
283 new(this) AliReconstruction(rec);
287 //_____________________________________________________________________________
288 AliReconstruction::~AliReconstruction()
294 fSpecCDBUri.Delete();
297 //_____________________________________________________________________________
298 void AliReconstruction::InitCDBStorage()
300 // activate a default CDB storage
301 // First check if we have any CDB storage set, because it is used
302 // to retrieve the calibration and alignment constants
304 AliCDBManager* man = AliCDBManager::Instance();
305 if (man->IsDefaultStorageSet())
307 AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
308 AliWarning("Default CDB storage has been already set !");
309 AliWarning(Form("Ignoring the default storage declared in AliReconstruction: %s",fCDBUri.Data()));
310 AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
314 AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
315 AliDebug(2, Form("Default CDB storage is set to: %s",fCDBUri.Data()));
316 AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
317 man->SetDefaultStorage(fCDBUri);
320 // Now activate the detector specific CDB storage locations
321 for (Int_t i = 0; i < fSpecCDBUri.GetEntriesFast(); i++) {
322 TObject* obj = fSpecCDBUri[i];
324 AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
325 AliDebug(2, Form("Specific CDB storage for %s is set to: %s",obj->GetName(),obj->GetTitle()));
326 AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
327 man->SetSpecificStorage(obj->GetName(), obj->GetTitle());
332 //_____________________________________________________________________________
333 void AliReconstruction::SetDefaultStorage(const char* uri) {
334 // Store the desired default CDB storage location
335 // Activate it later within the Run() method
341 //_____________________________________________________________________________
342 void AliReconstruction::SetSpecificStorage(const char* calibType, const char* uri) {
343 // Store a detector-specific CDB storage location
344 // Activate it later within the Run() method
346 AliCDBPath aPath(calibType);
347 if(!aPath.IsValid()){
348 // if calibType is not wildcard but it is a valid detector, add "/*" to make it a valid path
349 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
350 if(!strcmp(calibType, fgkDetectorName[iDet])) {
351 aPath.SetPath(Form("%s/*", calibType));
352 AliInfo(Form("Path for specific storage set to %s", aPath.GetPath().Data()));
356 if(!aPath.IsValid()){
357 AliError(Form("Not a valid path or detector: %s", calibType));
362 // check that calibType refers to a "valid" detector name
363 Bool_t isDetector = kFALSE;
364 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
365 TString detName = fgkDetectorName[iDet];
366 if(aPath.GetLevel0() == detName) {
373 AliError(Form("Not a valid detector: %s", aPath.GetLevel0().Data()));
377 TObject* obj = fSpecCDBUri.FindObject(aPath.GetPath().Data());
378 if (obj) fSpecCDBUri.Remove(obj);
379 fSpecCDBUri.Add(new TNamed(aPath.GetPath().Data(), uri));
383 //_____________________________________________________________________________
384 Bool_t AliReconstruction::SetRunNumber()
386 // The method is called in Run() in order
387 // to set a correct run number.
388 // In case of raw data reconstruction the
389 // run number is taken from the raw data header
391 if(AliCDBManager::Instance()->GetRun() < 0) {
393 AliError("No run loader is found !");
396 // read run number from gAlice
397 if(fRunLoader->GetAliRun())
398 AliCDBManager::Instance()->SetRun(fRunLoader->GetAliRun()->GetRunNumber());
401 if(fRawReader->NextEvent()) {
402 AliCDBManager::Instance()->SetRun(fRawReader->GetRunNumber());
403 fRawReader->RewindEvents();
406 AliError("No raw-data events found !");
411 AliError("Neither gAlice nor RawReader objects are found !");
415 AliInfo(Form("CDB Run number: %d",AliCDBManager::Instance()->GetRun()));
420 //_____________________________________________________________________________
421 Bool_t AliReconstruction::ApplyAlignObjsToGeom(TObjArray* alObjArray)
423 // Read collection of alignment objects (AliAlignObj derived) saved
424 // in the TClonesArray ClArrayName and apply them to the geometry
425 // manager singleton.
428 Int_t nvols = alObjArray->GetEntriesFast();
432 for(Int_t j=0; j<nvols; j++)
434 AliAlignObj* alobj = (AliAlignObj*) alObjArray->UncheckedAt(j);
435 if (alobj->ApplyToGeometry() == kFALSE) flag = kFALSE;
438 if (AliDebugLevelClass() >= 1) {
439 gGeoManager->GetTopNode()->CheckOverlaps(20);
440 TObjArray* ovexlist = gGeoManager->GetListOfOverlaps();
441 if(ovexlist->GetEntriesFast()){
442 AliError("The application of alignment objects to the geometry caused huge overlaps/extrusions!");
450 //_____________________________________________________________________________
451 Bool_t AliReconstruction::SetAlignObjArraySingleDet(const char* detName)
453 // Fills array of single detector's alignable objects from CDB
455 AliDebug(2, Form("Loading alignment data for detector: %s",detName));
459 AliCDBPath path(detName,"Align","Data");
461 entry=AliCDBManager::Instance()->Get(path.GetPath());
463 AliDebug(2,Form("Couldn't load alignment data for detector %s",detName));
467 TClonesArray *alignArray = (TClonesArray*) entry->GetObject();
468 alignArray->SetOwner(0);
469 AliDebug(2,Form("Found %d alignment objects for %s",
470 alignArray->GetEntries(),detName));
472 AliAlignObj *alignObj=0;
473 TIter iter(alignArray);
475 // loop over align objects in detector
476 while( ( alignObj=(AliAlignObj *) iter.Next() ) ){
477 fAlignObjArray->Add(alignObj);
479 // delete entry --- Don't delete, it is cached!
481 AliDebug(2, Form("fAlignObjArray entries: %d",fAlignObjArray->GetEntries() ));
486 //_____________________________________________________________________________
487 Bool_t AliReconstruction::MisalignGeometry(const TString& detectors)
489 // Read the alignment objects from CDB.
490 // Each detector is supposed to have the
491 // alignment objects in DET/Align/Data CDB path.
492 // All the detector objects are then collected,
493 // sorted by geometry level (starting from ALIC) and
494 // then applied to the TGeo geometry.
495 // Finally an overlaps check is performed.
497 // Load alignment data from CDB and fill fAlignObjArray
498 if(fLoadAlignFromCDB){
499 if(!fAlignObjArray) fAlignObjArray = new TObjArray();
501 //fAlignObjArray->RemoveAll();
502 fAlignObjArray->Clear();
503 fAlignObjArray->SetOwner(0);
505 TString detStr = detectors;
506 TString dataNotLoaded="";
507 TString dataLoaded="";
509 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
510 if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
511 if(!SetAlignObjArraySingleDet(fgkDetectorName[iDet])){
512 dataNotLoaded += fgkDetectorName[iDet];
513 dataNotLoaded += " ";
515 dataLoaded += fgkDetectorName[iDet];
518 } // end loop over detectors
520 if ((detStr.CompareTo("ALL") == 0)) detStr = "";
521 dataNotLoaded += detStr;
522 if(!dataLoaded.IsNull()) AliInfo(Form("Alignment data loaded for: %s",
524 if(!dataNotLoaded.IsNull()) AliInfo(Form("Didn't/couldn't load alignment data for: %s",
525 dataNotLoaded.Data()));
526 } // fLoadAlignFromCDB flag
528 // Check if the array with alignment objects was
529 // provided by the user. If yes, apply the objects
530 // to the present TGeo geometry
531 if (fAlignObjArray) {
532 if (gGeoManager && gGeoManager->IsClosed()) {
533 if (ApplyAlignObjsToGeom(fAlignObjArray) == kFALSE) {
534 AliError("The misalignment of one or more volumes failed!"
535 "Compare the list of simulated detectors and the list of detector alignment data!");
540 AliError("Can't apply the misalignment! gGeoManager doesn't exist or it is still opened!");
545 delete fAlignObjArray; fAlignObjArray=0;
547 // Update the TGeoPhysicalNodes
548 gGeoManager->RefreshPhysicalNodes();
553 //_____________________________________________________________________________
554 void AliReconstruction::SetGAliceFile(const char* fileName)
556 // set the name of the galice file
558 fGAliceFileName = fileName;
561 //_____________________________________________________________________________
562 void AliReconstruction::SetOption(const char* detector, const char* option)
564 // set options for the reconstruction of a detector
566 TObject* obj = fOptions.FindObject(detector);
567 if (obj) fOptions.Remove(obj);
568 fOptions.Add(new TNamed(detector, option));
572 //_____________________________________________________________________________
573 Bool_t AliReconstruction::Run(const char* input)
575 // run the reconstruction
578 if (!input) input = fInput.Data();
579 TString fileName(input);
580 if (fileName.EndsWith("/")) {
581 fRawReader = new AliRawReaderFile(fileName);
582 } else if (fileName.EndsWith(".root")) {
583 fRawReader = new AliRawReaderRoot(fileName);
584 } else if (!fileName.IsNull()) {
585 fRawReader = new AliRawReaderDate(fileName);
586 fRawReader->SelectEvents(7);
588 if (!fEquipIdMap.IsNull() && fRawReader)
589 fRawReader->LoadEquipmentIdsMap(fEquipIdMap);
592 // get the run loader
593 if (!InitRunLoader()) return kFALSE;
595 // Initialize the CDB storage
598 // Set run number in CDBManager (if it is not already set by the user)
599 if (!SetRunNumber()) if (fStopOnError) return kFALSE;
601 // Import ideal TGeo geometry and apply misalignment
603 TString geom(gSystem->DirName(fGAliceFileName));
604 geom += "/geometry.root";
605 TGeoManager::Import(geom.Data());
606 if (!gGeoManager) if (fStopOnError) return kFALSE;
609 AliCDBManager* man = AliCDBManager::Instance();
610 if (!MisalignGeometry(fLoadAlignData)) if (fStopOnError) return kFALSE;
612 // local reconstruction
613 if (!fRunLocalReconstruction.IsNull()) {
614 if (!RunLocalReconstruction(fRunLocalReconstruction)) {
615 if (fStopOnError) {CleanUp(); return kFALSE;}
618 // if (!fRunVertexFinder && fRunTracking.IsNull() &&
619 // fFillESD.IsNull()) return kTRUE;
622 if (fRunVertexFinder && !CreateVertexer()) {
630 if (!fRunTracking.IsNull() && !CreateTrackers(fRunTracking)) {
638 TStopwatch stopwatch;
641 // get the possibly already existing ESD file and tree
642 AliESD* esd = new AliESD; AliESD* hltesd = new AliESD;
643 TFile* fileOld = NULL;
644 TTree* treeOld = NULL; TTree *hlttreeOld = NULL;
645 if (!gSystem->AccessPathName("AliESDs.root")){
646 gSystem->CopyFile("AliESDs.root", "AliESDs.old.root", kTRUE);
647 fileOld = TFile::Open("AliESDs.old.root");
648 if (fileOld && fileOld->IsOpen()) {
649 treeOld = (TTree*) fileOld->Get("esdTree");
650 if (treeOld) treeOld->SetBranchAddress("ESD", &esd);
651 hlttreeOld = (TTree*) fileOld->Get("HLTesdTree");
652 if (hlttreeOld) hlttreeOld->SetBranchAddress("ESD", &hltesd);
656 // create the ESD output file and tree
657 TFile* file = TFile::Open("AliESDs.root", "RECREATE");
658 if (!file->IsOpen()) {
659 AliError("opening AliESDs.root failed");
660 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
662 TTree* tree = new TTree("esdTree", "Tree with ESD objects");
663 tree->Branch("ESD", "AliESD", &esd);
664 TTree* hlttree = new TTree("HLTesdTree", "Tree with HLT ESD objects");
665 hlttree->Branch("ESD", "AliESD", &hltesd);
666 delete esd; delete hltesd;
667 esd = NULL; hltesd = NULL;
669 // create the branch with ESD additions
670 AliESDfriend *esdf=0;
671 if (fWriteESDfriend) {
672 TBranch *br=tree->Branch("ESDfriend.", "AliESDfriend", &esdf);
673 br->SetFile("AliESDfriends.root");
676 // Get the diamond profile from OCDB
677 AliCDBEntry* entry = AliCDBManager::Instance()
678 ->Get("GRP/Calib/MeanVertex");
681 fDiamondProfile = dynamic_cast<AliESDVertex*> (entry->GetObject());
683 AliError("No diamond profile found in OCDB!");
686 AliVertexerTracks tVertexer(AliTracker::GetBz());
687 if(fDiamondProfile) tVertexer.SetVtxStart(fDiamondProfile);
690 if (fRawReader) fRawReader->RewindEvents();
692 for (Int_t iEvent = 0; iEvent < fRunLoader->GetNumberOfEvents(); iEvent++) {
693 if (fRawReader) fRawReader->NextEvent();
694 if ((iEvent < fFirstEvent) || ((fLastEvent >= 0) && (iEvent > fLastEvent))) {
695 // copy old ESD to the new one
697 treeOld->SetBranchAddress("ESD", &esd);
698 treeOld->GetEntry(iEvent);
702 hlttreeOld->SetBranchAddress("ESD", &hltesd);
703 hlttreeOld->GetEntry(iEvent);
709 AliInfo(Form("processing event %d", iEvent));
710 fRunLoader->GetEvent(iEvent);
713 sprintf(aFileName, "ESD_%d.%d_final.root",
714 fRunLoader->GetHeader()->GetRun(),
715 fRunLoader->GetHeader()->GetEventNrInRun());
716 if (!gSystem->AccessPathName(aFileName)) continue;
718 // local reconstruction
719 if (!fRunLocalReconstruction.IsNull()) {
720 if (!RunLocalEventReconstruction(fRunLocalReconstruction)) {
721 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
725 esd = new AliESD; hltesd = new AliESD;
726 esd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
727 hltesd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
728 esd->SetEventNumberInFile(fRunLoader->GetHeader()->GetEventNrInRun());
729 hltesd->SetEventNumberInFile(fRunLoader->GetHeader()->GetEventNrInRun());
731 // Set magnetic field from the tracker
732 esd->SetMagneticField(AliTracker::GetBz());
733 hltesd->SetMagneticField(AliTracker::GetBz());
735 // Fill raw-data error log into the ESD
736 if (fRawReader) FillRawDataErrorLog(iEvent,esd);
739 if (fRunVertexFinder) {
740 if (!ReadESD(esd, "vertex")) {
741 if (!RunVertexFinder(esd)) {
742 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
744 if (fCheckPointLevel > 0) WriteESD(esd, "vertex");
749 if (!fRunTracking.IsNull()) {
750 if (fRunHLTTracking) {
751 hltesd->SetVertex(esd->GetVertex());
752 if (!RunHLTTracking(hltesd)) {
753 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
759 if (!fRunTracking.IsNull()) {
760 if (fRunMuonTracking) {
761 if (!RunMuonTracking()) {
762 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
768 if (!fRunTracking.IsNull()) {
769 if (!ReadESD(esd, "tracking")) {
770 if (!RunTracking(esd)) {
771 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
773 if (fCheckPointLevel > 0) WriteESD(esd, "tracking");
778 if (!fFillESD.IsNull()) {
779 if (!FillESD(esd, fFillESD)) {
780 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
783 // fill Event header information from the RawEventHeader
784 if (fRawReader){FillRawEventHeaderESD(esd);}
787 AliESDpid::MakePID(esd);
788 if (fCheckPointLevel > 1) WriteESD(esd, "PID");
790 if (fFillTriggerESD) {
791 if (!ReadESD(esd, "trigger")) {
792 if (!FillTriggerESD(esd)) {
793 if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
795 if (fCheckPointLevel > 1) WriteESD(esd, "trigger");
799 //Try to improve the reconstructed primary vertex position using the tracks
800 AliESDVertex *pvtx=tVertexer.FindPrimaryVertex(esd);
801 if(fDiamondProfile) esd->SetDiamond(fDiamondProfile);
804 if (pvtx->GetStatus()) {
805 // Store the improved primary vertex
806 esd->SetPrimaryVertex(pvtx);
807 // Propagate the tracks to the DCA to the improved primary vertex
808 Double_t somethingbig = 777.;
809 Double_t bz = esd->GetMagneticField();
810 Int_t nt=esd->GetNumberOfTracks();
812 AliESDtrack *t = esd->GetTrack(nt);
813 t->RelateToVertex(pvtx, bz, somethingbig);
820 vtxer.Tracks2V0vertices(esd);
823 AliCascadeVertexer cvtxer;
824 cvtxer.V0sTracks2CascadeVertices(esd);
828 if (fWriteESDfriend) {
829 esdf=new AliESDfriend();
830 esd->GetESDfriend(esdf);
837 if (fCheckPointLevel > 0) WriteESD(esd, "final");
839 delete esd; delete esdf; delete hltesd;
840 esd = NULL; esdf=NULL; hltesd = NULL;
843 AliInfo(Form("Execution time for filling ESD : R:%.2fs C:%.2fs",
844 stopwatch.RealTime(),stopwatch.CpuTime()));
848 tree->SetBranchStatus("ESDfriend*",0);
853 TFile *aodFile = TFile::Open("AliAOD.root", "RECREATE");
854 ESDFile2AODFile(file, aodFile);
858 // Create tags for the events in the ESD tree (the ESD tree is always present)
859 // In case of empty events the tags will contain dummy values
861 CleanUp(file, fileOld);
867 //_____________________________________________________________________________
868 Bool_t AliReconstruction::RunLocalReconstruction(const TString& detectors)
870 // run the local reconstruction
872 TStopwatch stopwatch;
875 AliCDBManager* man = AliCDBManager::Instance();
876 Bool_t origCache = man->GetCacheFlag();
878 TString detStr = detectors;
879 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
880 if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
881 AliReconstructor* reconstructor = GetReconstructor(iDet);
882 if (!reconstructor) continue;
883 if (reconstructor->HasLocalReconstruction()) continue;
885 AliInfo(Form("running reconstruction for %s", fgkDetectorName[iDet]));
886 TStopwatch stopwatchDet;
887 stopwatchDet.Start();
889 AliInfo(Form("Loading calibration data from OCDB for %s", fgkDetectorName[iDet]));
891 man->SetCacheFlag(kTRUE);
892 TString calibPath = Form("%s/Calib/*", fgkDetectorName[iDet]);
893 man->GetAll(calibPath); // entries are cached!
896 fRawReader->RewindEvents();
897 reconstructor->Reconstruct(fRunLoader, fRawReader);
899 reconstructor->Reconstruct(fRunLoader);
901 AliInfo(Form("Execution time for %s: R:%.2fs C:%.2fs",
902 fgkDetectorName[iDet],
903 stopwatchDet.RealTime(),stopwatchDet.CpuTime()));
905 // unload calibration data
909 man->SetCacheFlag(origCache);
911 if ((detStr.CompareTo("ALL") != 0) && !detStr.IsNull()) {
912 AliError(Form("the following detectors were not found: %s",
914 if (fStopOnError) return kFALSE;
917 AliInfo(Form("Execution time: R:%.2fs C:%.2fs",
918 stopwatch.RealTime(),stopwatch.CpuTime()));
923 //_____________________________________________________________________________
924 Bool_t AliReconstruction::RunLocalEventReconstruction(const TString& detectors)
926 // run the local reconstruction
928 TStopwatch stopwatch;
931 TString detStr = detectors;
932 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
933 if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
934 AliReconstructor* reconstructor = GetReconstructor(iDet);
935 if (!reconstructor) continue;
936 AliLoader* loader = fLoader[iDet];
938 // conversion of digits
939 if (fRawReader && reconstructor->HasDigitConversion()) {
940 AliInfo(Form("converting raw data digits into root objects for %s",
941 fgkDetectorName[iDet]));
942 TStopwatch stopwatchDet;
943 stopwatchDet.Start();
944 loader->LoadDigits("update");
945 loader->CleanDigits();
946 loader->MakeDigitsContainer();
947 TTree* digitsTree = loader->TreeD();
948 reconstructor->ConvertDigits(fRawReader, digitsTree);
949 loader->WriteDigits("OVERWRITE");
950 loader->UnloadDigits();
951 AliInfo(Form("Execution time for %s: R:%.2fs C:%.2fs",
952 fgkDetectorName[iDet],
953 stopwatchDet.RealTime(),stopwatchDet.CpuTime()));
956 // local reconstruction
957 if (!reconstructor->HasLocalReconstruction()) continue;
958 AliInfo(Form("running reconstruction for %s", fgkDetectorName[iDet]));
959 TStopwatch stopwatchDet;
960 stopwatchDet.Start();
961 loader->LoadRecPoints("update");
962 loader->CleanRecPoints();
963 loader->MakeRecPointsContainer();
964 TTree* clustersTree = loader->TreeR();
965 if (fRawReader && !reconstructor->HasDigitConversion()) {
966 reconstructor->Reconstruct(fRawReader, clustersTree);
968 loader->LoadDigits("read");
969 TTree* digitsTree = loader->TreeD();
971 AliError(Form("Can't get the %s digits tree", fgkDetectorName[iDet]));
972 if (fStopOnError) return kFALSE;
974 reconstructor->Reconstruct(digitsTree, clustersTree);
976 loader->UnloadDigits();
978 loader->WriteRecPoints("OVERWRITE");
979 loader->UnloadRecPoints();
980 AliInfo(Form("Execution time for %s: R:%.2fs C:%.2fs",
981 fgkDetectorName[iDet],
982 stopwatchDet.RealTime(),stopwatchDet.CpuTime()));
985 if ((detStr.CompareTo("ALL") != 0) && !detStr.IsNull()) {
986 AliError(Form("the following detectors were not found: %s",
988 if (fStopOnError) return kFALSE;
991 AliInfo(Form("Execution time: R:%.2fs C:%.2fs",
992 stopwatch.RealTime(),stopwatch.CpuTime()));
997 //_____________________________________________________________________________
998 Bool_t AliReconstruction::RunVertexFinder(AliESD*& esd)
1000 // run the barrel tracking
1002 TStopwatch stopwatch;
1005 AliESDVertex* vertex = NULL;
1006 Double_t vtxPos[3] = {0, 0, 0};
1007 Double_t vtxErr[3] = {0.07, 0.07, 0.1};
1008 TArrayF mcVertex(3);
1009 if (fRunLoader->GetHeader() && fRunLoader->GetHeader()->GenEventHeader()) {
1010 fRunLoader->GetHeader()->GenEventHeader()->PrimaryVertex(mcVertex);
1011 for (Int_t i = 0; i < 3; i++) vtxPos[i] = mcVertex[i];
1015 if(fDiamondProfile) fVertexer->SetVtxStart(fDiamondProfile);
1016 AliInfo("running the ITS vertex finder");
1017 if (fLoader[0]) fLoader[0]->LoadRecPoints();
1018 vertex = fVertexer->FindVertexForCurrentEvent(fRunLoader->GetEventNumber());
1019 if (fLoader[0]) fLoader[0]->UnloadRecPoints();
1021 AliWarning("Vertex not found");
1022 vertex = new AliESDVertex();
1023 vertex->SetName("default");
1026 vertex->SetTruePos(vtxPos); // store also the vertex from MC
1027 vertex->SetName("reconstructed");
1031 AliInfo("getting the primary vertex from MC");
1032 vertex = new AliESDVertex(vtxPos, vtxErr);
1036 vertex->GetXYZ(vtxPos);
1037 vertex->GetSigmaXYZ(vtxErr);
1039 AliWarning("no vertex reconstructed");
1040 vertex = new AliESDVertex(vtxPos, vtxErr);
1042 esd->SetVertex(vertex);
1043 // if SPD multiplicity has been determined, it is stored in the ESD
1044 AliMultiplicity *mult= fVertexer->GetMultiplicity();
1045 if(mult)esd->SetMultiplicity(mult);
1047 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1048 if (fTracker[iDet]) fTracker[iDet]->SetVertex(vtxPos, vtxErr);
1052 AliInfo(Form("Execution time: R:%.2fs C:%.2fs",
1053 stopwatch.RealTime(),stopwatch.CpuTime()));
1058 //_____________________________________________________________________________
1059 Bool_t AliReconstruction::RunHLTTracking(AliESD*& esd)
1061 // run the HLT barrel tracking
1063 TStopwatch stopwatch;
1067 AliError("Missing runLoader!");
1071 AliInfo("running HLT tracking");
1073 // Get a pointer to the HLT reconstructor
1074 AliReconstructor *reconstructor = GetReconstructor(fgkNDetectors-1);
1075 if (!reconstructor) return kFALSE;
1078 for (Int_t iDet = 1; iDet >= 0; iDet--) {
1079 TString detName = fgkDetectorName[iDet];
1080 AliDebug(1, Form("%s HLT tracking", detName.Data()));
1081 reconstructor->SetOption(detName.Data());
1082 AliTracker *tracker = reconstructor->CreateTracker(fRunLoader);
1084 AliWarning(Form("couldn't create a HLT tracker for %s", detName.Data()));
1085 if (fStopOnError) return kFALSE;
1089 Double_t vtxErr[3]={0.005,0.005,0.010};
1090 const AliESDVertex *vertex = esd->GetVertex();
1091 vertex->GetXYZ(vtxPos);
1092 tracker->SetVertex(vtxPos,vtxErr);
1094 fLoader[iDet]->LoadRecPoints("read");
1095 TTree* tree = fLoader[iDet]->TreeR();
1097 AliError(Form("Can't get the %s cluster tree", detName.Data()));
1100 tracker->LoadClusters(tree);
1102 if (tracker->Clusters2Tracks(esd) != 0) {
1103 AliError(Form("HLT %s Clusters2Tracks failed", fgkDetectorName[iDet]));
1107 tracker->UnloadClusters();
1112 AliInfo(Form("Execution time: R:%.2fs C:%.2fs",
1113 stopwatch.RealTime(),stopwatch.CpuTime()));
1118 //_____________________________________________________________________________
1119 Bool_t AliReconstruction::RunMuonTracking()
1121 // run the muon spectrometer tracking
1123 TStopwatch stopwatch;
1127 AliError("Missing runLoader!");
1130 Int_t iDet = 7; // for MUON
1132 AliInfo("is running...");
1134 // Get a pointer to the MUON reconstructor
1135 AliReconstructor *reconstructor = GetReconstructor(iDet);
1136 if (!reconstructor) return kFALSE;
1139 TString detName = fgkDetectorName[iDet];
1140 AliDebug(1, Form("%s tracking", detName.Data()));
1141 AliTracker *tracker = reconstructor->CreateTracker(fRunLoader);
1143 AliWarning(Form("couldn't create a tracker for %s", detName.Data()));
1148 fLoader[iDet]->LoadTracks("update");
1149 fLoader[iDet]->CleanTracks();
1150 fLoader[iDet]->MakeTracksContainer();
1153 fLoader[iDet]->LoadRecPoints("read");
1155 if (!tracker->Clusters2Tracks(0x0)) {
1156 AliError(Form("%s Clusters2Tracks failed", fgkDetectorName[iDet]));
1159 fLoader[iDet]->UnloadRecPoints();
1161 fLoader[iDet]->WriteTracks("OVERWRITE");
1162 fLoader[iDet]->UnloadTracks();
1167 AliInfo(Form("Execution time: R:%.2fs C:%.2fs",
1168 stopwatch.RealTime(),stopwatch.CpuTime()));
1174 //_____________________________________________________________________________
1175 Bool_t AliReconstruction::RunTracking(AliESD*& esd)
1177 // run the barrel tracking
1179 TStopwatch stopwatch;
1182 AliInfo("running tracking");
1184 // pass 1: TPC + ITS inwards
1185 for (Int_t iDet = 1; iDet >= 0; iDet--) {
1186 if (!fTracker[iDet]) continue;
1187 AliDebug(1, Form("%s tracking", fgkDetectorName[iDet]));
1190 fLoader[iDet]->LoadRecPoints("read");
1191 TTree* tree = fLoader[iDet]->TreeR();
1193 AliError(Form("Can't get the %s cluster tree", fgkDetectorName[iDet]));
1196 fTracker[iDet]->LoadClusters(tree);
1199 if (fTracker[iDet]->Clusters2Tracks(esd) != 0) {
1200 AliError(Form("%s Clusters2Tracks failed", fgkDetectorName[iDet]));
1203 if (fCheckPointLevel > 1) {
1204 WriteESD(esd, Form("%s.tracking", fgkDetectorName[iDet]));
1206 // preliminary PID in TPC needed by the ITS tracker
1208 GetReconstructor(1)->FillESD(fRunLoader, esd);
1209 GetReconstructor(1)->FillESD((TTree*)NULL, (TTree*)NULL, esd);
1210 AliESDpid::MakePID(esd);
1214 // pass 2: ALL backwards
1215 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1216 if (!fTracker[iDet]) continue;
1217 AliDebug(1, Form("%s back propagation", fgkDetectorName[iDet]));
1220 if (iDet > 1) { // all except ITS, TPC
1222 fLoader[iDet]->LoadRecPoints("read");
1223 tree = fLoader[iDet]->TreeR();
1225 AliError(Form("Can't get the %s cluster tree", fgkDetectorName[iDet]));
1228 fTracker[iDet]->LoadClusters(tree);
1232 if (fTracker[iDet]->PropagateBack(esd) != 0) {
1233 AliError(Form("%s backward propagation failed", fgkDetectorName[iDet]));
1236 if (fCheckPointLevel > 1) {
1237 WriteESD(esd, Form("%s.back", fgkDetectorName[iDet]));
1241 if (iDet > 2) { // all except ITS, TPC, TRD
1242 fTracker[iDet]->UnloadClusters();
1243 fLoader[iDet]->UnloadRecPoints();
1245 // updated PID in TPC needed by the ITS tracker -MI
1247 GetReconstructor(1)->FillESD(fRunLoader, esd);
1248 GetReconstructor(1)->FillESD((TTree*)NULL, (TTree*)NULL, esd);
1249 AliESDpid::MakePID(esd);
1253 // write space-points to the ESD in case alignment data output
1255 if (fWriteAlignmentData)
1256 WriteAlignmentData(esd);
1258 // pass 3: TRD + TPC + ITS refit inwards
1259 for (Int_t iDet = 2; iDet >= 0; iDet--) {
1260 if (!fTracker[iDet]) continue;
1261 AliDebug(1, Form("%s inward refit", fgkDetectorName[iDet]));
1264 if (fTracker[iDet]->RefitInward(esd) != 0) {
1265 AliError(Form("%s inward refit failed", fgkDetectorName[iDet]));
1268 if (fCheckPointLevel > 1) {
1269 WriteESD(esd, Form("%s.refit", fgkDetectorName[iDet]));
1273 fTracker[iDet]->UnloadClusters();
1274 fLoader[iDet]->UnloadRecPoints();
1277 // Propagate track to the vertex - if not done by ITS
1279 Int_t ntracks = esd->GetNumberOfTracks();
1280 for (Int_t itrack=0; itrack<ntracks; itrack++){
1281 const Double_t kRadius = 3; // beam pipe radius
1282 const Double_t kMaxStep = 5; // max step
1283 const Double_t kMaxD = 123456; // max distance to prim vertex
1284 Double_t fieldZ = AliTracker::GetBz(); //
1285 AliESDtrack * track = esd->GetTrack(itrack);
1286 if (!track) continue;
1287 if (track->IsOn(AliESDtrack::kITSrefit)) continue;
1288 track->PropagateTo(kRadius, fieldZ, track->GetMass(),kMaxStep,kTRUE);
1289 track->RelateToVertex(esd->GetVertex(),fieldZ, kMaxD);
1292 AliInfo(Form("Execution time: R:%.2fs C:%.2fs",
1293 stopwatch.RealTime(),stopwatch.CpuTime()));
1298 //_____________________________________________________________________________
1299 Bool_t AliReconstruction::FillESD(AliESD*& esd, const TString& detectors)
1301 // fill the event summary data
1303 TStopwatch stopwatch;
1305 AliInfo("filling ESD");
1307 TString detStr = detectors;
1308 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1309 if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
1310 AliReconstructor* reconstructor = GetReconstructor(iDet);
1311 if (!reconstructor) continue;
1313 if (!ReadESD(esd, fgkDetectorName[iDet])) {
1314 AliDebug(1, Form("filling ESD for %s", fgkDetectorName[iDet]));
1315 TTree* clustersTree = NULL;
1316 if (reconstructor->HasLocalReconstruction() && fLoader[iDet]) {
1317 fLoader[iDet]->LoadRecPoints("read");
1318 clustersTree = fLoader[iDet]->TreeR();
1319 if (!clustersTree) {
1320 AliError(Form("Can't get the %s clusters tree",
1321 fgkDetectorName[iDet]));
1322 if (fStopOnError) return kFALSE;
1325 if (fRawReader && !reconstructor->HasDigitConversion()) {
1326 reconstructor->FillESD(fRawReader, clustersTree, esd);
1328 TTree* digitsTree = NULL;
1329 if (fLoader[iDet]) {
1330 fLoader[iDet]->LoadDigits("read");
1331 digitsTree = fLoader[iDet]->TreeD();
1333 AliError(Form("Can't get the %s digits tree",
1334 fgkDetectorName[iDet]));
1335 if (fStopOnError) return kFALSE;
1338 reconstructor->FillESD(digitsTree, clustersTree, esd);
1339 if (fLoader[iDet]) fLoader[iDet]->UnloadDigits();
1341 if (reconstructor->HasLocalReconstruction() && fLoader[iDet]) {
1342 fLoader[iDet]->UnloadRecPoints();
1346 reconstructor->FillESD(fRunLoader, fRawReader, esd);
1348 reconstructor->FillESD(fRunLoader, esd);
1350 if (fCheckPointLevel > 2) WriteESD(esd, fgkDetectorName[iDet]);
1354 if ((detStr.CompareTo("ALL") != 0) && !detStr.IsNull()) {
1355 AliError(Form("the following detectors were not found: %s",
1357 if (fStopOnError) return kFALSE;
1360 AliInfo(Form("Execution time: R:%.2fs C:%.2fs",
1361 stopwatch.RealTime(),stopwatch.CpuTime()));
1366 //_____________________________________________________________________________
1367 Bool_t AliReconstruction::FillTriggerESD(AliESD*& esd)
1369 // Reads the trigger decision which is
1370 // stored in Trigger.root file and fills
1371 // the corresponding esd entries
1373 AliInfo("Filling trigger information into the ESD");
1376 AliCTPRawStream input(fRawReader);
1377 if (!input.Next()) {
1378 AliError("No valid CTP (trigger) DDL raw data is found ! The trigger information is not stored in the ESD !");
1381 esd->SetTriggerMask(input.GetClassMask());
1382 esd->SetTriggerCluster(input.GetClusterMask());
1385 AliRunLoader *runloader = AliRunLoader::GetRunLoader();
1387 if (!runloader->LoadTrigger()) {
1388 AliCentralTrigger *aCTP = runloader->GetTrigger();
1389 esd->SetTriggerMask(aCTP->GetClassMask());
1390 esd->SetTriggerCluster(aCTP->GetClusterMask());
1393 AliWarning("No trigger can be loaded! The trigger information is not stored in the ESD !");
1398 AliError("No run loader is available! The trigger information is not stored in the ESD !");
1410 //_____________________________________________________________________________
1411 Bool_t AliReconstruction::FillRawEventHeaderESD(AliESD*& esd)
1414 // Filling information from RawReader Header
1417 AliInfo("Filling information from RawReader Header");
1418 esd->SetBunchCrossNumber(0);
1419 esd->SetOrbitNumber(0);
1420 esd->SetPeriodNumber(0);
1421 esd->SetTimeStamp(0);
1422 esd->SetEventType(0);
1423 const AliRawEventHeaderBase * eventHeader = fRawReader->GetEventHeader();
1426 const UInt_t *id = eventHeader->GetP("Id");
1427 esd->SetBunchCrossNumber((id)[1]&0x00000fff);
1428 esd->SetOrbitNumber((((id)[0]<<20)&0xf00000)|(((id)[1]>>12)&0xfffff));
1429 esd->SetPeriodNumber(((id)[0]>>4)&0x0fffffff);
1431 esd->SetTimeStamp((eventHeader->Get("Timestamp")));
1432 esd->SetEventType((eventHeader->Get("Type")));
1439 //_____________________________________________________________________________
1440 Bool_t AliReconstruction::IsSelected(TString detName, TString& detectors) const
1442 // check whether detName is contained in detectors
1443 // if yes, it is removed from detectors
1445 // check if all detectors are selected
1446 if ((detectors.CompareTo("ALL") == 0) ||
1447 detectors.BeginsWith("ALL ") ||
1448 detectors.EndsWith(" ALL") ||
1449 detectors.Contains(" ALL ")) {
1454 // search for the given detector
1455 Bool_t result = kFALSE;
1456 if ((detectors.CompareTo(detName) == 0) ||
1457 detectors.BeginsWith(detName+" ") ||
1458 detectors.EndsWith(" "+detName) ||
1459 detectors.Contains(" "+detName+" ")) {
1460 detectors.ReplaceAll(detName, "");
1464 // clean up the detectors string
1465 while (detectors.Contains(" ")) detectors.ReplaceAll(" ", " ");
1466 while (detectors.BeginsWith(" ")) detectors.Remove(0, 1);
1467 while (detectors.EndsWith(" ")) detectors.Remove(detectors.Length()-1, 1);
1472 //_____________________________________________________________________________
1473 Bool_t AliReconstruction::InitRunLoader()
1475 // get or create the run loader
1477 if (gAlice) delete gAlice;
1480 if (!gSystem->AccessPathName(fGAliceFileName.Data())) { // galice.root exists
1481 // load all base libraries to get the loader classes
1482 TString libs = gSystem->GetLibraries();
1483 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1484 TString detName = fgkDetectorName[iDet];
1485 if (detName == "HLT") continue;
1486 if (libs.Contains("lib" + detName + "base.so")) continue;
1487 gSystem->Load("lib" + detName + "base.so");
1489 fRunLoader = AliRunLoader::Open(fGAliceFileName.Data());
1491 AliError(Form("no run loader found in file %s", fGAliceFileName.Data()));
1495 fRunLoader->CdGAFile();
1496 if (gFile->GetKey(AliRunLoader::GetGAliceName())) {
1497 if (fRunLoader->LoadgAlice() == 0) {
1498 gAlice = fRunLoader->GetAliRun();
1499 AliTracker::SetFieldMap(gAlice->Field(),fUniformField);
1502 if (!gAlice && !fRawReader) {
1503 AliError(Form("no gAlice object found in file %s",
1504 fGAliceFileName.Data()));
1509 } else { // galice.root does not exist
1511 AliError(Form("the file %s does not exist", fGAliceFileName.Data()));
1515 fRunLoader = AliRunLoader::Open(fGAliceFileName.Data(),
1516 AliConfig::GetDefaultEventFolderName(),
1519 AliError(Form("could not create run loader in file %s",
1520 fGAliceFileName.Data()));
1524 fRunLoader->MakeTree("E");
1526 while (fRawReader->NextEvent()) {
1527 fRunLoader->SetEventNumber(iEvent);
1528 fRunLoader->GetHeader()->Reset(fRawReader->GetRunNumber(),
1530 fRunLoader->MakeTree("H");
1531 fRunLoader->TreeE()->Fill();
1534 fRawReader->RewindEvents();
1535 if (fNumberOfEventsPerFile > 0)
1536 fRunLoader->SetNumberOfEventsPerFile(fNumberOfEventsPerFile);
1538 fRunLoader->SetNumberOfEventsPerFile(iEvent);
1539 fRunLoader->WriteHeader("OVERWRITE");
1540 fRunLoader->CdGAFile();
1541 fRunLoader->Write(0, TObject::kOverwrite);
1542 // AliTracker::SetFieldMap(???);
1548 //_____________________________________________________________________________
1549 AliReconstructor* AliReconstruction::GetReconstructor(Int_t iDet)
1551 // get the reconstructor object and the loader for a detector
1553 if (fReconstructor[iDet]) return fReconstructor[iDet];
1555 // load the reconstructor object
1556 TPluginManager* pluginManager = gROOT->GetPluginManager();
1557 TString detName = fgkDetectorName[iDet];
1558 TString recName = "Ali" + detName + "Reconstructor";
1559 if (gAlice && !gAlice->GetDetector(detName) && (detName != "HLT")) return NULL;
1561 if (detName == "HLT") {
1562 if (!gROOT->GetClass("AliLevel3")) {
1563 gSystem->Load("libAliHLTSrc.so");
1564 gSystem->Load("libAliHLTMisc.so");
1565 gSystem->Load("libAliHLTHough.so");
1566 gSystem->Load("libAliHLTComp.so");
1570 AliReconstructor* reconstructor = NULL;
1571 // first check if a plugin is defined for the reconstructor
1572 TPluginHandler* pluginHandler =
1573 pluginManager->FindHandler("AliReconstructor", detName);
1574 // if not, add a plugin for it
1575 if (!pluginHandler) {
1576 AliDebug(1, Form("defining plugin for %s", recName.Data()));
1577 TString libs = gSystem->GetLibraries();
1578 if (libs.Contains("lib" + detName + "base.so") ||
1579 (gSystem->Load("lib" + detName + "base.so") >= 0)) {
1580 pluginManager->AddHandler("AliReconstructor", detName,
1581 recName, detName + "rec", recName + "()");
1583 pluginManager->AddHandler("AliReconstructor", detName,
1584 recName, detName, recName + "()");
1586 pluginHandler = pluginManager->FindHandler("AliReconstructor", detName);
1588 if (pluginHandler && (pluginHandler->LoadPlugin() == 0)) {
1589 reconstructor = (AliReconstructor*) pluginHandler->ExecPlugin(0);
1591 if (reconstructor) {
1592 TObject* obj = fOptions.FindObject(detName.Data());
1593 if (obj) reconstructor->SetOption(obj->GetTitle());
1594 reconstructor->Init(fRunLoader);
1595 fReconstructor[iDet] = reconstructor;
1598 // get or create the loader
1599 if (detName != "HLT") {
1600 fLoader[iDet] = fRunLoader->GetLoader(detName + "Loader");
1601 if (!fLoader[iDet]) {
1602 AliConfig::Instance()
1603 ->CreateDetectorFolders(fRunLoader->GetEventFolder(),
1605 // first check if a plugin is defined for the loader
1607 pluginManager->FindHandler("AliLoader", detName);
1608 // if not, add a plugin for it
1609 if (!pluginHandler) {
1610 TString loaderName = "Ali" + detName + "Loader";
1611 AliDebug(1, Form("defining plugin for %s", loaderName.Data()));
1612 pluginManager->AddHandler("AliLoader", detName,
1613 loaderName, detName + "base",
1614 loaderName + "(const char*, TFolder*)");
1615 pluginHandler = pluginManager->FindHandler("AliLoader", detName);
1617 if (pluginHandler && (pluginHandler->LoadPlugin() == 0)) {
1619 (AliLoader*) pluginHandler->ExecPlugin(2, detName.Data(),
1620 fRunLoader->GetEventFolder());
1622 if (!fLoader[iDet]) { // use default loader
1623 fLoader[iDet] = new AliLoader(detName, fRunLoader->GetEventFolder());
1625 if (!fLoader[iDet]) {
1626 AliWarning(Form("couldn't get loader for %s", detName.Data()));
1627 if (fStopOnError) return NULL;
1629 fRunLoader->AddLoader(fLoader[iDet]);
1630 fRunLoader->CdGAFile();
1631 if (gFile && !gFile->IsWritable()) gFile->ReOpen("UPDATE");
1632 fRunLoader->Write(0, TObject::kOverwrite);
1637 return reconstructor;
1640 //_____________________________________________________________________________
1641 Bool_t AliReconstruction::CreateVertexer()
1643 // create the vertexer
1646 AliReconstructor* itsReconstructor = GetReconstructor(0);
1647 if (itsReconstructor) {
1648 fVertexer = itsReconstructor->CreateVertexer(fRunLoader);
1651 AliWarning("couldn't create a vertexer for ITS");
1652 if (fStopOnError) return kFALSE;
1658 //_____________________________________________________________________________
1659 Bool_t AliReconstruction::CreateTrackers(const TString& detectors)
1661 // create the trackers
1663 TString detStr = detectors;
1664 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1665 if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
1666 AliReconstructor* reconstructor = GetReconstructor(iDet);
1667 if (!reconstructor) continue;
1668 TString detName = fgkDetectorName[iDet];
1669 if (detName == "HLT") {
1670 fRunHLTTracking = kTRUE;
1673 if (detName == "MUON") {
1674 fRunMuonTracking = kTRUE;
1679 fTracker[iDet] = reconstructor->CreateTracker(fRunLoader);
1680 if (!fTracker[iDet] && (iDet < 7)) {
1681 AliWarning(Form("couldn't create a tracker for %s", detName.Data()));
1682 if (fStopOnError) return kFALSE;
1689 //_____________________________________________________________________________
1690 void AliReconstruction::CleanUp(TFile* file, TFile* fileOld)
1692 // delete trackers and the run loader and close and delete the file
1694 for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
1695 delete fReconstructor[iDet];
1696 fReconstructor[iDet] = NULL;
1697 fLoader[iDet] = NULL;
1698 delete fTracker[iDet];
1699 fTracker[iDet] = NULL;
1703 delete fDiamondProfile;
1704 fDiamondProfile = NULL;
1719 gSystem->Unlink("AliESDs.old.root");
1724 //_____________________________________________________________________________
1725 Bool_t AliReconstruction::ReadESD(AliESD*& esd, const char* recStep) const
1727 // read the ESD event from a file
1729 if (!esd) return kFALSE;
1731 sprintf(fileName, "ESD_%d.%d_%s.root",
1732 esd->GetRunNumber(), esd->GetEventNumberInFile(), recStep);
1733 if (gSystem->AccessPathName(fileName)) return kFALSE;
1735 AliInfo(Form("reading ESD from file %s", fileName));
1736 AliDebug(1, Form("reading ESD from file %s", fileName));
1737 TFile* file = TFile::Open(fileName);
1738 if (!file || !file->IsOpen()) {
1739 AliError(Form("opening %s failed", fileName));
1746 esd = (AliESD*) file->Get("ESD");
1752 //_____________________________________________________________________________
1753 void AliReconstruction::WriteESD(AliESD* esd, const char* recStep) const
1755 // write the ESD event to a file
1759 sprintf(fileName, "ESD_%d.%d_%s.root",
1760 esd->GetRunNumber(), esd->GetEventNumberInFile(), recStep);
1762 AliDebug(1, Form("writing ESD to file %s", fileName));
1763 TFile* file = TFile::Open(fileName, "recreate");
1764 if (!file || !file->IsOpen()) {
1765 AliError(Form("opening %s failed", fileName));
1776 //_____________________________________________________________________________
1777 void AliReconstruction::CreateTag(TFile* file)
1782 Double_t fMUONMASS = 0.105658369;
1785 Double_t fThetaX, fThetaY, fPyz, fChisquare;
1786 Double_t fPxRec,fPyRec, fPzRec, fEnergy;
1788 TLorentzVector fEPvector;
1790 Float_t fZVertexCut = 10.0;
1791 Float_t fRhoVertexCut = 2.0;
1793 Float_t fLowPtCut = 1.0;
1794 Float_t fHighPtCut = 3.0;
1795 Float_t fVeryHighPtCut = 10.0;
1798 Double_t partFrac[5] = {0.01, 0.01, 0.85, 0.10, 0.05};
1800 // Creates the tags for all the events in a given ESD file
1802 Int_t nProtons, nKaons, nPions, nMuons, nElectrons;
1803 Int_t nPos, nNeg, nNeutr;
1804 Int_t nK0s, nNeutrons, nPi0s, nGamas;
1805 Int_t nCh1GeV, nCh3GeV, nCh10GeV;
1806 Int_t nMu1GeV, nMu3GeV, nMu10GeV;
1807 Int_t nEl1GeV, nEl3GeV, nEl10GeV;
1808 Float_t maxPt = .0, meanPt = .0, totalP = .0;
1810 Int_t iRunNumber = 0;
1811 TString fVertexName("default");
1813 AliRunTag *tag = new AliRunTag();
1814 AliEventTag *evTag = new AliEventTag();
1815 TTree ttag("T","A Tree with event tags");
1816 TBranch * btag = ttag.Branch("AliTAG", &tag);
1817 btag->SetCompressionLevel(9);
1819 AliInfo(Form("Creating the tags......."));
1821 if (!file || !file->IsOpen()) {
1822 AliError(Form("opening failed"));
1826 Int_t lastEvent = 0;
1827 TTree *t = (TTree*) file->Get("esdTree");
1828 TBranch * b = t->GetBranch("ESD");
1830 b->SetAddress(&esd);
1832 b->GetEntry(fFirstEvent);
1833 Int_t iInitRunNumber = esd->GetRunNumber();
1835 Int_t iNumberOfEvents = (Int_t)b->GetEntries();
1836 if(fLastEvent != -1) iNumberOfEvents = fLastEvent + 1;
1837 for (Int_t iEventNumber = fFirstEvent; iEventNumber < iNumberOfEvents; iEventNumber++) {
1865 b->GetEntry(iEventNumber);
1866 iRunNumber = esd->GetRunNumber();
1867 if(iRunNumber != iInitRunNumber) AliFatal("Inconsistency of run numbers in the AliESD!!!");
1868 const AliESDVertex * vertexIn = esd->GetVertex();
1869 if (!vertexIn) AliError("ESD has not defined vertex.");
1870 if (vertexIn) fVertexName = vertexIn->GetName();
1871 if(fVertexName != "default") fVertexflag = 1;
1872 for (Int_t iTrackNumber = 0; iTrackNumber < esd->GetNumberOfTracks(); iTrackNumber++) {
1873 AliESDtrack * esdTrack = esd->GetTrack(iTrackNumber);
1874 UInt_t status = esdTrack->GetStatus();
1876 //select only tracks with ITS refit
1877 if ((status&AliESDtrack::kITSrefit)==0) continue;
1878 //select only tracks with TPC refit
1879 if ((status&AliESDtrack::kTPCrefit)==0) continue;
1881 //select only tracks with the "combined PID"
1882 if ((status&AliESDtrack::kESDpid)==0) continue;
1884 esdTrack->GetPxPyPz(p);
1885 Double_t momentum = sqrt(pow(p[0],2) + pow(p[1],2) + pow(p[2],2));
1886 Double_t fPt = sqrt(pow(p[0],2) + pow(p[1],2));
1889 if(fPt > maxPt) maxPt = fPt;
1891 if(esdTrack->GetSign() > 0) {
1893 if(fPt > fLowPtCut) nCh1GeV++;
1894 if(fPt > fHighPtCut) nCh3GeV++;
1895 if(fPt > fVeryHighPtCut) nCh10GeV++;
1897 if(esdTrack->GetSign() < 0) {
1899 if(fPt > fLowPtCut) nCh1GeV++;
1900 if(fPt > fHighPtCut) nCh3GeV++;
1901 if(fPt > fVeryHighPtCut) nCh10GeV++;
1903 if(esdTrack->GetSign() == 0) nNeutr++;
1907 esdTrack->GetESDpid(prob);
1910 for(Int_t i = 0; i < AliPID::kSPECIES; i++) rcc += prob[i]*partFrac[i];
1911 if(rcc == 0.0) continue;
1914 for(Int_t i = 0; i < AliPID::kSPECIES; i++) w[i] = prob[i]*partFrac[i]/rcc;
1917 if ((w[4]>w[3])&&(w[4]>w[2])&&(w[4]>w[1])&&(w[4]>w[0])) nProtons++;
1919 if ((w[3]>w[4])&&(w[3]>w[2])&&(w[3]>w[1])&&(w[3]>w[0])) nKaons++;
1921 if ((w[2]>w[4])&&(w[2]>w[3])&&(w[2]>w[1])&&(w[2]>w[0])) nPions++;
1923 if ((w[0]>w[4])&&(w[0]>w[3])&&(w[0]>w[2])&&(w[0]>w[1])) {
1925 if(fPt > fLowPtCut) nEl1GeV++;
1926 if(fPt > fHighPtCut) nEl3GeV++;
1927 if(fPt > fVeryHighPtCut) nEl10GeV++;
1935 Int_t nMuonTracks = esd->GetNumberOfMuonTracks();
1936 // loop over all reconstructed tracks (also first track of combination)
1937 for (Int_t iTrack = 0; iTrack < nMuonTracks; iTrack++) {
1938 AliESDMuonTrack* muonTrack = esd->GetMuonTrack(iTrack);
1939 if (muonTrack == 0x0) continue;
1941 // Coordinates at vertex
1942 fZ = muonTrack->GetZ();
1943 fY = muonTrack->GetBendingCoor();
1944 fX = muonTrack->GetNonBendingCoor();
1946 fThetaX = muonTrack->GetThetaX();
1947 fThetaY = muonTrack->GetThetaY();
1949 fPyz = 1./TMath::Abs(muonTrack->GetInverseBendingMomentum());
1950 fPzRec = - fPyz / TMath::Sqrt(1.0 + TMath::Tan(fThetaY)*TMath::Tan(fThetaY));
1951 fPxRec = fPzRec * TMath::Tan(fThetaX);
1952 fPyRec = fPzRec * TMath::Tan(fThetaY);
1953 fCharge = Int_t(TMath::Sign(1.,muonTrack->GetInverseBendingMomentum()));
1955 //ChiSquare of the track if needed
1956 fChisquare = muonTrack->GetChi2()/(2.0 * muonTrack->GetNHit() - 5);
1957 fEnergy = TMath::Sqrt(fMUONMASS * fMUONMASS + fPxRec * fPxRec + fPyRec * fPyRec + fPzRec * fPzRec);
1958 fEPvector.SetPxPyPzE(fPxRec, fPyRec, fPzRec, fEnergy);
1960 // total number of muons inside a vertex cut
1961 if((TMath::Abs(fZ)<fZVertexCut) && (TMath::Sqrt(fY*fY+fX*fX)<fRhoVertexCut)) {
1963 if(fEPvector.Pt() > fLowPtCut) {
1965 if(fEPvector.Pt() > fHighPtCut) {
1967 if (fEPvector.Pt() > fVeryHighPtCut) {
1975 // Fill the event tags
1977 meanPt = meanPt/ntrack;
1979 evTag->SetEventId(iEventNumber+1);
1981 evTag->SetVertexX(vertexIn->GetXv());
1982 evTag->SetVertexY(vertexIn->GetYv());
1983 evTag->SetVertexZ(vertexIn->GetZv());
1984 evTag->SetVertexZError(vertexIn->GetZRes());
1986 evTag->SetVertexFlag(fVertexflag);
1988 evTag->SetT0VertexZ(esd->GetT0zVertex());
1990 evTag->SetTriggerMask(esd->GetTriggerMask());
1991 evTag->SetTriggerCluster(esd->GetTriggerCluster());
1993 evTag->SetZDCNeutron1Energy(esd->GetZDCN1Energy());
1994 evTag->SetZDCProton1Energy(esd->GetZDCP1Energy());
1995 evTag->SetZDCNeutron2Energy(esd->GetZDCN2Energy());
1996 evTag->SetZDCProton2Energy(esd->GetZDCP2Energy());
1997 evTag->SetZDCEMEnergy(esd->GetZDCEMEnergy());
1998 evTag->SetNumOfParticipants(esd->GetZDCParticipants());
2001 evTag->SetNumOfTracks(esd->GetNumberOfTracks());
2002 evTag->SetNumOfPosTracks(nPos);
2003 evTag->SetNumOfNegTracks(nNeg);
2004 evTag->SetNumOfNeutrTracks(nNeutr);
2006 evTag->SetNumOfV0s(esd->GetNumberOfV0s());
2007 evTag->SetNumOfCascades(esd->GetNumberOfCascades());
2008 evTag->SetNumOfKinks(esd->GetNumberOfKinks());
2009 evTag->SetNumOfPMDTracks(esd->GetNumberOfPmdTracks());
2011 evTag->SetNumOfProtons(nProtons);
2012 evTag->SetNumOfKaons(nKaons);
2013 evTag->SetNumOfPions(nPions);
2014 evTag->SetNumOfMuons(nMuons);
2015 evTag->SetNumOfElectrons(nElectrons);
2016 evTag->SetNumOfPhotons(nGamas);
2017 evTag->SetNumOfPi0s(nPi0s);
2018 evTag->SetNumOfNeutrons(nNeutrons);
2019 evTag->SetNumOfKaon0s(nK0s);
2021 evTag->SetNumOfChargedAbove1GeV(nCh1GeV);
2022 evTag->SetNumOfChargedAbove3GeV(nCh3GeV);
2023 evTag->SetNumOfChargedAbove10GeV(nCh10GeV);
2024 evTag->SetNumOfMuonsAbove1GeV(nMu1GeV);
2025 evTag->SetNumOfMuonsAbove3GeV(nMu3GeV);
2026 evTag->SetNumOfMuonsAbove10GeV(nMu10GeV);
2027 evTag->SetNumOfElectronsAbove1GeV(nEl1GeV);
2028 evTag->SetNumOfElectronsAbove3GeV(nEl3GeV);
2029 evTag->SetNumOfElectronsAbove10GeV(nEl10GeV);
2031 evTag->SetNumOfPHOSClusters(esd->GetNumberOfPHOSClusters());
2032 evTag->SetNumOfEMCALClusters(esd->GetNumberOfEMCALClusters());
2034 evTag->SetTotalMomentum(totalP);
2035 evTag->SetMeanPt(meanPt);
2036 evTag->SetMaxPt(maxPt);
2038 tag->SetRunId(iInitRunNumber);
2039 tag->AddEventTag(*evTag);
2041 if(fLastEvent == -1) lastEvent = (Int_t)b->GetEntries();
2042 else lastEvent = fLastEvent;
2048 sprintf(fileName, "Run%d.Event%d_%d.ESD.tag.root",
2049 tag->GetRunId(),fFirstEvent,lastEvent );
2050 AliInfo(Form("writing tags to file %s", fileName));
2051 AliDebug(1, Form("writing tags to file %s", fileName));
2053 TFile* ftag = TFile::Open(fileName, "recreate");
2062 //_____________________________________________________________________________
2063 void AliReconstruction::ESDFile2AODFile(TFile* esdFile, TFile* aodFile)
2065 // write all files from the given esd file to an aod file
2067 // create an AliAOD object
2068 AliAODEvent *aod = new AliAODEvent();
2069 aod->CreateStdContent();
2075 TTree *aodTree = new TTree("AOD", "AliAOD tree");
2076 aodTree->Branch(aod->GetList());
2079 TTree *t = (TTree*) esdFile->Get("esdTree");
2080 TBranch *b = t->GetBranch("ESD");
2082 b->SetAddress(&esd);
2084 Int_t nEvents = b->GetEntries();
2086 // set arrays and pointers
2094 // loop over events and fill them
2095 for (Int_t iEvent = 0; iEvent < nEvents; ++iEvent) {
2096 b->GetEntry(iEvent);
2098 // Multiplicity information needed by the header (to be revised!)
2099 Int_t nTracks = esd->GetNumberOfTracks();
2100 Int_t nPosTracks = 0;
2101 for (Int_t iTrack=0; iTrack<nTracks; ++iTrack)
2102 if (esd->GetTrack(iTrack)->GetSign()> 0) nPosTracks++;
2104 // create the header
2105 aod->AddHeader(new AliAODHeader(esd->GetRunNumber(),
2106 esd->GetBunchCrossNumber(),
2107 esd->GetOrbitNumber(),
2108 esd->GetPeriodNumber(),
2112 esd->GetMagneticField(),
2113 -999., // fill muon magnetic field
2114 -999., // centrality; to be filled, still
2115 esd->GetZDCN1Energy(),
2116 esd->GetZDCP1Energy(),
2117 esd->GetZDCN2Energy(),
2118 esd->GetZDCP2Energy(),
2119 esd->GetZDCEMEnergy(),
2120 esd->GetTriggerMask(),
2121 esd->GetTriggerCluster(),
2122 esd->GetEventType()));
2124 Int_t nV0s = esd->GetNumberOfV0s();
2125 Int_t nCascades = esd->GetNumberOfCascades();
2126 Int_t nKinks = esd->GetNumberOfKinks();
2127 Int_t nVertices = nV0s + nCascades + nKinks;
2129 aod->ResetStd(nTracks, nVertices);
2130 AliAODTrack *aodTrack;
2133 // Array to take into account the tracks already added to the AOD
2134 Bool_t * usedTrack = NULL;
2136 usedTrack = new Bool_t[nTracks];
2137 for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) usedTrack[iTrack]=kFALSE;
2139 // Array to take into account the V0s already added to the AOD
2140 Bool_t * usedV0 = NULL;
2142 usedV0 = new Bool_t[nV0s];
2143 for (Int_t iV0=0; iV0<nV0s; ++iV0) usedV0[iV0]=kFALSE;
2145 // Array to take into account the kinks already added to the AOD
2146 Bool_t * usedKink = NULL;
2148 usedKink = new Bool_t[nKinks];
2149 for (Int_t iKink=0; iKink<nKinks; ++iKink) usedKink[iKink]=kFALSE;
2152 // Access to the AOD container of vertices
2153 TClonesArray &vertices = *(aod->GetVertices());
2156 // Access to the AOD container of tracks
2157 TClonesArray &tracks = *(aod->GetTracks());
2160 // Add primary vertex. The primary tracks will be defined
2161 // after the loops on the composite objects (V0, cascades, kinks)
2162 const AliESDVertex *vtx = esd->GetPrimaryVertex();
2164 vtx->GetXYZ(pos); // position
2165 vtx->GetCovMatrix(covVtx); //covariance matrix
2167 AliAODVertex * primary = new(vertices[jVertices++])
2168 AliAODVertex(pos, covVtx, vtx->GetChi2toNDF(), NULL, AliAODVertex::kPrimary);
2170 // Create vertices starting from the most complex objects
2173 for (Int_t nCascade = 0; nCascade < nCascades; ++nCascade) {
2174 AliESDcascade *cascade = esd->GetCascade(nCascade);
2176 cascade->GetXYZ(pos[0], pos[1], pos[2]);
2177 cascade->GetPosCovXi(covVtx);
2179 // Add the cascade vertex
2180 AliAODVertex * vcascade = new(vertices[jVertices++]) AliAODVertex(pos,
2182 cascade->GetChi2Xi(), // = chi2/NDF since NDF = 2*2-3
2184 AliAODVertex::kCascade);
2186 primary->AddDaughter(vcascade);
2188 // Add the V0 from the cascade. The ESD class have to be optimized...
2189 // Now we have to search for the corresponding Vo in the list of V0s
2190 // using the indeces of the positive and negative tracks
2192 Int_t posFromV0 = cascade->GetPindex();
2193 Int_t negFromV0 = cascade->GetNindex();
2196 AliESDv0 * v0 = 0x0;
2199 for (Int_t iV0=0; iV0<nV0s; ++iV0) {
2201 v0 = esd->GetV0(iV0);
2202 Int_t posV0 = v0->GetPindex();
2203 Int_t negV0 = v0->GetNindex();
2205 if (posV0==posFromV0 && negV0==negFromV0) {
2211 AliAODVertex * vV0FromCascade = 0x0;
2213 if (indV0>-1 && !usedV0[indV0] ) {
2215 // the V0 exists in the array of V0s and is not used
2217 usedV0[indV0] = kTRUE;
2219 v0->GetXYZ(pos[0], pos[1], pos[2]);
2220 v0->GetPosCov(covVtx);
2222 vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
2224 v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
2229 // the V0 doesn't exist in the array of V0s or was used
2230 cerr << "Error: event " << iEvent << " cascade " << nCascade
2231 << " The V0 " << indV0
2232 << " doesn't exist in the array of V0s or was used!" << endl;
2234 cascade->GetXYZ(pos[0], pos[1], pos[2]);
2235 cascade->GetPosCov(covVtx);
2237 vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
2239 v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
2242 vcascade->AddDaughter(vV0FromCascade);
2245 // Add the positive tracks from the V0
2247 if (! usedTrack[posFromV0]) {
2249 usedTrack[posFromV0] = kTRUE;
2251 AliESDtrack *esdTrack = esd->GetTrack(posFromV0);
2252 esdTrack->GetPxPyPz(p);
2253 esdTrack->GetXYZ(pos);
2254 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2255 esdTrack->GetESDpid(pid);
2257 vV0FromCascade->AddDaughter(aodTrack =
2258 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2259 esdTrack->GetLabel(),
2265 (Short_t)esdTrack->GetSign(),
2266 esdTrack->GetITSClusterMap(),
2269 kTRUE, // check if this is right
2270 kFALSE, // check if this is right
2271 AliAODTrack::kSecondary)
2273 aodTrack->ConvertAliPIDtoAODPID();
2276 cerr << "Error: event " << iEvent << " cascade " << nCascade
2277 << " track " << posFromV0 << " has already been used!" << endl;
2280 // Add the negative tracks from the V0
2282 if (!usedTrack[negFromV0]) {
2284 usedTrack[negFromV0] = kTRUE;
2286 AliESDtrack *esdTrack = esd->GetTrack(negFromV0);
2287 esdTrack->GetPxPyPz(p);
2288 esdTrack->GetXYZ(pos);
2289 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2290 esdTrack->GetESDpid(pid);
2292 vV0FromCascade->AddDaughter(aodTrack =
2293 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2294 esdTrack->GetLabel(),
2300 (Short_t)esdTrack->GetSign(),
2301 esdTrack->GetITSClusterMap(),
2304 kTRUE, // check if this is right
2305 kFALSE, // check if this is right
2306 AliAODTrack::kSecondary)
2308 aodTrack->ConvertAliPIDtoAODPID();
2311 cerr << "Error: event " << iEvent << " cascade " << nCascade
2312 << " track " << negFromV0 << " has already been used!" << endl;
2315 // Add the bachelor track from the cascade
2317 Int_t bachelor = cascade->GetBindex();
2319 if(!usedTrack[bachelor]) {
2321 usedTrack[bachelor] = kTRUE;
2323 AliESDtrack *esdTrack = esd->GetTrack(bachelor);
2324 esdTrack->GetPxPyPz(p);
2325 esdTrack->GetXYZ(pos);
2326 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2327 esdTrack->GetESDpid(pid);
2329 vcascade->AddDaughter(aodTrack =
2330 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2331 esdTrack->GetLabel(),
2337 (Short_t)esdTrack->GetSign(),
2338 esdTrack->GetITSClusterMap(),
2341 kTRUE, // check if this is right
2342 kFALSE, // check if this is right
2343 AliAODTrack::kSecondary)
2345 aodTrack->ConvertAliPIDtoAODPID();
2348 cerr << "Error: event " << iEvent << " cascade " << nCascade
2349 << " track " << bachelor << " has already been used!" << endl;
2352 // Add the primary track of the cascade (if any)
2354 } // end of the loop on cascades
2358 for (Int_t nV0 = 0; nV0 < nV0s; ++nV0) {
2360 if (usedV0[nV0]) continue; // skip if aready added to the AOD
2362 AliESDv0 *v0 = esd->GetV0(nV0);
2364 v0->GetXYZ(pos[0], pos[1], pos[2]);
2365 v0->GetPosCov(covVtx);
2367 AliAODVertex * vV0 =
2368 new(vertices[jVertices++]) AliAODVertex(pos,
2370 v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
2373 primary->AddDaughter(vV0);
2375 Int_t posFromV0 = v0->GetPindex();
2376 Int_t negFromV0 = v0->GetNindex();
2378 // Add the positive tracks from the V0
2380 if (!usedTrack[posFromV0]) {
2382 usedTrack[posFromV0] = kTRUE;
2384 AliESDtrack *esdTrack = esd->GetTrack(posFromV0);
2385 esdTrack->GetPxPyPz(p);
2386 esdTrack->GetXYZ(pos);
2387 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2388 esdTrack->GetESDpid(pid);
2390 vV0->AddDaughter(aodTrack =
2391 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2392 esdTrack->GetLabel(),
2398 (Short_t)esdTrack->GetSign(),
2399 esdTrack->GetITSClusterMap(),
2402 kTRUE, // check if this is right
2403 kFALSE, // check if this is right
2404 AliAODTrack::kSecondary)
2406 aodTrack->ConvertAliPIDtoAODPID();
2409 cerr << "Error: event " << iEvent << " V0 " << nV0
2410 << " track " << posFromV0 << " has already been used!" << endl;
2413 // Add the negative tracks from the V0
2415 if (!usedTrack[negFromV0]) {
2417 usedTrack[negFromV0] = kTRUE;
2419 AliESDtrack *esdTrack = esd->GetTrack(negFromV0);
2420 esdTrack->GetPxPyPz(p);
2421 esdTrack->GetXYZ(pos);
2422 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2423 esdTrack->GetESDpid(pid);
2425 vV0->AddDaughter(aodTrack =
2426 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2427 esdTrack->GetLabel(),
2433 (Short_t)esdTrack->GetSign(),
2434 esdTrack->GetITSClusterMap(),
2437 kTRUE, // check if this is right
2438 kFALSE, // check if this is right
2439 AliAODTrack::kSecondary)
2441 aodTrack->ConvertAliPIDtoAODPID();
2444 cerr << "Error: event " << iEvent << " V0 " << nV0
2445 << " track " << negFromV0 << " has already been used!" << endl;
2448 } // end of the loop on V0s
2450 // Kinks: it is a big mess the access to the information in the kinks
2451 // The loop is on the tracks in order to find the mother and daugther of each kink
2454 for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) {
2457 AliESDtrack * esdTrack = esd->GetTrack(iTrack);
2459 Int_t ikink = esdTrack->GetKinkIndex(0);
2462 // Negative kink index: mother, positive: daughter
2464 // Search for the second track of the kink
2466 for (Int_t jTrack = iTrack+1; jTrack<nTracks; ++jTrack) {
2468 AliESDtrack * esdTrack1 = esd->GetTrack(jTrack);
2470 Int_t jkink = esdTrack1->GetKinkIndex(0);
2472 if ( TMath::Abs(ikink)==TMath::Abs(jkink) ) {
2474 // The two tracks are from the same kink
2476 if (usedKink[TMath::Abs(ikink)-1]) continue; // skip used kinks
2479 Int_t idaughter = -1;
2481 if (ikink<0 && jkink>0) {
2486 else if (ikink>0 && jkink<0) {
2492 cerr << "Error: Wrong combination of kink indexes: "
2493 << ikink << " " << jkink << endl;
2497 // Add the mother track
2499 AliAODTrack * mother = NULL;
2501 if (!usedTrack[imother]) {
2503 usedTrack[imother] = kTRUE;
2505 AliESDtrack *esdTrack = esd->GetTrack(imother);
2506 esdTrack->GetPxPyPz(p);
2507 esdTrack->GetXYZ(pos);
2508 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2509 esdTrack->GetESDpid(pid);
2512 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2513 esdTrack->GetLabel(),
2519 (Short_t)esdTrack->GetSign(),
2520 esdTrack->GetITSClusterMap(),
2523 kTRUE, // check if this is right
2524 kTRUE, // check if this is right
2525 AliAODTrack::kPrimary);
2526 primary->AddDaughter(mother);
2527 mother->ConvertAliPIDtoAODPID();
2530 cerr << "Error: event " << iEvent << " kink " << TMath::Abs(ikink)-1
2531 << " track " << imother << " has already been used!" << endl;
2534 // Add the kink vertex
2535 AliESDkink * kink = esd->GetKink(TMath::Abs(ikink)-1);
2537 AliAODVertex * vkink =
2538 new(vertices[jVertices++]) AliAODVertex(kink->GetPosition(),
2542 AliAODVertex::kKink);
2543 // Add the daughter track
2545 AliAODTrack * daughter = NULL;
2547 if (!usedTrack[idaughter]) {
2549 usedTrack[idaughter] = kTRUE;
2551 AliESDtrack *esdTrack = esd->GetTrack(idaughter);
2552 esdTrack->GetPxPyPz(p);
2553 esdTrack->GetXYZ(pos);
2554 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2555 esdTrack->GetESDpid(pid);
2558 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2559 esdTrack->GetLabel(),
2565 (Short_t)esdTrack->GetSign(),
2566 esdTrack->GetITSClusterMap(),
2569 kTRUE, // check if this is right
2570 kTRUE, // check if this is right
2571 AliAODTrack::kPrimary);
2572 vkink->AddDaughter(daughter);
2573 daughter->ConvertAliPIDtoAODPID();
2576 cerr << "Error: event " << iEvent << " kink " << TMath::Abs(ikink)-1
2577 << " track " << idaughter << " has already been used!" << endl;
2589 // Tracks (primary and orphan)
2591 for (Int_t nTrack = 0; nTrack < nTracks; ++nTrack) {
2594 if (usedTrack[nTrack]) continue;
2596 AliESDtrack *esdTrack = esd->GetTrack(nTrack);
2597 esdTrack->GetPxPyPz(p);
2598 esdTrack->GetXYZ(pos);
2599 esdTrack->GetCovarianceXYZPxPyPz(covTr);
2600 esdTrack->GetESDpid(pid);
2602 Float_t impactXY, impactZ;
2604 esdTrack->GetImpactParameters(impactXY,impactZ);
2607 // track inside the beam pipe
2609 primary->AddDaughter(aodTrack =
2610 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2611 esdTrack->GetLabel(),
2617 (Short_t)esdTrack->GetSign(),
2618 esdTrack->GetITSClusterMap(),
2621 kTRUE, // check if this is right
2622 kTRUE, // check if this is right
2623 AliAODTrack::kPrimary)
2625 aodTrack->ConvertAliPIDtoAODPID();
2628 // outside the beam pipe: orphan track
2630 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
2631 esdTrack->GetLabel(),
2637 (Short_t)esdTrack->GetSign(),
2638 esdTrack->GetITSClusterMap(),
2641 kFALSE, // check if this is right
2642 kFALSE, // check if this is right
2643 AliAODTrack::kOrphan);
2644 aodTrack->ConvertAliPIDtoAODPID();
2646 } // end of loop on tracks
2649 Int_t nMuTracks = esd->GetNumberOfMuonTracks();
2650 for (Int_t nMuTrack = 0; nMuTrack < nMuTracks; ++nMuTrack) {
2652 AliESDMuonTrack *esdMuTrack = esd->GetMuonTrack(nMuTrack);
2653 p[0] = esdMuTrack->Px();
2654 p[1] = esdMuTrack->Py();
2655 p[2] = esdMuTrack->Pz();
2656 pos[0] = primary->GetX();
2657 pos[1] = primary->GetY();
2658 pos[2] = primary->GetZ();
2660 // has to be changed once the muon pid is provided by the ESD
2661 for (Int_t i = 0; i < 10; pid[i++] = 0.); pid[AliAODTrack::kMuon]=1.;
2663 primary->AddDaughter(
2664 new(tracks[jTracks++]) AliAODTrack(0, // no ID provided
2665 0, // no label provided
2670 NULL, // no covariance matrix provided
2671 (Short_t)-99, // no charge provided
2672 0, // no ITSClusterMap
2675 kTRUE, // check if this is right
2676 kTRUE, // not used for vertex fit
2677 AliAODTrack::kPrimary)
2681 // Access to the AOD container of clusters
2682 TClonesArray &clusters = *(aod->GetClusters());
2686 Int_t nClusters = esd->GetNumberOfCaloClusters();
2688 for (Int_t iClust=0; iClust<nClusters; ++iClust) {
2690 AliESDCaloCluster * cluster = esd->GetCaloCluster(iClust);
2692 Int_t id = cluster->GetID();
2694 Float_t energy = cluster->GetClusterEnergy();
2695 cluster->GetGlobalPosition(posF);
2696 AliAODVertex *prodVertex = primary;
2697 AliAODTrack *primTrack = NULL;
2698 Char_t ttype=AliAODCluster::kUndef;
2700 if (cluster->IsPHOS()) ttype=AliAODCluster::kPHOSNeutral;
2701 else if (cluster->IsEMCAL()) {
2703 if (cluster->GetClusterType() == AliESDCaloCluster::kPseudoCluster)
2704 ttype = AliAODCluster::kEMCALPseudoCluster;
2706 ttype = AliAODCluster::kEMCALClusterv1;
2710 new(clusters[jClusters++]) AliAODCluster(id,
2714 NULL, // no covariance matrix provided
2715 NULL, // no pid for clusters provided
2720 } // end of loop on calo clusters
2722 delete [] usedTrack;
2726 // fill the tree for this event
2728 } // end of event loop
2730 aodTree->GetUserInfo()->Add(aod);
2735 // write the tree to the specified file
2736 aodFile = aodTree->GetCurrentFile();
2744 void AliReconstruction::WriteAlignmentData(AliESD* esd)
2746 // Write space-points which are then used in the alignment procedures
2747 // For the moment only ITS, TRD and TPC
2749 // Load TOF clusters
2751 fLoader[3]->LoadRecPoints("read");
2752 TTree* tree = fLoader[3]->TreeR();
2754 AliError(Form("Can't get the %s cluster tree", fgkDetectorName[3]));
2757 fTracker[3]->LoadClusters(tree);
2759 Int_t ntracks = esd->GetNumberOfTracks();
2760 for (Int_t itrack = 0; itrack < ntracks; itrack++)
2762 AliESDtrack *track = esd->GetTrack(itrack);
2765 for (Int_t iDet = 3; iDet >= 0; iDet--)
2766 nsp += track->GetNcls(iDet);
2768 AliTrackPointArray *sp = new AliTrackPointArray(nsp);
2769 track->SetTrackPointArray(sp);
2771 for (Int_t iDet = 3; iDet >= 0; iDet--) {
2772 AliTracker *tracker = fTracker[iDet];
2773 if (!tracker) continue;
2774 Int_t nspdet = track->GetNcls(iDet);
2775 if (nspdet <= 0) continue;
2776 track->GetClusters(iDet,idx);
2780 while (isp < nspdet) {
2781 Bool_t isvalid = tracker->GetTrackPoint(idx[isp2],p); isp2++;
2782 const Int_t kNTPCmax = 159;
2783 if (iDet==1 && isp2>kNTPCmax) break; // to be fixed
2784 if (!isvalid) continue;
2785 sp->AddPoint(isptrack,&p); isptrack++; isp++;
2791 fTracker[3]->UnloadClusters();
2792 fLoader[3]->UnloadRecPoints();
2796 //_____________________________________________________________________________
2797 void AliReconstruction::FillRawDataErrorLog(Int_t iEvent, AliESD* esd)
2799 // The method reads the raw-data error log
2800 // accumulated within the rawReader.
2801 // It extracts the raw-data errors related to
2802 // the current event and stores them into
2803 // a TClonesArray inside the esd object.
2805 if (!fRawReader) return;
2807 for(Int_t i = 0; i < fRawReader->GetNumberOfErrorLogs(); i++) {
2809 AliRawDataErrorLog *log = fRawReader->GetErrorLog(i);
2811 if (iEvent != log->GetEventNumber()) continue;
2813 esd->AddRawDataErrorLog(log);