TRD/AliTRDCalibViewer.cxx

   1 /**************************************************************************
   2  * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
   3  *                                                                        *
   4  * Author: The ALICE Off-line Project.                                    *
   5  * Contributors are mentioned in the code where appropriate.              *
   6  *                                                                        *
   7  * Permission to use, copy, modify and distribute this software and its   *
   8  * documentation strictly for non-commercial purposes is hereby granted   *
   9  * without fee, provided that the above copyright notice appears in all   *
  10  * copies and that both the copyright notice and this permission notice   *
  11  * appear in the supporting documentation. The authors make no claims     *
  12  * about the suitability of this software for any purpose. It is          *
  13  * provided "as is" without express or implied warranty.                  *
  14  **************************************************************************/
  15
  16 /* $Id: AliTRDCalibViewer.cxx 40390 2010-04-14 09:43:23Z cblume $ */
  17
  18 ///////////////////////////////////////////////////////////////////////////////
  19 //                                                                           //
  20 //  Class which implements AliBaseCalibViewer for the TRD                    //
  21 //  used for the calibration monitor                                         //
  22 //                                                                           //
  23 //  Authors:     Marian Ivanov (Marian.Ivanov@cern.ch)                       //
  24 //               Jens Wiechula (Jens.Wiechula@cern.ch)                       //
  25 //               Ionut Arsene  (iarsene@cern.ch)                             //
  26 //                                                                           //
  27 ///////////////////////////////////////////////////////////////////////////////
  28
  29 #include <iostream>
  30 #include <fstream>
  31 #include <TString.h>
  32 #include <TRandom.h>
  33 #include <TLegend.h>
  34 #include <TLine.h>
  35 #include <TCanvas.h>
  36 #include <TROOT.h>
  37 #include <TStyle.h>
  38 #include <TH1.h>
  39 #include <TH1F.h>
  40 #include <TMath.h>
  41 #include <TVectorD.h>
  42 #include <THashTable.h>
  43 #include <TObjString.h>
  44 #include <TTimeStamp.h>
  45 #include <TObjString.h>
  46 #include <TTreeStream.h>
  47 #include <TFile.h>
  48 #include <TKey.h>
  49 #include <TGraph.h>
  50 #include <TDirectory.h>
  51 #include <TFriendElement.h>
  52 #include <TGrid.h>
  53 #include <TGeoManager.h>
  54 #include "AliTRDCalDet.h"
  55 #include "AliTRDCalPad.h"
  56 #include "AliTRDCalROC.h"
  57 #include "AliTRDCalChamberStatus.h"
  58 #include "AliTRDCalSingleChamberStatus.h"
  59 #include "AliTRDCalPadStatus.h"
  60 #include "AliTRDCalDCSv2.h"
  61 #include "AliTRDCalDCSFEEv2.h"
  62 #include "AliTRDcalibDB.h"
  63 #include "AliCDBManager.h"
  64 #include "AliCDBStorage.h"
  65 #include "AliCDBEntry.h"
  66 #include "AliGRPObject.h"
  67 #include "AliTRDalignment.h"
  68 #include "AliTRDgeometry.h"
  69 #include "AliTRDpadPlane.h"
  70
  71 #include "AliTRDCalibViewer.h"
  72
  73
  74 using namespace std;
  75
  76 ClassImp(AliTRDCalibViewer)
  77
  78 //_____________________________________________________________________________
  79 AliTRDCalibViewer::AliTRDCalibViewer()
  80                   :AliBaseCalibViewer()
  81 {
  82   //
  83   // Default constructor (just call base class constructor)
  84   //
  85 }
  86
  87 //_____________________________________________________________________________
  88 AliTRDCalibViewer::AliTRDCalibViewer(const AliTRDCalibViewer &c)
  89                   :AliBaseCalibViewer(c)
  90 {
  91   //
  92   // copy constructor (just call base class copy constructor)
  93   //
  94 }
  95
  96 //_____________________________________________________________________________
  97 AliTRDCalibViewer::AliTRDCalibViewer(TTree* tree)
  98                   :AliBaseCalibViewer(tree)
  99 {
 100   //
 101   // Constructor (just call the corresponding base constructor)
 102   //
 103 }
 104
 105 //_____________________________________________________________________________
 106 AliTRDCalibViewer::AliTRDCalibViewer(const char* fileName, const char* treeName)
 107                   :AliBaseCalibViewer(fileName, treeName)
 108 {
 109    //
 110    // Constructor (just call the corresponding base constructor)
 111    //
 112 }
 113
 114 //_____________________________________________________________________________
 115 AliTRDCalibViewer& AliTRDCalibViewer::operator=(const AliTRDCalibViewer& param) {
 116   //
 117   // assignment operator
 118   //
 119   fTree = param.fTree;
 120   fTreeMustBeDeleted = param.fTreeMustBeDeleted;
 121   fListOfObjectsToBeDeleted = param.fListOfObjectsToBeDeleted;
 122   fAbbreviation = param.fAbbreviation;
 123   fAppendString = param.fAppendString;
 124   return(*this);
 125 }
 126
 127 //_____________________________________________________________________________
 128 AliTRDCalibViewer::~AliTRDCalibViewer()
 129 {
 130    //
 131    // AliTRDCalibViewer destructor
 132    // do nothing, the base class destructor will do the job
 133 }
 134
 135 /*
 136 //_____________________________________________________________________________
 137 void AliTRDCalibViewer::GetTimeInfoOCDB(const Char_t* runList, const Char_t* outFile,
 138                                         Int_t firstRun, Int_t lastRun, UInt_t infoFlags,
 139                                         const Char_t* ocdbStorage) {
 140 //
 141 //  Get time information from OCDB by calling the DumpOCDBtoTree.C macro
 142 //
 143   DumpOCDBtoTree(runList, outFile, firstRun, lastRun,
 144                  TESTBIT(infoFlags,1), TESTBIT(infoFlags,2),
 145                  TESTBIT(infoFlags,3), TESTBIT(infoFlags,4),
 146                  ocdbStorage);
 147 }
 148 */
 149
 150 //_____________________________________________________________________________
 151 const char* AliTRDCalibViewer::AddAbbreviations(char* c, Bool_t printDrawCommand){
 152    // Replace all "<variable>" with "<variable><fAbbreviation>" (Adds forgotten "~")
 153    // but take care on the statistical information, like "CEQmean_Mean"
 154    // and also take care on correct given variables, like "CEQmean~"
 155    //
 156    // For each variable out of "listOfVariables":
 157    // - 'Save' correct items:
 158    //   - form <replaceString>, take <variable>'s first char, add <removeString>, add rest of <variable>, e.g. "C!#EQmean" (<removeString> = "!#")
 159    //   - For each statistical information in "listOfNormalizationVariables":
 160    //     - ReplaceAll <variable><statistical_Information> with <replaceString><statistical_Information>
 161    //   - ReplaceAll <variable><abbreviation> with <replaceString><abbreviation>, e.g. "CEQmean~" -> "C!#EQmean~"
 162    //   - ReplaceAll <variable><appendStr> with <replaceString><appendStr>, e.g. "CEQmean.fElements" -> "C!#EQmean.fElements"
 163    //
 164    // - Do actual replacing:
 165    //   - ReplaceAll <variable> with <variable><fAbbreviation>, e.g. "CEQmean" -> "CEQmean~"
 166    //
 167    // - Undo saving:
 168    //   - For each statistical information in "listOfNormalizationVariables":
 169    //     - ReplaceAll <replaceString><statistical_Information> with <variable><statistical_Information>
 170    //   - ReplaceAll <replaceString><abbreviation> with <variable><abbreviation>, e.g. "C!#EQmean~" -> "CEQmean~"
 171    //   - ReplaceAll <replaceString><appendStr> with <variable><appendStr>, e.g. "C!#EQmean.fElements" -> "CEQmean.fElements"
 172    //
 173    // Now all the missing "~" should be added.
 174
 175    TString str(c);
 176    TString removeString = "!#";  // very unprobable combination of chars
 177    TString replaceString = "";
 178    TString searchString = "";
 179    TString normString = "";
 180    TObjArray *listOfVariables = GetListOfVariables();
 181    // variables used for mapping the pads, mcms, ...
 182    listOfVariables->Add(new TObjString("SuperModule"));
 183    listOfVariables->Add(new TObjString("Layer"));
 184    listOfVariables->Add(new TObjString("Stack"));
 185    listOfVariables->Add(new TObjString("Channel"));
 186    listOfVariables->Add(new TObjString("Row"));
 187    listOfVariables->Add(new TObjString("Column"));
 188    listOfVariables->Add(new TObjString("Chamber"));
 189    listOfVariables->Add(new TObjString("PadSuperRow"));
 190    listOfVariables->Add(new TObjString("PadSuperColumn"));
 191    listOfVariables->Add(new TObjString("MCMSuperRow"));
 192    listOfVariables->Add(new TObjString("MCMSuperColumn"));
 193    listOfVariables->Add(new TObjString("ROB"));
 194    listOfVariables->Add(new TObjString("MCM"));
 195    TObjArray *listOfNormalizationVariables = GetListOfNormalizationVariables();
 196    Int_t nVariables = listOfVariables->GetEntriesFast();
 197    Int_t nNorm = listOfNormalizationVariables->GetEntriesFast();
 198
 199    Int_t *varLengths = new Int_t[nVariables];
 200    for (Int_t i = 0; i < nVariables; i++) {
 201       varLengths[i] = ((TObjString*)listOfVariables->At(i))->String().Length();
 202    }
 203    Int_t *normLengths = new Int_t[nNorm];
 204    for (Int_t i = 0; i < nNorm; i++) {
 205       normLengths[i] = ((TObjString*)listOfNormalizationVariables->At(i))->String().Length();
 206    }
 207    Int_t *varSort = new Int_t[nVariables+1];
 208    TMath::Sort(nVariables, varLengths, varSort, kTRUE);
 209    Int_t *normSort = new Int_t[nNorm+1];
 210    TMath::Sort(nNorm, normLengths, normSort, kTRUE);
 211
 212    for (Int_t ivar = 0; ivar < nVariables; ivar++) {
 213       // ***** save correct tokens *****
 214       // first get the next variable:
 215       searchString = ((TObjString*)listOfVariables->At(varSort[ivar]))->String();
 216       // form replaceString:
 217       replaceString = "";
 218       for (Int_t i = 0; i < searchString.Length(); i++) {
 219          replaceString.Append(searchString[i]);
 220          if (i == 0) replaceString.Append(removeString);
 221       }
 222       // go through normalization:
 223       for (Int_t inorm = 0; inorm < nNorm; inorm++) {
 224         normString = ((TObjString*)listOfNormalizationVariables->At(normSort[inorm]))->String();
 225         str.ReplaceAll(searchString + normString, replaceString + normString);
 226         // like: str.ReplaceAll("CEQmean_Mean", "C!EQmean_Mean");
 227       }
 228       str.ReplaceAll(searchString + fAbbreviation, replaceString + fAbbreviation);
 229       // like: str.ReplaceAll("CEQmean~", "C!EQmean~");
 230       str.ReplaceAll(searchString + fAppendString,    replaceString + fAppendString);
 231       // like: str.ReplaceAll("CEQmean.fElements", "C!EQmean.fElements");
 232
 233       // ***** add missing extensions *****
 234       str.ReplaceAll(searchString, replaceString + fAbbreviation);
 235       // like: str.ReplaceAll("CEQmean", "C!EQmean~");
 236    }
 237
 238    // ***** undo saving *****
 239    str.ReplaceAll(removeString, "");
 240
 241    if (printDrawCommand) std::cout << "The string looks now like: " << str.Data() << std::endl;
 242    delete [] varSort;
 243    delete [] normSort;
 244    return str.Data();
 245 }
 246
 247 //_____________________________________________________________________________
 248 TObjArray* AliTRDCalibViewer::GetListOfVariables(Bool_t printList) {
 249   //
 250   // scan the tree  - produces a list of available variables in the tree
 251   // printList: print the list to the screen, after the scan is done
 252   //
 253   TObjArray* arr = new TObjArray();
 254   TObjString* str = 0;
 255   if (!fTree) {
 256     return 0;
 257   }
 258   Int_t nentries = fTree->GetListOfBranches()->GetEntries();
 259   for (Int_t i = 0; i < nentries; i++) {
 260     str = new TObjString(fTree->GetListOfBranches()->At(i)->GetName());
 261     str->String().ReplaceAll("_Mean", "");
 262     str->String().ReplaceAll("_RMS", "");
 263     str->String().ReplaceAll("_Median", "");
 264     str->String().ReplaceAll(".", "");
 265     str->String().ReplaceAll("_Run", "");
 266     str->String().ReplaceAll("_SuperModule", "");
 267     str->String().ReplaceAll("_Chamber", "");
 268     // add all the variables in the tree to a list
 269     // exception make variables which are used for mapping, specified in AddAbbreviations()
 270     // These two functions should be kept synchronized with respect to the mapping variables
 271     if (!arr->FindObject(str) &&
 272         !(str->String() == "run" ||
 273           str->String() == "SuperModule" || str->String() == "Layer" || str->String() == "Stack" ||
 274           str->String() == "Chamber" ||
 275           str->String() == "Channel" || str->String() == "Row" || str->String() == "Column" ||
 276           str->String() == "PadSuperRow" || str->String() == "PadSuperColumn" || str->String() == "MCMSuperRow"
 277           || str->String() == "MCMSuperColumn" || str->String() == "MCM" || str->String() == "ROB")) {
 278       arr->Add(str);
 279     }
 280   }
 281
 282   // loop over all friends (if there are some) and add them to the list
 283   if (fTree->GetListOfFriends()) {
 284     for (Int_t ifriend = 0; ifriend < fTree->GetListOfFriends()->GetEntries(); ifriend++){
 285       // printf("iterating through friendlist, currently at %i\n", ifriend);
 286       // printf("working with %s\n", fTree->GetListOfFriends()->At(ifriend)->ClassName());
 287       if (TString(fTree->GetListOfFriends()->At(ifriend)->ClassName()) != "TFriendElement") continue; // no friendElement found
 288       TFriendElement *friendElement = (TFriendElement*)fTree->GetListOfFriends()->At(ifriend);
 289       if (friendElement->GetTree() == 0) continue; // no tree found in friendElement
 290       // printf("friend found \n");
 291       for (Int_t i = 0; i < friendElement->GetTree()->GetListOfBranches()->GetEntries(); i++) {
 292         // printf("iterating through friendelement entries, currently at %i\n", i);
 293         str = new TObjString(friendElement->GetTree()->GetListOfBranches()->At(i)->GetName());
 294         str->String().ReplaceAll("_Mean", "");
 295         str->String().ReplaceAll("_RMS", "");
 296         str->String().ReplaceAll("_Median", "");
 297         str->String().ReplaceAll(".", "");
 298         str->String().ReplaceAll("_Run", "");
 299         str->String().ReplaceAll("_SuperModule", "");
 300         str->String().ReplaceAll("_Chamber", "");
 301         if (!(str->String() == "run" ||
 302               str->String() == "SuperModule" || str->String() == "Layer" || str->String() == "Stack" ||
 303               str->String() == "Chamber" ||
 304               str->String() == "Channel" || str->String() == "Row" || str->String() == "Column" ||
 305               str->String() == "PadSuperRow" || str->String() == "PadSuperColumn" || str->String() == "MCMSuperRow"
 306               || str->String() == "MCMSuperColumn" || str->String() == "MCM" || str->String() == "ROB")){
 307           // insert "<friendName>." at the beginning: (<friendName> is per default "R")
 308           str->String().Insert(0, ".");
 309           str->String().Insert(0, friendElement->GetName());
 310           if (!arr->FindObject(str)) {
 311             arr->Add(str);
 312           }
 313           // printf("added string %s \n", str->String().Data());
 314         }
 315       }
 316     }
 317   } // if (fTree->GetListOfFriends())
 318
 319   arr->Sort();
 320
 321   if (printList) {
 322     TIterator* iter = arr->MakeIterator();
 323     iter->Reset();
 324     TObjString* currentStr = 0;
 325     while ( (currentStr = (TObjString*)(iter->Next())) ) {
 326       std::cout << currentStr->GetString().Data() << std::endl;
 327     }
 328     delete iter;
 329   }
 330   return arr;
 331 }
 332
 333 TObjArray* AliTRDCalibViewer::GetListOfNormalizationVariables(Bool_t printList) const{
 334   //
 335   // produces a list of available variables for normalization in the tree
 336   // printList: print the list to the screen, after the scan is done
 337   //
 338    TObjArray* arr = new TObjArray();
 339    arr->Add(new TObjString("_Mean_Run"));
 340    arr->Add(new TObjString("_Mean_SuperModule"));
 341    arr->Add(new TObjString("_Mean_Chamber"));
 342    arr->Add(new TObjString("_Median_Run"));
 343    arr->Add(new TObjString("_Median_SuperModule"));
 344    arr->Add(new TObjString("_Median_Chamber"));
 345
 346    if (printList) {
 347      TIterator* iter = arr->MakeIterator();
 348      iter->Reset();
 349      TObjString* currentStr = 0;
 350      while ((currentStr = (TObjString*)(iter->Next()))) {
 351        std::cout << currentStr->GetString().Data() << std::endl;
 352      }
 353      delete iter;
 354    }
 355    return arr;
 356 }
 357
 358 void AliTRDCalibViewer::GetLayerSectorStack(TString trdString, Int_t& layerNo, Int_t& sectorNo, Int_t& stackNo) const {
 359   // Get the layer, sector and stack numbers out of a string
 360   // encoded with the following format:
 361   // Layer%dSector%dStack%d
 362
 363   //sscanf(trdString.Data(), "Layer%1dSector%02dStack%1d", &layerNo, &sectorNo, &stackNo);
 364
 365   // Coverity compliant solution (bit more cumbersome, but works) CBL
 366   TString cName = trdString.Data();
 367   Char_t  cLayer[2];
 368   Char_t  cSector[3];
 369   Char_t  cStack[2];
 370
 371   cLayer[0]  = cName[5];
 372   cLayer[1]  = 0;
 373   cSector[0] = cName[12];
 374   cSector[1] = cName[13];
 375   cSector[2] = 0;
 376   cStack[0]  = cName[19];
 377   cStack[1]  = 0;
 378
 379   layerNo    = atoi(cLayer);
 380   sectorNo   = atoi(cSector);
 381   stackNo    = atoi(cStack);
 382
 383   return;
 384 }
 385
 386 //_____________________________________________________________________________
 387 Int_t AliTRDCalibViewer::EasyDraw(const char* drawCommand, const char* sector, const char* cuts, const char* drawOptions, Bool_t writeDrawCommand) const {
 388   //
 389   // easy drawing of data, use '~' for abbreviation of '.fElements'
 390   // example: EasyDraw("CETmean~-CETmean_mean", "A", "(CETmean~-CETmean_mean)>0")
 391   // sector: sector-number - only the specified sector will be drwawn
 392   //         'A'/'C' or 'a'/'c' - side A/C will be drawn
 393   //         'ALL' - whole TPC will be drawn, projected on one side
 394   // cuts: specifies cuts
 395   // drawOptions: draw options like 'same'
 396   // writeDrawCommand: write the command, that is passed to TTree::Draw
 397   //
 398
 399   TString drawStr(drawCommand);
 400
 401   TString sectorStr(sector);
 402   Int_t layerNo = -1;
 403   Int_t sectorNo = -1;
 404   Int_t stackNo = -1;
 405   GetLayerSectorStack(sectorStr, layerNo, sectorNo, stackNo);
 406   if(layerNo==-1) {
 407      Warning("EasyDraw", "The sector string must always contain the Layer number!");
 408      return -1;
 409    }
 410    if(layerNo<0 || layerNo>5) {
 411      Warning("EasyDraw", "The Layer number must be in the range [0,5] !");
 412      return -1;
 413    }
 414    if(sectorNo!=-1 && (sectorNo<0 || sectorNo>17)) {
 415      Warning("EasyDraw", "The SuperModule number must be in the range [0,17] !");
 416      return -1;
 417    }
 418    if(stackNo!=-1 && (stackNo<0 || stackNo>4)) {
 419      Warning("EasyDraw", "The Stack number must be in the range [0,4] !");
 420      return -1;
 421    }
 422
 423    TString cutStr("");
 424
 425    Bool_t dangerousToDraw = drawStr.Contains(":") || drawStr.Contains(">>");
 426    if (dangerousToDraw) {
 427       Warning("EasyDraw", "The draw string must not contain ':' or '>>'. Using only first variable for drawing!");
 428       drawStr.Resize(drawStr.First(":"));
 429    }
 430
 431    TString drawOptionsStr("");
 432    TRandom rnd(0);
 433    Int_t rndNumber = rnd.Integer(10000);
 434
 435    if (drawOptions && strcmp(drawOptions, "") != 0)
 436       drawOptionsStr += drawOptions;
 437    else
 438       drawOptionsStr += "profcolz";
 439
 440    const Int_t gkNRows[ 5] = {16, 16, 12, 16, 16};  // number of pad rows in the chambers from each of the 5 stacks
 441
 442    // draw calibration stuff
 443    if(drawStr.Contains("Status") || drawStr.Contains("Gain") || drawStr.Contains("Noise") ||
 444       drawStr.Contains("Vdrift") || drawStr.Contains("T0") ||
 445       drawStr.Contains("gain") || drawStr.Contains("chiSquare")) {
 446      if(sectorNo==-1 && stackNo==-1) {    // plot the entire layer
 447        drawStr += Form(":PadSuperColumn%s:PadSuperRow%s>>prof", fAppendString.Data(), fAppendString.Data());
 448        drawStr += rndNumber;
 449        drawStr += "(76,-0.5,75.5,2592,-0.5,2591.5)";
 450        cutStr += Form("Layer==%d", layerNo);
 451      }
 452      else if(sectorNo!=-1 && stackNo==-1) {     // plot a sector from a layer
 453        drawStr += Form(":Column%s:PadSuperRow%s>>prof", fAppendString.Data(), fAppendString.Data());
 454        drawStr += rndNumber;
 455        drawStr += "(76,-0.5,75.5,144,-0.5,143.5)";
 456        cutStr += Form("Layer==%d && SuperModule==%d", layerNo, sectorNo);
 457      }
 458      else if(sectorNo==-1 && stackNo!=-1) {       // plot a stack from a layer
 459        drawStr += Form(":PadSuperColumn%s:Row%s>>prof", fAppendString.Data(), fAppendString.Data());
 460        drawStr += rndNumber;
 461        drawStr += Form("(%d,-0.5,%d-0.5,2592,-0.5,2591.5)", gkNRows[stackNo], gkNRows[stackNo]);
 462        cutStr += Form("Layer==%d && Stack==%d", layerNo, stackNo);
 463      }
 464      else {                // the layer, sector and stack are determined -> so plot a chamber
 465        drawStr += Form(":Column%s:Row%s>>prof", fAppendString.Data(), fAppendString.Data());
 466        drawStr += rndNumber;
 467        drawStr += Form("(%d,-0.5,%d-0.5,144,-0.5,143.5)", gkNRows[stackNo], gkNRows[stackNo]);
 468        cutStr += Form("Layer==%d && SuperModule==%d && Stack==%d", layerNo, sectorNo, stackNo);
 469      }
 470    }
 471    // draw FEE stuff
 472    else if(drawStr.Contains("SORandEOR") ||
 473            drawStr.Contains("gsmSOR") || drawStr.Contains("gsmDelta") ||
 474            drawStr.Contains("nimSOR") || drawStr.Contains("nimDelta") ||
 475            drawStr.Contains("nevSOR") || drawStr.Contains("nevDelta") ||
 476            drawStr.Contains("nptSOR") || drawStr.Contains("nptDelta")) {
 477      if(sectorNo==-1 && stackNo==-1) {    // plot the entire layer
 478        drawStr += Form(":MCMSuperColumn%s:MCMSuperRow%s>>prof", fAppendString.Data(), fAppendString.Data());
 479        drawStr += rndNumber;
 480        drawStr += "(76,-0.5,75.5,144,-0.5,143.5)";
 481        cutStr += Form("Layer==%d", layerNo);
 482      }
 483      else if(sectorNo!=-1 && stackNo==-1) {     // plot a sector from a layer
 484        drawStr += Form(":MCMSuperColumn%s:MCMSuperRow%s>>prof", fAppendString.Data(), fAppendString.Data());
 485        drawStr += rndNumber;
 486        drawStr += "(76,-0.5,75.5,144,-0.5,143.5)";
 487        cutStr += Form("Layer==%d && SuperModule==%d", layerNo, sectorNo);
 488      }
 489      else if(sectorNo==-1 && stackNo!=-1) {       // plot a stack from a layer
 490        drawStr += Form(":MCMSuperColumn%s:MCMSuperRow%s>>prof", fAppendString.Data(), fAppendString.Data());
 491        drawStr += rndNumber;
 492        //       drawStr += Form("(%d,-0.5,%d-0.5,2592,-0.5,2591.5)", gkNRows[stackNo], gkNRows[stackNo]);
 493        drawStr += "(76,-0.5,75.5,144,-0.5,143.5)";
 494        cutStr += Form("Layer==%d && Stack==%d", layerNo, stackNo);
 495      }
 496      else {                // the layer, sector and stack are determined -> so plot a chamber
 497        drawStr += Form(":ROB%s:MCM%s>>prof", fAppendString.Data(), fAppendString.Data());
 498        drawStr += rndNumber;
 499        drawStr += Form("(16,-0.5,15.5,%d,-0.5,%d-0.5)", gkNRows[stackNo]/2, gkNRows[stackNo]/2);
 500        cutStr += Form("Layer==%d && SuperModule==%d && Stack==%d", layerNo, sectorNo, stackNo);
 501      }
 502    }
 503    // draw alignment stuff
 504    else if(drawStr.Contains("Align")) {
 505      if(sectorNo==-1 && stackNo==-1) {  // plot the entire layer
 506        drawStr += ":SuperModule:Stack>>prof";
 507        drawStr += rndNumber;
 508        drawStr += "(5,-0.5,4.5,18,-0.5,17.5)";
 509        cutStr += Form("Layer==%d", layerNo);
 510      }
 511      else if(sectorNo!=-1 && stackNo==-1) {     // plot a sector from a layer
 512        drawStr += ":SuperModule:Stack>>prof";
 513        drawStr += rndNumber;
 514        drawStr += Form("(5,-0.5,4.5,1,%f,%f)", sectorNo-0.5, sectorNo+0.5);
 515        cutStr += Form("Layer==%d && SuperModule==%d", layerNo, sectorNo);
 516      }
 517      else if(sectorNo==-1 && stackNo!=-1) {       // plot a stack from a layer
 518        drawStr += ":SuperModule:Stack>>prof";
 519        drawStr += rndNumber;
 520        drawStr += Form("(1,%f,%f,18,-0.5,17.5)", stackNo-0.5, stackNo+0.5);
 521        cutStr += Form("Layer==%d && Stack==%d", layerNo, stackNo);
 522      }
 523      else {                // the layer, sector and stack are determined -> so plot a chamber
 524        drawStr += ":SuperModule:Stack>>prof";
 525        drawStr += rndNumber;
 526        drawStr += Form("(1,%f,%f,1,%f,%f)", stackNo-0.5, stackNo+0.5, sectorNo-0.5, sectorNo+0.5);
 527        cutStr += Form("Layer==%d && SuperModule==%d && Stack==%d", layerNo, sectorNo, stackNo);
 528      }
 529    }
 530
 531
 532    if (cuts && cuts[0] != 0) {
 533       if (cutStr.Length() != 0) cutStr += "&& ";
 534       cutStr += "(";
 535       cutStr += cuts;
 536       cutStr += ")";
 537    }
 538    drawStr.ReplaceAll(fAbbreviation, fAppendString);
 539    cutStr.ReplaceAll(fAbbreviation, fAppendString);
 540    if (writeDrawCommand) std::cout << "fTree->Draw(\"" << drawStr << "\", \"" <<  cutStr << "\", \"" << drawOptionsStr << "\");" << std::endl;
 541    Int_t returnValue = fTree->Draw(drawStr.Data(), cutStr.Data(), drawOptionsStr.Data());
 542    TString profName("prof");
 543    profName += rndNumber;
 544    TObject *obj = gDirectory->Get(profName.Data());
 545    // set the names of the axes
 546    TH1 *histObj = (TH1*)obj;
 547    if(drawStr.Contains("Status") || drawStr.Contains("Gain") || drawStr.Contains("Noise") ||
 548       drawStr.Contains("Vdrift") || drawStr.Contains("T0") ||
 549       drawStr.Contains("gain") || drawStr.Contains("chiSquare")) {
 550      histObj->GetXaxis()->SetTitle("Row");
 551      histObj->GetYaxis()->SetTitle("Column");
 552    }
 553    else if(drawStr.Contains("SORandEOR") ||
 554            drawStr.Contains("gsmSOR") || drawStr.Contains("gsmDelta") ||
 555            drawStr.Contains("nimSOR") || drawStr.Contains("nimDelta") ||
 556            drawStr.Contains("nevSOR") || drawStr.Contains("nevDelta") ||
 557            drawStr.Contains("nptSOR") || drawStr.Contains("nptDelta")) {
 558      histObj->GetXaxis()->SetTitle("MCM Row");
 559      histObj->GetYaxis()->SetTitle("MCM Column");
 560    }
 561    else if(drawStr.Contains("Align")) {
 562      histObj->GetXaxis()->SetTitle("Stack");
 563      histObj->GetYaxis()->SetTitle("Sector");
 564    }
 565
 566    if (obj && obj->InheritsFrom("TH1")) FormatHistoLabels((TH1*)obj);
 567    return returnValue;
 568 }
 569
 570 //_____________________________________________________________________________
 571 Int_t AliTRDCalibViewer::EasyDraw1D(const char* drawCommand, const char* sector, const char* cuts, const char* drawOptions, Bool_t writeDrawCommand) const {
 572   //
 573   // easy drawing of data, use '~' for abbreviation of '.fElements'
 574   // example: EasyDraw("CETmean~-CETmean_mean", "A", "(CETmean~-CETmean_mean)>0")
 575   // sector: sector-number - the specified sector will be drwawn
 576   //         'A'/'C' or 'a'/'c' - side A/C will be drawn
 577   //         'ALL' - whole TPC will be drawn, projected on one side
 578   // cuts: specifies cuts
 579   // drawOptions: draw options like 'same'
 580   // writeDrawCommand: write the command, that is passed to TTree::Draw
 581   //
 582
 583    TString drawStr(drawCommand);
 584
 585    TString sectorStr(sector);
 586    Int_t layerNo = -1;
 587    Int_t sectorNo = -1;
 588    Int_t stackNo = -1;
 589    GetLayerSectorStack(sectorStr, layerNo, sectorNo, stackNo);
 590    if(layerNo==-1) {
 591      Warning("EasyDraw", "The sector string must always contain the Layer number!");
 592      return -1;
 593    }
 594    if(layerNo<0 || layerNo>5) {
 595      Warning("EasyDraw", "The Layer number must be in the range [0,5] !");
 596      return -1;
 597    }
 598    if(sectorNo!=-1 && (sectorNo<0 || sectorNo>17)) {
 599      Warning("EasyDraw", "The Sector number must be in the range [0,17] !");
 600      return -1;
 601    }
 602    if(stackNo!=-1 && (stackNo<0 || stackNo>4)) {
 603      Warning("EasyDraw", "The Stack number must be in the range [0,4] !");
 604      return -1;
 605    }
 606
 607    TString drawOptionsStr(drawOptions);
 608    TString cutStr("");
 609
 610    if(sectorNo==-1 && stackNo==-1)     // plot the entire layer
 611      cutStr += Form("Layer==%d", layerNo);
 612    else if(sectorNo!=-1 && stackNo==-1)      // plot a sector from a layer
 613      cutStr += Form("Layer==%d && SuperModule==%d", layerNo, sectorNo);
 614    else if(sectorNo==-1 && stackNo!=-1)        // plot a stack from a layer
 615      cutStr += Form("Layer==%d && Stack==%d", layerNo, stackNo);
 616    else                 // the layer, sector and stack are determined -> so plot a chamber
 617      cutStr += Form("Layer==%d && SuperModule==%d && Stack==%d", layerNo, sectorNo, stackNo);
 618
 619    if(cuts && cuts[0] != 0) {
 620       if (cutStr.Length() != 0) cutStr += "&& ";
 621       cutStr += "(";
 622       cutStr += cuts;
 623       cutStr += ")";
 624    }
 625
 626    drawStr.ReplaceAll(fAbbreviation, fAppendString);
 627    cutStr.ReplaceAll(fAbbreviation, fAppendString);
 628    if (writeDrawCommand) std::cout << "fTree->Draw(\"" << drawStr << "\", \"" <<  cutStr << "\", \"" << drawOptionsStr << "\");" << std::endl;
 629    Int_t returnValue = fTree->Draw(drawStr.Data(), cutStr.Data(), drawOptionsStr.Data());
 630    if (returnValue == -1) return -1;
 631
 632    TObject *obj = (gPad) ? gPad->GetPrimitive("htemp") : 0;
 633    if (!obj) obj = (TH1F*)gDirectory->Get("htemp");
 634    if (!obj) obj = gPad->GetPrimitive("tempHist");
 635    if (!obj) obj = (TH1F*)gDirectory->Get("tempHist");
 636    if (!obj) obj = gPad->GetPrimitive("Graph");
 637    if (!obj) obj = (TH1F*)gDirectory->Get("Graph");
 638    if (obj && obj->InheritsFrom("TH1")) FormatHistoLabels((TH1*)obj);
 639    return returnValue;
 640 }
 641
 642 //_____________________________________________________________________________
 643 Int_t AliTRDCalibViewer::EasyDraw(const char* drawCommand, Int_t chamber, const char* cuts, const char* drawOptions, Bool_t writeDrawCommand) const {
 644   //
 645   // easy drawing of data, use '~' for abbreviation of '.fElements'
 646   // example: EasyDraw("CETmean~-CETmean_mean", 34, "(CETmean~-CETmean_mean)>0")
 647   // sector: sector-number - only the specified sector will be drwawn
 648   // cuts: specifies cuts
 649   // drawOptions: draw options like 'same'
 650   // writeDrawCommand: write the command, that is passed to TTree::Draw
 651   //
 652   if(chamber >= 0 && chamber < 540) {
 653     Int_t superModuleNo = chamber/30;
 654     Int_t stackNo = (chamber%30)/6;
 655     Int_t layerNo = (chamber%30)%6;
 656     char sectorChr[22];
 657     snprintf(sectorChr,22, "Layer%iSector%iStack%i", layerNo, superModuleNo, stackNo);
 658     return EasyDraw(drawCommand, sectorChr, cuts, drawOptions, writeDrawCommand);
 659   }
 660   Error("EasyDraw","The TRD contains only chamber from 0 to 539");
 661   return -1;
 662 }
 663
 664 //_____________________________________________________________________________
 665 Int_t AliTRDCalibViewer::EasyDraw1D(const char* drawCommand, Int_t chamber, const char* cuts, const char* drawOptions, Bool_t writeDrawCommand) const {
 666   //
 667   // easy drawing of data, use '~' for abbreviation of '.fElements'
 668   // example: EasyDraw("CETmean~-CETmean_mean", 34, "(CETmean~-CETmean_mean)>0")
 669   // sector: sector-number - the specified sector will be drwawn
 670   // cuts: specifies cuts
 671   // drawOptions: draw options like 'same'
 672   // writeDrawCommand: write the command, that is passed to TTree::Draw
 673   //
 674
 675   if (chamber >= 0 && chamber < 539) {
 676     Int_t superModuleNo = chamber/30;
 677     Int_t stackNo = (chamber%30)/6;
 678     Int_t layerNo = (chamber%30)%6;
 679     char sectorChr[22];
 680     snprintf(sectorChr,22, "Layer%iSector%iStack%i", layerNo, superModuleNo, stackNo);
 681     return EasyDraw1D(drawCommand, sectorChr, cuts, drawOptions, writeDrawCommand);
 682   }
 683   Error("EasyDraw1D","The TRD contains only chambers from 0 to 539");
 684   return -1;
 685 }
 686
 687 //_____________________________________________________________________________
 688 Bool_t AliTRDCalibViewer::DumpOCDBtoTreeDetails(const Char_t* runListFilename,
 689                                                 const Char_t* outFilename,
 690                                                 Int_t firstRun, Int_t lastRun,
 691                                                 const Char_t* storage,
 692                                                 Int_t version,
 693                                                 Int_t subVersion,
 694                                                 Bool_t getCalibs,
 695                                                 Bool_t getDCS,
 696                                                 Bool_t getAlign) {
 697   //
 698   // Retrieve TRD OCDB information for a given run list/range
 699   //
 700
 701   if(runListFilename[0]!='\0' && firstRun==-1 && lastRun==-1) {
 702     cout << "AliTRDCalibViewer::DumpOCDBtoTreeDetails(): You must provide at least a run range or an ascii filename with run numbers"
 703          << endl;
 704     return kFALSE;
 705   }
 706   // initialize the OCDB manager
 707   TString storageString = storage;
 708   if(storageString.Contains("alien://")) {
 709     TGrid::Connect("alien://");
 710   }
 711   AliCDBManager *manager = AliCDBManager::Instance();
 712   if(storage[0]!='\0') {
 713     manager->SetDefaultStorage(storage);
 714   }
 715   else {
 716     if(!manager->IsDefaultStorageSet()) {
 717       cout << "AliTRDCalibViewer::DumpOCDBtoTreeDetails(): Default OCDB storage not set!!" << endl;
 718       return kFALSE;
 719     }
 720   }
 721   manager->SetRun(1);
 722
 723   // open the ascii file
 724   ifstream in;
 725   if(runListFilename[0]!='\0')
 726     in.open(runListFilename);
 727
 728   // initialize the tree streamer
 729   if(outFilename[0]=='\0') outFilename = "trdDetails.root";
 730   TString calibFilename = outFilename;
 731
 732   TTreeSRedirector *treeStreamer = new TTreeSRedirector(calibFilename.Data());
 733
 734   Int_t currRun;
 735   if(runListFilename[0]=='\0' && firstRun!=-1 && lastRun!=-1)
 736     currRun = firstRun;
 737
 738   TVectorD runs;
 739
 740   // loop over runs
 741   while(1) {
 742     if(runListFilename[0]!='\0') {
 743       if(!(in>>currRun)) continue;
 744       if(currRun < (firstRun==-1 ? 0 : firstRun) ||
 745          currRun > (lastRun==-1 ? 999999999 : lastRun))
 746         continue;
 747     }
 748     else {
 749       if(currRun>lastRun) break;
 750     }
 751     cout << "run = " << currRun << endl;
 752     manager->SetRun(currRun);
 753
 754     // Get GRP data. If there is no proper GRP object for this run than
 755     // this run is aborted
 756     AliCDBEntry *entry = manager->Get("GRP/GRP/Data");
 757     AliGRPObject* grpObject = 0;
 758     if(entry) {
 759       entry->SetOwner(kFALSE);
 760       grpObject = dynamic_cast<AliGRPObject*>(entry->GetObject());
 761     }
 762     else {
 763       currRun++;
 764       //      continue;
 765       //      return kFALSE;
 766     }
 767     if(!grpObject)
 768       cout << "No GRP info available for this run " << endl;
 769
 770     time_t startTimeGRP = 0;
 771     TObjString runType("");
 772     if(grpObject) {
 773       startTimeGRP = grpObject->GetTimeStart();
 774       TTimeStamp start(grpObject->GetTimeStart());
 775       TTimeStamp end(grpObject->GetTimeEnd());
 776       cout << "Start time: " << start.GetDate()/10000 << "/"
 777            << (start.GetDate()/100)-(start.GetDate()/10000)*100 << "/"
 778            << start.GetDate()%100 << "   "
 779            << start.GetTime()/10000 << ":"
 780            << (start.GetTime()/100)-(start.GetTime()/10000)*100 << ":"
 781            << start.GetTime()%100 << endl;
 782       cout << "End time: " << end.GetDate()/10000 << "/"
 783            << (end.GetDate()/100)-(end.GetDate()/10000)*100 << "/"
 784            << end.GetDate()%100 << "   "
 785            << end.GetTime()/10000 << ":"
 786            << (end.GetTime()/100)-(end.GetTime()/10000)*100 << ":"
 787            << end.GetTime()%100 << endl;
 788       cout << "Run type = " << grpObject->GetRunType().Data() << endl;
 789       runType = grpObject->GetRunType().Data();
 790     }
 791
 792     // gain
 793     AliTRDCalDet *chamberGainFactor = 0;
 794     if(getCalibs) {
 795       entry = manager->Get("TRD/Calib/ChamberGainFactor", currRun, version, subVersion);
 796       if(entry) {
 797         entry->SetOwner(kFALSE);
 798         chamberGainFactor = (AliTRDCalDet*)entry->GetObject();
 799       }
 800     }
 801     AliTRDCalPad *padGainFactor = 0;
 802     if(getCalibs) {
 803       entry = manager->Get("TRD/Calib/LocalGainFactor", currRun, version, subVersion);
 804       if(entry) {
 805         entry->SetOwner(kFALSE);
 806         padGainFactor = (AliTRDCalPad*)entry->GetObject();
 807       }
 808     }
 809     Double_t runMeanGain, runRMSGain;
 810     TVectorD chamberMeanGain(AliTRDcalibDB::kNdet);
 811     TVectorD chamberRMSGain(AliTRDcalibDB::kNdet);
 812     TVectorD smMeanGain(AliTRDcalibDB::kNsector);
 813     TVectorD smRMSGain(AliTRDcalibDB::kNsector);
 814     for(Int_t iNdet=0; iNdet<AliTRDcalibDB::kNdet; iNdet++) {chamberMeanGain[iNdet] = 0.0; chamberRMSGain[iNdet] = 0.0;}
 815     for(Int_t iSm=0; iSm<AliTRDcalibDB::kNsector; iSm++) {smMeanGain[iSm] = 0.0; smRMSGain[iSm] = 0.0;}
 816     TString parName("Gain");
 817     if(getCalibs)
 818       ProcessTRDCalibArray(chamberGainFactor, padGainFactor,
 819                            parName,
 820                            runMeanGain, runRMSGain,
 821                            chamberMeanGain, chamberRMSGain,
 822                            smMeanGain, smRMSGain);
 823
 824     // noise/pedestals
 825     AliTRDCalDet *chamberNoise = 0;
 826     if(getCalibs) {
 827       entry = manager->Get("TRD/Calib/DetNoise", currRun, version, subVersion);
 828       if(entry) {
 829         entry->SetOwner(kFALSE);
 830         chamberNoise = (AliTRDCalDet*)entry->GetObject();
 831       }
 832     }
 833     AliTRDCalPad *padNoise = 0;
 834     if(getCalibs) {
 835       entry = manager->Get("TRD/Calib/PadNoise", currRun, version, subVersion);
 836       if(entry) {
 837         entry->SetOwner(kFALSE);
 838         padNoise = (AliTRDCalPad*)entry->GetObject();
 839       }
 840     }
 841     Double_t runMeanNoise, runRMSNoise;
 842     TVectorD chamberMeanNoise(AliTRDcalibDB::kNdet);
 843     TVectorD chamberRMSNoise(AliTRDcalibDB::kNdet);
 844     TVectorD smMeanNoise(AliTRDcalibDB::kNsector);
 845     TVectorD smRMSNoise(AliTRDcalibDB::kNsector);
 846     for(Int_t iNdet=0; iNdet<AliTRDcalibDB::kNdet; iNdet++) {chamberMeanNoise[iNdet] = 0.0; chamberRMSNoise[iNdet] = 0.0;}
 847     for(Int_t iSm=0; iSm<AliTRDcalibDB::kNsector; iSm++) {smMeanNoise[iSm] = 0.0; smRMSNoise[iSm] = 0.0;}
 848     parName = "Noise";
 849     if(getCalibs)
 850       ProcessTRDCalibArray(chamberNoise, padNoise,
 851                            parName,
 852                            runMeanNoise, runRMSNoise,
 853                            chamberMeanNoise, chamberRMSNoise,
 854                            smMeanNoise, smRMSNoise);
 855
 856     // vdrift
 857     AliTRDCalDet *chamberVdrift = 0;
 858     if(getCalibs) {
 859       entry = manager->Get("TRD/Calib/ChamberVdrift", currRun, version, subVersion);
 860       if(entry) {
 861         entry->SetOwner(kFALSE);
 862         chamberVdrift = (AliTRDCalDet*)entry->GetObject();
 863       }
 864     }
 865     AliTRDCalPad *padVdrift = 0;
 866     if(getCalibs) {
 867       entry = manager->Get("TRD/Calib/LocalVdrift", currRun, version, subVersion);
 868       if(entry) {
 869         entry->SetOwner(kFALSE);
 870         padVdrift = (AliTRDCalPad*)entry->GetObject();
 871       }
 872     }
 873     Double_t runMeanVdrift, runRMSVdrift;
 874     TVectorD chamberMeanVdrift(AliTRDcalibDB::kNdet);
 875     TVectorD chamberRMSVdrift(AliTRDcalibDB::kNdet);
 876     TVectorD smMeanVdrift(AliTRDcalibDB::kNsector);
 877     TVectorD smRMSVdrift(AliTRDcalibDB::kNsector);
 878     for(Int_t iNdet=0; iNdet<AliTRDcalibDB::kNdet; iNdet++) {chamberMeanVdrift[iNdet] = 0.0; chamberRMSVdrift[iNdet] = 0.0;}
 879     for(Int_t iSm=0; iSm<AliTRDcalibDB::kNsector; iSm++) {smMeanVdrift[iSm] = 0.0; smRMSVdrift[iSm] = 0.0;}
 880     parName = "Vdrift";
 881     if(getCalibs)
 882       ProcessTRDCalibArray(chamberVdrift, padVdrift,
 883                            parName,
 884                            runMeanVdrift, runRMSVdrift,
 885                            chamberMeanVdrift, chamberRMSVdrift,
 886                            smMeanVdrift, smRMSVdrift);
 887
 888     // T0
 889     AliTRDCalDet *chamberT0 = 0;
 890     if(getCalibs) {
 891       entry = manager->Get("TRD/Calib/ChamberT0", currRun, version, subVersion);
 892       if(entry) {
 893         entry->SetOwner(kFALSE);
 894         chamberT0 = (AliTRDCalDet*)entry->GetObject();
 895       }
 896     }
 897     AliTRDCalPad *padT0 = 0;
 898     if(getCalibs) {
 899       entry = manager->Get("TRD/Calib/LocalT0", currRun, version, subVersion);
 900       if(entry) {
 901         entry->SetOwner(kFALSE);
 902         padT0 = (AliTRDCalPad*)entry->GetObject();
 903       }
 904     }
 905     Double_t runMeanT0, runRMST0;
 906     TVectorD chamberMeanT0(AliTRDcalibDB::kNdet);
 907     TVectorD chamberRMST0(AliTRDcalibDB::kNdet);
 908     TVectorD smMeanT0(AliTRDcalibDB::kNsector);
 909     TVectorD smRMST0(AliTRDcalibDB::kNsector);
 910     for(Int_t iNdet=0; iNdet<AliTRDcalibDB::kNdet; iNdet++) {chamberMeanT0[iNdet] = 0.0; chamberRMST0[iNdet] = 0.0;}
 911     for(Int_t iSm=0; iSm<AliTRDcalibDB::kNsector; iSm++) {smMeanT0[iSm] = 0.0; smRMST0[iSm] = 0.0;}
 912     parName = "T0";
 913     if(getCalibs)
 914       ProcessTRDCalibArray(chamberT0, padT0,
 915                            parName,
 916                            runMeanT0, runRMST0,
 917                            chamberMeanT0, chamberRMST0,
 918                            smMeanT0, smRMST0);
 919
 920     // status
 921     AliTRDCalChamberStatus* chamberStatus = 0;
 922     if(getCalibs) {
 923       entry = manager->Get("TRD/Calib/ChamberStatus", currRun, version, subVersion);
 924       if(entry) {
 925         entry->SetOwner(kFALSE);
 926         chamberStatus = (AliTRDCalChamberStatus*)entry->GetObject();
 927       }
 928     }
 929     AliTRDCalPadStatus *padStatus = 0;
 930     if(getCalibs) {
 931       entry = manager->Get("TRD/Calib/PadStatus", currRun, version, subVersion);
 932       if(entry) {
 933         entry->SetOwner(kFALSE);
 934         padStatus = (AliTRDCalPadStatus*)entry->GetObject();
 935       }
 936     }
 937
 938     // DCS FEE information
 939     TObjArray *dcsArray = 0;
 940     if(getDCS) {
 941       entry = manager->Get("TRD/Calib/DCS");
 942       if(entry) {
 943         entry->SetOwner(kTRUE);
 944         dcsArray = (TObjArray*)entry->GetObject();
 945       }
 946     }
 947     AliTRDCalDCSv2 *dcsSOR = 0;
 948     AliTRDCalDCSv2 *dcsEOR = 0;
 949     if(getDCS && dcsArray) {
 950       dcsSOR = (AliTRDCalDCSv2*)dcsArray->At(0);
 951       dcsEOR = (AliTRDCalDCSv2*)dcsArray->At(1);
 952     }
 953
 954     // Alignment information
 955     // get the geometry from OCDB
 956     TGeoManager *geoMan = 0x0;
 957     if(getAlign) {
 958       entry=manager->Get("GRP/Geometry/Data");
 959       if(entry)
 960         geoMan=(TGeoManager*)entry->GetObject();
 961       else
 962         cout << "Cannot get an entry for the geometry storage" << endl;
 963     }
 964     // get the alignment from OCDB
 965     AliTRDalignment *alignMan=0;
 966     if(getAlign && geoMan) {
 967       entry=manager->Get("TRD/Align/Data", currRun, version, subVersion);
 968       if(entry) {
 969         alignMan = new AliTRDalignment();
 970         cout << "storage for alignment = " << manager->GetDefaultStorage()->GetURI().Data() << endl;
 971         alignMan->ReadDB(manager->GetDefaultStorage()->GetURI().Data(), "TRD/Align/Data", currRun, version, subVersion);
 972       }
 973       else {
 974         cout << "Cannot get an entry for the alignment info" << endl;
 975       }
 976     }
 977
 978     Int_t kSuperModuleStatus[18] = {1, 1, 0, 0, 0, 0,     // super module status (1- installed, 0- not installed)
 979                                     0, 1, 1, 1, 1, 0,
 980                                     0, 0, 0, 0, 0, 1};
 981     Int_t kNRows[ 5] = {16, 16, 12, 16, 16};  // number of pad rows in the chambers from each of the 5 stacks
 982     Int_t kNCols = 144;          // number of pad columns in the chambers from each of the 18 supermodules
 983     Int_t kROB[5] = {8, 8, 6, 8, 8};   // number of read out boards(ROB) per chamber (6 in stack 2 and 8 in the rest)
 984     Int_t kMCM = 16;                   // number of MCMs per ROB
 985     for(Short_t iLayer=0; iLayer<AliTRDgeometry::kNlayer; iLayer++) {   // loop over layers
 986       for(Short_t iSector=0; iSector<AliTRDgeometry::kNsector; iSector++) {  // loop over supermodules
 987         if(kSuperModuleStatus[iSector]==0)
 988           continue;
 989         Double_t alignSMPars[6];
 990         for(Int_t ipar=0; ipar<6; ipar++) alignSMPars[ipar]=0.0;
 991         if(getAlign && alignMan)
 992           alignMan->GetSm(iSector, alignSMPars);
 993         for(Short_t iStack=0; iStack<AliTRDgeometry::kNstack; iStack++) {    // loop over stacks
 994           Short_t chamberNo = AliTRDgeometry::GetDetector(iLayer, iStack, iSector);
 995           AliTRDCalROC *gainROC = 0;
 996           if(padGainFactor) gainROC = padGainFactor->GetCalROC(chamberNo);
 997           AliTRDCalROC *noiseROC = 0;
 998           if(padNoise) noiseROC = padNoise->GetCalROC(chamberNo);
 999           AliTRDCalROC *vdriftROC = 0;
1000           if(padVdrift) vdriftROC = padVdrift->GetCalROC(chamberNo);
1001           AliTRDCalROC *t0ROC = 0;
1002           if(t0ROC) t0ROC = padT0->GetCalROC(chamberNo);
1003           AliTRDCalSingleChamberStatus *statusROC = 0;
1004           if(padStatus) statusROC = padStatus->GetCalROC(chamberNo);
1005           TVectorD channelVector(kNRows[iStack]*kNCols);
1006           TVectorD rowVector(kNRows[iStack]*kNCols);
1007           TVectorD colVector(kNRows[iStack]*kNCols);
1008           TVectorD statusVector(kNRows[iStack]*kNCols);
1009           TVectorD gainVector(kNRows[iStack]*kNCols);
1010           TVectorD noiseVector(kNRows[iStack]*kNCols);
1011           TVectorD vdriftVector(kNRows[iStack]*kNCols);
1012           TVectorD t0Vector(kNRows[iStack]*kNCols);
1013           TVectorD padSuperRowVector(kNRows[iStack]*kNCols);
1014           TVectorD padSuperColumnVector(kNRows[iStack]*kNCols);
1015           for(Int_t ipar=0; ipar<kNRows[iStack]*kNCols; ipar++) {
1016             channelVector[ipar] = 0; rowVector[ipar] = 0; colVector[ipar] = 0;
1017             statusVector[ipar] = 0; gainVector[ipar] = 0; noiseVector[ipar] = 0;
1018             vdriftVector[ipar] = 0; t0Vector[ipar] = 0; padSuperRowVector[ipar] = 0;
1019             padSuperColumnVector[ipar] = 0;
1020           }
1021           Int_t index = 0;
1022           if(getCalibs) {
1023             for(Short_t iRow=0; iRow<kNRows[iStack]; iRow++) {   // loop over pad rows
1024               for(Short_t iCol=0; iCol<kNCols; iCol++) {    // loop over pad columns
1025                 Short_t padSuperRow = iRow;
1026                 for(Int_t i=0; i<iStack; i++) padSuperRow = padSuperRow + kNRows[i];
1027                 padSuperRowVector[index] = padSuperRow;
1028                 Short_t padSuperColumn = iCol;
1029                 for(Int_t i=0; i<iSector; i++) padSuperColumn = padSuperColumn + kNCols;
1030                 padSuperColumnVector[index] = padSuperColumn;
1031                 Short_t channelNo = -1;
1032                 Float_t gain = -99.;
1033                 if(gainROC && chamberGainFactor) {
1034                   channelNo = gainROC->GetChannel(iCol, iRow);
1035                   gain = chamberGainFactor->GetValue(chamberNo) * gainROC->GetValue(iCol, iRow);
1036                 }
1037                 Float_t noise = -99.;
1038                 if(noiseROC && chamberNoise)
1039                   noise = chamberNoise->GetValue(chamberNo) * noiseROC->GetValue(iCol, iRow);
1040                 Float_t vdrift = -99.;
1041                 if(vdriftROC && chamberVdrift)
1042                   vdrift = chamberVdrift->GetValue(chamberNo) * vdriftROC->GetValue(iCol, iRow);
1043                 Float_t t0 = -99.;
1044                 if(t0ROC && chamberT0)
1045                   t0 = chamberT0->GetValue(chamberNo) + t0ROC->GetValue(iCol, iRow);
1046                 Int_t status = -99;
1047                 if(statusROC)
1048                   status = statusROC->GetStatus(iCol, iRow);
1049                 channelVector[index] = channelNo;
1050                 rowVector[index] = iRow;
1051                 colVector[index] = iCol;
1052                 statusVector[index] = status;
1053                 gainVector[index] = gain;
1054                 noiseVector[index] = noise;
1055                 vdriftVector[index] = vdrift;
1056                 t0Vector[index] = t0;
1057                 index++;
1058               }  // end loop over pad columns
1059             }  // end loop over pad rows
1060           }   // end if(getCalibs)
1061
1062           // get the dcs information
1063           AliTRDCalDCSFEEv2 *dcsfeeSOR = 0;
1064           AliTRDCalDCSFEEv2 *dcsfeeEOR = 0;
1065           if(getDCS) {
1066             if(dcsSOR) dcsfeeSOR = dcsSOR->GetCalDCSFEEObj(chamberNo);
1067             if(dcsEOR) dcsfeeEOR = dcsEOR->GetCalDCSFEEObj(chamberNo);
1068           }
1069
1070           Bool_t sorAndEor = kFALSE;
1071           if(getDCS && dcsfeeSOR && dcsfeeEOR) sorAndEor = kTRUE;
1072           if(getDCS && !dcsfeeSOR && dcsfeeEOR) dcsfeeSOR = dcsfeeEOR;
1073           TVectorD robVector(kROB[iStack]*kMCM);
1074           TVectorD mcmVector(kROB[iStack]*kMCM);
1075           TVectorD sorandeorVector(kROB[iStack]*kMCM);
1076           TVectorD gsmSorVector(kROB[iStack]*kMCM);
1077           TVectorD gsmDeltaVector(kROB[iStack]*kMCM);
1078           TVectorD nimSorVector(kROB[iStack]*kMCM);
1079           TVectorD nimDeltaVector(kROB[iStack]*kMCM);
1080           TVectorD nevSorVector(kROB[iStack]*kMCM);
1081           TVectorD nevDeltaVector(kROB[iStack]*kMCM);
1082           TVectorD nptSorVector(kROB[iStack]*kMCM);
1083           TVectorD nptDeltaVector(kROB[iStack]*kMCM);
1084           TVectorD mcmSuperRowVector(kROB[iStack]*kMCM);
1085           TVectorD mcmSuperColumnVector(kROB[iStack]*kMCM);
1086           for(Int_t ipar=0; ipar<kROB[iStack]*kMCM; ipar++) {
1087             robVector[ipar] = 0; mcmVector[ipar] = 0; sorandeorVector[ipar] = 0;
1088             gsmSorVector[ipar] = 0; gsmDeltaVector[ipar] = 0; nimSorVector[ipar] = 0;
1089             nimDeltaVector[ipar] = 0; nevSorVector[ipar] = 0; nevDeltaVector[ipar] = 0;
1090             nptSorVector[ipar] = 0; nptDeltaVector[ipar] = 0; mcmSuperRowVector[ipar] = 0;
1091             mcmSuperColumnVector[ipar] = 0;
1092           }
1093
1094           Int_t robsRowDirection = kNRows[iStack]/4;    // 4 or 3 ROBs per chamber in row direction
1095           Int_t index1 = 0;
1096           if(getDCS && (dcsfeeSOR || dcsfeeEOR) && dcsfeeSOR->GetStatusBit()==0) {
1097             for(Int_t iROB=0; iROB<kROB[iStack]; iROB++) { // loop over ROBs
1098               for(Int_t iMCM=0; iMCM<kMCM; iMCM++) {  // loop over MCMs
1099                 Short_t superRowMCM = iMCM%4;            // 4 MCMs per ROB in row direction
1100                 superRowMCM += 4*(iROB%robsRowDirection);   // now we have the row of this MCM inside one chamber
1101                 for(Int_t kk=0; kk<iStack; kk++) superRowMCM += kNRows[kk];   // add number of rows in previous stacks
1102                 Short_t superColumnMCM = iMCM/4;        // 4 MCMs per ROB in column direction
1103                 superColumnMCM += 4*(iROB/robsRowDirection);    // should yield 0 or 1 (2 ROBs per chamber in col direction)
1104                 superColumnMCM += iSector*8;
1105                 mcmSuperRowVector[index1] = superRowMCM;
1106                 mcmSuperColumnVector[index1] = superColumnMCM;
1107                 Int_t gsm = dcsfeeSOR->GetMCMGlobalState(iROB, iMCM);
1108                 Int_t nim = dcsfeeSOR->GetMCMStateNI(iROB, iMCM);
1109                 Int_t nev = dcsfeeSOR->GetMCMEventCnt(iROB, iMCM);
1110                 Int_t npt = dcsfeeSOR->GetMCMPtCnt(iROB, iMCM);
1111                 Int_t dgsm = -100000;
1112                 Int_t dnim = -100000;
1113                 Int_t dnev = -100000;
1114                 Int_t dnpt = -100000;
1115                 if(sorAndEor) {
1116                   dgsm = gsm - dcsfeeEOR->GetMCMGlobalState(iROB, iMCM);
1117                   dnim = nim - dcsfeeEOR->GetMCMStateNI(iROB, iMCM);
1118                   dnev = nev - dcsfeeEOR->GetMCMEventCnt(iROB, iMCM);
1119                   dnpt = npt - dcsfeeEOR->GetMCMPtCnt(iROB, iMCM);
1120                   if(gsm==-1 && dgsm==0) dgsm = -100000;
1121                   if(nim==-1 && dnim==0) dnim = -100000;
1122                   if(nev==-1 && dnev==0) dnev = -100000;
1123                   if(npt==-1 && dnpt==0) dnpt = -100000;
1124                 }
1125                 robVector[index1] = iROB;
1126                 mcmVector[index1] = iMCM;
1127                 sorandeorVector[index1] = sorAndEor;
1128                 gsmSorVector[index1] = gsm;
1129                 gsmDeltaVector[index1] = dgsm;
1130                 nimSorVector[index1] = nim;
1131                 nimDeltaVector[index1] = dnim;
1132                 nevSorVector[index1] = nev;
1133                 nevDeltaVector[index1] = dnev;
1134                 nptSorVector[index1] = npt;
1135                 nptDeltaVector[index1] = dnpt;
1136                 index1++;
1137               }  // end loop over MCMs
1138             }  // end loop over ROBs
1139           }  // end if(getDCS ...)
1140
1141           Double_t alignChamberPars[6];
1142           for(Int_t ipar=0; ipar<6; ipar++) alignChamberPars[ipar]=0;
1143           if(getAlign && alignMan)
1144             alignMan->GetCh(chamberNo, alignChamberPars);
1145
1146           (*treeStreamer)<< "TRDcalibDetails"
1147                          << "run=" << currRun
1148                          << "SuperModule=" << iSector
1149                          << "Stack=" << iStack
1150                          << "Layer=" << iLayer
1151                          << "Chamber=" << chamberNo;
1152           if(getAlign)
1153             (*treeStreamer)<< "TRDcalibDetails"
1154                            << "Align_SM_ShiftRphi=" << alignSMPars[0]
1155                            << "Align_SM_ShiftZ=" << alignSMPars[1]
1156                            << "Align_SM_ShiftR=" << alignSMPars[2]
1157                            << "Align_SM_RotRphi=" << alignSMPars[3]
1158                            << "Align_SM_RotZ=" << alignSMPars[4]
1159                            << "Align_SM_RotR=" << alignSMPars[5]
1160                            << "Align_Ch_ShiftRphi=" << alignChamberPars[0]
1161                            << "Align_Ch_ShiftZ=" << alignChamberPars[1]
1162                            << "Align_Ch_ShiftR=" << alignChamberPars[2]
1163                            << "Align_Ch_RotRphi=" << alignChamberPars[3]
1164                            << "Align_Ch_RotZ=" << alignChamberPars[4]
1165                            << "Align_Ch_RotR=" << alignChamberPars[5];
1166           if(getCalibs)
1167             (*treeStreamer)<< "TRDcalibDetails"
1168                            << "Gain_Mean_Run=" << runMeanGain
1169                            << "Gain_RMS_Run=" << runRMSGain
1170                            << "Gain_Mean_SuperModule=" << smMeanGain[iSector]
1171                            << "Gain_RMS_SuperModule=" << smRMSGain[iSector]
1172                            << "Gain_Mean_Chamber=" << chamberMeanGain[chamberNo]
1173                            << "Gain_RMS_Chamber=" << chamberRMSGain[chamberNo]
1174                            << "Noise_Mean_Run=" << runMeanNoise
1175                            << "Noise_RMS_Run=" << runRMSNoise
1176                            << "Noise_Mean_SuperModule=" << smMeanNoise[iSector]
1177                            << "Noise_RMS_SuperModule=" << smRMSNoise[iSector]
1178                            << "Noise_Mean_Chamber=" << chamberMeanNoise[chamberNo]
1179                            << "Noise_RMS_Chamber=" << chamberRMSNoise[chamberNo]
1180                            << "Vdrift_Mean_Run=" << runMeanVdrift
1181                            << "Vdrift_RMS_Run=" << runRMSVdrift
1182                            << "Vdrift_Mean_SuperModule=" << smMeanVdrift[iSector]
1183                            << "Vdrift_RMS_SuperModule=" << smRMSVdrift[iSector]
1184                            << "Vdrift_Mean_Chamber=" << chamberMeanVdrift[chamberNo]
1185                            << "Vdrift_RMS_Chamber=" << chamberRMSVdrift[chamberNo]
1186                            << "T0_Mean_Run=" << runMeanT0
1187                            << "T0_RMS_Run=" << runRMST0
1188                            << "T0_Mean_SuperModule=" << smMeanT0[iSector]
1189                            << "T0_RMS_SuperModule=" << smRMST0[iSector]
1190                            << "T0_Mean_Chamber=" << chamberMeanT0[chamberNo]
1191                            << "T0_RMS_Chamber=" << chamberRMST0[chamberNo]
1192                            << "Channel.=" << &channelVector
1193                            << "Row.=" << &rowVector
1194                            << "Column.=" << &colVector
1195                            << "PadSuperRow.=" << &padSuperRowVector
1196                            << "PadSuperColumn.=" << &padSuperColumnVector
1197                            << "Status.=" << &statusVector
1198                            << "Gain.=" << &gainVector
1199                            << "Noise.=" << &noiseVector
1200                            << "Vdrift.=" << &vdriftVector
1201                            << "T0.=" << &t0Vector;
1202           if(getDCS)
1203             (*treeStreamer)<< "TRDcalibDetails"
1204                            << "ROB.=" << &robVector
1205                            << "MCM.=" << &mcmVector
1206                            << "MCMSuperRow.=" << &mcmSuperRowVector
1207                            << "MCMSuperColumn.=" << &mcmSuperColumnVector
1208                            << "SORandEOR.=" << &sorandeorVector
1209                            << "gsmSOR.=" << &gsmSorVector
1210                            << "gsmDelta.=" << &gsmDeltaVector
1211                            << "nimSOR.=" << &nimSorVector
1212                            << "nimDelta.=" << &nimDeltaVector
1213                            << "nevSOR.=" << &nevSorVector
1214                            << "nevDelta.=" << &nevDeltaVector
1215                            << "nptSOR.=" << &nptSorVector
1216                            << "nptDelta.=" << &nptDeltaVector;
1217           (*treeStreamer)<< "TRDcalibDetails"
1218                          << "\n";
1219         }  // end loop over stacks
1220       }  // end loop over supermodules
1221     }  // end loop over layers
1222
1223     // add the run number to the list of runs
1224     runs.ResizeTo(runs.GetNoElements()+1);
1225     runs[runs.GetNoElements()-1] = currRun;
1226
1227     // do cleaning
1228     if(chamberGainFactor) delete chamberGainFactor;
1229     if(padGainFactor) delete padGainFactor;
1230     if(chamberNoise) delete chamberNoise;
1231     if(padNoise) delete padNoise;
1232     if(chamberVdrift) delete chamberVdrift;
1233     if(padVdrift) delete padVdrift;
1234     if(chamberT0) delete chamberT0;
1235     if(padT0) delete padT0;
1236     if(chamberStatus) delete chamberStatus;
1237     if(padStatus) delete padStatus;
1238
1239     // check if we still have run numbers in the file or provided range
1240     if(runListFilename[0]=='\0' && firstRun!=-1 && lastRun!=-1) {
1241       currRun++;
1242       if(currRun>lastRun) break;
1243     }
1244     if(runListFilename[0]!='\0' && in.eof())
1245       break;
1246   }   // end loop over runs
1247
1248   treeStreamer->GetFile()->cd();
1249   runs.Write("runs");
1250   delete treeStreamer;
1251   return kTRUE;
1252   //  delete treeStreamerDCS;
1253 }
1254
1255 //_________________________________________________________________________
1256 void AliTRDCalibViewer::DumpCalibToTree(const Char_t* inFilename, const Char_t* outFilename)
1257 {
1258   //
1259   //  extract info from CalPad objects and dump them into a tree to be viewed
1260   //
1261   TTreeSRedirector *treeStreamer = new TTreeSRedirector(outFilename);
1262   //open file and retrieve list of calPad objects
1263   TFile f(inFilename);
1264   TList *l=(TList*)f.GetListOfKeys();
1265
1266   TObjArray arrCalPads;
1267   TObjArray arrSMmean;
1268   TObjArray arrSMrms;
1269   arrCalPads.SetOwner();
1270   arrSMmean.SetOwner();
1271   arrSMrms.SetOwner();
1272
1273   TIter next(l);
1274   TKey *k=0x0;
1275   while ( (k=(TKey*)next()) ){
1276     AliTRDCalPad *pad=dynamic_cast<AliTRDCalPad*>(k->ReadObj());
1277     if (!pad) continue;
1278     arrCalPads.Add(pad);
1279
1280     TVectorD *smMean=new TVectorD(AliTRDcalibDB::kNsector);
1281     TVectorD *smRMS=new TVectorD(AliTRDcalibDB::kNsector);
1282
1283     arrSMmean.Add(smMean);
1284     arrSMrms.Add(smRMS);
1285
1286     ProcessTRDCalibArray(pad, *smMean, *smRMS);
1287   }
1288
1289   Int_t kSuperModuleStatus[18] = {1, 1, 0, 0, 0, 0,     // super module status (1- installed, 0- not installed)
1290       0, 1, 1, 1, 1, 0,
1291       0, 0, 0, 0, 0, 1};
1292
1293   AliTRDgeometry trdGeom;
1294   Int_t kNRows[5] = {16, 16, 12, 16, 16};  // number of pad rows in the chambers from each of the 5 stacks
1295
1296   for(Short_t iLayer=0; iLayer<AliTRDgeometry::kNlayer; iLayer++) {   // loop over layers
1297     for(Short_t iSM=0; iSM<AliTRDgeometry::kNsector; iSM++) {  // loop over supermodules
1298       if(kSuperModuleStatus[iSM]==0)
1299         continue;
1300
1301       for(Short_t iStack=0; iStack<AliTRDgeometry::kNstack; iStack++) {    // loop over stacks
1302         AliTRDpadPlane &plane=*trdGeom.GetPadPlane(iLayer, iStack);
1303
1304         Short_t chamberNo = AliTRDgeometry::GetDetector(iLayer, iStack, iSM);
1305         const Int_t nrows=plane.GetNrows();
1306         const Int_t ncols=plane.GetNcols();
1307         const Int_t nchannels=nrows*ncols;
1308 //         printf("chamberNo: %d (%03d-%03d-%03d)\n", chamberNo,nrows,ncols,nchannels);
1309
1310         TVectorD channelVector(nchannels);
1311         TVectorD rowVector(nchannels);
1312         TVectorD colVector(nchannels);
1313
1314         TVectorD gxVector(nchannels);
1315         TVectorD gyVector(nchannels);
1316         TVectorD gzVector(nchannels);
1317
1318         TVectorD padSuperRowVector(nchannels);
1319         TVectorD padSuperColumnVector(nchannels);
1320
1321         Int_t index = 0;
1322         for(Short_t iRow=0; iRow<nrows; iRow++) {   // loop over pad rows
1323           for(Short_t iCol=0; iCol<ncols; iCol++) {    // loop over pad columns
1324             Short_t padSuperRow = iRow;
1325             for(Int_t i=0; i<iStack; i++) padSuperRow = padSuperRow + kNRows[i];
1326             padSuperRowVector.GetMatrixArray()[index] = padSuperRow;
1327
1328             Short_t padSuperColumn = iCol;
1329             for(Int_t i=0; i<iSM; i++) padSuperColumn = padSuperColumn + ncols;
1330             padSuperColumnVector.GetMatrixArray()[index] = padSuperColumn;
1331
1332             rowVector.GetMatrixArray()[index] = iRow;
1333             colVector.GetMatrixArray()[index] = iCol;
1334
1335             index++;
1336           }  // end loop over pad columns
1337         }  // end loop over pad rows
1338
1339         (*treeStreamer)<< "TRDcalibDetails"
1340           << "SuperModule=" << iSM
1341           << "Stack=" << iStack
1342           << "Layer=" << iLayer
1343           << "Chamber=" << chamberNo
1344             //geographical information
1345           << "Channel.=" << &channelVector
1346           << "Row.=" << &rowVector
1347           << "Column.=" << &colVector
1348           << "PadSuperRow.=" << &padSuperRowVector
1349           << "PadSuperColumn.=" << &padSuperColumnVector;
1350 //          << "gx.=" << &gxVector
1351 //          << "gy.=" << &gyVector
1352 //          << "gz.=" << &gzVector;
1353
1354         //
1355         // pad calibrations
1356         //
1357         TObjArray arrTrash;
1358         arrTrash.SetOwner();
1359         Int_t ncalib=arrCalPads.GetEntriesFast();
1360         for (Int_t iCalib=0; iCalib<ncalib; ++iCalib){
1361           AliTRDCalPad *pad=(AliTRDCalPad*)arrCalPads.UncheckedAt(iCalib);
1362           AliTRDCalROC *calROC=pad->GetCalROC(chamberNo);
1363
1364           TVectorD &smMean=*((TVectorD*)arrSMmean.UncheckedAt(iCalib));
1365           TVectorD &smRMS=*((TVectorD*)arrSMrms.UncheckedAt(iCalib));
1366
1367           TString calibName=pad->GetName();
1368
1369           TVectorD *valueVector=new TVectorD(nchannels);
1370           arrTrash.Add(valueVector);
1371
1372           Double_t rocMean=0;
1373           Double_t rocRMS=0;
1374           Double_t rocMedian=0;
1375
1376           if (calROC){
1377             Int_t index2 = 0;
1378             for(Short_t iRow=0; iRow<nrows; iRow++) {
1379               for(Short_t iCol=0; iCol<ncols; iCol++) {
1380                 valueVector->GetMatrixArray()[index2] = calROC->GetValue(iCol,iRow);
1381                 index2++;
1382               }
1383             }
1384             rocMean   = calROC->GetMean();
1385             rocRMS    = calROC->GetRMS();
1386             rocMedian = calROC->GetMedian();
1387             //check for NaN
1388             if ( !(rocMean<1e30) ) rocMean=0;
1389             if ( !(rocRMS<1e30) ) rocRMS=0;
1390
1391 //             printf("mean:   %f\n",rocMean);
1392 //             printf("rms:    %f\n",rocRMS);
1393 //             printf("median: %f\n",rocMedian);
1394           }
1395
1396           (*treeStreamer)<< "TRDcalibDetails"
1397             // statistical information
1398             << (Char_t*)((calibName+"_Mean_SuperModule=").Data()) << smMean[iSM]
1399             << (Char_t*)((calibName+"_RMS_SuperModule=").Data())  << smRMS[iSM]
1400             << (Char_t*)((calibName+"_Mean_Chamber=").Data())     << rocMean
1401             << (Char_t*)((calibName+"_RMS_Chamber=").Data())      << rocRMS
1402             << (Char_t*)((calibName+"_Median_Chamber=").Data())   << rocMedian
1403             //pad by pad information
1404             << (Char_t*)((calibName+".=").Data()) << valueVector;
1405
1406         }   // end loop over calib objects
1407
1408         (*treeStreamer)<< "TRDcalibDetails"
1409           << "\n";
1410         arrTrash.Delete();
1411       }  // end loop over stacks
1412     }  // end loop over supermodules
1413   }  // end loop over layers
1414   delete treeStreamer;
1415 }
1416
1417 //_____________________________________________________________________________
1418 void AliTRDCalibViewer::ProcessTRDCalibArray(AliTRDCalDet* chamberCalib, AliTRDCalPad *padCalib,
1419                                              TString parName,
1420                                              Double_t &runValue, Double_t &runRMS,
1421                                              TVectorD &chamberValues, TVectorD &chamberValuesRMS,
1422                                              TVectorD &superModuleValues, TVectorD &superModuleValuesRMS) {
1423   // Process the calibrations for a given run.
1424   // Calculates the run and chamber wise averages
1425   //
1426   if(!chamberCalib) return;
1427   if(!padCalib) return;
1428   Int_t kSuperModuleStatus[18] = {1, 1, 0, 0, 0, 0,     // super module status (1- installed, 0- not installed)
1429                                   0, 1, 1, 1, 1, 0,
1430                                   0, 0, 0, 0, 0, 1};
1431
1432   // initialize the histograms used for extracting the mean and RMS
1433   TH1F *runWiseHisto = new TH1F("runHisto", "runHisto", 200, -10.0, 10.0);
1434   TH1F *superModuleWiseHisto = new TH1F("smHisto", "smHisto", 200, -10.0, 10.0);
1435   TH1F *chamberWiseHisto = new TH1F("chamberHisto", "chamberHisto", 200, -10.0, 10.0);
1436
1437   // check if the calibration parameter is multiplicative or additive
1438   Bool_t multiplicative = kTRUE;
1439   if(!parName.CompareTo("T0")) multiplicative = kFALSE;
1440
1441   // first iteration (calculate all averages and RMS without discrimination on the SM average)
1442   runWiseHisto->Reset();
1443   for(Int_t iSM = 0; iSM<AliTRDcalibDB::kNsector; iSM++) {   // loop over supermodules
1444     // reset the super module histogram
1445     superModuleWiseHisto->Reset();
1446     // check if SM is installed
1447     if(!kSuperModuleStatus[iSM]) continue;
1448     for(Int_t iChamber=iSM*AliTRDcalibDB::kNstack*AliTRDcalibDB::kNlayer;
1449         iChamber < (iSM+1)*AliTRDcalibDB::kNstack*AliTRDcalibDB::kNlayer;
1450         iChamber++) {  // loop over chambers in this supermodule
1451       // get the chamber value
1452       Float_t chamberValue = chamberCalib->GetValue(iChamber);
1453       // get the ROC object
1454       AliTRDCalROC *chamberROC = padCalib->GetCalROC(iChamber);
1455       if(!chamberROC)
1456         continue;
1457       chamberWiseHisto->Reset();
1458       for(Int_t iChannel = 0; iChannel < chamberROC->GetNchannels(); iChannel++){ // loop over channels
1459         // calculate the calibration parameter for this pad
1460         Float_t padValue;
1461         if(multiplicative)
1462           padValue = chamberValue * chamberROC->GetValue(iChannel);
1463         else
1464           padValue = chamberValue + chamberROC->GetValue(iChannel);
1465         // fill the run, SM and chamber wise histograms
1466         chamberWiseHisto->Fill(padValue);
1467         // if the parameter is Noise then check if the pad value is not a default one
1468         // Default value is now 1.2!!!! Check with Raphaelle for more informations
1469         if(parName.Contains("Noise") &&
1470            TMath::Abs(padValue-1.2)<0.00001) continue;
1471         superModuleWiseHisto->Fill(padValue);
1472         runWiseHisto->Fill(padValue);
1473       }  // end loop over channels
1474       // get the chamber wise mean and RMS
1475       chamberValues[iChamber] = chamberWiseHisto->GetMean();
1476       chamberValuesRMS[iChamber] = chamberWiseHisto->GetRMS();
1477     }  // end loop over chambers
1478     // SM wise mean and RMS
1479     superModuleValues[iSM] = superModuleWiseHisto->GetMean();
1480     superModuleValuesRMS[iSM] = superModuleWiseHisto->GetRMS();
1481   }  // end loop over supermodules
1482   // run wise mean and RMS
1483   runValue = runWiseHisto->GetMean();
1484   runRMS = runWiseHisto->GetRMS();
1485
1486   // Noise and Gain are finished processing
1487   if(parName.Contains("Noise") || parName.Contains("Gain"))
1488     return;
1489   // second iteration (calculate SM and run wise averages and RMS for Vdrift and T0)
1490   // The pads with calib parameter equal to the SM average are discarded (default value)
1491   runWiseHisto->Reset();
1492   for(Int_t iSM = 0; iSM<AliTRDcalibDB::kNsector; iSM++) {   // loop over supermodules
1493     superModuleWiseHisto->Reset();
1494     // eliminate the uninstalled super modules
1495     if(!kSuperModuleStatus[iSM]) continue;
1496     for(Int_t iChamber=iSM*AliTRDcalibDB::kNstack*AliTRDcalibDB::kNlayer;
1497         iChamber < (iSM+1)*AliTRDcalibDB::kNstack*AliTRDcalibDB::kNlayer;
1498         iChamber++) {  // loop over chambers
1499       // the chamber value
1500       Float_t chamberValue = chamberCalib->GetValue(iChamber);
1501       AliTRDCalROC *chamberROC = padCalib->GetCalROC(iChamber);
1502       if(!chamberROC)
1503         continue;
1504
1505       for(Int_t iChannel = 0; iChannel < chamberROC->GetNchannels(); iChannel++){ // loop over channels in a chamber
1506         // get the pad value
1507         Float_t padValue;
1508         if(multiplicative)
1509           padValue = chamberValue * chamberROC->GetValue(iChannel);
1510         else
1511           padValue = chamberValue + chamberROC->GetValue(iChannel);
1512         // eliminate from the average and RMS calculation all pads which
1513         // have the calib parameter equal with the SM average
1514         if((parName.Contains("Vdrift") || parName.Contains("T0")) &&
1515            TMath::Abs(padValue-superModuleValues[iSM])<0.00001) continue;
1516         superModuleWiseHisto->Fill(padValue);
1517         runWiseHisto->Fill(padValue);
1518       }   // end loop over channels
1519     }   // end loop over chambers
1520
1521     superModuleValues[iSM] = superModuleWiseHisto->GetMean();
1522     superModuleValuesRMS[iSM] = superModuleWiseHisto->GetRMS();
1523   }   // end loop over super modules
1524   runValue = runWiseHisto->GetMean();
1525   runRMS = runWiseHisto->GetRMS();
1526
1527   delete chamberWiseHisto;
1528   delete superModuleWiseHisto;
1529   delete runWiseHisto;
1530
1531   return;
1532 }
1533
1534
1535 //_____________________________________________________________________________
1536 void AliTRDCalibViewer::ProcessTRDCalibArray(AliTRDCalPad *padCalib,
1537                                              TVectorD &superModuleValues, TVectorD &superModuleValuesRMS)
1538 {
1539 // Process the calibrations for a given run.
1540 // Calculates the run and chamber wise averages
1541
1542   if(!padCalib) return;
1543   Int_t kSuperModuleStatus[18] = {1, 1, 0, 0, 0, 0,     // super module status (1- installed, 0- not installed)
1544       0, 1, 1, 1, 1, 0,
1545       0, 0, 0, 0, 0, 1};
1546
1547   for(Int_t iSM = 0; iSM<AliTRDcalibDB::kNsector; iSM++) {   // loop over supermodules
1548     Double_t mean=0;
1549     Double_t rms=0;
1550     Double_t count=0;
1551     if(!kSuperModuleStatus[iSM]) continue;
1552
1553     // loop over chambers in this supermodule
1554     const Int_t nchambers=AliTRDcalibDB::kNstack*AliTRDcalibDB::kNlayer;
1555     for(Int_t iChamber=iSM*nchambers; iChamber < (iSM+1)*nchambers; iChamber++) {
1556       AliTRDCalROC *chamberROC = padCalib->GetCalROC(iChamber);
1557       if(!chamberROC)
1558         continue;
1559
1560       // loop over channels
1561       for(Int_t iChannel = 0; iChannel < chamberROC->GetNchannels(); iChannel++){
1562         mean+=chamberROC->GetValue(iChannel);
1563         rms+=chamberROC->GetValue(iChannel)*chamberROC->GetValue(iChannel);
1564         ++count;
1565       }  // end loop over channels
1566     }  // end loop over chambers
1567
1568     //calculate mean and rms
1569     if (count>0){
1570       mean/=count;
1571       rms/=count;
1572       rms=TMath::Sqrt(TMath::Abs(mean*mean-rms));
1573     }
1574     // SM wise mean and RMS
1575     superModuleValues[iSM]    = mean;
1576     superModuleValuesRMS[iSM] = rms;
1577   }  // end loop over supermodules
1578 }