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[u/mrichter/AliRoot.git] / ANALYSIS / AliAnalysisTaskESDfilter.cxx
index e31b7dd7b0a8c6a030d8d3ba42fc63ca36fd48e9..6bb3c9cfca59bce92bc4550a94925f8a6ead6497 100644 (file)
-/**************************************************************************
- * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
- *                                                                        *
- * Author: The ALICE Off-line Project.                                    *
- * Contributors are mentioned in the code where appropriate.              *
- *                                                                        *
- * Permission to use, copy, modify and distribute this software and its   *
- * documentation strictly for non-commercial purposes is hereby granted   *
- * without fee, provided that the above copyright notice appears in all   *
- * copies and that both the copyright notice and this permission notice   *
- * appear in the supporting documentation. The authors make no claims     *
- * about the suitability of this software for any purpose. It is          *
- * provided "as is" without express or implied warranty.                  *
- **************************************************************************/
-
-/* $Id: AliAnalysisTaskESDfilter.cxx 24535 2008-03-16 22:43:30Z fca $ */
-#include <TChain.h>
-#include <TTree.h>
-#include <TList.h>
-#include <TArrayI.h>
-#include <TRandom.h>
-#include <TParticle.h>
-
-#include "AliAnalysisTaskESDfilter.h"
-#include "AliAnalysisManager.h"
-#include "AliESDEvent.h"
-#include "AliStack.h"
-#include "AliAODEvent.h"
-#include "AliMCEvent.h"
-#include "AliMCEventHandler.h"
-#include "AliESDInputHandler.h"
-#include "AliAODHandler.h"
-#include "AliAODMCParticle.h"
-#include "AliAnalysisFilter.h"
-#include "AliESDMuonTrack.h"
-#include "AliESDVertex.h"
-#include "AliESDv0.h"
-#include "AliESDkink.h"
-#include "AliESDcascade.h"
-#include "AliESDPmdTrack.h"
-#include "AliESDCaloCluster.h"
-#include "AliESDCaloCells.h"
-#include "AliMultiplicity.h"
-#include "AliLog.h"
-
-ClassImp(AliAnalysisTaskESDfilter)
-
-////////////////////////////////////////////////////////////////////////
-
-AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter():
-    AliAnalysisTaskSE(),
-    fTrackFilter(0x0),
-    fKinkFilter(0x0),
-    fV0Filter(0x0),
-    fHighPthreshold(0),
-    fPtshape(0x0)
-{
-  // Default constructor
-}
-
-AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter(const char* name):
-    AliAnalysisTaskSE(name),
-    fTrackFilter(0x0),
-    fKinkFilter(0x0),
-    fV0Filter(0x0),
-    fHighPthreshold(0),
-    fPtshape(0x0)
-{
-  // Constructor
-}
-
-void AliAnalysisTaskESDfilter::UserCreateOutputObjects()
-{
-// Create the output container
-    OutputTree()->GetUserInfo()->Add(fTrackFilter);
-}
-
-void AliAnalysisTaskESDfilter::Init()
-{
-    // Initialization
-    if (fDebug > 1) AliInfo("Init() \n");
-    // Call configuration file
-}
-
-
-void AliAnalysisTaskESDfilter::UserExec(Option_t */*option*/)
-{
-// Execute analysis for current event
-//
-                                           
-  Long64_t ientry = Entry();
-  if (fDebug > 0) printf("Filter: Analysing event # %5d\n", (Int_t) ientry);
-  if (fHighPthreshold == 0) AliInfo("detector PID signals are stored in each track");
-  if (!fPtshape) AliInfo("detector PID signals are not stored below the pt threshold");
-
-  ConvertESDtoAOD();
-}
-
-void AliAnalysisTaskESDfilter::ConvertESDtoAOD() {
-    // ESD Filter analysis task executed for each event
-
-    AliESDEvent* esd = dynamic_cast<AliESDEvent*>(InputEvent());
-    AliESD* old = esd->GetAliESDOld();
-
-    // Fetch Stack for debuggging if available 
-    AliStack *pStack = 0;
-    AliMCEventHandler *mcH = 0;
-    if(MCEvent()){
-      pStack = MCEvent()->Stack();
-      mcH = (AliMCEventHandler*) ((AliAnalysisManager::GetAnalysisManager())->GetMCtruthEventHandler()); 
-    }
-    // set arrays and pointers
-    Float_t posF[3];
-    Double_t pos[3];
-    Double_t p[3];
-    Double_t p_pos[3];
-    Double_t p_neg[3];
-    Double_t p_pos_atv0[3];
-    Double_t p_neg_atv0[3];
-    Double_t covVtx[6];
-    Double_t covTr[21];
-    Double_t pid[10];
-
-    for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;
-    for (Int_t i = 0; i < 21; i++) covTr [i] = 0.;
-
-    
-    // loop over events and fill them
-    
-    // Multiplicity information needed by the header (to be revised!)
-    Int_t nTracks    = esd->GetNumberOfTracks();
-    //    if (fDebug > 0) printf("-------------------Bo: Number of ESD tracks %d \n",nTracks);
-
-    Int_t nPosTracks = 0;
-//    for (Int_t iTrack = 0; iTrack < nTracks; ++iTrack) 
-//     if (esd->GetTrack(iTrack)->GetSign()> 0) nPosTracks++;
-    
-    // Update the header
-
-    AliAODHeader* header = AODEvent()->GetHeader();
-    header->SetRunNumber(esd->GetRunNumber());
-    if (old) {
-       header->SetBunchCrossNumber(0);
-       header->SetOrbitNumber(0);
-       header->SetPeriodNumber(0);
-       header->SetEventType(0);
-       header->SetMuonMagFieldScale(-999.); // FIXME
-       header->SetCentrality(-999.);        // FIXME
-    } else {
-       header->SetBunchCrossNumber(esd->GetBunchCrossNumber());
-       header->SetOrbitNumber(esd->GetOrbitNumber());
-       header->SetPeriodNumber(esd->GetPeriodNumber());
-       header->SetEventType(esd->GetEventType());
-       header->SetMuonMagFieldScale(-999.); // FIXME
-       header->SetCentrality(-999.);        // FIXME
-    }
-    
-    header->SetTriggerMask(esd->GetTriggerMask()); 
-    header->SetTriggerCluster(esd->GetTriggerCluster());
-    header->SetMagneticField(esd->GetMagneticField());
-    header->SetZDCN1Energy(esd->GetZDCN1Energy());
-    header->SetZDCP1Energy(esd->GetZDCP1Energy());
-    header->SetZDCN2Energy(esd->GetZDCN2Energy());
-    header->SetZDCP2Energy(esd->GetZDCP2Energy());
-    header->SetZDCEMEnergy(esd->GetZDCEMEnergy(0),esd->GetZDCEMEnergy(1));
-    Float_t diamxy[2]={esd->GetDiamondX(),esd->GetDiamondY()};
-    Float_t diamcov[3]; esd->GetDiamondCovXY(diamcov);
-    header->SetDiamond(diamxy,diamcov);
-//
-//    
-    Int_t nV0s      = esd->GetNumberOfV0s();
-    Int_t nCascades = esd->GetNumberOfCascades();
-    Int_t nKinks    = esd->GetNumberOfKinks();
-    Int_t nVertices = nV0s + 2*nCascades /*could lead to two vertices, one V0 and the Xi */+ nKinks + 1 /* = prim. vtx*/;    
-    Int_t nJets     = 0;
-    Int_t nCaloClus = esd->GetNumberOfCaloClusters();
-    Int_t nFmdClus  = 0;
-    Int_t nPmdClus  = esd->GetNumberOfPmdTracks();
-    
-    if (fDebug > 0) 
-       printf("   NV0=%d  NCASCADES=%d  NKINKS=%d\n", nV0s, nCascades, nKinks);
-
-    AODEvent()->ResetStd(nTracks, nVertices, nV0s+nCascades, nJets, nCaloClus, nFmdClus, nPmdClus);
-
-    AliAODTrack *aodTrack = 0x0;
-    AliAODPid   *detpid   = 0x0;
-    Double_t timezero = 0; //TO BE FIXED
-    AliAODv0    *aodV0    = 0x0;
-
-    // RefArray to store the mapping between esd track number and newly created AOD-Track
-    TRefArray   *aodRefs = NULL;
-    if (nTracks > 0) aodRefs = new TRefArray(nTracks);
-
-    // Array to take into account the tracks already added to the AOD
-    Bool_t * usedTrack = NULL;
-    if (nTracks>0) {
-       usedTrack = new Bool_t[nTracks];
-       for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) usedTrack[iTrack]=kFALSE;
-    }
-    // Array to take into account the V0s already added to the AOD
-    Bool_t * usedV0 = NULL;
-    if (nV0s>0) {
-       usedV0 = new Bool_t[nV0s];
-       for (Int_t iV0=0; iV0<nV0s; ++iV0) usedV0[iV0]=kFALSE;
-    }
-    // Array to take into account the kinks already added to the AOD
-    Bool_t * usedKink = NULL;
-    if (nKinks>0) {
-       usedKink = new Bool_t[nKinks];
-       for (Int_t iKink=0; iKink<nKinks; ++iKink) usedKink[iKink]=kFALSE;
-    }
-    
-    // Access to the AOD container of vertices
-    TClonesArray &vertices = *(AODEvent()->GetVertices());
-    Int_t jVertices=0;
-    
-    // Access to the AOD container of tracks
-    TClonesArray &tracks = *(AODEvent()->GetTracks());
-    Int_t jTracks=0; 
-    
-    // Access to the AOD container of V0s
-    TClonesArray &V0s = *(AODEvent()->GetV0s());
-    Int_t jV0s=0;
-    
-    // Add primary vertex. The primary tracks will be defined
-    // after the loops on the composite objects (V0, cascades, kinks)
-    const AliESDVertex *vtx = esd->GetPrimaryVertex();
-    
-    vtx->GetXYZ(pos); // position
-    vtx->GetCovMatrix(covVtx); //covariance matrix
-    
-    AliAODVertex * primary = new(vertices[jVertices++])
-       AliAODVertex(pos, covVtx, vtx->GetChi2toNDF(), NULL, -1, AliAODVertex::kPrimary);
-    primary->SetName(vtx->GetName());
-    primary->SetTitle(vtx->GetTitle());
-
-    if (fDebug > 0) primary->Print();
-
-    // Create vertices starting from the most complex objects
-    Double_t chi2 = 0.;
-    
-    // Cascades
-    for (Int_t nCascade = 0; nCascade < nCascades; ++nCascade) {
-       AliESDcascade *cascade = esd->GetCascade(nCascade);
-       
-       cascade->GetXYZ(pos[0], pos[1], pos[2]);
-
-       if (!old) {
-           chi2 = cascade->GetChi2Xi(); // = chi2/NDF since NDF = 2*2-3
-           cascade->GetPosCovXi(covVtx);
-       } else {
-           chi2 = -999.;
-           for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;
-       }
-       // Add the cascade vertex
-       AliAODVertex * vcascade = new(vertices[jVertices++]) AliAODVertex(pos,
-                                                                         covVtx,
-                                                                         chi2,
-                                                                         primary,
-                                                                         nCascade,
-                                                                         AliAODVertex::kCascade);
-       
-       primary->AddDaughter(vcascade);
-       
-       // Add the V0 from the cascade. The ESD class have to be optimized...
-       // Now we have to search for the corresponding Vo in the list of V0s
-       // using the indeces of the positive and negative tracks
-       
-       Int_t posFromV0 = cascade->GetPindex();
-       Int_t negFromV0 = cascade->GetNindex();
-       
-      
-       AliESDv0 * v0 = 0x0;
-       Int_t indV0 = -1;
-       
-       for (Int_t iV0=0; iV0<nV0s; ++iV0) {
-           
-           v0 = esd->GetV0(iV0);
-           Int_t posV0 = v0->GetPindex();
-           Int_t negV0 = v0->GetNindex();
-           
-           if (posV0==posFromV0 && negV0==negFromV0) {
-               indV0 = iV0;
-               break;
-           }
-       }
-       
-       AliAODVertex * vV0FromCascade = 0x0;
-       
-       if (indV0>-1 && !usedV0[indV0] ) {
-           
-           // the V0 exists in the array of V0s and is not used
-           
-           usedV0[indV0] = kTRUE;
-           
-           v0->GetXYZ(pos[0], pos[1], pos[2]);
-           if (!old) {
-               chi2 = v0->GetChi2V0();  // = chi2/NDF since NDF = 2*2-3                             
-               v0->GetPosCov(covVtx);
-           } else {
-               chi2 = -999.;
-               for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;
-           }
-
-           vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
-                                                                    covVtx,
-                                                                    chi2,
-                                                                    vcascade,
-                                                                    indV0,
-                                                                    AliAODVertex::kV0);
-       } else {
-           
-           // the V0 doesn't exist in the array of V0s or was used
-//         cerr << "Error: event " << esd->GetEventNumberInFile() << " cascade " << nCascade
-//              << " The V0 " << indV0 
-//              << " doesn't exist in the array of V0s or was used!" << endl;
-           
-           cascade->GetXYZ(pos[0], pos[1], pos[2]);
-           
-           if (!old) {
-               chi2 = v0->GetChi2V0();
-               cascade->GetPosCov(covVtx);
-           } else {
-               chi2 = -999.;
-               for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;
-           }
-
-           vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
-                                                                    covVtx,
-                                                                    chi2, // = chi2/NDF since NDF = 2*2-3 (AM)
-                                                                    vcascade,
-                                                                    indV0,
-                                                                    AliAODVertex::kV0);
-           vcascade->AddDaughter(vV0FromCascade);
-       }
-       
-       // Add the positive tracks from the V0
-       
-       if (posFromV0>-1 && !usedTrack[posFromV0]) {
-           
-           usedTrack[posFromV0] = kTRUE;
-           
-           AliESDtrack *esdTrack = esd->GetTrack(posFromV0);
-           esdTrack->GetPxPyPz(p_pos);
-           esdTrack->GetXYZ(pos);
-           esdTrack->GetCovarianceXYZPxPyPz(covTr);
-           esdTrack->GetESDpid(pid);
-           UInt_t selectInfo = 0;
-           if (fTrackFilter) {
-               selectInfo = fTrackFilter->IsSelected(esdTrack);
-           }
-           
-           if(mcH)mcH->SelectParticle(esdTrack->GetLabel());
-           vV0FromCascade->AddDaughter(aodTrack =
-                                       new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                                                          esdTrack->GetLabel(), 
-                                                                          p_pos, 
-                                                                          kTRUE,
-                                                                          pos,
-                                                                          kFALSE,
-                                                                          covTr, 
-                                                                          (Short_t)esdTrack->GetSign(),
-                                                                          esdTrack->GetITSClusterMap(), 
-                                                                          pid,
-                                                                          vV0FromCascade,
-                                                                          kTRUE,  // check if this is right
-                                                                          vtx->UsesTrack(esdTrack->GetID()),
-                                                                          AliAODTrack::kSecondary,
-                                                                          selectInfo)
-                                       );
-           aodRefs->AddAt(aodTrack, posFromV0);
-           
-       if (esdTrack->GetSign() > 0) nPosTracks++;
-           aodTrack->ConvertAliPIDtoAODPID();
-           aodTrack->SetFlags(esdTrack->GetStatus());
-            SetAODPID(esdTrack,aodTrack,detpid,timezero);
-       }
-       else {
-//         cerr << "Error: event " << esd->GetEventNumberInFile() << " cascade " << nCascade
-//              << " track " << posFromV0 << " has already been used!" << endl;
-       }
-       
-       // Add the negative tracks from the V0
-       
-       if (negFromV0>-1 && !usedTrack[negFromV0]) {
-           
-           usedTrack[negFromV0] = kTRUE;
-           
-           AliESDtrack *esdTrack = esd->GetTrack(negFromV0);
-           esdTrack->GetPxPyPz(p_neg);
-           esdTrack->GetXYZ(pos);
-           esdTrack->GetCovarianceXYZPxPyPz(covTr);
-           esdTrack->GetESDpid(pid);
-           UInt_t selectInfo = 0;
-           if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdTrack);      
-           if(mcH)mcH->SelectParticle(esdTrack->GetLabel());
-           vV0FromCascade->AddDaughter(aodTrack =
-                                       new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                                                          esdTrack->GetLabel(),
-                                                                          p_neg,
-                                                                          kTRUE,
-                                                                          pos,
-                                                                          kFALSE,
-                                                                          covTr, 
-                                                                          (Short_t)esdTrack->GetSign(),
-                                                                          esdTrack->GetITSClusterMap(), 
-                                                                          pid,
-                                                                          vV0FromCascade,
-                                                                          kTRUE,  // check if this is right
-                                                                          vtx->UsesTrack(esdTrack->GetID()),
-                                                                          AliAODTrack::kSecondary,
-                                                                          selectInfo)
-                                       );
-           aodRefs->AddAt(aodTrack, negFromV0);
-
-       if (esdTrack->GetSign() > 0) nPosTracks++;
-           aodTrack->ConvertAliPIDtoAODPID();
-           aodTrack->SetFlags(esdTrack->GetStatus());      
-            SetAODPID(esdTrack,aodTrack,detpid,timezero);
-       }
-       else {
-//         cerr << "Error: event " << esd->GetEventNumberInFile() << " cascade " << nCascade
-//              << " track " << negFromV0 << " has already been used!" << endl;
-       }
-       
-       // add it to the V0 array as well
-       Double_t d0[2] = { -999., -99.};
-       // counting is probably wrong
-       new(V0s[jV0s++]) AliAODv0(vV0FromCascade, -999., -99., p_pos, p_neg, d0); // to be refined
-
-       // Add the bachelor track from the cascade
-       
-       Int_t bachelor = cascade->GetBindex();
-       
-       if(bachelor>-1 && !usedTrack[bachelor]) {
-           
-           usedTrack[bachelor] = kTRUE;
-           
-           AliESDtrack *esdTrack = esd->GetTrack(bachelor);
-           esdTrack->GetPxPyPz(p);
-           esdTrack->GetXYZ(pos);
-           esdTrack->GetCovarianceXYZPxPyPz(covTr);
-           esdTrack->GetESDpid(pid);
-           UInt_t selectInfo = 0;
-           if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdTrack);
-
-           if(mcH)mcH->SelectParticle(esdTrack->GetLabel());
-           vcascade->AddDaughter(aodTrack =
-                                 new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                                                    esdTrack->GetLabel(),
-                                                                    p,
-                                                                    kTRUE,
-                                                                    pos,
-                                                                    kFALSE,
-                                                                    covTr, 
-                                                                    (Short_t)esdTrack->GetSign(),
-                                                                    esdTrack->GetITSClusterMap(), 
-                                                                    pid,
-                                                                    vcascade,
-                                                                    kTRUE,  // check if this is right
-                                                                    vtx->UsesTrack(esdTrack->GetID()),
-                                                                    AliAODTrack::kSecondary,
-                                                                    selectInfo)
-                                 );
-           aodRefs->AddAt(aodTrack, bachelor);
-       if (esdTrack->GetSign() > 0) nPosTracks++;
-           aodTrack->ConvertAliPIDtoAODPID();
-           aodTrack->SetFlags(esdTrack->GetStatus());
-            SetAODPID(esdTrack,aodTrack,detpid,timezero);
-       }
-       else {
-//         cerr << "Error: event " << esd->GetEventNumberInFile() << " cascade " << nCascade
-//              << " track " << bachelor << " has already been used!" << endl;
-       }
-       
-       // Add the primary track of the cascade (if any)
-       
-    } // end of the loop on cascades
-
-    //
-    // V0s
-    //
-    
-    for (Int_t nV0 = 0; nV0 < nV0s; ++nV0) {
-       
-       if (usedV0[nV0]) continue; // skip if already added to the AOD
-       
-       AliESDv0 *v0 = esd->GetV0(nV0);
-       Int_t posFromV0 = v0->GetPindex();
-       Int_t negFromV0 = v0->GetNindex();
-       if (posFromV0 < 0 || negFromV0 < 0) continue;
-
-       // V0 selection 
-       //
-       AliESDVertex *esdVtx = new AliESDVertex(*(esd->GetPrimaryVertex()));
-       
-       AliESDtrack *esdV0Pos = esd->GetTrack(posFromV0);
-       AliESDtrack *esdV0Neg = esd->GetTrack(negFromV0);
-       TList v0objects;
-       v0objects.AddAt(v0,                      0);
-       v0objects.AddAt(esdV0Pos,                1);
-       v0objects.AddAt(esdV0Neg,                2);
-       v0objects.AddAt(esdVtx,                  3);
-       UInt_t selectV0 = 0;
-       if (fV0Filter) {
-         selectV0 = fV0Filter->IsSelected(&v0objects);
-         // this is a little awkward but otherwise the 
-         // list wants to access the pointer again when going out of scope
-         delete v0objects.RemoveAt(3);
-         if (!selectV0) 
-           continue;
-       }
-       else{
-         delete v0objects.RemoveAt(3);
-       }
-    
-       v0->GetXYZ(pos[0], pos[1], pos[2]);
-
-       if (!old) {
-           chi2 = v0->GetChi2V0(); // = chi2/NDF since NDF = 2*2-3
-           v0->GetPosCov(covVtx);
-       } else {
-           chi2 = -999.;
-           for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;
-       }
-
-
-       AliAODVertex * vV0 = 
-         new(vertices[jVertices++]) AliAODVertex(pos,
-                                                 covVtx,
-                                                 chi2,
-                                                 primary,
-                                                 nV0,
-                                                 AliAODVertex::kV0);
-       primary->AddDaughter(vV0);
-       
-
-       Float_t  dcaPosToPrimVertexXYZ[2]   = { 999., 999.}; // ..[0] = in XY plane and ..[1] = in Z
-       Float_t  dcaNegToPrimVertexXYZ[2]   = { 999., 999.}; // ..[0] = in XY plane and ..[1] = in Z
-       Double_t dcaDaughterToPrimVertex[2] = { 999., 999.}; // ..[0] = Pos and ..[1] = Neg
-       
-       Double_t  dcaV0Daughters      = v0->GetDcaV0Daughters();
-       Double_t  dcaV0ToPrimVertex   = v0->GetD(esdVtx->GetX(),esdVtx->GetY(),esdVtx->GetZ());
-       v0->GetPPxPyPz(p_pos_atv0[0],p_pos_atv0[1],p_pos_atv0[2]); 
-       v0->GetNPxPyPz(p_neg_atv0[0],p_neg_atv0[1],p_neg_atv0[2]); 
-
-       // Add the positive tracks from the V0
-       
-
-       esdV0Pos->GetPxPyPz(p_pos);
-       esdV0Pos->GetXYZ(pos);
-       esdV0Pos->GetCovarianceXYZPxPyPz(covTr);
-       esdV0Pos->GetESDpid(pid);
-       esdV0Pos->GetImpactParameters(dcaPosToPrimVertexXYZ[0],dcaPosToPrimVertexXYZ[1]);
-       if (!usedTrack[posFromV0]) {
-           usedTrack[posFromV0] = kTRUE;
-           UInt_t selectInfo = 0;
-           if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Pos);
-           if(mcH)mcH->SelectParticle(esdV0Pos->GetLabel());
-           aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Pos->GetID(),
-                                                         esdV0Pos->GetLabel(), 
-                                                         p_pos, 
-                                                         kTRUE,
-                                                         pos,
-                                                         kFALSE,
-                                                         covTr, 
-                                                         (Short_t)esdV0Pos->GetSign(),
-                                                         esdV0Pos->GetITSClusterMap(), 
-                                                         pid,
-                                                         vV0,
-                                                         kTRUE,  // check if this is right
-                                                         vtx->UsesTrack(esdV0Pos->GetID()),
-                                                         AliAODTrack::kSecondary,
-                                                         selectInfo);
-           aodRefs->AddAt(aodTrack,posFromV0);
-           //      if (fDebug > 0) printf("-------------------Bo: pos track from original pt %.3f \n",aodTrack->Pt());
-           if (esdV0Pos->GetSign() > 0) nPosTracks++;
-           aodTrack->ConvertAliPIDtoAODPID();
-           aodTrack->SetFlags(esdV0Pos->GetStatus());
-            SetAODPID(esdV0Pos,aodTrack,detpid,timezero);
-       }
-       else {
-           aodTrack = dynamic_cast<AliAODTrack*>(aodRefs->At(posFromV0));
-           //      if (fDebug > 0) printf("-------------------Bo pos track from refArray pt %.3f \n",aodTrack->Pt());
-       }
-       vV0->AddDaughter(aodTrack);
-    
-       // Add the negative tracks from the V0
-       
-       esdV0Neg->GetPxPyPz(p_neg);
-       esdV0Neg->GetXYZ(pos);
-       esdV0Neg->GetCovarianceXYZPxPyPz(covTr);
-       esdV0Neg->GetESDpid(pid);
-       esdV0Neg->GetImpactParameters(dcaNegToPrimVertexXYZ[0],dcaNegToPrimVertexXYZ[1]);
-       
-       if (!usedTrack[negFromV0]) {
-           usedTrack[negFromV0] = kTRUE;
-           UInt_t selectInfo = 0;
-           if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Neg);
-           if(mcH)mcH->SelectParticle(esdV0Neg->GetLabel());
-           aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Neg->GetID(),
-                                                         esdV0Neg->GetLabel(),
-                                                         p_neg,
-                                                         kTRUE,
-                                                         pos,
-                                                         kFALSE,
-                                                         covTr, 
-                                                         (Short_t)esdV0Neg->GetSign(),
-                                                         esdV0Neg->GetITSClusterMap(), 
-                                                         pid,
-                                                         vV0,
-                                                         kTRUE,  // check if this is right
-                                                         vtx->UsesTrack(esdV0Neg->GetID()),
-                                                         AliAODTrack::kSecondary,
-                                                         selectInfo);
-           
-           aodRefs->AddAt(aodTrack,negFromV0);
-           //      if (fDebug > 0) printf("-------------------Bo: neg track from original pt %.3f \n",aodTrack->Pt());
-           if (esdV0Neg->GetSign() > 0) nPosTracks++;
-           aodTrack->ConvertAliPIDtoAODPID();
-           aodTrack->SetFlags(esdV0Neg->GetStatus());
-            SetAODPID(esdV0Neg,aodTrack,detpid,timezero);
-       }
-       else {
-           aodTrack = dynamic_cast<AliAODTrack*>(aodRefs->At(negFromV0));
-           //      if (fDebug > 0) printf("-------------------Bo neg track from refArray pt %.3f \n",aodTrack->Pt());
-       }
-       vV0->AddDaughter(aodTrack);
-       dcaDaughterToPrimVertex[0] = 
-           TMath::Sqrt(dcaPosToPrimVertexXYZ[0]*dcaPosToPrimVertexXYZ[0]
-                       +dcaPosToPrimVertexXYZ[1]*dcaPosToPrimVertexXYZ[1]);
-       dcaDaughterToPrimVertex[1] = 
-           TMath::Sqrt(dcaNegToPrimVertexXYZ[0]*dcaNegToPrimVertexXYZ[0]
-                       +dcaNegToPrimVertexXYZ[1]*dcaNegToPrimVertexXYZ[1]);
-       // add it to the V0 array as well
-       aodV0 = new(V0s[jV0s++]) 
-           AliAODv0(vV0, dcaV0Daughters, dcaV0ToPrimVertex, p_pos_atv0, p_neg_atv0, dcaDaughterToPrimVertex); // to be refined
-       // set the aod v0 on-the-fly status
-       aodV0->SetOnFlyStatus(v0->GetOnFlyStatus());
-    } 
-    V0s.Expand(jV0s);   
-    // end of the loop on V0s
-    
-    // Kinks: it is a big mess the access to the information in the kinks
-    // The loop is on the tracks in order to find the mother and daugther of each kink
-    
-    
-    for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) {
-       
-       AliESDtrack * esdTrack = esd->GetTrack(iTrack);
-       
-       Int_t ikink = esdTrack->GetKinkIndex(0);
-       
-       if (ikink && nKinks) {
-           // Negative kink index: mother, positive: daughter
-           
-           // Search for the second track of the kink
-           
-           for (Int_t jTrack = iTrack+1; jTrack<nTracks; ++jTrack) {
-               
-               AliESDtrack * esdTrack1 = esd->GetTrack(jTrack);
-               
-               Int_t jkink = esdTrack1->GetKinkIndex(0);
-               
-               if ( TMath::Abs(ikink)==TMath::Abs(jkink) ) {
-                   
-                   // The two tracks are from the same kink
-                   
-                   if (usedKink[TMath::Abs(ikink)-1]) continue; // skip used kinks
-                   
-                   Int_t imother = -1;
-                   Int_t idaughter = -1;
-                   
-                   if (ikink<0 && jkink>0) {
-                       
-                       imother = iTrack;
-                       idaughter = jTrack;
-                   }
-                   else if (ikink>0 && jkink<0) {
-                       
-                       imother = jTrack;
-                       idaughter = iTrack;
-                   }
-                   else {
-//                     cerr << "Error: Wrong combination of kink indexes: "
-//                          << ikink << " " << jkink << endl;
-                       continue;
-                   }
-                   
-                   // Add the mother track if it passed primary track selection cuts
-                   
-                   AliAODTrack * mother = NULL;
-                   
-                   UInt_t selectInfo = 0;
-                   if (fTrackFilter) {
-                       selectInfo = fTrackFilter->IsSelected(esd->GetTrack(imother));
-                       if (!selectInfo) continue;
-                   }
-                   
-                   if (!usedTrack[imother]) {
-                       
-                       usedTrack[imother] = kTRUE;
-                       
-                       AliESDtrack *esdTrackM = esd->GetTrack(imother);
-                       esdTrackM->GetPxPyPz(p);
-                       esdTrackM->GetXYZ(pos);
-                       esdTrackM->GetCovarianceXYZPxPyPz(covTr);
-                       esdTrackM->GetESDpid(pid);
-                       if(mcH)mcH->SelectParticle(esdTrackM->GetLabel());
-                       mother = 
-                           new(tracks[jTracks++]) AliAODTrack(esdTrackM->GetID(),
-                                                              esdTrackM->GetLabel(),
-                                                              p,
-                                                              kTRUE,
-                                                              pos,
-                                                              kFALSE,
-                                                              covTr, 
-                                                              (Short_t)esdTrackM->GetSign(),
-                                                              esdTrackM->GetITSClusterMap(), 
-                                                              pid,
-                                                              primary,
-                                                              kTRUE, // check if this is right
-                                                              vtx->UsesTrack(esdTrack->GetID()),
-                                                              AliAODTrack::kPrimary,
-                                                              selectInfo);
-                       aodRefs->AddAt(mother, imother);
-                       
-                       if (esdTrackM->GetSign() > 0) nPosTracks++;
-                       mother->SetFlags(esdTrackM->GetStatus());
-                       mother->ConvertAliPIDtoAODPID();
-                       primary->AddDaughter(mother);
-                       mother->ConvertAliPIDtoAODPID();
-                        SetAODPID(esdTrackM,mother,detpid,timezero);
-                   }
-                   else {
-//                     cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1
-//                          << " track " << imother << " has already been used!" << endl;
-                 }
-                   
-                   // Add the kink vertex
-                   AliESDkink * kink = esd->GetKink(TMath::Abs(ikink)-1);
-                   
-                   AliAODVertex * vkink = 
-                       new(vertices[jVertices++]) AliAODVertex(kink->GetPosition(),
-                                                               NULL,
-                                                               0.,
-                                                               mother,
-                                                               esdTrack->GetID(),  // This is the track ID of the mother's track!
-                                                               AliAODVertex::kKink);
-                   // Add the daughter track
-                 
-                   AliAODTrack * daughter = NULL;
-                   
-                   if (!usedTrack[idaughter]) {
-                       
-                       usedTrack[idaughter] = kTRUE;
-                       
-                       AliESDtrack *esdTrackD = esd->GetTrack(idaughter);
-                       esdTrackD->GetPxPyPz(p);
-                       esdTrackD->GetXYZ(pos);
-                       esdTrackD->GetCovarianceXYZPxPyPz(covTr);
-                       esdTrackD->GetESDpid(pid);
-                       selectInfo = 0;
-                       if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdTrackD);
-                       if(mcH)mcH->SelectParticle(esdTrackD->GetLabel());
-                       daughter = 
-                           new(tracks[jTracks++]) AliAODTrack(esdTrackD->GetID(),
-                                                              esdTrackD->GetLabel(),
-                                                              p,
-                                                              kTRUE,
-                                                              pos,
-                                                              kFALSE,
-                                                              covTr, 
-                                                              (Short_t)esdTrackD->GetSign(),
-                                                              esdTrackD->GetITSClusterMap(), 
-                                                              pid,
-                                                              vkink,
-                                                              kTRUE, // check if this is right
-                                                              vtx->UsesTrack(esdTrack->GetID()),
-                                                              AliAODTrack::kSecondary,
-                                                              selectInfo);
-                       
-                       aodRefs->AddAt(daughter, idaughter);
-                       
-                       if (esdTrackD->GetSign() > 0) nPosTracks++;
-                       daughter->SetFlags(esdTrackD->GetStatus());
-                       daughter->ConvertAliPIDtoAODPID();
-                       vkink->AddDaughter(daughter);
-                       daughter->ConvertAliPIDtoAODPID();
-                       SetAODPID(esdTrackD,daughter,detpid,timezero);
-                   }
-                   else {
-//                     cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1
-//                          << " track " << idaughter << " has already been used!" << endl;
-                   }
-               }
-           }
-       }      
-    }
-    
-  
-    // Tracks (primary and orphan)
-
-    if (fDebug > 0) printf("NUMBER OF ESD TRACKS %5d\n", nTracks);
-    
-    for (Int_t nTrack = 0; nTrack < nTracks; ++nTrack) {
-       
-       
-       if (usedTrack[nTrack]) continue;
-
-       AliESDtrack *esdTrack = esd->GetTrack(nTrack);
-       UInt_t selectInfo = 0;
-       //
-       // Track selection
-       if (fTrackFilter) {
-           selectInfo = fTrackFilter->IsSelected(esdTrack);
-           if (!selectInfo && !vtx->UsesTrack(esdTrack->GetID())) continue;
-       }
-       
-       //
-       esdTrack->GetPxPyPz(p);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-       if(mcH)mcH->SelectParticle(esdTrack->GetLabel());
-       primary->AddDaughter(aodTrack =
-                            new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                                               esdTrack->GetLabel(),
-                                                               p,
-                                                               kTRUE,
-                                                               pos,
-                                                               kFALSE,
-                                                               covTr, 
-                                                               (Short_t)esdTrack->GetSign(),
-                                                               esdTrack->GetITSClusterMap(), 
-                                                               pid,
-                                                               primary,
-                                                               kTRUE, // check if this is right
-                                                               vtx->UsesTrack(esdTrack->GetID()),
-                                                               AliAODTrack::kPrimary, 
-                                                               selectInfo)
-                            );
-       aodRefs->AddAt(aodTrack, nTrack);
-       
-       if (esdTrack->GetSign() > 0) nPosTracks++;
-       aodTrack->SetFlags(esdTrack->GetStatus());
-       aodTrack->ConvertAliPIDtoAODPID();
-       SetAODPID(esdTrack,aodTrack,detpid,timezero);
-    } // end of loop on tracks
-    
-    // Update number of AOD tracks in header at the end of track loop (M.G.)
-    header->SetRefMultiplicity(jTracks);
-    header->SetRefMultiplicityPos(nPosTracks);
-    header->SetRefMultiplicityNeg(jTracks - nPosTracks);
-    if (fDebug > 0) 
-      printf("   NAODTRACKS=%d  NPOS=%d  NNEG=%d\n", jTracks, nPosTracks, jTracks - nPosTracks);
-    // Do not shrink the array of tracks - other filters may add to it (M.G)
-//    tracks.Expand(jTracks); // remove 'empty slots' due to unwritten tracks
-  
-    // Access to the AOD container of PMD clusters
-    TClonesArray &pmdClusters = *(AODEvent()->GetPmdClusters());
-    Int_t jPmdClusters=0;
-  
-    for (Int_t iPmd = 0; iPmd < nPmdClus; ++iPmd) {
-      // file pmd clusters, to be revised!
-      AliESDPmdTrack *pmdTrack = esd->GetPmdTrack(iPmd);
-      Int_t nLabel = 0;
-      Int_t *label = 0x0;
-      Double_t posPmd[3] = { pmdTrack->GetClusterX(), pmdTrack->GetClusterY(), pmdTrack->GetClusterZ()};
-      Double_t pidPmd[9] = { 0., 0., 0., 0., 0., 0., 0., 0., 0. }; // to be revised!
-      // type not set!
-      // assoc cluster not set
-      new(pmdClusters[jPmdClusters++]) AliAODPmdCluster(iPmd, nLabel, label, pmdTrack->GetClusterADC(), posPmd, pidPmd);
-    }
-
-    // Access to the AOD container of clusters
-    TClonesArray &caloClusters = *(AODEvent()->GetCaloClusters());
-    Int_t jClusters=0;
-    for (Int_t iClust=0; iClust<nCaloClus; ++iClust) {
-
-      AliESDCaloCluster * cluster = esd->GetCaloCluster(iClust);
-
-      Int_t id        = cluster->GetID();
-      Int_t nLabel    = cluster->GetNLabels();
-      TArrayI* labels = cluster->GetLabels();
-      Int_t *label = 0;
-      if (labels){
-       label = (cluster->GetLabels())->GetArray();
-       for(int i = 0;i < labels->GetSize();++i){
-         if(mcH)mcH->SelectParticle(label[i]);
-       }
-      }     
-
-      Float_t energy = cluster->E();
-      cluster->GetPosition(posF);
-      Char_t ttype = AliAODCluster::kUndef; 
-
-      if (cluster->GetClusterType() == AliESDCaloCluster::kPHOSCluster) {
-       ttype=AliAODCluster::kPHOSNeutral;
-      } 
-      else if (cluster->GetClusterType() == AliESDCaloCluster::kEMCALClusterv1) {
-       ttype = AliAODCluster::kEMCALClusterv1;
-      }
-
-      
-      AliAODCaloCluster *caloCluster = new(caloClusters[jClusters++]) AliAODCaloCluster(id,
-                                                                                       nLabel,
-                                                                                       label,
-                                                                                       energy,
-                                                                                       posF,
-                                                                                       NULL,
-                                                                                       ttype);
-      
-      caloCluster->SetCaloCluster(cluster->GetDistanceToBadChannel(),
-                                 cluster->GetClusterDisp(),
-                                 cluster->GetM20(), cluster->GetM02(),
-                                 cluster->GetEmcCpvDistance(),  
-                                 cluster->GetNExMax(),cluster->GetTOF()) ;
-
-      caloCluster->SetPIDFromESD(cluster->GetPid());
-      caloCluster->SetNCells(cluster->GetNCells());
-      caloCluster->SetCellsAbsId(cluster->GetCellsAbsId());
-      caloCluster->SetCellsAmplitudeFraction(cluster->GetCellsAmplitudeFraction());
-
-      TArrayI* matchedT =      cluster->GetTracksMatched();
-      if (matchedT && cluster->GetTrackMatched() >= 0) {       
-       for (Int_t im = 0; im < matchedT->GetSize(); im++) {
-           Int_t iESDtrack = matchedT->At(im);;
-           if (aodRefs->At(iESDtrack) != 0) {
-               caloCluster->AddTrackMatched((AliAODTrack*)aodRefs->At(iESDtrack));
-           }
-       }
-      }
-      
-    } 
-    caloClusters.Expand(jClusters); // resize TObjArray to 'remove' slots for pseudo clusters   
-    // end of loop on calo clusters
-
-    // fill EMCAL cell info
-    if (esd->GetEMCALCells()) { // protection against missing ESD information
-      AliESDCaloCells &esdEMcells = *(esd->GetEMCALCells());
-      Int_t nEMcell = esdEMcells.GetNumberOfCells() ;
-      
-      AliAODCaloCells &aodEMcells = *(AODEvent()->GetEMCALCells());
-      aodEMcells.CreateContainer(nEMcell);
-      aodEMcells.SetType(AliAODCaloCells::kEMCAL);
-      for (Int_t iCell = 0; iCell < nEMcell; iCell++) {      
-       aodEMcells.SetCell(iCell,esdEMcells.GetCellNumber(iCell),esdEMcells.GetAmplitude(iCell));
-      }
-      aodEMcells.Sort();
-    }
-
-    // fill PHOS cell info
-    if (esd->GetPHOSCells()) { // protection against missing ESD information
-      AliESDCaloCells &esdPHcells = *(esd->GetPHOSCells());
-      Int_t nPHcell = esdPHcells.GetNumberOfCells() ;
-      
-      AliAODCaloCells &aodPHcells = *(AODEvent()->GetPHOSCells());
-      aodPHcells.CreateContainer(nPHcell);
-      aodPHcells.SetType(AliAODCaloCells::kPHOS);
-      for (Int_t iCell = 0; iCell < nPHcell; iCell++) {      
-       aodPHcells.SetCell(iCell,esdPHcells.GetCellNumber(iCell),esdPHcells.GetAmplitude(iCell));
-      }
-      aodPHcells.Sort();
-    }
-
-    // tracklets    
-    AliAODTracklets &SPDTracklets = *(AODEvent()->GetTracklets());
-    const AliMultiplicity *mult = esd->GetMultiplicity();
-    if (mult) {
-      if (mult->GetNumberOfTracklets()>0) {
-       SPDTracklets.CreateContainer(mult->GetNumberOfTracklets());
-
-       for (Int_t n=0; n<mult->GetNumberOfTracklets(); n++) {
-         if(mcH){
-           mcH->SelectParticle(mult->GetLabel(n, 0));
-           mcH->SelectParticle(mult->GetLabel(n, 1));
-         }
-         SPDTracklets.SetTracklet(n, mult->GetTheta(n), mult->GetPhi(n), mult->GetDeltaPhi(n), mult->GetLabel(n, 0),mult->GetLabel(n, 1));
-       }
-      }
-    } else {
-      //Printf("ERROR: AliMultiplicity could not be retrieved from ESD");
-    }
-
-    delete [] usedTrack;
-    delete [] usedV0;
-    delete [] usedKink;
-    delete    aodRefs;
-
-    return;
-}
-
-
-void AliAnalysisTaskESDfilter::SetAODPID(AliESDtrack *esdtrack, AliAODTrack *aodtrack, AliAODPid *detpid, Double_t timezero)
-{
-  //
-  // Setter for the raw PID detector signals
-  //
-
-  if(esdtrack->Pt()>fHighPthreshold) {
-    detpid = new AliAODPid();
-    SetDetectorRawSignals(detpid,esdtrack,timezero);
-    aodtrack->SetDetPID(detpid);
-  } else {
-    if(fPtshape){
-      if(esdtrack->Pt()> fPtshape->GetXmin()){
-       Double_t y = fPtshape->Eval(esdtrack->Pt())/fPtshape->Eval(fHighPthreshold);
-       if(gRandom->Rndm(0)<1./y){
-         detpid = new AliAODPid();
-         SetDetectorRawSignals(detpid,esdtrack,timezero);
-         aodtrack->SetDetPID(detpid);
-       }//end rndm
-      }//end if p < pmin
-    }//end if p function
-  }// end else
-}
-
-void AliAnalysisTaskESDfilter::SetDetectorRawSignals(AliAODPid *aodpid, AliESDtrack *track, Double_t timezero)
-{
-//
-//assignment of the detector signals (AliXXXesdPID inspired)
-//
- if(!track){
- AliInfo("no ESD track found. .....exiting");
- return;
- }
-
- aodpid->SetITSsignal(track->GetITSsignal());
- aodpid->SetTPCsignal(track->GetTPCsignal());
- //n TRD planes = 6
-
- Int_t nslices = track->GetNumberOfTRDslices()*6;
- Double_t *trdslices = new Double_t[nslices];
- for(Int_t iSl =0; iSl < track->GetNumberOfTRDslices(); iSl++) {
-     for(Int_t iPl =0; iPl<6; iPl++) trdslices[iPl*track->GetNumberOfTRDslices()+iSl] = track->GetTRDslice(iPl,iSl);
-    }
-
-
- aodpid->SetTRDsignal(track->GetNumberOfTRDslices()*6,trdslices);
- Double_t times[AliAODPid::kSPECIES]; track->GetIntegratedTimes(times);
- aodpid->SetIntegratedTimes(times);
-
- aodpid->SetTOFsignal(track->GetTOFsignal()-timezero); // to be fixed
- aodpid->SetHMPIDsignal(track->GetHMPIDsignal());
-
-}
-
-void AliAnalysisTaskESDfilter::Terminate(Option_t */*option*/)
-{
-// Terminate analysis
-//
-    if (fDebug > 1) printf("AnalysisESDfilter: Terminate() \n");
-}
-
-void  AliAnalysisTaskESDfilter::PrintMCInfo(AliStack *pStack,Int_t label){
-  if(!pStack)return;
-  label = TMath::Abs(label);
-  TParticle *part = pStack->Particle(label);
-  Printf("########################");
-  Printf("%s:%d %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,label,part->GetUniqueID(),part->GetPdgCode(),part->P());
-  part->Print();
-  TParticle* mother = part;
-  Int_t imo = part->GetFirstMother();
-  Int_t nprim = pStack->GetNprimary();
-  //  while((imo >= nprim) && (mother->GetUniqueID() == 4)) {
-  while((imo >= nprim)) {
-    mother =  pStack->Particle(imo);
-    Printf("Mother %s:%d Label %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,imo,mother->GetUniqueID(),mother->GetPdgCode(),mother->P());
-    mother->Print();
-    imo =  mother->GetFirstMother();
-  }
-  Printf("########################");
-}
+/**************************************************************************\r
+ * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *\r
+ *                                                                        *\r
+ * Author: The ALICE Off-line Project.                                    *\r
+ * Contributors are mentioned in the code where appropriate.              *\r
+ *                                                                        *\r
+ * Permission to use, copy, modify and distribute this software and its   *\r
+ * documentation strictly for non-commercial purposes is hereby granted   *\r
+ * without fee, provided that the above copyright notice appears in all   *\r
+ * copies and that both the copyright notice and this permission notice   *\r
+ * appear in the supporting documentation. The authors make no claims     *\r
+ * about the suitability of this software for any purpose. It is          *\r
+ * provided "as is" without express or implied warranty.                  *\r
+ **************************************************************************/\r
+\r
+/* $Id: AliAnalysisTaskESDfilter.cxx 24535 2008-03-16 22:43:30Z fca $ */\r
\r
+#include <TChain.h>\r
+#include <TTree.h>\r
+#include <TList.h>\r
+#include <TArrayI.h>\r
+#include <TRandom.h>\r
+#include <TParticle.h>\r
+\r
+#include "AliAnalysisTaskESDfilter.h"\r
+#include "AliAnalysisManager.h"\r
+#include "AliESDEvent.h"\r
+#include "AliESDRun.h"\r
+#include "AliStack.h"\r
+#include "AliAODEvent.h"\r
+#include "AliMCEvent.h"\r
+#include "AliMCEventHandler.h"\r
+#include "AliESDInputHandler.h"\r
+#include "AliAODHandler.h"\r
+#include "AliAODMCParticle.h"\r
+#include "AliAnalysisFilter.h"\r
+#include "AliESDMuonTrack.h"\r
+#include "AliESDVertex.h"\r
+#include "AliESDv0.h"\r
+#include "AliESDkink.h"\r
+#include "AliESDcascade.h"\r
+#include "AliESDPmdTrack.h"\r
+#include "AliESDCaloCluster.h"\r
+#include "AliESDCaloCells.h"\r
+#include "AliMultiplicity.h"\r
+#include "AliLog.h"\r
+\r
+ClassImp(AliAnalysisTaskESDfilter)\r
+\r
+////////////////////////////////////////////////////////////////////////\r
+\r
+AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter():\r
+    AliAnalysisTaskSE(),\r
+    fTrackFilter(0x0),\r
+    fKinkFilter(0x0),\r
+    fV0Filter(0x0),\r
+    fCascadeFilter(0x0),\r
+    fHighPthreshold(0),\r
+    fPtshape(0x0),\r
+    fEnableFillAOD(kTRUE)\r
+{\r
+  // Default constructor\r
+}\r
+\r
+AliAnalysisTaskESDfilter::AliAnalysisTaskESDfilter(const char* name):\r
+    AliAnalysisTaskSE(name),\r
+    fTrackFilter(0x0),\r
+    fKinkFilter(0x0),\r
+    fV0Filter(0x0),\r
+    fCascadeFilter(0x0),\r
+    fHighPthreshold(0),\r
+    fPtshape(0x0),\r
+    fEnableFillAOD(kTRUE)\r
+{\r
+  // Constructor\r
+}\r
+\r
+void AliAnalysisTaskESDfilter::UserCreateOutputObjects()\r
+{\r
+  //\r
+  // Create Output Objects conenct filter to outputtree\r
+  // \r
+  if(OutputTree()){\r
+    OutputTree()->GetUserInfo()->Add(fTrackFilter);\r
+  }\r
+  else{\r
+    AliError("No OutputTree() for adding the track filter");\r
+  }\r
+}\r
+\r
+void AliAnalysisTaskESDfilter::Init()\r
+{\r
+    // Initialization\r
+    if (fDebug > 1) AliInfo("Init() \n");\r
+    // Call configuration file\r
+}\r
+\r
+\r
+void AliAnalysisTaskESDfilter::UserExec(Option_t */*option*/)\r
+{\r
+// Execute analysis for current event\r
+//\r
+                                           \r
+  Long64_t ientry = Entry();\r
+  \r
+  if (fDebug > 0) {\r
+      printf("Filter: Analysing event # %5d\n", (Int_t) ientry);\r
+      if (fHighPthreshold == 0) AliInfo("detector PID signals are stored in each track");\r
+      if (!fPtshape) AliInfo("detector PID signals are not stored below the pt threshold");\r
+  }\r
+  // Filters must explicitely enable AOD filling in their UserExec (AG)\r
+  if (!AliAnalysisManager::GetAnalysisManager()->GetOutputEventHandler()) AliFatal("Cannot run ESD filter without an output event handler");\r
+  if(fEnableFillAOD) AliAnalysisManager::GetAnalysisManager()->GetOutputEventHandler()->SetFillAOD(kTRUE);\r
+\r
+  ConvertESDtoAOD();\r
+}\r
+\r
+void AliAnalysisTaskESDfilter::ConvertESDtoAOD() {\r
+    // ESD Filter analysis task executed for each event\r
+\r
+    AliESDEvent* esd = dynamic_cast<AliESDEvent*>(InputEvent());\r
+    if(!esd)return;\r
+    AliESD*      old = esd->GetAliESDOld();\r
+\r
+    // Fetch Stack for debuggging if available \r
+    AliMCEventHandler *mcH = 0;\r
+    if(MCEvent()){\r
+      mcH = (AliMCEventHandler*) ((AliAnalysisManager::GetAnalysisManager())->GetMCtruthEventHandler()); \r
+    }\r
+    // set arrays and pointers\r
+    Float_t posF[3];\r
+    Double_t pos[3];\r
+    Double_t p[3];\r
+    Double_t momPos[3]; \r
+    Double_t momNeg[3];\r
+    Double_t momBach[3];\r
+    Double_t momPosAtV0vtx[3];\r
+    Double_t momNegAtV0vtx[3];\r
+    Double_t momBachAtCascadeVtx[3];\r
+    Double_t covVtx[6];\r
+    Double_t covTr[21];\r
+    Double_t pid[10];\r
+\r
+    for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;\r
+    for (Int_t i = 0; i < 21; i++) covTr [i] = 0.;\r
+\r
+    \r
+    // loop over events and fill them\r
+    // Multiplicity information needed by the header (to be revised!)\r
+    Int_t nTracks    = esd->GetNumberOfTracks();\r
+    for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) esd->GetTrack(iTrack)->SetESDEvent(esd);\r
+\r
+    //    if (fDebug > 0) printf("-------------------Bo: Number of ESD tracks %d \n",nTracks);\r
+\r
+    Int_t nPosTracks = 0;\r
+    \r
+    // Update the header\r
+\r
+    AliAODHeader* header = AODEvent()->GetHeader();\r
+    \r
+    header->SetRunNumber(esd->GetRunNumber());\r
+    header->SetOfflineTrigger(fInputHandler->IsEventSelected()); // propagate the decision of the physics selection\r
+    if (old) {\r
+       header->SetBunchCrossNumber(0);\r
+       header->SetOrbitNumber(0);\r
+       header->SetPeriodNumber(0);\r
+       header->SetEventType(0);\r
+       header->SetMuonMagFieldScale(-999.);\r
+       header->SetCentrality(-999.);       \r
+    } else {\r
+       header->SetBunchCrossNumber(esd->GetBunchCrossNumber());\r
+       header->SetOrbitNumber(esd->GetOrbitNumber());\r
+       header->SetPeriodNumber(esd->GetPeriodNumber());\r
+       header->SetEventType(esd->GetEventType());\r
+       header->SetCentrality(-999.);        // FIXME\r
+    }\r
+    // Trigger\r
+    header->SetFiredTriggerClasses(esd->GetFiredTriggerClasses());\r
+    header->SetTriggerMask(esd->GetTriggerMask()); \r
+    header->SetTriggerCluster(esd->GetTriggerCluster());\r
+    \r
+\r
+    header->SetMagneticField(esd->GetMagneticField());\r
+    header->SetMuonMagFieldScale(esd->GetCurrentDip()/6000.);\r
+    header->SetZDCN1Energy(esd->GetZDCN1Energy());\r
+    header->SetZDCP1Energy(esd->GetZDCP1Energy());\r
+    header->SetZDCN2Energy(esd->GetZDCN2Energy());\r
+    header->SetZDCP2Energy(esd->GetZDCP2Energy());\r
+    header->SetZDCEMEnergy(esd->GetZDCEMEnergy(0),esd->GetZDCEMEnergy(1));\r
+\r
+    \r
+    Float_t diamxy[2]={esd->GetDiamondX(),esd->GetDiamondY()};\r
+    Float_t diamcov[3]; esd->GetDiamondCovXY(diamcov);\r
+    header->SetDiamond(diamxy,diamcov);\r
+    header->SetDiamondZ(esd->GetDiamondZ(),esd->GetSigma2DiamondZ());\r
+//\r
+//\r
+    Int_t nV0s      = esd->GetNumberOfV0s();\r
+    Int_t nCascades = esd->GetNumberOfCascades();\r
+    Int_t nKinks    = esd->GetNumberOfKinks();\r
+    Int_t nVertices = nV0s + nCascades /*V0 wihtin cascade already counted*/+ nKinks + 1 /* = prim. vtx*/;\r
+    Int_t nPileSPDVertices=1+esd->GetNumberOfPileupVerticesSPD(); // also SPD main vertex\r
+    Int_t nPileTrkVertices=esd->GetNumberOfPileupVerticesTracks();\r
+    nVertices+=nPileSPDVertices;\r
+    nVertices+=nPileTrkVertices;\r
+    Int_t nJets     = 0;\r
+    Int_t nCaloClus = esd->GetNumberOfCaloClusters();\r
+    Int_t nFmdClus  = 0;\r
+    Int_t nPmdClus  = esd->GetNumberOfPmdTracks();\r
+    \r
+    if (fDebug > 0) \r
+       printf("   NV0=%d  NCASCADES=%d  NKINKS=%d\n", nV0s, nCascades, nKinks);\r
+       \r
+    AODEvent()->ResetStd(nTracks, nVertices, nV0s, nCascades, nJets, nCaloClus, nFmdClus, nPmdClus);\r
+\r
+\r
+    AliAODTrack   *aodTrack       = 0x0;\r
+    AliAODPid     *detpid         = 0x0;\r
+    Double_t      timezero        = 0;   //TO BE FIXED\r
+    AliAODVertex  *vV0FromCascade = 0x0;\r
+    AliAODv0      *aodV0          = 0x0;\r
+    AliAODcascade *aodCascade     = 0x0;\r
+    \r
+    // RefArray to store the mapping between esd track number and newly created AOD-Track\r
+    TRefArray   *aodTrackRefs = NULL;\r
+    if (nTracks > 0) aodTrackRefs = new TRefArray(nTracks);\r
+\r
+    // RefArray to store a mapping between esd V0 number and newly created AOD-Vertex V0\r
+    TRefArray   *aodV0VtxRefs = NULL;\r
+    if (nV0s > 0) aodV0VtxRefs = new TRefArray(nV0s);\r
+\r
+    // RefArray to store the mapping between esd V0 number and newly created AOD-V0\r
+    TRefArray   *aodV0Refs = NULL;\r
+    if (nV0s > 0) aodV0Refs = new TRefArray(nV0s);\r
+\r
+    \r
+\r
+\r
+\r
+    // Array to take into account the tracks already added to the AOD\r
+    Bool_t * usedTrack = NULL;\r
+    if (nTracks>0) {\r
+       usedTrack = new Bool_t[nTracks];\r
+       for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) usedTrack[iTrack]=kFALSE;\r
+    }\r
+    // Array to take into account the V0s already added to the AOD (V0 within cascades)\r
+    Bool_t * usedV0 = NULL;\r
+    if (nV0s>0) {\r
+       usedV0 = new Bool_t[nV0s];\r
+       for (Int_t iV0=0; iV0<nV0s; ++iV0) usedV0[iV0]=kFALSE;\r
+    }\r
+    // Array to take into account the kinks already added to the AOD\r
+    Bool_t * usedKink = NULL;\r
+    if (nKinks>0) {\r
+       usedKink = new Bool_t[nKinks];\r
+       for (Int_t iKink=0; iKink<nKinks; ++iKink) usedKink[iKink]=kFALSE;\r
+    }\r
+    \r
+    // Access to the AOD container of vertices\r
+    TClonesArray &vertices = *(AODEvent()->GetVertices());\r
+    Int_t jVertices=0;\r
+    \r
+    // Access to the AOD container of tracks\r
+    TClonesArray &tracks = *(AODEvent()->GetTracks());\r
+    Int_t jTracks=0; \r
+    \r
+    // Access to the AOD container of Cascades\r
+    TClonesArray &cascades = *(AODEvent()->GetCascades());\r
+    Int_t jCascades=0;\r
+\r
+    // Access to the AOD container of V0s\r
+    TClonesArray &v0s = *(AODEvent()->GetV0s());\r
+    Int_t jV0s=0;\r
+    \r
+    // Add primary vertex. The primary tracks will be defined\r
+    // after the loops on the composite objects (V0, cascades, kinks)\r
+    const AliESDVertex *vtx = esd->GetPrimaryVertex();\r
+    \r
+    vtx->GetXYZ(pos); // position\r
+    vtx->GetCovMatrix(covVtx); //covariance matrix\r
+    \r
+    AliAODVertex * primary = new(vertices[jVertices++])\r
+       AliAODVertex(pos, covVtx, vtx->GetChi2toNDF(), NULL, -1, AliAODVertex::kPrimary);\r
+    primary->SetName(vtx->GetName());\r
+    primary->SetTitle(vtx->GetTitle());\r
+\r
+    TString vtitle = vtx->GetTitle();\r
+    if (!vtitle.Contains("VertexerTracks")) \r
+      primary->SetNContributors(vtx->GetNContributors());\r
+\r
+    if (fDebug > 0) primary->Print();\r
+\r
+\r
+    // Add SPD "main" vertex \r
+    const AliESDVertex *vtxS = esd->GetPrimaryVertexSPD();\r
+    vtxS->GetXYZ(pos); // position\r
+    vtxS->GetCovMatrix(covVtx); //covariance matrix\r
+    AliAODVertex * mVSPD = new(vertices[jVertices++])\r
+      AliAODVertex(pos, covVtx, vtxS->GetChi2toNDF(), NULL, -1, AliAODVertex::kMainSPD);\r
+    mVSPD->SetName(vtxS->GetName());\r
+    mVSPD->SetTitle(vtxS->GetTitle());\r
+    mVSPD->SetNContributors(vtxS->GetNContributors()); \r
+\r
+    // Add SPD pileup vertices\r
+    for(Int_t iV=0; iV<nPileSPDVertices-1; iV++){\r
+      const AliESDVertex *vtxP = esd->GetPileupVertexSPD(iV);\r
+      vtxP->GetXYZ(pos); // position\r
+      vtxP->GetCovMatrix(covVtx); //covariance matrix\r
+      AliAODVertex * pVSPD =  new(vertices[jVertices++])\r
+       AliAODVertex(pos, covVtx, vtxP->GetChi2toNDF(), NULL, -1, AliAODVertex::kPileupSPD);\r
+      pVSPD->SetName(vtxP->GetName());\r
+      pVSPD->SetTitle(vtxP->GetTitle());\r
+      pVSPD->SetNContributors(vtxP->GetNContributors()); \r
+    }\r
+\r
+    // Add TRK pileup vertices\r
+    for(Int_t iV=0; iV<nPileTrkVertices; iV++){\r
+      const AliESDVertex *vtxP = esd->GetPileupVertexTracks(iV);\r
+      vtxP->GetXYZ(pos); // position\r
+      vtxP->GetCovMatrix(covVtx); //covariance matrix\r
+      AliAODVertex * pVTRK = new(vertices[jVertices++])\r
+       AliAODVertex(pos, covVtx, vtxP->GetChi2toNDF(), NULL, -1, AliAODVertex::kPileupTracks);\r
+      pVTRK->SetName(vtxP->GetName());\r
+      pVTRK->SetTitle(vtxP->GetTitle());\r
+      pVTRK->SetNContributors(vtxP->GetNContributors());\r
+    }\r
+\r
+    // Create vertices starting from the most complex objects\r
+    Double_t chi2 = 0.;\r
+    \r
+    // Cascades (Modified by A.Maire - February 2009)\r
+    for (Int_t nCascade = 0; nCascade < nCascades; ++nCascade) {\r
+\r
+       if (fDebug > 1) \r
+       printf("\n ******** Cascade number : %d/%d *********\n", nCascade, nCascades);\r
+\r
+       // 0- Preparation\r
+       //\r
+       AliESDcascade *esdCascade = esd->GetCascade(nCascade);\r
+               Int_t  idxPosFromV0Dghter  = esdCascade->GetPindex();\r
+               Int_t  idxNegFromV0Dghter  = esdCascade->GetNindex();\r
+               Int_t  idxBachFromCascade  = esdCascade->GetBindex();\r
+       \r
+       AliESDtrack  *esdCascadePos  = esd->GetTrack( idxPosFromV0Dghter);\r
+       AliESDtrack  *esdCascadeNeg  = esd->GetTrack( idxNegFromV0Dghter);\r
+       AliESDtrack  *esdCascadeBach = esd->GetTrack( idxBachFromCascade);\r
+\r
+       // Identification of the V0 within the esdCascade (via both daughter track indices)\r
+       AliESDv0 * currentV0   = 0x0;\r
+       Int_t      idxV0FromCascade = -1;\r
+       \r
+       for (Int_t iV0=0; iV0<nV0s; ++iV0) {\r
+       \r
+                        currentV0 = esd->GetV0(iV0);\r
+               Int_t posCurrentV0 = currentV0->GetPindex();\r
+               Int_t negCurrentV0 = currentV0->GetNindex();\r
+       \r
+               if (posCurrentV0==idxPosFromV0Dghter && negCurrentV0==idxNegFromV0Dghter) {\r
+               idxV0FromCascade = iV0;\r
+               break;\r
+               }\r
+       }\r
+\r
+       if(idxV0FromCascade < 0){\r
+               printf("Cascade - no matching for the V0 (index V0 = -1) ! Skip ... \n");\r
+               continue;\r
+       }// a priori, useless check, but safer ... in case of pb with tracks "out of bounds"\r
+\r
+       if (fDebug > 1) \r
+               printf("Cascade %d - V0fromCascade ind : %d/%d\n", nCascade, idxV0FromCascade, nV0s);\r
+\r
+       AliESDv0 *esdV0FromCascade   = esd->GetV0(idxV0FromCascade);\r
+       \r
+\r
+       // 1 - Cascade selection \r
+       \r
+       //      AliESDVertex *esdPrimVtx = new AliESDVertex(*(esd->GetPrimaryVertex()));\r
+       //      TList cascadeObjects;\r
+       //      cascadeObjects.AddAt(esdV0FromCascade, 0);\r
+       //      cascadeObjects.AddAt(esdCascadePos,    1);\r
+       //      cascadeObjects.AddAt(esdCascadeNeg,    2);\r
+       //      cascadeObjects.AddAt(esdCascade,       3);\r
+       //      cascadeObjects.AddAt(esdCascadeBach,   4);\r
+       //      cascadeObjects.AddAt(esdPrimVtx,       5);\r
+       // \r
+       //      UInt_t selectCascade = 0;\r
+       //      if (fCascadeFilter) {\r
+       //        // selectCascade = fCascadeFilter->IsSelected(&cascadeObjects); \r
+       //              // FIXME AliESDCascadeCuts to be implemented ...\r
+       // \r
+       //              // Here we may encounter a moot point at the V0 level \r
+       //              // between the cascade selections and the V0 ones :\r
+       //              // the V0 selected along with the cascade (secondary V0) may \r
+       //              // usually be removed from the dedicated V0 selections (prim V0) ...\r
+       //              // -> To be discussed !\r
+       // \r
+       //        // this is a little awkward but otherwise the \r
+       //        // list wants to access the pointer (delete it) \r
+       //        // again when going out of scope\r
+       //        delete cascadeObjects.RemoveAt(5); // esdPrimVtx created via copy construct\r
+       //        esdPrimVtx = 0;\r
+       //        if (!selectCascade) \r
+       //          continue;\r
+       //      }\r
+       //      else{\r
+       //        delete cascadeObjects.RemoveAt(5); // esdPrimVtx created via copy construct\r
+       //        esdPrimVtx = 0;\r
+       //      }\r
+\r
+       // 2 - Add the cascade vertex\r
+       \r
+       esdCascade->GetXYZcascade(pos[0], pos[1], pos[2]);\r
+       esdCascade->GetPosCovXi(covVtx);\r
+       chi2 = esdCascade->GetChi2Xi(); \r
+       \r
+       AliAODVertex *vCascade = new(vertices[jVertices++]) AliAODVertex( pos,\r
+                                                                         covVtx,\r
+                                                                         chi2, // FIXME = Chi2/NDF will be needed\r
+                                                                         primary,\r
+                                                                         nCascade, // id\r
+                                                                         AliAODVertex::kCascade);\r
+       primary->AddDaughter(vCascade);\r
+\r
+       if (fDebug > 2) {\r
+               printf("---- Cascade / Cascade Vertex (AOD) : \n");\r
+               vCascade->Print();\r
+       }\r
+\r
+\r
+       // 3 - Add the bachelor track from the cascade\r
+       \r
+       if (!usedTrack[idxBachFromCascade]) {\r
+\r
+       esdCascadeBach->GetPxPyPz(momBach);\r
+       esdCascadeBach->GetXYZ(pos);\r
+       esdCascadeBach->GetCovarianceXYZPxPyPz(covTr);\r
+       esdCascadeBach->GetESDpid(pid);\r
+\r
+           usedTrack[idxBachFromCascade] = kTRUE;\r
+           UInt_t selectInfo = 0;\r
+           if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadeBach);\r
+           if(mcH)mcH->SelectParticle(esdCascadeBach->GetLabel());\r
+           aodTrack = new(tracks[jTracks++]) AliAODTrack(esdCascadeBach->GetID(),\r
+                                                         esdCascadeBach->GetLabel(), \r
+                                                         momBach, \r
+                                                         kTRUE,\r
+                                                         pos,\r
+                                                         kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
+                                                         covTr, \r
+                                                         (Short_t)esdCascadeBach->GetSign(),\r
+                                                         esdCascadeBach->GetITSClusterMap(), \r
+                                                         pid,\r
+                                                         vCascade,\r
+                                                         kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
+                                                         vtx->UsesTrack(esdCascadeBach->GetID()),\r
+                                                         AliAODTrack::kSecondary,\r
+                                                         selectInfo);\r
+           aodTrack->SetTPCClusterMap(esdCascadeBach->GetTPCClusterMap());\r
+           aodTrack->SetTPCSharedMap (esdCascadeBach->GetTPCSharedMap());\r
+           aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadeBach));\r
+           aodTrackRefs->AddAt(aodTrack,idxBachFromCascade);\r
+           \r
+           if (esdCascadeBach->GetSign() > 0) nPosTracks++;\r
+           aodTrack->ConvertAliPIDtoAODPID();\r
+           aodTrack->SetFlags(esdCascadeBach->GetStatus());\r
+            SetAODPID(esdCascadeBach,aodTrack,detpid,timezero,esd->GetMagneticField());\r
+       }\r
+       else {\r
+           aodTrack = dynamic_cast<AliAODTrack*>( aodTrackRefs->At(idxBachFromCascade) );\r
+       }\r
+\r
+       vCascade->AddDaughter(aodTrack);\r
+\r
+       if (fDebug > 4) {\r
+               printf("---- Cascade / bach dghter : \n");\r
+               aodTrack->Print();\r
+       }\r
+       \r
+\r
+       // 4 - Add the V0 from the cascade. \r
+       // = V0vtx + both pos and neg daughter tracks + the aodV0 itself\r
+       //\r
+\r
+       if ( !usedV0[idxV0FromCascade] ) {\r
+       // 4.A - if VO structure hasn't been created yet\r
+               \r
+               // 4.A.1 - Create the V0 vertex of the cascade\r
+       \r
+               esdV0FromCascade->GetXYZ(pos[0], pos[1], pos[2]);\r
+               esdV0FromCascade->GetPosCov(covVtx);\r
+               chi2 = esdV0FromCascade->GetChi2V0();  // = chi2/NDF since NDF = 2*2-3 ?\r
+                       \r
+               vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,\r
+                                                                       covVtx,\r
+                                                                       chi2,\r
+                                                                       vCascade,\r
+                                                                       idxV0FromCascade, //id of ESDv0\r
+                                                                       AliAODVertex::kV0);\r
+               // Note:\r
+               //    one V0 can be used by several cascades.\r
+               // So, one AOD V0 vtx can have several parent vtx.\r
+               // This is not directly allowed by AliAODvertex.\r
+               // Setting the parent vtx (here = param "vCascade") doesn't lead to a crash\r
+               // but to a problem of consistency within AODEvent.\r
+               // -> See below paragraph 4.B, for the proposed treatment of such a case.\r
+\r
+               // Add the vV0FromCascade to the aodVOVtxRefs\r
+               aodV0VtxRefs->AddAt(vV0FromCascade,idxV0FromCascade);\r
+               \r
+               \r
+               // 4.A.2 - Add the positive tracks from the V0\r
+               \r
+               esdCascadePos->GetPxPyPz(momPos);\r
+               esdCascadePos->GetXYZ(pos);\r
+               esdCascadePos->GetCovarianceXYZPxPyPz(covTr);\r
+               esdCascadePos->GetESDpid(pid);\r
+               \r
+       \r
+               if (!usedTrack[idxPosFromV0Dghter]) {\r
+               usedTrack[idxPosFromV0Dghter] = kTRUE;\r
+       \r
+               UInt_t selectInfo = 0;\r
+               if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadePos);\r
+               if(mcH) mcH->SelectParticle(esdCascadePos->GetLabel());\r
+               aodTrack = new(tracks[jTracks++]) AliAODTrack(  esdCascadePos->GetID(),\r
+                                                               esdCascadePos->GetLabel(), \r
+                                                               momPos, \r
+                                                               kTRUE,\r
+                                                               pos,\r
+                                                               kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
+                                                               covTr, \r
+                                                               (Short_t)esdCascadePos->GetSign(),\r
+                                                               esdCascadePos->GetITSClusterMap(), \r
+                                                               pid,\r
+                                                               vV0FromCascade,\r
+                                                               kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
+                                                               vtx->UsesTrack(esdCascadePos->GetID()),\r
+                                                               AliAODTrack::kSecondary,\r
+                                                               selectInfo);\r
+               aodTrack->SetTPCClusterMap(esdCascadePos->GetTPCClusterMap());\r
+               aodTrack->SetTPCSharedMap (esdCascadePos->GetTPCSharedMap());\r
+               aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadePos));\r
+               aodTrackRefs->AddAt(aodTrack,idxPosFromV0Dghter);\r
+\r
+               if (esdCascadePos->GetSign() > 0) nPosTracks++;\r
+               aodTrack->ConvertAliPIDtoAODPID();\r
+               aodTrack->SetFlags(esdCascadePos->GetStatus());\r
+               SetAODPID(esdCascadePos,aodTrack,detpid,timezero,esd->GetMagneticField());\r
+               }\r
+               else {\r
+                       aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(idxPosFromV0Dghter));\r
+               }\r
+               vV0FromCascade->AddDaughter(aodTrack);\r
+       \r
+       \r
+               // 4.A.3 - Add the negative tracks from the V0\r
+               \r
+               esdCascadeNeg->GetPxPyPz(momNeg);\r
+               esdCascadeNeg->GetXYZ(pos);\r
+               esdCascadeNeg->GetCovarianceXYZPxPyPz(covTr);\r
+               esdCascadeNeg->GetESDpid(pid);\r
+               \r
+               \r
+               if (!usedTrack[idxNegFromV0Dghter]) {\r
+               usedTrack[idxNegFromV0Dghter] = kTRUE;\r
+       \r
+               UInt_t selectInfo = 0;\r
+               if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdCascadeNeg);\r
+               if(mcH)mcH->SelectParticle(esdCascadeNeg->GetLabel());\r
+               aodTrack = new(tracks[jTracks++]) AliAODTrack(  esdCascadeNeg->GetID(),\r
+                                                               esdCascadeNeg->GetLabel(),\r
+                                                               momNeg,\r
+                                                               kTRUE,\r
+                                                               pos,\r
+                                                               kFALSE, // Why kFALSE for "isDCA" ? FIXME\r
+                                                               covTr, \r
+                                                               (Short_t)esdCascadeNeg->GetSign(),\r
+                                                               esdCascadeNeg->GetITSClusterMap(), \r
+                                                               pid,\r
+                                                               vV0FromCascade,\r
+                                                               kTRUE,  // usedForVtxFit = kFALSE ? FIXME\r
+                                                               vtx->UsesTrack(esdCascadeNeg->GetID()),\r
+                                                               AliAODTrack::kSecondary,\r
+                                                               selectInfo);\r
+               aodTrack->SetTPCClusterMap(esdCascadeNeg->GetTPCClusterMap());\r
+               aodTrack->SetTPCSharedMap (esdCascadeNeg->GetTPCSharedMap());\r
+               aodTrack->SetChi2perNDF(Chi2perNDF(esdCascadeNeg));\r
+               aodTrackRefs->AddAt(aodTrack,idxNegFromV0Dghter);\r
+               \r
+               if (esdCascadeNeg->GetSign() > 0) nPosTracks++;\r
+               aodTrack->ConvertAliPIDtoAODPID();\r
+               aodTrack->SetFlags(esdCascadeNeg->GetStatus());\r
+               SetAODPID(esdCascadeNeg,aodTrack,detpid,timezero,esd->GetMagneticField());\r
+               }\r
+               else {\r
+                       aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(idxNegFromV0Dghter));\r
+               }\r
+       \r
+               vV0FromCascade->AddDaughter(aodTrack);\r
+       \r
+                       \r
+               // 4.A.4 - Add the V0 from cascade to the V0 array\r
+\r
+               Double_t  dcaV0Daughters      = esdV0FromCascade->GetDcaV0Daughters();\r
+               Double_t  dcaV0ToPrimVertex   = esdV0FromCascade->GetD( esd->GetPrimaryVertex()->GetX(),\r
+                                                                       esd->GetPrimaryVertex()->GetY(),\r
+                                                                       esd->GetPrimaryVertex()->GetZ() );\r
+               esdV0FromCascade->GetPPxPyPz( momPosAtV0vtx[0],momPosAtV0vtx[1],momPosAtV0vtx[2] ); \r
+               esdV0FromCascade->GetNPxPyPz( momNegAtV0vtx[0],momNegAtV0vtx[1],momNegAtV0vtx[2] ); \r
+       \r
+               Double_t dcaDaughterToPrimVertex[2] = { 999., 999.}; // ..[0] = DCA in (x,y) for Pos and ..[1] = Neg\r
+               dcaDaughterToPrimVertex[0] = TMath::Abs(esdCascadePos->GetD(    esd->GetPrimaryVertex()->GetX(),\r
+                                                                               esd->GetPrimaryVertex()->GetY(),\r
+                                                                               esd->GetMagneticField())        );\r
+               dcaDaughterToPrimVertex[1] = TMath::Abs(esdCascadeNeg->GetD(    esd->GetPrimaryVertex()->GetX(),\r
+                                                                               esd->GetPrimaryVertex()->GetY(),\r
+                                                                               esd->GetMagneticField())        );\r
+               \r
+               aodV0 = new(v0s[jV0s++]) AliAODv0( vV0FromCascade, \r
+                                                  dcaV0Daughters,\r
+                                                  dcaV0ToPrimVertex, \r
+                                                  momPosAtV0vtx, \r
+                                                  momNegAtV0vtx, \r
+                                                  dcaDaughterToPrimVertex); \r
+               // set the aod v0 on-the-fly status\r
+               aodV0->SetOnFlyStatus(esdV0FromCascade->GetOnFlyStatus());\r
+\r
+               // Add the aodV0 to the aodVORefs\r
+               aodV0Refs->AddAt(aodV0,idxV0FromCascade);\r
+               \r
+       usedV0[idxV0FromCascade] = kTRUE;\r
+\r
+       } else { \r
+       // 4.B - if V0 structure already used\r
+\r
+               // Note :\r
+               //    one V0 can be used by several cascades (frequent in PbPb evts) : \r
+               // same V0 which used but attached to different bachelor tracks\r
+               // -> aodVORefs and aodV0VtxRefs are needed.\r
+               // Goal : avoid a redundancy of the info in "Vertices" and "v0s" clones array.\r
+       \r
+               vV0FromCascade = dynamic_cast<AliAODVertex*>( aodV0VtxRefs->At(idxV0FromCascade) );\r
+               aodV0          = dynamic_cast<AliAODv0*>    ( aodV0Refs   ->At(idxV0FromCascade) );\r
+                \r
+               // - Treatment of the parent for such a "re-used" V0 :\r
+               // Insert the cascade that reuses the V0 vertex in the lineage chain\r
+               // Before : vV0 -> vCascade1 -> vPrimary\r
+               //  - Hyp : cascade2 uses the same V0 as cascade1\r
+               //  After :  vV0 -> vCascade2 -> vCascade1 -> vPrimary\r
+               \r
+               AliAODVertex *vCascadePreviousParent = dynamic_cast<AliAODVertex*> (vV0FromCascade->GetParent());\r
+                       vV0FromCascade->SetParent(vCascade);\r
+                       vCascade      ->SetParent(vCascadePreviousParent);\r
+\r
+               if(fDebug > 2)  \r
+                       printf("---- Cascade / Lineage insertion\n"\r
+                               "Parent of V0 vtx                 = Cascade vtx %p\n"\r
+                               "Parent of the cascade vtx        = Cascade vtx %p\n"\r
+                               "Parent of the parent cascade vtx = Cascade vtx %p\n", \r
+                                               static_cast<void*> (vV0FromCascade->GetParent()),\r
+                                               static_cast<void*> (vCascade->GetParent()),\r
+                                               static_cast<void*> (vCascadePreviousParent->GetParent()) );\r
+               \r
+       }// end if V0 structure already used\r
+\r
+       if (fDebug > 2) {\r
+               printf("---- Cascade / V0 vertex: \n");\r
+               vV0FromCascade->Print();\r
+       }\r
+\r
+       if (fDebug > 4) {\r
+               printf("---- Cascade / pos dghter : \n");\r
+                       aodTrack->Print();\r
+               printf("---- Cascade / neg dghter : \n");\r
+                       aodTrack->Print();\r
+               printf("---- Cascade / aodV0 : \n");\r
+                       aodV0->Print();\r
+       }\r
+\r
+       // In any case (used V0 or not), add the V0 vertex to the cascade one.\r
+       vCascade->AddDaughter(vV0FromCascade);  \r
+       \r
+               \r
+       // 5 - Add the primary track of the cascade (if any)\r
+\r
+\r
+       // 6 - Add the cascade to the AOD array of cascades\r
+\r
+       Double_t dcaBachToPrimVertexXY = TMath::Abs(esdCascadeBach->GetD(esd->GetPrimaryVertex()->GetX(),\r
+                                                                        esd->GetPrimaryVertex()->GetY(),\r
+                                                                        esd->GetMagneticField())        );\r
+\r
+       esdCascade->GetBPxPyPz(momBachAtCascadeVtx[0], momBachAtCascadeVtx[1], momBachAtCascadeVtx[2]);\r
+\r
+       aodCascade = new(cascades[jCascades++]) AliAODcascade(  vCascade,\r
+                                                               esdCascade->Charge(),\r
+                                                               esdCascade->GetDcaXiDaughters(),\r
+                                                               -999.,\r
+               // DCAXiToPrimVtx -> needs to be calculated   ----|\r
+               // doesn't exist at ESD level;\r
+               // See AODcascade::DcaXiToPrimVertex(Double, Double, Double)\r
+                                                               dcaBachToPrimVertexXY,\r
+                                                               momBachAtCascadeVtx,\r
+                                                               *aodV0);\r
+       \r
+       if (fDebug > 3) {\r
+               printf("---- Cascade / AOD cascade : \n\n");\r
+               aodCascade->PrintXi(primary->GetX(), primary->GetY(), primary->GetZ());\r
+       }\r
+\r
+    } // end of the loop on cascades\r
+\r
+    cascades.Expand(jCascades);\r
+\r
+\r
+    //\r
+    // V0s\r
+    //\r
+    \r
+    for (Int_t nV0 = 0; nV0 < nV0s; ++nV0) {\r
+       \r
+       if (usedV0[nV0]) continue; // skip if already added to the AOD\r
+       \r
+       AliESDv0 *v0 = esd->GetV0(nV0);\r
+       Int_t posFromV0 = v0->GetPindex();\r
+       Int_t negFromV0 = v0->GetNindex();\r
+       \r
+       // V0 selection \r
+       //\r
+       AliESDVertex *esdVtx   = new AliESDVertex(*(esd->GetPrimaryVertex()));\r
+       AliESDtrack  *esdV0Pos = esd->GetTrack(posFromV0);\r
+       AliESDtrack  *esdV0Neg = esd->GetTrack(negFromV0);\r
+       TList v0objects;\r
+       v0objects.AddAt(v0,                      0);\r
+       v0objects.AddAt(esdV0Pos,                1);\r
+       v0objects.AddAt(esdV0Neg,                2);\r
+       v0objects.AddAt(esdVtx,                  3);\r
+       UInt_t selectV0 = 0;\r
+       if (fV0Filter) {\r
+         selectV0 = fV0Filter->IsSelected(&v0objects);\r
+         // this is a little awkward but otherwise the \r
+         // list wants to access the pointer (delete it) \r
+         // again when going out of scope\r
+         delete v0objects.RemoveAt(3); // esdVtx created via copy construct\r
+         esdVtx = 0;\r
+         if (!selectV0) \r
+           continue;\r
+       }\r
+       else{\r
+         delete v0objects.RemoveAt(3); // esdVtx created via copy construct\r
+         esdVtx = 0;\r
+       }\r
+    \r
+       v0->GetXYZ(pos[0], pos[1], pos[2]);\r
+\r
+       if (!old) {\r
+           chi2 = v0->GetChi2V0(); // = chi2/NDF since NDF = 2*2-3\r
+           v0->GetPosCov(covVtx);\r
+       } else {\r
+           chi2 = -999.;\r
+           for (Int_t i = 0; i < 6; i++)  covVtx[i] = 0.;\r
+       }\r
+\r
+\r
+       AliAODVertex * vV0 = \r
+         new(vertices[jVertices++]) AliAODVertex(pos,\r
+                                                 covVtx,\r
+                                                 chi2,\r
+                                                 primary,\r
+                                                 nV0,\r
+                                                 AliAODVertex::kV0);\r
+       primary->AddDaughter(vV0);\r
+       \r
+\r
+       // Add the positive tracks from the V0\r
+       \r
+       esdV0Pos->GetPxPyPz(momPos);\r
+       esdV0Pos->GetXYZ(pos);\r
+       esdV0Pos->GetCovarianceXYZPxPyPz(covTr);\r
+       esdV0Pos->GetESDpid(pid);\r
+       \r
+       if (!usedTrack[posFromV0]) {\r
+           usedTrack[posFromV0] = kTRUE;\r
+           UInt_t selectInfo = 0;\r
+           if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Pos);\r
+           if(mcH)mcH->SelectParticle(esdV0Pos->GetLabel());\r
+           aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Pos->GetID(),\r
+                                                         esdV0Pos->GetLabel(), \r
+                                                         momPos, \r
+                                                         kTRUE,\r
+                                                         pos,\r
+                                                         kFALSE,\r
+                                                         covTr, \r
+                                                         (Short_t)esdV0Pos->GetSign(),\r
+                                                         esdV0Pos->GetITSClusterMap(), \r
+                                                         pid,\r
+                                                         vV0,\r
+                                                         kTRUE,  // check if this is right\r
+                                                         vtx->UsesTrack(esdV0Pos->GetID()),\r
+                                                         AliAODTrack::kSecondary,\r
+                                                         selectInfo);\r
+           aodTrack->SetTPCClusterMap(esdV0Pos->GetTPCClusterMap());\r
+           aodTrack->SetTPCSharedMap (esdV0Pos->GetTPCSharedMap());\r
+           aodTrack->SetChi2perNDF(Chi2perNDF(esdV0Pos));\r
+           aodTrackRefs->AddAt(aodTrack,posFromV0);\r
+           //      if (fDebug > 0) printf("-------------------Bo: pos track from original pt %.3f \n",aodTrack->Pt());\r
+           if (esdV0Pos->GetSign() > 0) nPosTracks++;\r
+           aodTrack->ConvertAliPIDtoAODPID();\r
+           aodTrack->SetFlags(esdV0Pos->GetStatus());\r
+            SetAODPID(esdV0Pos,aodTrack,detpid,timezero,esd->GetMagneticField());\r
+       }\r
+       else {\r
+           aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(posFromV0));\r
+           //      if (fDebug > 0) printf("-------------------Bo pos track from refArray pt %.3f \n",aodTrack->Pt());\r
+       }\r
+       vV0->AddDaughter(aodTrack);\r
+    \r
+       // Add the negative tracks from the V0\r
+       \r
+       esdV0Neg->GetPxPyPz(momNeg);\r
+       esdV0Neg->GetXYZ(pos);\r
+       esdV0Neg->GetCovarianceXYZPxPyPz(covTr);\r
+       esdV0Neg->GetESDpid(pid);\r
+       \r
+       if (!usedTrack[negFromV0]) {\r
+           usedTrack[negFromV0] = kTRUE;\r
+           UInt_t selectInfo = 0;\r
+           if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdV0Neg);\r
+           if(mcH)mcH->SelectParticle(esdV0Neg->GetLabel());\r
+           aodTrack = new(tracks[jTracks++]) AliAODTrack(esdV0Neg->GetID(),\r
+                                                         esdV0Neg->GetLabel(),\r
+                                                         momNeg,\r
+                                                         kTRUE,\r
+                                                         pos,\r
+                                                         kFALSE,\r
+                                                         covTr, \r
+                                                         (Short_t)esdV0Neg->GetSign(),\r
+                                                         esdV0Neg->GetITSClusterMap(), \r
+                                                         pid,\r
+                                                         vV0,\r
+                                                         kTRUE,  // check if this is right\r
+                                                         vtx->UsesTrack(esdV0Neg->GetID()),\r
+                                                         AliAODTrack::kSecondary,\r
+                                                         selectInfo);\r
+           aodTrack->SetTPCClusterMap(esdV0Neg->GetTPCClusterMap());\r
+           aodTrack->SetTPCSharedMap (esdV0Neg->GetTPCSharedMap());\r
+           aodTrack->SetChi2perNDF(Chi2perNDF(esdV0Neg));\r
+           \r
+           aodTrackRefs->AddAt(aodTrack,negFromV0);\r
+           //      if (fDebug > 0) printf("-------------------Bo: neg track from original pt %.3f \n",aodTrack->Pt());\r
+           if (esdV0Neg->GetSign() > 0) nPosTracks++;\r
+           aodTrack->ConvertAliPIDtoAODPID();\r
+           aodTrack->SetFlags(esdV0Neg->GetStatus());\r
+            SetAODPID(esdV0Neg,aodTrack,detpid,timezero,esd->GetMagneticField());\r
+       }\r
+       else {\r
+           aodTrack = dynamic_cast<AliAODTrack*>(aodTrackRefs->At(negFromV0));\r
+           //      if (fDebug > 0) printf("-------------------Bo neg track from refArray pt %.3f \n",aodTrack->Pt());\r
+       }\r
+       vV0->AddDaughter(aodTrack);\r
+\r
+\r
+       // Add the V0 the V0 array as well\r
+       \r
+       Double_t  dcaV0Daughters      = v0->GetDcaV0Daughters();\r
+       Double_t  dcaV0ToPrimVertex   = v0->GetD(esd->GetPrimaryVertex()->GetX(),\r
+                                                esd->GetPrimaryVertex()->GetY(),\r
+                                                esd->GetPrimaryVertex()->GetZ());\r
+       v0->GetPPxPyPz(momPosAtV0vtx[0],momPosAtV0vtx[1],momPosAtV0vtx[2]); \r
+       v0->GetNPxPyPz(momNegAtV0vtx[0],momNegAtV0vtx[1],momNegAtV0vtx[2]); \r
+       \r
+       Double_t dcaDaughterToPrimVertex[2] = { 999., 999.}; // ..[0] = DCA in (x,y) for Pos and ..[1] = Neg\r
+       dcaDaughterToPrimVertex[0] = TMath::Abs(esdV0Pos->GetD(  esd->GetPrimaryVertex()->GetX(),\r
+                                                                esd->GetPrimaryVertex()->GetY(),\r
+                                                                       esd->GetMagneticField()) );\r
+       dcaDaughterToPrimVertex[1] = TMath::Abs(esdV0Neg->GetD(  esd->GetPrimaryVertex()->GetX(),\r
+                                                                esd->GetPrimaryVertex()->GetY(),\r
+                                                                       esd->GetMagneticField()) );\r
+       \r
+       aodV0 = new(v0s[jV0s++]) AliAODv0(vV0, \r
+                                       dcaV0Daughters,\r
+                                       dcaV0ToPrimVertex,\r
+                                       momPosAtV0vtx,\r
+                                       momNegAtV0vtx,\r
+                                       dcaDaughterToPrimVertex);\r
+\r
+       // set the aod v0 on-the-fly status\r
+       aodV0->SetOnFlyStatus(v0->GetOnFlyStatus());\r
+    }//End of loop on V0s \r
+\r
+    v0s.Expand(jV0s);   \r
+\r
+    if (fDebug > 0)   printf("   NAODCascades=%d / NAODV0s=%d\n", jCascades, jV0s);\r
+    // end of V0 parts\r
+\r
+\r
+    // Kinks: it is a big mess the access to the information in the kinks\r
+    // The loop is on the tracks in order to find the mother and daugther of each kink\r
+    \r
+    \r
+    for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) {\r
+       \r
+       AliESDtrack * esdTrack = esd->GetTrack(iTrack);\r
+       \r
+       Int_t ikink = esdTrack->GetKinkIndex(0);\r
+       \r
+       if (ikink && nKinks) {\r
+           // Negative kink index: mother, positive: daughter\r
+           \r
+           // Search for the second track of the kink\r
+           \r
+           for (Int_t jTrack = iTrack+1; jTrack<nTracks; ++jTrack) {\r
+               \r
+               AliESDtrack * esdTrack1 = esd->GetTrack(jTrack);\r
+               \r
+               Int_t jkink = esdTrack1->GetKinkIndex(0);\r
+               \r
+               if ( TMath::Abs(ikink)==TMath::Abs(jkink) ) {\r
+                   \r
+                   // The two tracks are from the same kink\r
+                   \r
+                   if (usedKink[TMath::Abs(ikink)-1]) continue; // skip used kinks\r
+                   \r
+                   Int_t imother = -1;\r
+                   Int_t idaughter = -1;\r
+                   \r
+                   if (ikink<0 && jkink>0) {\r
+                       \r
+                       imother = iTrack;\r
+                       idaughter = jTrack;\r
+                   }\r
+                   else if (ikink>0 && jkink<0) {\r
+                       \r
+                       imother = jTrack;\r
+                       idaughter = iTrack;\r
+                   }\r
+                   else {\r
+//                     cerr << "Error: Wrong combination of kink indexes: "\r
+//                          << ikink << " " << jkink << endl;\r
+                       continue;\r
+                   }\r
+                   \r
+                   // Add the mother track if it passed primary track selection cuts\r
+                   \r
+                   AliAODTrack * mother = NULL;\r
+                   \r
+                   UInt_t selectInfo = 0;\r
+                   if (fTrackFilter) {\r
+                       selectInfo = fTrackFilter->IsSelected(esd->GetTrack(imother));\r
+                       if (!selectInfo) continue;\r
+                   }\r
+                   \r
+                   if (!usedTrack[imother]) {\r
+                       \r
+                       usedTrack[imother] = kTRUE;\r
+                       \r
+                       AliESDtrack *esdTrackM = esd->GetTrack(imother);\r
+                       esdTrackM->GetPxPyPz(p);\r
+                       esdTrackM->GetXYZ(pos);\r
+                       esdTrackM->GetCovarianceXYZPxPyPz(covTr);\r
+                       esdTrackM->GetESDpid(pid);\r
+                       if(mcH)mcH->SelectParticle(esdTrackM->GetLabel());\r
+                       mother = \r
+                           new(tracks[jTracks++]) AliAODTrack(esdTrackM->GetID(),\r
+                                                              esdTrackM->GetLabel(),\r
+                                                              p,\r
+                                                              kTRUE,\r
+                                                              pos,\r
+                                                              kFALSE,\r
+                                                              covTr, \r
+                                                              (Short_t)esdTrackM->GetSign(),\r
+                                                              esdTrackM->GetITSClusterMap(), \r
+                                                              pid,\r
+                                                              primary,\r
+                                                              kTRUE, // check if this is right\r
+                                                              vtx->UsesTrack(esdTrack->GetID()),\r
+                                                              AliAODTrack::kPrimary,\r
+                                                              selectInfo);\r
+                       mother->SetTPCClusterMap(esdTrackM->GetTPCClusterMap());\r
+                       mother->SetTPCSharedMap (esdTrackM->GetTPCSharedMap());\r
+                       mother->SetChi2perNDF(Chi2perNDF(esdTrackM));\r
+\r
+                       aodTrackRefs->AddAt(mother, imother);\r
+                       \r
+                       if (esdTrackM->GetSign() > 0) nPosTracks++;\r
+                       mother->SetFlags(esdTrackM->GetStatus());\r
+                       mother->ConvertAliPIDtoAODPID();\r
+                       primary->AddDaughter(mother);\r
+                       mother->ConvertAliPIDtoAODPID();\r
+                        SetAODPID(esdTrackM,mother,detpid,timezero,esd->GetMagneticField());\r
+                   }\r
+                   else {\r
+//                     cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1\r
+//                          << " track " << imother << " has already been used!" << endl;\r
+                 }\r
+                   \r
+                   // Add the kink vertex\r
+                   AliESDkink * kink = esd->GetKink(TMath::Abs(ikink)-1);\r
+                   \r
+                   AliAODVertex * vkink = \r
+                       new(vertices[jVertices++]) AliAODVertex(kink->GetPosition(),\r
+                                                               NULL,\r
+                                                               0.,\r
+                                                               mother,\r
+                                                               esdTrack->GetID(),  // This is the track ID of the mother's track!\r
+                                                               AliAODVertex::kKink);\r
+                   // Add the daughter track\r
+                 \r
+                   AliAODTrack * daughter = NULL;\r
+                   \r
+                   if (!usedTrack[idaughter]) {\r
+                       \r
+                       usedTrack[idaughter] = kTRUE;\r
+                       \r
+                       AliESDtrack *esdTrackD = esd->GetTrack(idaughter);\r
+                       esdTrackD->GetPxPyPz(p);\r
+                       esdTrackD->GetXYZ(pos);\r
+                       esdTrackD->GetCovarianceXYZPxPyPz(covTr);\r
+                       esdTrackD->GetESDpid(pid);\r
+                       selectInfo = 0;\r
+                       if (fTrackFilter) selectInfo = fTrackFilter->IsSelected(esdTrackD);\r
+                       if(mcH)mcH->SelectParticle(esdTrackD->GetLabel());\r
+                       daughter = \r
+                           new(tracks[jTracks++]) AliAODTrack(esdTrackD->GetID(),\r
+                                                              esdTrackD->GetLabel(),\r
+                                                              p,\r
+                                                              kTRUE,\r
+                                                              pos,\r
+                                                              kFALSE,\r
+                                                              covTr, \r
+                                                              (Short_t)esdTrackD->GetSign(),\r
+                                                              esdTrackD->GetITSClusterMap(), \r
+                                                              pid,\r
+                                                              vkink,\r
+                                                              kTRUE, // check if this is right\r
+                                                              vtx->UsesTrack(esdTrack->GetID()),\r
+                                                              AliAODTrack::kSecondary,\r
+                                                              selectInfo);\r
+                       daughter->SetTPCClusterMap(esdTrackD->GetTPCClusterMap());\r
+                       daughter->SetTPCSharedMap (esdTrackD->GetTPCSharedMap());\r
+                       aodTrackRefs->AddAt(daughter, idaughter);\r
+                       \r
+                       if (esdTrackD->GetSign() > 0) nPosTracks++;\r
+                       daughter->SetFlags(esdTrackD->GetStatus());\r
+                       daughter->ConvertAliPIDtoAODPID();\r
+                       vkink->AddDaughter(daughter);\r
+                       daughter->ConvertAliPIDtoAODPID();\r
+                       SetAODPID(esdTrackD,daughter,detpid,timezero,esd->GetMagneticField());\r
+                   }\r
+                   else {\r
+//                     cerr << "Error: event " << esd->GetEventNumberInFile() << " kink " << TMath::Abs(ikink)-1\r
+//                          << " track " << idaughter << " has already been used!" << endl;\r
+                   }\r
+               }\r
+           }\r
+       }      \r
+    }\r
+    \r
+  \r
+    // Tracks (primary and orphan)\r
+\r
+    if (fDebug > 0) printf("NUMBER OF ESD TRACKS %5d\n", nTracks);\r
+    \r
+    for (Int_t nTrack = 0; nTrack < nTracks; ++nTrack) {\r
+       \r
+       \r
+       if (usedTrack[nTrack]) continue;\r
+\r
+       AliESDtrack *esdTrack = esd->GetTrack(nTrack);\r
+       UInt_t selectInfo = 0;\r
+       //\r
+       // Track selection\r
+       if (fTrackFilter) {\r
+           selectInfo = fTrackFilter->IsSelected(esdTrack);\r
+           if (!selectInfo && !vtx->UsesTrack(esdTrack->GetID())) continue;\r
+       }\r
+       \r
+       //\r
+       esdTrack->GetPxPyPz(p);\r
+       esdTrack->GetXYZ(pos);\r
+       esdTrack->GetCovarianceXYZPxPyPz(covTr);\r
+       esdTrack->GetESDpid(pid);\r
+       if(mcH)mcH->SelectParticle(esdTrack->GetLabel());\r
+       primary->AddDaughter(aodTrack =\r
+                            new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),\r
+                                                               esdTrack->GetLabel(),\r
+                                                               p,\r
+                                                               kTRUE,\r
+                                                               pos,\r
+                                                               kFALSE,\r
+                                                               covTr, \r
+                                                               (Short_t)esdTrack->GetSign(),\r
+                                                               esdTrack->GetITSClusterMap(), \r
+                                                               pid,\r
+                                                               primary,\r
+                                                               kTRUE, // check if this is right\r
+                                                               vtx->UsesTrack(esdTrack->GetID()),\r
+                                                               AliAODTrack::kPrimary, \r
+                                                               selectInfo)\r
+                            );\r
+       aodTrack->SetTPCClusterMap(esdTrack->GetTPCClusterMap());\r
+       aodTrack->SetTPCSharedMap (esdTrack->GetTPCSharedMap());\r
+       aodTrack->SetChi2perNDF(Chi2perNDF(esdTrack));\r
+\r
+       aodTrackRefs->AddAt(aodTrack, nTrack);\r
+\r
+       \r
+       if (esdTrack->GetSign() > 0) nPosTracks++;\r
+       aodTrack->SetFlags(esdTrack->GetStatus());\r
+       aodTrack->ConvertAliPIDtoAODPID();\r
+       SetAODPID(esdTrack,aodTrack,detpid,timezero,esd->GetMagneticField());\r
+    } // end of loop on tracks\r
+    \r
+    // Update number of AOD tracks in header at the end of track loop (M.G.)\r
+    header->SetRefMultiplicity(jTracks);\r
+    header->SetRefMultiplicityPos(nPosTracks);\r
+    header->SetRefMultiplicityNeg(jTracks - nPosTracks);\r
+    if (fDebug > 0) \r
+      printf("   NAODTRACKS=%d  NPOS=%d  NNEG=%d\n", jTracks, nPosTracks, jTracks - nPosTracks);\r
+    // Do not shrink the array of tracks - other filters may add to it (M.G)\r
+    //   tracks.Expand(jTracks); // remove 'empty slots' due to unwritten tracks\r
+  \r
+    // Access to the AOD container of PMD clusters\r
+    TClonesArray &pmdClusters = *(AODEvent()->GetPmdClusters());\r
+    Int_t jPmdClusters=0;\r
+  \r
+    for (Int_t iPmd = 0; iPmd < nPmdClus; ++iPmd) {\r
+      // file pmd clusters, to be revised!\r
+      AliESDPmdTrack *pmdTrack = esd->GetPmdTrack(iPmd);\r
+      Int_t nLabel = 0;\r
+      Int_t *label = 0x0;\r
+      Double_t posPmd[3] = { pmdTrack->GetClusterX(), pmdTrack->GetClusterY(), pmdTrack->GetClusterZ()};\r
+      Double_t pidPmd[13] = { 0.}; // to be revised!\r
+      // type not set!\r
+      // assoc cluster not set\r
+      new(pmdClusters[jPmdClusters++]) AliAODPmdCluster(iPmd, nLabel, label, pmdTrack->GetClusterADC(), posPmd, pidPmd);\r
+    }\r
+\r
+    // Access to the AOD container of clusters\r
+    TClonesArray &caloClusters = *(AODEvent()->GetCaloClusters());\r
+    Int_t jClusters=0;\r
\r
+    for (Int_t iClust=0; iClust<nCaloClus; ++iClust) {\r
+\r
+      AliESDCaloCluster * cluster = esd->GetCaloCluster(iClust);\r
+\r
+      Int_t  id        = cluster->GetID();\r
+      Int_t  nLabel    = cluster->GetNLabels();\r
+      Int_t *labels    = cluster->GetLabels();\r
+      if(labels){ \r
+                 for(int i = 0;i < nLabel;++i){\r
+                         if(mcH)mcH->SelectParticle(labels[i]);\r
+                 }\r
+         }             \r
+\r
+      Float_t energy = cluster->E();\r
+      cluster->GetPosition(posF);\r
+\r
+      AliAODCaloCluster *caloCluster = new(caloClusters[jClusters++]) AliAODCaloCluster(id,\r
+                                                                                       nLabel,\r
+                                                                                       labels,\r
+                                                                                       energy,\r
+                                                                                       posF,\r
+                                                                                       NULL,\r
+                                                                                       cluster->GetType(),0);\r
+      \r
+      caloCluster->SetCaloCluster(cluster->GetDistanceToBadChannel(),\r
+                                 cluster->GetDispersion(),\r
+                                 cluster->GetM20(), cluster->GetM02(),\r
+                                 cluster->GetEmcCpvDistance(),  \r
+                                 cluster->GetNExMax(),cluster->GetTOF()) ;\r
+\r
+      caloCluster->SetPIDFromESD(cluster->GetPID());\r
+      caloCluster->SetNCells(cluster->GetNCells());\r
+      caloCluster->SetCellsAbsId(cluster->GetCellsAbsId());\r
+      caloCluster->SetCellsAmplitudeFraction(cluster->GetCellsAmplitudeFraction());\r
+\r
+      TArrayI* matchedT =      cluster->GetTracksMatched();\r
+      if (nTracks>0 && matchedT && cluster->GetTrackMatchedIndex() >= 0) {     \r
+       for (Int_t im = 0; im < matchedT->GetSize(); im++) {\r
+           Int_t iESDtrack = matchedT->At(im);;\r
+           if (aodTrackRefs->At(iESDtrack) != 0) {\r
+               caloCluster->AddTrackMatched((AliAODTrack*)aodTrackRefs->At(iESDtrack));\r
+           }\r
+       }\r
+      }\r
+      \r
+    } \r
+    caloClusters.Expand(jClusters); // resize TObjArray to 'remove' slots for pseudo clusters   \r
+    // end of loop on calo clusters\r
+\r
+    // fill EMCAL cell info\r
+    if (esd->GetEMCALCells()) { // protection against missing ESD information\r
+      AliESDCaloCells &esdEMcells = *(esd->GetEMCALCells());\r
+      Int_t nEMcell = esdEMcells.GetNumberOfCells() ;\r
+      \r
+      AliAODCaloCells &aodEMcells = *(AODEvent()->GetEMCALCells());\r
+      aodEMcells.CreateContainer(nEMcell);\r
+      aodEMcells.SetType(AliAODCaloCells::kEMCALCell);\r
+      for (Int_t iCell = 0; iCell < nEMcell; iCell++) {      \r
+       aodEMcells.SetCell(iCell,esdEMcells.GetCellNumber(iCell),esdEMcells.GetAmplitude(iCell));\r
+      }\r
+      aodEMcells.Sort();\r
+    }\r
+\r
+    // fill PHOS cell info\r
+    if (esd->GetPHOSCells()) { // protection against missing ESD information\r
+      AliESDCaloCells &esdPHcells = *(esd->GetPHOSCells());\r
+      Int_t nPHcell = esdPHcells.GetNumberOfCells() ;\r
+      \r
+      AliAODCaloCells &aodPHcells = *(AODEvent()->GetPHOSCells());\r
+      aodPHcells.CreateContainer(nPHcell);\r
+      aodPHcells.SetType(AliAODCaloCells::kPHOSCell);\r
+      for (Int_t iCell = 0; iCell < nPHcell; iCell++) {      \r
+       aodPHcells.SetCell(iCell,esdPHcells.GetCellNumber(iCell),esdPHcells.GetAmplitude(iCell));\r
+      }\r
+      aodPHcells.Sort();\r
+    }\r
+\r
+    // tracklets    \r
+    AliAODTracklets &SPDTracklets = *(AODEvent()->GetTracklets());\r
+    const AliMultiplicity *mult = esd->GetMultiplicity();\r
+    if (mult) {\r
+      if (mult->GetNumberOfTracklets()>0) {\r
+       SPDTracklets.CreateContainer(mult->GetNumberOfTracklets());\r
+\r
+       for (Int_t n=0; n<mult->GetNumberOfTracklets(); n++) {\r
+         if(mcH){\r
+           mcH->SelectParticle(mult->GetLabel(n, 0));\r
+           mcH->SelectParticle(mult->GetLabel(n, 1));\r
+         }\r
+         SPDTracklets.SetTracklet(n, mult->GetTheta(n), mult->GetPhi(n), mult->GetDeltaPhi(n), mult->GetLabel(n, 0),mult->GetLabel(n, 1));\r
+       }\r
+      }\r
+    } else {\r
+      //Printf("ERROR: AliMultiplicity could not be retrieved from ESD");\r
+    }\r
+\r
+    delete [] usedKink;\r
+    delete [] usedV0;\r
+    delete [] usedTrack;    \r
+    delete    aodV0Refs;\r
+    delete    aodV0VtxRefs;\r
+    delete    aodTrackRefs;\r
+\r
+    return;\r
+}\r
+\r
+\r
+void AliAnalysisTaskESDfilter::SetAODPID(AliESDtrack *esdtrack, AliAODTrack *aodtrack, AliAODPid *detpid, Double_t timezero, Double_t bfield)\r
+{\r
+  //\r
+  // Setter for the raw PID detector signals\r
+  //\r
+\r
+  // Save PID object for candidate electrons\r
+    Bool_t pidSave = kFALSE;\r
+    if (fTrackFilter) {\r
+       Bool_t selectInfo = fTrackFilter->IsSelected((char*) "Electrons");\r
+       if (selectInfo)  pidSave = kTRUE;\r
+    }\r
+\r
+\r
+    // Tracks passing pt cut \r
+    if(esdtrack->Pt()>fHighPthreshold) {\r
+       pidSave = kTRUE;\r
+    } else {\r
+       if(fPtshape){\r
+           if(esdtrack->Pt()> fPtshape->GetXmin()){\r
+               Double_t y = fPtshape->Eval(esdtrack->Pt())/fPtshape->Eval(fHighPthreshold);\r
+               if(gRandom->Rndm(0)<1./y){\r
+                   pidSave = kTRUE;\r
+               }//end rndm\r
+           }//end if p < pmin\r
+       }//end if p function\r
+    }// end else\r
+\r
+    if (pidSave) {\r
+      if(!aodtrack->GetDetPid()){// prevent memory leak when calling SetAODPID twice for the same track\r
+       detpid = new AliAODPid();\r
+       SetDetectorRawSignals(detpid,esdtrack,timezero, bfield);\r
+       aodtrack->SetDetPID(detpid);\r
+      }\r
+    }\r
+}\r
+\r
+void AliAnalysisTaskESDfilter::SetDetectorRawSignals(AliAODPid *aodpid, AliESDtrack *track, Double_t timezero, Double_t bfield)\r
+{\r
+//\r
+//assignment of the detector signals (AliXXXesdPID inspired)\r
+//\r
+ if(!track){\r
+ AliInfo("no ESD track found. .....exiting");\r
+ return;\r
+ }\r
+ // TPC momentum\r
+ const AliExternalTrackParam *in=track->GetInnerParam();\r
+ if (in) {\r
+   aodpid->SetTPCmomentum(in->GetP());\r
+ }else{\r
+   aodpid->SetTPCmomentum(-1.);\r
+ }\r
+\r
+\r
+ aodpid->SetITSsignal(track->GetITSsignal());\r
+ aodpid->SetTPCsignal(track->GetTPCsignal());\r
+\r
+ //n TRD planes = 6\r
+ Int_t nslices = track->GetNumberOfTRDslices()*6;\r
+ Double_t *trdslices = new Double_t[nslices];\r
+ for(Int_t iSl =0; iSl < track->GetNumberOfTRDslices(); iSl++) {\r
+   for(Int_t iPl =0; iPl<6; iPl++) trdslices[iPl*track->GetNumberOfTRDslices()+iSl] = track->GetTRDslice(iPl,iSl);\r
+ }\r
\r
+//TRD momentum\r
+ for(Int_t iPl=0;iPl<6;iPl++){\r
+   Double_t trdmom=track->GetTRDmomentum(iPl);\r
+   aodpid->SetTRDmomentum(iPl,trdmom);\r
+ }\r
+\r
+ aodpid->SetTRDsignal(track->GetNumberOfTRDslices()*6,trdslices);\r
+ Double_t times[AliAODPid::kSPECIES]; track->GetIntegratedTimes(times);\r
+ aodpid->SetIntegratedTimes(times);\r
+\r
+ aodpid->SetTOFsignal(track->GetTOFsignal()-timezero); // to be fixed\r
+ aodpid->SetHMPIDsignal(track->GetHMPIDsignal());\r
+\r
+ //Extrapolate track to EMCAL surface for AOD-level track-cluster matching\r
+ Double_t emcpos[3] = {0.,0.,0.};\r
+ Double_t emcmom[3] = {0.,0.,0.};\r
+ aodpid->SetEMCALPosition(emcpos);\r
+ aodpid->SetEMCALMomentum(emcmom);\r
+\r
+ AliExternalTrackParam *outerparam = (AliExternalTrackParam*)track->GetOuterParam();\r
+ if(!outerparam) return;\r
+\r
+ //To be replaced by call to AliEMCALGeoUtils when the class becomes available\r
+ Double_t radius = 441.0; //[cm] EMCAL radius +13cm\r
+\r
+ Bool_t okpos = outerparam->GetXYZAt(radius,bfield,emcpos);\r
+ Bool_t okmom = outerparam->GetPxPyPzAt(radius,bfield,emcmom);\r
+ if(!(okpos && okmom)) return;\r
+\r
+ aodpid->SetEMCALPosition(emcpos);\r
+ aodpid->SetEMCALMomentum(emcmom);\r
+\r
+}\r
+\r
+Double_t  AliAnalysisTaskESDfilter::Chi2perNDF(AliESDtrack* track)\r
+{\r
+    // Calculate chi2 per ndf for track\r
+    Int_t  nClustersTPC = track->GetTPCNcls();\r
+\r
+    if ( nClustersTPC > 5) {\r
+       return (track->GetTPCchi2()/Float_t(nClustersTPC - 5));\r
+    } else {\r
+       return (-1.);\r
+    }\r
+ }\r
+\r
+\r
+\r
+void AliAnalysisTaskESDfilter::Terminate(Option_t */*option*/)\r
+{\r
+// Terminate analysis\r
+//\r
+    if (fDebug > 1) printf("AnalysisESDfilter: Terminate() \n");\r
+}\r
+\r
+void  AliAnalysisTaskESDfilter::PrintMCInfo(AliStack *pStack,Int_t label){\r
+  if(!pStack)return;\r
+  label = TMath::Abs(label);\r
+  TParticle *part = pStack->Particle(label);\r
+  Printf("########################");\r
+  Printf("%s:%d %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,label,part->GetUniqueID(),part->GetPdgCode(),part->P());\r
+  part->Print();\r
+  TParticle* mother = part;\r
+  Int_t imo = part->GetFirstMother();\r
+  Int_t nprim = pStack->GetNprimary();\r
+  //  while((imo >= nprim) && (mother->GetUniqueID() == 4)) {\r
+  while((imo >= nprim)) {\r
+    mother =  pStack->Particle(imo);\r
+    Printf("Mother %s:%d Label %d UniqueID %d PDG %d P %3.3f",(char*)__FILE__,__LINE__,imo,mother->GetUniqueID(),mother->GetPdgCode(),mother->P());\r
+    mother->Print();\r
+    imo =  mother->GetFirstMother();\r
+  }\r
+  Printf("########################");\r
+}\r