]> git.uio.no Git - u/mrichter/AliRoot.git/blobdiff - SHUTTLE/AliShuttle.cxx
Typo corrected.
[u/mrichter/AliRoot.git] / SHUTTLE / AliShuttle.cxx
index afa94a777f5bb3594ee883093f9f418214a2ea9a..5a1cc05391960b5684b755ae4c0b0e74ea23ec9e 100644 (file)
 
 /*
 $Log$
+Revision 1.37  2007/04/10 16:53:14  jgrosseo
+redirecting sub detector stdout, stderr to sub detector log file
+
+Revision 1.35  2007/04/04 16:26:38  acolla
+1. Re-organization of function calls in TestPreprocessor to make it more meaningful.
+2. Added missing dependency in test preprocessors.
+3. in AliShuttle.cxx: processing time and memory consumption info on a single line.
+
+Revision 1.34  2007/04/04 10:33:36  jgrosseo
+1) Storing of files to the Grid is now done _after_ your preprocessors succeeded. This is transparent, which means that you can still use the same functions (Store, StoreReferenceData) to store files to the Grid. However, the Shuttle first stores them locally and transfers them after the preprocessor finished. The return code of these two functions has changed from UInt_t to Bool_t which gives you the success of the storing.
+In case of an error with the Grid, the Shuttle will retry the storing later, the preprocessor does not need to be run again.
+
+2) The meaning of the return code of the preprocessor has changed. 0 is now success and any other value means failure. This value is stored in the log and you can use it to keep details about the error condition.
+
+3) New function StoreReferenceFile to _directly_ store a file (without opening it) to the reference storage.
+
+4) The memory usage of the preprocessor is monitored. If it exceeds 2 GB it is terminated.
+
+5) New function AliPreprocessor::ProcessDCS(). If you do not need to have DCS data in all cases, you can skip the processing by implemting this function and returning kFALSE under certain conditions. E.g. if there is a certain run type.
+If you always need DCS data (like before), you do not need to implement it.
+
+6) The run type has been added to the monitoring page
+
+Revision 1.33  2007/04/03 13:56:01  acolla
+Grid Storage at the end of preprocessing. Added virtual method to disable DCS query according to the
+run type.
+
+Revision 1.32  2007/02/28 10:41:56  acolla
+Run type field added in SHUTTLE framework. Run type is read from "run type" logbook and retrieved by
+AliPreprocessor::GetRunType() function.
+Added some ldap definition files.
+
+Revision 1.30  2007/02/13 11:23:21  acolla
+Moved getters and setters of Shuttle's main OCDB/Reference, local
+OCDB/Reference, temp and log folders to AliShuttleInterface
+
+Revision 1.27  2007/01/30 17:52:42  jgrosseo
+adding monalisa monitoring
+
+Revision 1.26  2007/01/23 19:20:03  acolla
+Removed old ldif files, added TOF, MCH ldif files. Added some options in
+AliShuttleConfig::Print. Added in Ali Shuttle: SetShuttleTempDir and
+SetShuttleLogDir
+
+Revision 1.25  2007/01/15 19:13:52  acolla
+Moved some AliInfo to AliDebug in SendMail function
+
+Revision 1.21  2006/12/07 08:51:26  jgrosseo
+update (alberto):
+table, db names in ldap configuration
+added GRP preprocessor
+DCS data can also be retrieved by data point
+
+Revision 1.20  2006/11/16 16:16:48  jgrosseo
+introducing strict run ordering flag
+removed giving preprocessor name to preprocessor, they have to know their name themselves ;-)
+
 Revision 1.19  2006/11/06 14:23:04  jgrosseo
 major update (Alberto)
 o) reading of run parameters from the logbook
@@ -151,6 +208,13 @@ some docs added
 #include <TSQLResult.h>
 #include <TSQLRow.h>
 #include <TMutex.h>
+#include <TSystemDirectory.h>
+#include <TSystemFile.h>
+#include <TFileMerger.h>
+#include <TGrid.h>
+#include <TGridResult.h>
+
+#include <TMonaLisaWriter.h>
 
 #include <fstream>
 
@@ -159,16 +223,6 @@ some docs added
 
 ClassImp(AliShuttle)
 
-TString AliShuttle::fgkMainCDB("alien://folder=ShuttleCDB");
-TString AliShuttle::fgkLocalCDB("local://LocalShuttleCDB");
-TString AliShuttle::fgkMainRefStorage("alien://folder=ShuttleReference");
-TString AliShuttle::fgkLocalRefStorage("local://LocalReferenceStorage");
-
-Bool_t AliShuttle::fgkProcessDCS(kTRUE); 
-
-const char* AliShuttle::fgkShuttleTempDir = gSystem->ExpandPathName("$ALICE_ROOT/SHUTTLE/temp");
-const char* AliShuttle::fgkShuttleLogDir = gSystem->ExpandPathName("$ALICE_ROOT/SHUTTLE/log");
-
 //______________________________________________________________________________________________
 AliShuttle::AliShuttle(const AliShuttleConfig* config,
                UInt_t timeout, Int_t retries):
@@ -178,10 +232,13 @@ fPreprocessorMap(),
 fLogbookEntry(0),
 fCurrentDetector(),
 fStatusEntry(0),
-fGridError(kFALSE),
 fMonitoringMutex(0),
 fLastActionTime(0),
-fLastAction()
+fLastAction(),
+fMonaLisa(0),
+fTestMode(kNone),
+fReadTestMode(kFALSE),
+fOutputRedirected(kFALSE)
 {
        //
        // config: AliShuttleConfig used
@@ -193,7 +250,7 @@ fLastAction()
        for(int iSys=0;iSys<4;iSys++) {
                fServer[iSys]=0;
                if (iSys < 3)
-                       fFESlist[iSys].SetOwner(kTRUE);
+                       fFXSlist[iSys].SetOwner(kTRUE);
        }
        fPreprocessorMap.SetOwner(kTRUE);
 
@@ -206,7 +263,9 @@ fLastAction()
 //______________________________________________________________________________________________
 AliShuttle::~AliShuttle()
 {
-// destructor
+       //
+       // destructor
+       //
 
        fPreprocessorMap.DeleteAll();
        for(int iSys=0;iSys<4;iSys++)
@@ -250,56 +309,59 @@ void AliShuttle::RegisterPreprocessor(AliPreprocessor* preprocessor)
        fPreprocessorMap.Add(new TObjString(detName), preprocessor);
 }
 //______________________________________________________________________________________________
-UInt_t AliShuttle::Store(const AliCDBPath& path, TObject* object,
+Bool_t AliShuttle::Store(const AliCDBPath& path, TObject* object,
                AliCDBMetaData* metaData, Int_t validityStart, Bool_t validityInfinite)
 {
-  // Stores a CDB object in the storage for offline reconstruction. Objects that are not needed for
-  // offline reconstruction, but should be stored anyway (e.g. for debugging) should NOT be stored
-  // using this function. Use StoreReferenceData instead!
-  // It calls WriteToCDB function which perform actual storage
-
-       return WriteToCDB(fgkMainCDB, fgkLocalCDB, path, object,
-                               metaData, validityStart, validityInfinite);
+       // Stores a CDB object in the storage for offline reconstruction. Objects that are not needed for
+       // offline reconstruction, but should be stored anyway (e.g. for debugging) should NOT be stored
+       // using this function. Use StoreReferenceData instead!
+       // It calls StoreLocally function which temporarily stores the data locally; when the preprocessor
+       // finishes the data are transferred to the main storage (Grid).
 
+       return StoreLocally(fgkLocalCDB, path, object, metaData, validityStart, validityInfinite);
 }
 
 //______________________________________________________________________________________________
-UInt_t AliShuttle::StoreReferenceData(const AliCDBPath& path, TObject* object, AliCDBMetaData* metaData)
+Bool_t AliShuttle::StoreReferenceData(const AliCDBPath& path, TObject* object, AliCDBMetaData* metaData)
 {
-  // Stores a CDB object in the storage for reference data. This objects will not be available during
-  // offline reconstrunction. Use this function for reference data only!
-  // It calls WriteToCDB function which perform actual storage
-
-       return WriteToCDB(fgkMainRefStorage, fgkLocalRefStorage, path, object, metaData);
+       // Stores a CDB object in the storage for reference data. This objects will not be available during
+       // offline reconstrunction. Use this function for reference data only!
+       // It calls StoreLocally function which temporarily stores the data locally; when the preprocessor
+       // finishes the data are transferred to the main storage (Grid).
 
+       return StoreLocally(fgkLocalRefStorage, path, object, metaData);
 }
 
 //______________________________________________________________________________________________
-UInt_t AliShuttle::WriteToCDB(const char* mainUri, const char* localUri,
+Bool_t AliShuttle::StoreLocally(const TString& localUri,
                        const AliCDBPath& path, TObject* object, AliCDBMetaData* metaData,
                        Int_t validityStart, Bool_t validityInfinite)
 {
-  // write object into the CDB. Parameters are passed by Store and StoreReferenceData functions.
-  // The parameters are:
-  //   1) Uri of the main storage (Grid)
-  //   2) Uri of the backup storage (Local)
-  //   3) the object's path.
-  //   4) the object to be stored
-  //   5) the metaData to be associated with the object
-  //   6) the validity start run number w.r.t. the current run,
-  //      if the data is valid only for this run leave the default 0
-  //   7) specifies if the calibration data is valid for infinity (this means until updated),
-  //      typical for calibration runs, the default is kFALSE
-  //
-  // returns 0 if fail
-  //        1 if stored in main (Grid) storage
-  //        2 if stored in backup (Local) storage
-
-       const char* cdbType = (mainUri == fgkMainCDB) ? "CDB" : "Reference";
+       // Store object temporarily in local storage. Parameters are passed by Store and StoreReferenceData functions.
+       // when the preprocessor finishes the data are transferred to the main storage (Grid).
+       // The parameters are:
+       //   1) Uri of the backup storage (Local)
+       //   2) the object's path.
+       //   3) the object to be stored
+       //   4) the metaData to be associated with the object
+       //   5) the validity start run number w.r.t. the current run,
+       //      if the data is valid only for this run leave the default 0
+       //   6) specifies if the calibration data is valid for infinity (this means until updated),
+       //      typical for calibration runs, the default is kFALSE
+       //
+       // returns 0 if fail, 1 otherwise
+
+       if (fTestMode & kErrorStorage)
+       {
+               Log(fCurrentDetector, "StoreLocally - In TESTMODE - Simulating error while storing locally");
+               return kFALSE;
+       }
+       
+       const char* cdbType = (localUri == fgkLocalCDB) ? "CDB" : "Reference";
 
        Int_t firstRun = GetCurrentRun() - validityStart;
        if(firstRun < 0) {
-               AliError("First valid run happens to be less than 0! Setting it to 0.");
+               AliWarning("First valid run happens to be less than 0! Setting it to 0.");
                firstRun=0;
        }
 
@@ -310,57 +372,406 @@ UInt_t AliShuttle::WriteToCDB(const char* mainUri, const char* localUri,
                lastRun = GetCurrentRun();
        }
 
-       AliCDBId id(path, firstRun, lastRun, -1, -1);
+       // Version is set to current run, it will be used later to transfer data to Grid
+       AliCDBId id(path, firstRun, lastRun, GetCurrentRun(), -1);
 
        if(! dynamic_cast<TObjString*> (metaData->GetProperty("RunUsed(TObjString)"))){
                TObjString runUsed = Form("%d", GetCurrentRun());
-               metaData->SetProperty("RunUsed(TObjString)",&runUsed);
+               metaData->SetProperty("RunUsed(TObjString)", runUsed.Clone());
        }
 
-       UInt_t result = 0;
+       Bool_t result = kFALSE;
 
-       if (!(AliCDBManager::Instance()->GetStorage(mainUri))) {
-               AliError(Form("WriteToCDB - Cannot activate main %s storage", cdbType));
+       if (!(AliCDBManager::Instance()->GetStorage(localUri))) {
+               Log("SHUTTLE", Form("StoreLocally - Cannot activate local %s storage", cdbType));
        } else {
-               result = (UInt_t) AliCDBManager::Instance()->GetStorage(mainUri)
+               result = AliCDBManager::Instance()->GetStorage(localUri)
                                        ->Put(object, id, metaData);
        }
 
        if(!result) {
 
-               Log(fCurrentDetector,
-                       Form("WriteToCDB - Problem with main %s storage. Putting <%s> into backup storage",
-                               cdbType, path.GetPath().Data()));
+               Log(fCurrentDetector, Form("StoreLocally - Can't store object <%s>!", id.ToString().Data()));
+       }
 
-               // Set Grid version to current run number, to ease retrieval later
-               id.SetVersion(GetCurrentRun());
+       return result;
+}
 
-               result = AliCDBManager::Instance()->GetStorage(localUri)
-                                       ->Put(object, id, metaData);
+//______________________________________________________________________________________________
+Bool_t AliShuttle::StoreOCDB()
+{
+       //
+       // Called when preprocessor ends successfully or when previous storage attempt failed (kStoreError status)
+       // Calls underlying StoreOCDB(const char*) function twice, for OCDB and Reference storage.
+       // Then calls StoreRefFilesToGrid to store reference files. 
+       //
+       
+       if (fTestMode & kErrorGrid)
+       {
+               Log("SHUTTLE", "StoreOCDB - In TESTMODE - Simulating error while storing in the Grid");
+               Log(fCurrentDetector, "StoreOCDB - In TESTMODE - Simulating error while storing in the Grid");
+               return kFALSE;
+       }
+       
+       AliInfo("Storing OCDB data ...");
+       Bool_t resultCDB = StoreOCDB(fgkMainCDB);
+
+       AliInfo("Storing reference data ...");
+       Bool_t resultRef = StoreOCDB(fgkMainRefStorage);
+       
+       AliInfo("Storing reference files ...");
+       Bool_t resultRefFiles = StoreRefFilesToGrid();
+       
+       return resultCDB && resultRef && resultRefFiles;
+}
+
+//______________________________________________________________________________________________
+Bool_t AliShuttle::StoreOCDB(const TString& gridURI)
+{
+       //
+       // Called by StoreOCDB(), performs actual storage to the main OCDB and reference storages (Grid)
+       //
+
+       TObjArray* gridIds=0;
+
+       Bool_t result = kTRUE;
+
+       const char* type = 0;
+       TString localURI;
+       if(gridURI == fgkMainCDB) {
+               type = "OCDB";
+               localURI = fgkLocalCDB;
+       } else if(gridURI == fgkMainRefStorage) {
+               type = "reference";
+               localURI = fgkLocalRefStorage;
+       } else {
+               AliError(Form("Invalid storage URI: %s", gridURI.Data()));
+               return kFALSE;
+       }
+
+       AliCDBManager* man = AliCDBManager::Instance();
+
+       AliCDBStorage *gridSto = man->GetStorage(gridURI);
+       if(!gridSto) {
+               Log("SHUTTLE",
+                       Form("StoreOCDB - cannot activate main %s storage", type));
+               return kFALSE;
+       }
+
+       gridIds = gridSto->GetQueryCDBList();
+
+       // get objects previously stored in local CDB
+       AliCDBStorage *localSto = man->GetStorage(localURI);
+       if(!localSto) {
+               Log("SHUTTLE",
+                       Form("StoreOCDB - cannot activate local %s storage", type));
+               return kFALSE;
+       }
+       AliCDBPath aPath(GetOfflineDetName(fCurrentDetector.Data()),"*","*");
+       // Local objects were stored with current run as Grid version!
+       TList* localEntries = localSto->GetAll(aPath.GetPath(), GetCurrentRun(), GetCurrentRun());
+       localEntries->SetOwner(1);
+
+       // loop on local stored objects
+       TIter localIter(localEntries);
+       AliCDBEntry *aLocEntry = 0;
+       while((aLocEntry = dynamic_cast<AliCDBEntry*> (localIter.Next()))){
+               aLocEntry->SetOwner(1);
+               AliCDBId aLocId = aLocEntry->GetId();
+               aLocEntry->SetVersion(-1);
+               aLocEntry->SetSubVersion(-1);
 
-               if(result) {
-                       result = 2;
-                       fGridError = kTRUE;
-               }else{
-                       Log(fCurrentDetector, "WriteToCDB - Can't store data!");
+               // If local object is valid up to infinity we store it only if it is
+               // the first unprocessed run!
+               if (aLocId.GetLastRun() == AliCDBRunRange::Infinity() &&
+                       !fFirstUnprocessed[GetDetPos(fCurrentDetector)])
+               {
+                       Log("SHUTTLE", Form("StoreOCDB - %s: object %s has validity infinite but "
+                                               "there are previous unprocessed runs!",
+                                               fCurrentDetector.Data(), aLocId.GetPath().Data()));
+                       continue;
+               }
+
+               // loop on Grid valid Id's
+               Bool_t store = kTRUE;
+               TIter gridIter(gridIds);
+               AliCDBId* aGridId = 0;
+               while((aGridId = dynamic_cast<AliCDBId*> (gridIter.Next()))){
+                       if(aGridId->GetPath() != aLocId.GetPath()) continue;
+                       // skip all objects valid up to infinity
+                       if(aGridId->GetLastRun() == AliCDBRunRange::Infinity()) continue;
+                       // if we get here, it means there's already some more recent object stored on Grid!
+                       store = kFALSE;
+                       break;
+               }
+
+               // If we get here, the file can be stored!
+               Bool_t storeOk = gridSto->Put(aLocEntry);
+               if(!store || storeOk){
+
+                       if (!store)
+                       {
+                               Log(fCurrentDetector.Data(),
+                                       Form("StoreOCDB - A more recent object already exists in %s storage: <%s>",
+                                               type, aGridId->ToString().Data()));
+                       } else {
+                               Log("SHUTTLE",
+                                       Form("StoreOCDB - Object <%s> successfully put into %s storage",
+                                               aLocId.ToString().Data(), type));
+                       }
+
+                       // removing local filename...
+                       TString filename;
+                       localSto->IdToFilename(aLocId, filename);
+                       AliInfo(Form("Removing local file %s", filename.Data()));
+                       RemoveFile(filename.Data());
+                       continue;
+               } else  {
+                       Log("SHUTTLE",
+                               Form("StoreOCDB - Grid %s storage of object <%s> failed",
+                                       type, aLocId.ToString().Data()));
+                       result = kFALSE;
                }
        }
+       localEntries->Clear();
 
        return result;
+}
+
+//______________________________________________________________________________________________
+Bool_t AliShuttle::StoreReferenceFile(const char* detector, const char* localFile, const char* gridFileName)
+{
+       //
+       // Stores reference file directly (without opening it). This function stores the file locally.
+       //
+       // The file is stored under the following location: 
+       // <base folder of local reference storage>/<DET>/<RUN#>_<gridFileName>
+       // where <gridFileName> is the second parameter given to the function
+       // 
+       
+       if (fTestMode & kErrorStorage)
+       {
+               Log(fCurrentDetector, "StoreReferenceFile - In TESTMODE - Simulating error while storing locally");
+               return kFALSE;
+       }
+       
+       AliCDBManager* man = AliCDBManager::Instance();
+       AliCDBStorage* sto = man->GetStorage(fgkLocalRefStorage);
+       
+       TString localBaseFolder = sto->GetBaseFolder();
+       
+       TString targetDir;
+       targetDir.Form("%s/%s", localBaseFolder.Data(), detector);
+       
+       TString target;
+       target.Form("%s/%d_%s", targetDir.Data(), GetCurrentRun(), gridFileName);
+       
+       Int_t result = gSystem->GetPathInfo(targetDir, 0, (Long64_t*) 0, 0, 0);
+       if (result)
+       {
+               result = gSystem->mkdir(targetDir, kTRUE);
+               if (result != 0)
+               {
+                       Log("SHUTTLE", Form("StoreReferenceFile - Error creating base directory %s", targetDir.Data()));
+                       return kFALSE;
+               }
+       }
+               
+       result = gSystem->CopyFile(localFile, target);
+
+       if (result == 0)
+       {
+               Log("SHUTTLE", Form("StoreReferenceFile - Stored file %s locally to %s", localFile, target.Data()));
+               return kTRUE;
+       }
+       else
+       {
+               Log("SHUTTLE", Form("StoreReferenceFile - Storing file %s locally to %s failed", localFile, target.Data()));
+               return kFALSE;
+       }       
+}
+
+//______________________________________________________________________________________________
+Bool_t AliShuttle::StoreRefFilesToGrid()
+{
+       //
+       // Transfers the reference file to the Grid.
+       //
+       // The file is stored under the following location: 
+       // <base folder of reference storage>/<DET>/<RUN#>_<gridFileName>
+       // where <gridFileName> is the second parameter given to the function
+       //      
+       
+       AliCDBManager* man = AliCDBManager::Instance();
+       AliCDBStorage* sto = man->GetStorage(fgkLocalRefStorage);
+       if (!sto)
+               return kFALSE;
+       TString localBaseFolder = sto->GetBaseFolder();
+               
+       TString dir;
+       dir.Form("%s/%s", localBaseFolder.Data(), GetOfflineDetName(fCurrentDetector));
+       
+       AliCDBStorage* gridSto = man->GetStorage(fgkMainRefStorage);
+       if (!gridSto)
+               return kFALSE;
+       TString gridBaseFolder = gridSto->GetBaseFolder();
+       TString alienDir;
+       alienDir.Form("%s%s", gridBaseFolder.Data(), GetOfflineDetName(fCurrentDetector));
+       
+       if (!gGrid) 
+               return kFALSE;
+       
+       TString begin;
+       begin.Form("%d_", GetCurrentRun());
+       
+       TSystemDirectory* baseDir = new TSystemDirectory("/", dir);
+       if (!baseDir)
+               return kTRUE;
+               
+       TList* dirList            = baseDir->GetListOfFiles();
+       if (!dirList)
+       {
+               delete baseDir;
+               return kTRUE;
+       }
+               
+       Int_t nDirs               = dirList->GetEntries();
+       
+       Bool_t success = kTRUE;
+       Bool_t first = kTRUE;
+       
+       for (Int_t iDir=0; iDir<nDirs; ++iDir)
+       {
+               TSystemFile* entry = dynamic_cast<TSystemFile*> (dirList->At(iDir));
+               if (!entry)
+                       continue;
+                       
+               if (entry->IsDirectory())
+                       continue;
+                       
+               TString fileName(entry->GetName());
+               if (!fileName.BeginsWith(begin))
+                       continue;
+                       
+               if (first)
+               {
+                       first = kFALSE;
+                       // check that DET folder exists, otherwise create it
+                       TGridResult* result = gGrid->Ls(alienDir.Data(), "a");
+                       
+                       if (!result)
+                               return kFALSE;
+                       
+                       if (!result->GetFileName(0)) 
+                       {
+                               if (!gGrid->Mkdir(alienDir.Data(),"",0))
+                               {
+                                       Log("SHUTTLE", Form("StoreRefFilesToGrid - Cannot create directory %s",
+                                                       alienDir.Data()));
+                                       delete baseDir;
+                                       return kFALSE;
+                               }
+                               
+                       }
+               }
+                       
+               TString fullLocalPath;
+               fullLocalPath.Form("%s/%s", dir.Data(), fileName.Data());
+               
+               TString fullGridPath;
+               fullGridPath.Form("alien://%s/%s", alienDir.Data(), fileName.Data());
+
+               Log("SHUTTLE", Form("StoreRefFilesToGrid - Copying local file %s to %s", fullLocalPath.Data(), fullGridPath.Data()));
+               
+               TFileMerger fileMerger;
+               Bool_t result = fileMerger.Cp(fullLocalPath, fullGridPath);
+               
+               if (result)
+               {
+                       Log("SHUTTLE", Form("StoreRefFilesToGrid - Copying local file %s to %s succeeded", fullLocalPath.Data(), fullGridPath.Data()));
+                       RemoveFile(fullLocalPath);
+               }
+               else
+               {
+                       Log("SHUTTLE", Form("StoreRefFilesToGrid - Copying local file %s to %s failed", fullLocalPath.Data(), fullGridPath.Data()));
+                       success = kFALSE;
+               }
+       }
+       
+       delete baseDir;
+       
+       return success;
+}
+
+//______________________________________________________________________________________________
+void AliShuttle::CleanLocalStorage(const TString& uri)
+{
+       //
+       // Called in case the preprocessor is declared failed. Remove remaining objects from the local storages.
+       //
+
+       const char* type = 0;
+       if(uri == fgkLocalCDB) {
+               type = "OCDB";
+       } else if(uri == fgkLocalRefStorage) {
+               type = "reference";
+       } else {
+               AliError(Form("Invalid storage URI: %s", uri.Data()));
+               return;
+       }
+
+       AliCDBManager* man = AliCDBManager::Instance();
+
+       // open local storage
+       AliCDBStorage *localSto = man->GetStorage(uri);
+       if(!localSto) {
+               Log("SHUTTLE",
+                       Form("CleanLocalStorage - cannot activate local %s storage", type));
+               return;
+       }
+
+       TString filename(Form("%s/%s/*/Run*_v%d_s*.root",
+               localSto->GetBaseFolder().Data(), fCurrentDetector.Data(), GetCurrentRun()));
+
+       AliInfo(Form("filename = %s", filename.Data()));
+
+       AliInfo(Form("Removing remaining local files from run %d and detector %s ...",
+               GetCurrentRun(), fCurrentDetector.Data()));
+
+       RemoveFile(filename.Data());
+
+}
+
+//______________________________________________________________________________________________
+void AliShuttle::RemoveFile(const char* filename)
+{
+       //
+       // removes local file
+       //
 
+       TString command(Form("rm -f %s", filename));
+
+       Int_t result = gSystem->Exec(command.Data());
+       if(result != 0)
+       {
+               Log("SHUTTLE", Form("RemoveFile - %s: Cannot remove file %s!",
+                       fCurrentDetector.Data(), filename));
+       }
 }
 
 //______________________________________________________________________________________________
 AliShuttleStatus* AliShuttle::ReadShuttleStatus()
 {
-// Reads the AliShuttleStatus from the CDB
+       //
+       // Reads the AliShuttleStatus from the CDB
+       //
 
        if (fStatusEntry){
                delete fStatusEntry;
                fStatusEntry = 0;
        }
 
-       fStatusEntry = AliCDBManager::Instance()->GetStorage(AliShuttle::GetLocalCDB())
+       fStatusEntry = AliCDBManager::Instance()->GetStorage(GetLocalCDB())
                ->Get(Form("/SHUTTLE/STATUS/%s", fCurrentDetector.Data()), GetCurrentRun());
 
        if (!fStatusEntry) return 0;
@@ -378,7 +789,9 @@ AliShuttleStatus* AliShuttle::ReadShuttleStatus()
 //______________________________________________________________________________________________
 Bool_t AliShuttle::WriteShuttleStatus(AliShuttleStatus* status)
 {
-// writes the status for one subdetector
+       //
+       // writes the status for one subdetector
+       //
 
        if (fStatusEntry){
                delete fStatusEntry;
@@ -395,9 +808,12 @@ Bool_t AliShuttle::WriteShuttleStatus(AliShuttleStatus* status)
        UInt_t result = AliCDBManager::Instance()->GetStorage(fgkLocalCDB)->Put(fStatusEntry);
 
        if (!result) {
-               AliError(Form("WriteShuttleStatus for %s, run %d failed", fCurrentDetector.Data(), run));
+               Log("SHUTTLE", Form("WriteShuttleStatus - Failed for %s, run %d",
+                                               fCurrentDetector.Data(), run));
                return kFALSE;
        }
+       
+       SendMLInfo();
 
        return kTRUE;
 }
@@ -405,7 +821,9 @@ Bool_t AliShuttle::WriteShuttleStatus(AliShuttleStatus* status)
 //______________________________________________________________________________________________
 void AliShuttle::UpdateShuttleStatus(AliShuttleStatus::Status newStatus, Bool_t increaseCount)
 {
-  // changes the AliShuttleStatus for the given detector and run to the given status
+       //
+       // changes the AliShuttleStatus for the given detector and run to the given status
+       //
 
        if (!fStatusEntry){
                AliError("UNEXPECTED: fStatusEntry empty");
@@ -415,13 +833,13 @@ void AliShuttle::UpdateShuttleStatus(AliShuttleStatus::Status newStatus, Bool_t
        AliShuttleStatus* status = dynamic_cast<AliShuttleStatus*> (fStatusEntry->GetObject());
 
        if (!status){
-               AliError("UNEXPECTED: status could not be read from current CDB entry");
+               Log("SHUTTLE", "UNEXPECTED: status could not be read from current CDB entry");
                return;
        }
 
-       TString actionStr = Form("UpdateShuttleStatus - %s: Changing state from %s to %s", 
+       TString actionStr = Form("UpdateShuttleStatus - %s: Changing state from %s to %s",
                                fCurrentDetector.Data(),
-                               status->GetStatusName(), 
+                               status->GetStatusName(),
                                status->GetStatusName(newStatus));
        Log("SHUTTLE", actionStr);
        SetLastAction(actionStr);
@@ -430,25 +848,62 @@ void AliShuttle::UpdateShuttleStatus(AliShuttleStatus::Status newStatus, Bool_t
        if (increaseCount) status->IncreaseCount();
 
        AliCDBManager::Instance()->GetStorage(fgkLocalCDB)->Put(fStatusEntry);
+
+       SendMLInfo();
 }
+
 //______________________________________________________________________________________________
-Bool_t AliShuttle::ContinueProcessing()
+void AliShuttle::SendMLInfo()
 {
-// this function reads the AliShuttleStatus information from CDB and
-// checks if the processing should be continued
-// if yes it returns kTRUE and updates the AliShuttleStatus with nextStatus
-
-       AliShuttleLogbookEntry::Status entryStatus =
-               fLogbookEntry->GetDetectorStatus(fCurrentDetector);
-
-       if(entryStatus != AliShuttleLogbookEntry::kUnprocessed) {
-               Log("SHUTTLE", Form("ContinueProcessing - %s is %s",
-                               fCurrentDetector.Data(),
-                               fLogbookEntry->GetDetectorStatusName(entryStatus)));
-               return kFALSE;
+       //
+       // sends ML information about the current status of the current detector being processed
+       //
+       
+       AliShuttleStatus* status = dynamic_cast<AliShuttleStatus*> (fStatusEntry->GetObject());
+       
+       if (!status){
+               Log("SHUTTLE", "SendMLInfo - UNEXPECTED: status could not be read from current CDB entry");
+               return;
        }
+       
+       TMonaLisaText  mlStatus(Form("%s_status", fCurrentDetector.Data()), status->GetStatusName());
+       TMonaLisaValue mlRetryCount(Form("%s_count", fCurrentDetector.Data()), status->GetCount());
 
-       // if we get here, according to Shuttle logbook subdetector is in UNPROCESSED state
+       TList mlList;
+       mlList.Add(&mlStatus);
+       mlList.Add(&mlRetryCount);
+
+       fMonaLisa->SendParameters(&mlList);
+}
+
+//______________________________________________________________________________________________
+Bool_t AliShuttle::ContinueProcessing()
+{
+       // this function reads the AliShuttleStatus information from CDB and
+       // checks if the processing should be continued
+       // if yes it returns kTRUE and updates the AliShuttleStatus with nextStatus
+
+       if (!fConfig->HostProcessDetector(fCurrentDetector)) return kFALSE;
+
+       AliPreprocessor* aPreprocessor =
+               dynamic_cast<AliPreprocessor*> (fPreprocessorMap.GetValue(fCurrentDetector));
+       if (!aPreprocessor)
+       {
+               AliInfo(Form("%s: no preprocessor registered", fCurrentDetector.Data()));
+               return kFALSE;
+       }
+
+       AliShuttleLogbookEntry::Status entryStatus =
+               fLogbookEntry->GetDetectorStatus(fCurrentDetector);
+
+       if(entryStatus != AliShuttleLogbookEntry::kUnprocessed) {
+               AliInfo(Form("ContinueProcessing - %s is %s",
+                               fCurrentDetector.Data(),
+                               fLogbookEntry->GetDetectorStatusName(entryStatus)));
+               return kFALSE;
+       }
+
+       // if we get here, according to Shuttle logbook subdetector is in UNPROCESSED state
 
        // check if current run is first unprocessed run for current detector
        if (fConfig->StrictRunOrder(fCurrentDetector) &&
@@ -479,41 +934,62 @@ Bool_t AliShuttle::ContinueProcessing()
                return kFALSE;
        }
 
-       if (status->GetStatus() == AliShuttleStatus::kStoreFailed) {
+       if (status->GetStatus() == AliShuttleStatus::kStoreError) {
                Log("SHUTTLE",
                        Form("ContinueProcessing - %s: Grid storage of one or more objects failed. Trying again now",
                                fCurrentDetector.Data()));
-               if(TryToStoreAgain()){
-                       Log(fCurrentDetector.Data(), "ContinueProcessing - All objects successfully stored into OCDB");
+               UpdateShuttleStatus(AliShuttleStatus::kStoreStarted);
+               if (StoreOCDB()){
+                       Log("SHUTTLE", Form("ContinueProcessing - %s: all objects successfully stored into main storage",
+                               fCurrentDetector.Data()));
                        UpdateShuttleStatus(AliShuttleStatus::kDone);
                        UpdateShuttleLogbook(fCurrentDetector.Data(), "DONE");
                } else {
                        Log("SHUTTLE",
                                Form("ContinueProcessing - %s: Grid storage failed again",
                                        fCurrentDetector.Data()));
+                       UpdateShuttleStatus(AliShuttleStatus::kStoreError);
                }
                return kFALSE;
        }
 
        // if we get here, there is a restart
+       Bool_t cont = kFALSE;
 
        // abort conditions
        if (status->GetCount() >= fConfig->GetMaxRetries()) {
-               Log("SHUTTLE",
-                       Form("ContinueProcessing - %s failed %d times in status %s - Updating Shuttle Logbook",
-                               fCurrentDetector.Data(),
+               Log("SHUTTLE", Form("ContinueProcessing - %s failed %d times in status %s - "
+                               "Updating Shuttle Logbook", fCurrentDetector.Data(),
                                status->GetCount(), status->GetStatusName()));
                UpdateShuttleLogbook(fCurrentDetector.Data(), "FAILED");
-               return kFALSE;
-       }
-
-       Log("SHUTTLE", Form("ContinueProcessing - %s: restarting. Aborted before with %s. Retry number %d.",
-                       fCurrentDetector.Data(),
-                       status->GetStatusName(), status->GetCount()));
+               UpdateShuttleStatus(AliShuttleStatus::kFailed);
+
+               // there may still be objects in local OCDB and reference storage
+               // and FXS databases may be not updated: do it now!
+               
+               // TODO Currently disabled, we want to keep files in case of failure!
+               // CleanLocalStorage(fgkLocalCDB);
+               // CleanLocalStorage(fgkLocalRefStorage);
+               // UpdateTableFailCase();
+               
+               // Send mail to detector expert!
+               AliInfo(Form("Sending mail to %s expert...", fCurrentDetector.Data()));
+               if (!SendMail())
+                       Log("SHUTTLE", Form("ContinueProcessing - Could not send mail to %s expert",
+                                       fCurrentDetector.Data()));
 
-       UpdateShuttleStatus(AliShuttleStatus::kStarted, kTRUE);
+       } else {
+               Log("SHUTTLE", Form("ContinueProcessing - %s: restarting. "
+                               "Aborted before with %s. Retry number %d.", fCurrentDetector.Data(),
+                               status->GetStatusName(), status->GetCount()));
+               Bool_t increaseCount = kTRUE;
+               if (status->GetStatus() == AliShuttleStatus::kDCSError || status->GetStatus() == AliShuttleStatus::kDCSStarted)
+                       increaseCount = kFALSE;
+               UpdateShuttleStatus(AliShuttleStatus::kStarted, increaseCount);
+               cont = kTRUE;
+       }
 
-       return kTRUE;
+       return cont;
 }
 
 //______________________________________________________________________________________________
@@ -526,26 +1002,75 @@ Bool_t AliShuttle::Process(AliShuttleLogbookEntry* entry)
        // Returns kFALSE in case of error occured and kTRUE otherwise
        //
 
-       if(!entry) return kFALSE;
+       if (!entry) return kFALSE;
 
        fLogbookEntry = entry;
 
-       if(fLogbookEntry->IsDone()){
+       AliInfo(Form("\n\n \t\t\t^*^*^*^*^*^*^*^*^*^*^*^* run %d: START ^*^*^*^*^*^*^*^*^*^*^*^* \n",
+                                       GetCurrentRun()));
+
+       // create ML instance that monitors this run
+       fMonaLisa = new TMonaLisaWriter(Form("%d", GetCurrentRun()), "SHUTTLE", "aliendb1.cern.ch");
+       // disable monitoring of other parameters that come e.g. from TFile
+       gMonitoringWriter = 0;
+
+       // Send the information to ML
+       TMonaLisaText  mlStatus("SHUTTLE_status", "Processing");
+       TMonaLisaText  mlRunType("SHUTTLE_runtype", Form("%s (%s)", entry->GetRunType(), entry->GetRunParameter("log")));
+
+       TList mlList;
+       mlList.Add(&mlStatus);
+       mlList.Add(&mlRunType);
+
+       fMonaLisa->SendParameters(&mlList);
+
+       if (fLogbookEntry->IsDone())
+       {
                Log("SHUTTLE","Process - Shuttle is already DONE. Updating logbook");
                UpdateShuttleLogbook("shuttle_done");
                fLogbookEntry = 0;
                return kTRUE;
        }
 
-
-       AliInfo(Form("\n\n \t\t\t^*^*^*^*^*^*^*^*^*^*^*^* run %d: START ^*^*^*^*^*^*^*^*^*^*^*^* \n",
-                                       GetCurrentRun()));
-
+       // read test mode if flag is set
+       if (fReadTestMode)
+       {
+               fTestMode = kNone;
+               TString logEntry(entry->GetRunParameter("log"));
+               //printf("log entry = %s\n", logEntry.Data());
+               TString searchStr("Testmode: ");
+               Int_t pos = logEntry.Index(searchStr.Data());
+               //printf("%d\n", pos);
+               if (pos >= 0)
+               {
+                       TSubString subStr = logEntry(pos + searchStr.Length(), logEntry.Length());
+                       //printf("%s\n", subStr.String().Data());
+                       TString newStr(subStr.Data());
+                       TObjArray* token = newStr.Tokenize(' ');
+                       if (token)
+                       {
+                               //token->Print();
+                               TObjString* tmpStr = dynamic_cast<TObjString*> (token->First());
+                               if (tmpStr)
+                               {
+                                       Int_t testMode = tmpStr->String().Atoi();
+                                       if (testMode > 0)
+                                       {
+                                               Log("SHUTTLE", Form("Enabling test mode %d", testMode));
+                                               SetTestMode((TestMode) testMode);
+                                       }
+                               }
+                               delete token;          
+                       }
+               }
+       }
+       
+       Log("SHUTTLE", Form("The test mode flag is %d", (Int_t) fTestMode));
+       
        fLogbookEntry->Print("all");
 
        // Initialization
        Bool_t hasError = kFALSE;
-       for(Int_t iSys=0;iSys<3;iSys++) fFESCalled[iSys]=kFALSE;
 
        AliCDBStorage *mainCDBSto = AliCDBManager::Instance()->GetStorage(fgkMainCDB);
        if(mainCDBSto) mainCDBSto->QueryCDB(GetCurrentRun());
@@ -560,22 +1085,14 @@ Bool_t AliShuttle::Process(AliShuttleLogbookEntry* entry)
        {
                fCurrentDetector = aDetector->String();
 
-               if (!fConfig->HostProcessDetector(fCurrentDetector)) continue;
-
-               AliPreprocessor* aPreprocessor =
-                       dynamic_cast<AliPreprocessor*> (fPreprocessorMap.GetValue(fCurrentDetector));
-               if (!aPreprocessor)
-               {
-                       Log("SHUTTLE",Form("Process - %s: no preprocessor registered. Skipping",
-                                                       fCurrentDetector.Data()));
-                       continue;
-               }
-
                if (ContinueProcessing() == kFALSE) continue;
 
                AliInfo(Form("\n\n \t\t\t****** run %d - %s: START  ******",
                                                GetCurrentRun(), aDetector->GetName()));
 
+               for(Int_t iSys=0;iSys<3;iSys++) fFXSCalled[iSys]=kFALSE;
+
+               Log(fCurrentDetector.Data(), "Starting processing");
 
                Int_t pid = fork();
 
@@ -598,21 +1115,69 @@ Bool_t AliShuttle::Process(AliShuttleLogbookEntry* entry)
 
                                if (expiredTime > fConfig->GetPPTimeOut())
                                {
-                                       Log("SHUTTLE", Form("Process time out. Run time: %d seconds. Killing...",
-                                                               expiredTime));
+                                       TString tmp;
+                                       tmp.Form("Process of %s time out. Run time: %d seconds. Killing...",
+                                                               fCurrentDetector.Data(), expiredTime);
+                                       Log("SHUTTLE", tmp);
+                                       Log(fCurrentDetector, tmp);
 
                                        kill(pid, 9);
 
+                                       UpdateShuttleStatus(AliShuttleStatus::kPPTimeOut);
                                        hasError = kTRUE;
 
                                        gSystem->Sleep(1000);
                                }
                                else
                                {
-                                       if (expiredTime % 60 == 0)
-                                       Log("SHUTTLE", Form("Checked process. Run time: %d seconds.",
-                                                               expiredTime));
                                        gSystem->Sleep(1000);
+                                       
+                                       TString checkStr;
+                                       checkStr.Form("ps -o vsize --pid %d | tail -n 1", pid);
+                                       FILE* pipe = gSystem->OpenPipe(checkStr, "r");
+                                       if (!pipe)
+                                       {
+                                               Log("SHUTTLE", Form("Error: Could not open pipe to %s", checkStr.Data()));
+                                               continue;
+                                       }
+                                               
+                                       char buffer[100];
+                                       if (!fgets(buffer, 100, pipe))
+                                       {
+                                               Log("SHUTTLE", "Error: ps did not return anything");
+                                               gSystem->ClosePipe(pipe);
+                                               continue;
+                                       }
+                                       gSystem->ClosePipe(pipe);
+                                       
+                                       //Log("SHUTTLE", Form("ps returned %s", buffer));
+                                       
+                                       Int_t mem = 0;
+                                       if ((sscanf(buffer, "%d\n", &mem) != 1) || !mem)
+                                       {
+                                               Log("SHUTTLE", "Error: Could not parse output of ps");
+                                               continue;
+                                       }
+                                       
+                                       if (expiredTime % 60 == 0)
+                                               Log("SHUTTLE", Form("%s: Checking process. Run time: %d seconds - Memory consumption: %d KB",
+                                                               fCurrentDetector.Data(), expiredTime, mem));
+                                       
+                                       if (mem > fConfig->GetPPMaxMem())
+                                       {
+                                               TString tmp;
+                                               tmp.Form("Process exceeds maximum allowed memory (%d KB > %d KB). Killing...",
+                                                       mem, fConfig->GetPPMaxMem());
+                                               Log("SHUTTLE", tmp);
+                                               Log(fCurrentDetector, tmp);
+       
+                                               kill(pid, 9);
+       
+                                               UpdateShuttleStatus(AliShuttleStatus::kPPOutOfMemory);
+                                               hasError = kTRUE;
+       
+                                               gSystem->Sleep(1000);
+                                       }
                                }
                        }
 
@@ -623,10 +1188,10 @@ Bool_t AliShuttle::Process(AliShuttleLogbookEntry* entry)
                        {
                                Int_t returnCode = WEXITSTATUS(status);
 
-                               Log("SHUTTLE", Form("The return code is %d", returnCode));
+                               Log("SHUTTLE", Form("%s: the return code is %d", fCurrentDetector.Data(),
+                                                                               returnCode));
 
-                               if (returnCode != 0)
-                               hasError = kTRUE;
+                               if (returnCode == 0) hasError = kTRUE;
                        }
                }
                else if (pid == 0)
@@ -634,52 +1199,53 @@ Bool_t AliShuttle::Process(AliShuttleLogbookEntry* entry)
                        // client
                        AliInfo(Form("In client process of %d - %s", GetCurrentRun(), aDetector->GetName()));
 
-                       UInt_t result = ProcessCurrentDetector();
-
-                       Int_t returnCode = 0; // will be set to 1 in case of an error
+                       AliInfo("Redirecting output...");
 
-                       if (!result)
+                       if ((freopen(GetLogFileName(fCurrentDetector), "w", stdout)) == 0)
                        {
-                               returnCode = 1;
-                               AliInfo(Form("\n \t\t\t****** run %d - %s: PREPROCESSOR ERROR ****** \n\n",
-                                                       GetCurrentRun(), aDetector->GetName()));
+                               Log("SHUTTLE", "Could not freopen stdout");
                        }
-                       else if (result == 2)
+                       else
                        {
-                               AliInfo(Form("\n \t\t\t****** run %d - %s: STORAGE ERROR ****** \n\n",
+                               fOutputRedirected = kTRUE;
+                               if ((dup2(fileno(stdout), fileno(stderr))) < 0)
+                                       Log("SHUTTLE", "Could not redirect stderr");
+                               
+                       }
+                       
+                       Bool_t success = ProcessCurrentDetector();
+                       if (success) // Preprocessor finished successfully!
+                       { 
+                               // Update time_processed field in FXS DB
+                               if (UpdateTable() == kFALSE)
+                                       Log("SHUTTLE", Form("Process - %s: Could not update FXS databases!"));
+
+                               // Transfer the data from local storage to main storage (Grid)
+                               UpdateShuttleStatus(AliShuttleStatus::kStoreStarted);
+                               if (StoreOCDB() == kFALSE)
+                               {
+                                       AliInfo(Form("\n \t\t\t****** run %d - %s: STORAGE ERROR ****** \n\n",
                                                        GetCurrentRun(), aDetector->GetName()));
-                       } else
-                       {
-                               AliInfo(Form("\n \t\t\t****** run %d - %s: DONE ****** \n\n",
+                                       UpdateShuttleStatus(AliShuttleStatus::kStoreError);
+                                       success = kFALSE;
+                               } else {
+                                       AliInfo(Form("\n \t\t\t****** run %d - %s: DONE ****** \n\n",
                                                        GetCurrentRun(), aDetector->GetName()));
+                                       UpdateShuttleStatus(AliShuttleStatus::kDone);
+                                       UpdateShuttleLogbook(fCurrentDetector, "DONE");
+                               }
                        }
 
-                       if (result > 0)
+                       for (UInt_t iSys=0; iSys<3; iSys++)
                        {
-                               // Process successful: Update time_processed field in FES logbooks!
-                               if (fFESCalled[kDAQ])
-                               {
-                                       if (UpdateDAQTable() == kFALSE)
-                                       returnCode = 1;
-                                       fFESlist[kDAQ].Clear();
-                               }
-                               //if(fFESCalled[kDCS]) {
-                               //  if (UpdateDCSTable(aDetector->GetName()) == kFALSE)
-                               //    returnCode = 1;
-                               //  fFESlist[kDCS].Clear();
-                               //}
-                               //if(fFESCalled[kHLT]) {
-                               //  if (UpdateHLTTable(aDetector->GetName()) == kFALSE)
-                               //    returnCode = 1;
-                               //      fFESlist[kHLT].Clear();
-                               //}
+                               if (fFXSCalled[iSys]) fFXSlist[iSys].Clear();
                        }
 
                        AliInfo(Form("Client process of %d - %s is exiting now with %d.",
-                                                       GetCurrentRun(), aDetector->GetName(), returnCode));
+                                                       GetCurrentRun(), aDetector->GetName(), success));
 
                        // the client exits here
-                       gSystem->Exit(returnCode);
+                       gSystem->Exit(success);
 
                        AliError("We should never get here!!!");
                }
@@ -691,41 +1257,48 @@ Bool_t AliShuttle::Process(AliShuttleLogbookEntry* entry)
        //check if shuttle is done for this run, if so update logbook
        TObjArray checkEntryArray;
        checkEntryArray.SetOwner(1);
-       TString whereClause = Form("where run=%d",GetCurrentRun());
-       if (QueryShuttleLogbook(whereClause.Data(), checkEntryArray)) {
+       TString whereClause = Form("where run=%d", GetCurrentRun());
+       if (!QueryShuttleLogbook(whereClause.Data(), checkEntryArray) || checkEntryArray.GetEntries() == 0) {
+               Log("SHUTTLE", Form("Process - Warning: Cannot check status of run %d on Shuttle logbook!",
+                                               GetCurrentRun()));
+               return hasError == kFALSE;
+       }
 
-               AliShuttleLogbookEntry* checkEntry = dynamic_cast<AliShuttleLogbookEntry*>
-                                                       (checkEntryArray.At(0));
+       AliShuttleLogbookEntry* checkEntry = dynamic_cast<AliShuttleLogbookEntry*>
+                                               (checkEntryArray.At(0));
 
-               if (checkEntry)
+       if (checkEntry)
+       {
+               if (checkEntry->IsDone())
                {
-                       if (checkEntry->IsDone())
-                       {
-                               Log("SHUTTLE","Process - Shuttle is DONE. Updating logbook");
-                               UpdateShuttleLogbook("shuttle_done");
-                       }
-                       else
+                       Log("SHUTTLE","Process - Shuttle is DONE. Updating logbook");
+                       UpdateShuttleLogbook("shuttle_done");
+               }
+               else
+               {
+                       for (UInt_t iDet=0; iDet<NDetectors(); iDet++)
                        {
-                               for (UInt_t iDet=0; iDet<NDetectors(); iDet++)
+                               if (checkEntry->GetDetectorStatus(iDet) == AliShuttleLogbookEntry::kUnprocessed)
                                {
-                                       if (checkEntry->GetDetectorStatus(iDet) == AliShuttleLogbookEntry::kUnprocessed)
-                                       {
-                                               AliDebug(2, Form("Run %d: setting %s as \"not first time unprocessed\"",
-                                                               checkEntry->GetRun(), GetDetName(iDet)));
-                                               fFirstUnprocessed[iDet] = kFALSE;
-                                       }
+                                       AliDebug(2, Form("Run %d: setting %s as \"not first time unprocessed\"",
+                                                       checkEntry->GetRun(), GetDetName(iDet)));
+                                       fFirstUnprocessed[iDet] = kFALSE;
                                }
                        }
                }
        }
 
+       // remove ML instance
+       delete fMonaLisa;
+       fMonaLisa = 0;
+
        fLogbookEntry = 0;
 
        return hasError == kFALSE;
 }
 
 //______________________________________________________________________________________________
-UInt_t AliShuttle::ProcessCurrentDetector()
+Bool_t AliShuttle::ProcessCurrentDetector()
 {
        //
         // Makes data retrieval just for a specific detector (fCurrentDetector).
@@ -733,83 +1306,130 @@ UInt_t AliShuttle::ProcessCurrentDetector()
 
        AliInfo(Form("Retrieving values for %s, run %d", fCurrentDetector.Data(), GetCurrentRun()));
 
-       UpdateShuttleStatus(AliShuttleStatus::kDCSStarted);
+       TMap dcsMap;
+       dcsMap.SetOwner(1);
+
+       Bool_t aDCSError = kFALSE;
+
+       // call preprocessor
+       AliPreprocessor* aPreprocessor =
+               dynamic_cast<AliPreprocessor*> (fPreprocessorMap.GetValue(fCurrentDetector));
 
-       TString host(fConfig->GetDCSHost(fCurrentDetector));
-       Int_t port = fConfig->GetDCSPort(fCurrentDetector);
+       aPreprocessor->Initialize(GetCurrentRun(), GetCurrentStartTime(), GetCurrentEndTime());
 
-       TIter iter(fConfig->GetDCSAliases(fCurrentDetector));
-       TObjString* anAlias;
-       TMap aliasMap;
-       aliasMap.SetOwner(1);
+       Bool_t processDCS = aPreprocessor->ProcessDCS();
 
-       Bool_t aDCSError = kFALSE;
-       fGridError = kFALSE;
-
-       while ((anAlias = (TObjString*) iter.Next())) {
-               TObjArray *valueSet = new TObjArray();
-               valueSet->SetOwner(1);
-               // TODO Test only... I've added a flag that allows to
-               // exclude DCS archive DB query
-               if(fgkProcessDCS){
-                       AliInfo("Querying DCS archive DB data...");
-                       aDCSError = (GetValueSet(host, port, anAlias->String(), valueSet) == 0);
-               } else {
-                       AliInfo(Form("Skipping DCS processing. Port = %d",port));
-                       aDCSError = kFALSE;
+       if (!processDCS || (fTestMode & kSkipDCS))
+       {
+               Log(fCurrentDetector, "In TESTMODE - Skipping DCS processing!");
+       } 
+       else if (fTestMode & kErrorDCS)
+       {
+               Log(fCurrentDetector, "In TESTMODE - Simulating DCS error");
+               UpdateShuttleStatus(AliShuttleStatus::kDCSStarted);
+               UpdateShuttleStatus(AliShuttleStatus::kDCSError);
+               return kFALSE;
+       } else {
+
+               UpdateShuttleStatus(AliShuttleStatus::kDCSStarted);
+
+               TString host(fConfig->GetDCSHost(fCurrentDetector));
+               Int_t port = fConfig->GetDCSPort(fCurrentDetector);
+
+               // Retrieval of Aliases
+               TObjString* anAlias = 0;
+               Int_t iAlias = 1;
+               Int_t nTotAliases= ((TMap*)fConfig->GetDCSAliases(fCurrentDetector))->GetEntries();
+               TIter iterAliases(fConfig->GetDCSAliases(fCurrentDetector));
+               while ((anAlias = (TObjString*) iterAliases.Next()))
+               {
+                       TObjArray *valueSet = new TObjArray();
+                       valueSet->SetOwner(1);
+
+                       if (((iAlias-1) % 500) == 0 || iAlias == nTotAliases)
+                               AliInfo(Form("Querying DCS archive: alias %s (%d of %d)",
+                                               anAlias->GetName(), iAlias++, nTotAliases));
+                       aDCSError = (GetValueSet(host, port, anAlias->String(), valueSet, kAlias) == 0);
+
+                       if(!aDCSError)
+                       {
+                               dcsMap.Add(anAlias->Clone(), valueSet);
+                       } else {
+                               Log(fCurrentDetector,
+                                       Form("ProcessCurrentDetector - Error while retrieving alias %s",
+                                               anAlias->GetName()));
+                               UpdateShuttleStatus(AliShuttleStatus::kDCSError);
+                               dcsMap.DeleteAll();
+                               return kFALSE;
+                       }
                }
-               if(!aDCSError) {
-                       aliasMap.Add(anAlias->Clone(), valueSet);
-               }else{
-                       Log(fCurrentDetector, Form("ProcessCurrentDetector - Error while retrieving alias %s",
-                                       anAlias->GetName()));
-                       UpdateShuttleStatus(AliShuttleStatus::kDCSError, kTRUE);
-                       aliasMap.DeleteAll();
-                       return 0;
+
+               // Retrieval of Data Points
+               TObjString* aDP = 0;
+               Int_t iDP = 0;
+               Int_t nTotDPs= ((TMap*)fConfig->GetDCSDataPoints(fCurrentDetector))->GetEntries();
+               TIter iterDP(fConfig->GetDCSDataPoints(fCurrentDetector));
+               while ((aDP = (TObjString*) iterDP.Next()))
+               {
+                       TObjArray *valueSet = new TObjArray();
+                       valueSet->SetOwner(1);
+                       if (((iDP-1) % 500) == 0 || iDP == nTotDPs)
+                               AliInfo(Form("Querying DCS archive: DP %s (%d of %d)",
+                                               aDP->GetName(), iDP++, nTotDPs));
+                       aDCSError = (GetValueSet(host, port, aDP->String(), valueSet, kDP) == 0);
+
+                       if(!aDCSError)
+                       {
+                               dcsMap.Add(aDP->Clone(), valueSet);
+                       } else {
+                               Log(fCurrentDetector,
+                                       Form("ProcessCurrentDetector - Error while retrieving data point %s",
+                                               aDP->GetName()));
+                               UpdateShuttleStatus(AliShuttleStatus::kDCSError);
+                               dcsMap.DeleteAll();
+                               return kFALSE;
+                       }
                }
        }
 
        // DCS Archive DB processing successful. Call Preprocessor!
        UpdateShuttleStatus(AliShuttleStatus::kPPStarted);
 
-       AliPreprocessor* aPreprocessor =
-               dynamic_cast<AliPreprocessor*> (fPreprocessorMap.GetValue(fCurrentDetector));
-
-       aPreprocessor->Initialize(GetCurrentRun(), GetCurrentStartTime(), GetCurrentEndTime());
-       UInt_t aPPResult = aPreprocessor->Process(&aliasMap);
+       UInt_t returnValue = aPreprocessor->Process(&dcsMap);
 
-       UInt_t returnValue = 0;
-       if (aPPResult == 0) { // Preprocessor error
+       if (returnValue > 0) // Preprocessor error!
+       {
+               Log(fCurrentDetector, Form("Preprocessor failed. Process returned %d.", returnValue));
                UpdateShuttleStatus(AliShuttleStatus::kPPError);
-               returnValue = 0;
-       } else if (fGridError == kFALSE) { // process and Grid storage ok!
-               UpdateShuttleStatus(AliShuttleStatus::kDone);
-               UpdateShuttleLogbook(fCurrentDetector, "DONE");
-               Log(fCurrentDetector.Data(),
-                       "ProcessCurrentDetector - Preprocessor and Grid storage ended successfully");
-               returnValue = 1;
-        } else { // Grid storage error (process ok, but object put in local storage)
-               UpdateShuttleStatus(AliShuttleStatus::kStoreFailed);
-               returnValue = 2;
+               dcsMap.DeleteAll();
+               return kFALSE;
        }
+       
+       // preprocessor ok!
+       UpdateShuttleStatus(AliShuttleStatus::kPPDone);
+       Log(fCurrentDetector, Form("ProcessCurrentDetector - %s preprocessor returned success",
+                               fCurrentDetector.Data()));
 
-       aliasMap.DeleteAll();
+       dcsMap.DeleteAll();
 
-       return returnValue;
+       return kTRUE;
 }
 
 //______________________________________________________________________________________________
 Bool_t AliShuttle::QueryShuttleLogbook(const char* whereClause,
                TObjArray& entries)
 {
-// Query DAQ's Shuttle logbook and fills detector status object.
-// Call QueryRunParameters to query DAQ logbook for run parameters.
+       // Query DAQ's Shuttle logbook and fills detector status object.
+       // Call QueryRunParameters to query DAQ logbook for run parameters.
+       //
+
+       entries.SetOwner(1);
 
        // check connection, in case connect
        if(!Connect(3)) return kFALSE;
 
        TString sqlQuery;
-       sqlQuery = Form("select * from logbook_shuttle %s order by run", whereClause);
+       sqlQuery = Form("select * from %s %s order by run", fConfig->GetShuttlelbTable(), whereClause);
 
        TSQLResult* aResult = fServer[3]->Query(sqlQuery);
        if (!aResult) {
@@ -817,28 +1437,22 @@ Bool_t AliShuttle::QueryShuttleLogbook(const char* whereClause,
                return kFALSE;
        }
 
+       AliDebug(2,Form("Query = %s", sqlQuery.Data()));
+
        if(aResult->GetRowCount() == 0) {
-               if(sqlQuery.Contains("where shuttle_done=0")){
-                       Log("SHUTTLE", "QueryShuttleLogbook - All runs in Shuttle Logbook are already DONE");
-                       delete aResult;
-                       return kTRUE;
-               } else {
-                       AliError("No entries in Shuttle Logbook match request");
-                       delete aResult;
-                       return kFALSE;
-               }
+               AliInfo("No entries in Shuttle Logbook match request");
+               delete aResult;
+               return kTRUE;
        }
 
        // TODO Check field count!
-       const UInt_t nCols = 24;
+       const UInt_t nCols = 22;
        if (aResult->GetFieldCount() != (Int_t) nCols) {
                AliError("Invalid SQL result field number!");
                delete aResult;
                return kFALSE;
        }
 
-       entries.SetOwner(1);
-
        TSQLRow* aRow;
        while ((aRow = aResult->Next())) {
                TString runString(aRow->GetField(0), aRow->GetFieldLength(0));
@@ -856,9 +1470,6 @@ Bool_t AliShuttle::QueryShuttleLogbook(const char* whereClause,
                delete aRow;
        }
 
-       if(sqlQuery.Contains("where shuttle_done=0"))
-               Log("SHUTTLE", Form("QueryShuttleLogbook - Found %d unprocessed runs in Shuttle Logbook",
-                                                       entries.GetEntriesFast()));
        delete aResult;
        return kTRUE;
 }
@@ -875,7 +1486,7 @@ AliShuttleLogbookEntry* AliShuttle::QueryRunParameters(Int_t run)
                return 0;
 
        TString sqlQuery;
-       sqlQuery.Form("select * from logbook where run=%d", run);
+       sqlQuery.Form("select * from %s where run=%d", fConfig->GetDAQlbTable(), run);
 
        TSQLResult* aResult = fServer[3]->Query(sqlQuery);
        if (!aResult) {
@@ -928,156 +1539,41 @@ AliShuttleLogbookEntry* AliShuttle::QueryRunParameters(Int_t run)
 }
 
 //______________________________________________________________________________________________
-Bool_t AliShuttle::TryToStoreAgain()
-{
-  // Called in case the detector failed to store the object in Grid OCDB
-  // It tries to store the object again, if it does not find more recent and overlapping objects
-  // Calls underlying TryToStoreAgain(const char*) function twice, for OCDB and Reference storage.
-
-       AliInfo("Trying to store OCDB data again...");
-       Bool_t resultCDB = TryToStoreAgain(fgkMainCDB);
-
-       AliInfo("Trying to store reference data again...");
-       Bool_t resultRef = TryToStoreAgain(fgkMainRefStorage);
-
-       return resultCDB && resultRef;
-}
-
-//______________________________________________________________________________________________
-Bool_t AliShuttle::TryToStoreAgain(TString& gridURI)
+Bool_t AliShuttle::GetValueSet(const char* host, Int_t port, const char* entry,
+                               TObjArray* valueSet, DCSType type)
 {
-  // Called by TryToStoreAgain(), performs actual storage retry
-
-       TObjArray* gridIds=0;
-
-       Bool_t result = kTRUE;
-
-       const char* type = 0;
-       TString backupURI;
-       if(gridURI == fgkMainCDB) {
-               type = "OCDB";
-               backupURI = fgkLocalCDB;
-       } else if(gridURI == fgkMainRefStorage) {
-               type = "reference";
-               backupURI = fgkLocalRefStorage;
-       } else {
-               AliError(Form("Invalid storage URI: %s", gridURI.Data()));
-               return kFALSE;
-       }
-
-       AliCDBManager* man = AliCDBManager::Instance();
+       // Retrieve all "entry" data points from the DCS server
+       // host, port: TSocket connection parameters
+       // entry: name of the alias or data point
+       // valueSet: array of retrieved AliDCSValue's
+       // type: kAlias or kDP
 
-       AliCDBStorage *gridSto = man->GetStorage(gridURI);
-       if(!gridSto) {
-               Log(fCurrentDetector.Data(),
-                       Form("TryToStoreAgain - cannot activate main %s storage", type));
+       AliDCSClient client(host, port, fTimeout, fRetries);
+       if (!client.IsConnected())
+       {
                return kFALSE;
        }
 
-       gridIds = gridSto->GetQueryCDBList();
-
-       // get objects previously stored in local CDB
-       AliCDBStorage *backupSto = man->GetStorage(backupURI);
-       AliCDBPath aPath(GetOfflineDetName(fCurrentDetector.Data()),"*","*");
-       // Local objects were stored with current run as Grid version!
-       TList* localEntries = backupSto->GetAll(aPath.GetPath(), GetCurrentRun(), GetCurrentRun());
-       localEntries->SetOwner(1);
-
-       // loop on local stored objects
-       TIter localIter(localEntries);
-       AliCDBEntry *aLocEntry = 0;
-       while((aLocEntry = dynamic_cast<AliCDBEntry*> (localIter.Next()))){
-               aLocEntry->SetOwner(1);
-               AliCDBId aLocId = aLocEntry->GetId();
-               aLocEntry->SetVersion(-1);
-               aLocEntry->SetSubVersion(-1);
-
-               // loop on Grid valid Id's
-               Bool_t store = kTRUE;
-               TIter gridIter(gridIds);
-               AliCDBId* aGridId = 0;
-               while((aGridId = dynamic_cast<AliCDBId*> (gridIter.Next()))){
-                       // If local object is valid up to infinity we store it only if it is
-                       // the first unprocessed run!
-                       if (aLocId.GetLastRun() == AliCDBRunRange::Infinity())
-                       {
-                               if (!fFirstUnprocessed[GetDetPos(fCurrentDetector)])
-                               {
-                                       Log(fCurrentDetector.Data(),
-                                               ("TryToStoreAgain - This object has validity infinite but there are previous unprocessed runs!"));
-                                       continue;
-                               } else {
-                                       break;
-                               }
-                       }
-                       if(aGridId->GetPath() != aLocId.GetPath()) continue;
-                       // skip all objects valid up to infinity
-                       if(aGridId->GetLastRun() == AliCDBRunRange::Infinity()) continue;
-                       // if we get here, it means there's already some more recent object stored on Grid!
-                       store = kFALSE;
-                       break;
-               }
-
-               if(!store){
-                       Log(fCurrentDetector.Data(),
-                               Form("TryToStoreAgain - A more recent object already exists in %s storage: <%s>",
-                                       type, aGridId->ToString().Data()));
-                       // removing local filename...
-                       // TODO maybe it's better not to remove it, it was not copied to the Grid!
-                       TString filename;
-                       backupSto->IdToFilename(aLocId, filename);
-                       AliInfo(Form("Removing local file %s", filename.Data()));
-                       gSystem->Exec(Form("rm %s",filename.Data()));
-                       continue;
-               }
-
-               // If we get here, the file can be stored!
-               Bool_t storeOk = gridSto->Put(aLocEntry);
-               if(storeOk){
-                       Log(fCurrentDetector.Data(),
-                               Form("TryToStoreAgain - Object <%s> successfully put into %s storage",
-                                       aLocId.ToString().Data(), type));
-
-                       // removing local filename...
-                       TString filename;
-                       backupSto->IdToFilename(aLocId, filename);
-                       AliInfo(Form("Removing local file %s", filename.Data()));
-                       gSystem->Exec(Form("rm %s", filename.Data()));
-                       continue;
-               } else  {
-                       Log(fCurrentDetector.Data(),
-                               Form("TryToStoreAgain - Grid %s storage of object <%s> failed again",
-                                       type, aLocId.ToString().Data()));
-                       result = kFALSE;
-               }
-       }
-       localEntries->Clear();
-
-       return result;
-}
-
-//______________________________________________________________________________________________
-Bool_t AliShuttle::GetValueSet(const char* host, Int_t port, const char* alias,
-                               TObjArray* valueSet)
-{
-// Retrieve all "alias" data points from the DCS server
-// host, port: TSocket connection parameters
-// alias: name of the alias
-// valueSet: array of retrieved AliDCSValue's
+       Int_t result=0;
 
-       AliDCSClient client(host, port, fTimeout, fRetries);
-       if (!client.IsConnected()) {
-               return kFALSE;
+       if (type == kAlias)
+       {
+               result = client.GetAliasValues(entry,
+                       GetCurrentStartTime(), GetCurrentEndTime(), valueSet);
+       } else
+       if (type == kDP)
+       {
+               result = client.GetDPValues(entry,
+                       GetCurrentStartTime(), GetCurrentEndTime(), valueSet);
        }
 
-       Int_t result = client.GetAliasValues(alias,
-               GetCurrentStartTime(), GetCurrentEndTime(), valueSet);
-
-       if (result < 0) {
+       if (result < 0)
+       {
                Log(fCurrentDetector.Data(), Form("GetValueSet - Can't get '%s'! Reason: %s",
-                       alias, AliDCSClient::GetErrorString(result)));
+                       entry, AliDCSClient::GetErrorString(result)));
 
-               if (result == AliDCSClient::fgkServerError) {
+               if (result == AliDCSClient::fgkServerError)
+               {
                        Log(fCurrentDetector.Data(), Form("GetValueSet - Server error: %s",
                                client.GetServerError().Data()));
                }
@@ -1092,155 +1588,84 @@ Bool_t AliShuttle::GetValueSet(const char* host, Int_t port, const char* alias,
 const char* AliShuttle::GetFile(Int_t system, const char* detector,
                const char* id, const char* source)
 {
-// Get calibration file from file exchange servers
-// calls specific getter according to system index (kDAQ, kDCS, kHLT)
-
-       switch(system){
-               case kDAQ:
-                       return GetDAQFileName(detector, id, source);
-                       break;
-               case kDCS:
-                       return GetDCSFileName(detector, id, source);
-                       break;
-               case kHLT:
-                       return GetHLTFileName(detector, id, source);
-                       break;
-               default:
-                       AliError(Form("No valid system index: %d",system));
+       // Get calibration file from file exchange servers
+       // First queris the FXS database for the file name, using the run, detector, id and source info
+       // then calls RetrieveFile(filename) for actual copy to local disk
+       // run: current run being processed (given by Logbook entry fLogbookEntry)
+       // detector: the Preprocessor name
+       // id: provided as a parameter by the Preprocessor
+       // source: provided by the Preprocessor through GetFileSources function
+
+       // check if test mode should simulate a FXS error
+       if (fTestMode & kErrorFXSFiles)
+       {
+               Log(detector, Form("GetFile - In TESTMODE - Simulating error while connecting to %s FXS", GetSystemName(system)));
+               return 0;
        }
-
-       return 0;
-}
-
-//______________________________________________________________________________________________
-TList* AliShuttle::GetFileSources(Int_t system, const char* detector, const char* id)
-{
-// Get sources producing the condition file Id from file exchange servers
-// calls specific getter according to system index (kDAQ, kDCS, kHLT)
-
-       switch(system){
-               case kDAQ:
-                       return GetDAQFileSources(detector, id);
-                       break;
-               case kDCS:
-                       return GetDCSFileSources(detector, id);
-                       break;
-               case kHLT:
-                       return GetHLTFileSources(detector, id);
-                       break;
-               default:
-                       AliError(Form("No valid system index: %d",system));
+       
+       // check connection, in case connect
+       if (!Connect(system))
+       {
+               Log(detector, Form("GetFile - Couldn't connect to %s FXS database", GetSystemName(system)));
+               return 0;
        }
 
-       return NULL;
-}
-
-//______________________________________________________________________________________________
-Bool_t AliShuttle::Connect(Int_t system)
-{
-// Connect to MySQL Server of the system's FES logbook
-// DAQ Logbook, Shuttle Logbook and DAQ FES Logbook are on the same host
-
-       // check connection: if already connected return
-       if(fServer[system] && fServer[system]->IsConnected()) return kTRUE;
-
-       TString lbHost, lbUser, lbPass;
+       // Query preparation
+       TString sourceName(source);
+       Int_t nFields = 3;
+       TString sqlQueryStart = Form("select filePath,size,fileChecksum from %s where",
+                                                               fConfig->GetFXSdbTable(system));
+       TString whereClause = Form("run=%d and detector=\"%s\" and fileId=\"%s\"",
+                                                               GetCurrentRun(), detector, id);
 
-       if (system < 3) // FES logbook servers
+       if (system == kDAQ)
        {
-               lbHost = Form("mysql://%s", fConfig->GetFESlbHost(system));
-               lbUser = fConfig->GetFESlbUser(system);
-               lbPass = fConfig->GetFESlbPass(system);
-       } else { // Run & Shuttle logbook servers
-       // TODO Will the Shuttle logbook server be the same as the Run logbook server ???
-               lbHost = Form("mysql://%s", fConfig->GetDAQlbHost());
-               lbUser = fConfig->GetDAQlbUser();
-               lbPass = fConfig->GetDAQlbPass();
+               whereClause += Form(" and DAQsource=\"%s\"", source);
        }
-
-       fServer[system] = TSQLServer::Connect(lbHost.Data(), lbUser.Data(), lbPass.Data());
-       if (!fServer[system] || !fServer[system]->IsConnected()) {
-               if(system < 3)
-               {
-               AliError(Form("Can't establish connection to FES logbook for %s",
-                                       AliShuttleInterface::GetSystemName(system)));
-               } else {
-               AliError("Can't establish connection to Run logbook.");
-               }
-               if(fServer[system]) delete fServer[system];
-               return kFALSE;
-       }
-
-       // Get tables
-       // TODO in the configuration should the table name be there too?
-       TSQLResult* aResult=0;
-       switch(system){
-               case kDAQ:
-                       aResult = fServer[kDAQ]->GetTables("REFSYSLOG");
-                       break;
-               case kDCS:
-                       //aResult = fServer[kDCS]->GetTables("REFSYSLOG");
-                       break;
-               case kHLT:
-                       //aResult = fServer[kHLT]->GetTables("REFSYSLOG");
-                       break;
-               default:
-                       aResult = fServer[3]->GetTables("REFSYSLOG");
-                       break;
+       else if (system == kDCS)
+       {
+               sourceName="none";
        }
-
-       delete aResult;
-       return kTRUE;
-}
-
-//______________________________________________________________________________________________
-const char* AliShuttle::GetDAQFileName(const char* detector, const char* id, const char* source)
-{
-// Retrieves a file from the DAQ FES.
-// First queris the DAQ logbook_fs for the DAQ file name, using the run, detector, id and source info
-// then calls RetrieveDAQFile(DAQfilename) for actual copy to local disk
-// run: current run being processed (given by Logbook entry fLogbookEntry)
-// detector: the Preprocessor name
-// id: provided as a parameter by the Preprocessor
-// source: provided by the Preprocessor through GetFileSources function
-
-       // check connection, in case connect
-       if (!Connect(kDAQ))
+       else if (system == kHLT)
        {
-               Log(detector, "GetDAQFileName - Couldn't connect to DAQ Logbook");
-               return 0;
+               whereClause += Form(" and DDLnumbers=\"%s\"", source);
+               nFields = 3;
        }
 
-       // Query preparation
-       TString sqlQueryStart = "select filePath from logbook_fs where";
-       TString whereClause = Form("run=%d and detector=\"%s\" and fileId=\"%s\" and DAQsource=\"%s\"",
-                               GetCurrentRun(), detector, id, source);
        TString sqlQuery = Form("%s %s", sqlQueryStart.Data(), whereClause.Data());
 
        AliDebug(2, Form("SQL query: \n%s",sqlQuery.Data()));
 
        // Query execution
        TSQLResult* aResult = 0;
-       aResult = dynamic_cast<TSQLResult*> (fServer[kDAQ]->Query(sqlQuery));
+       aResult = dynamic_cast<TSQLResult*> (fServer[system]->Query(sqlQuery));
        if (!aResult) {
-               Log(detector, Form("GetDAQFileName - Can't execute SQL query for: id = %s, source = %s",
-                               id, source));
+               Log(detector, Form("GetFileName - Can't execute SQL query to %s database for: id = %s, source = %s",
+                               GetSystemName(system), id, sourceName.Data()));
                return 0;
        }
 
        if(aResult->GetRowCount() == 0)
        {
                Log(detector,
-                       Form("GetDAQFileName - No entry in FES table for: id = %s, source = %s",
-                               id, source));
+                       Form("GetFileName - No entry in %s FXS db for: id = %s, source = %s",
+                               GetSystemName(system), id, sourceName.Data()));
                delete aResult;
                return 0;
        }
 
        if (aResult->GetRowCount() > 1) {
                Log(detector,
-                       Form("GetDAQFileName - More than one entry in FES table for: id = %s, source = %s",
-                               id, source));
+                       Form("GetFileName - More than one entry in %s FXS db for: id = %s, source = %s",
+                               GetSystemName(system), id, sourceName.Data()));
+               delete aResult;
+               return 0;
+       }
+
+       if (aResult->GetFieldCount() != nFields) {
+               Log(detector,
+                       Form("GetFileName - Wrong field count in %s FXS db for: id = %s, source = %s",
+                               GetSystemName(system), id, sourceName.Data()));
                delete aResult;
                return 0;
        }
@@ -1248,54 +1673,97 @@ const char* AliShuttle::GetDAQFileName(const char* detector, const char* id, con
        TSQLRow* aRow = dynamic_cast<TSQLRow*> (aResult->Next());
 
        if (!aRow){
-               Log(detector, Form("GetDAQFileName - Empty set result from query: id = %s, source = %s",
-                               id, source));
+               Log(detector, Form("GetFileName - Empty set result in %s FXS db from query: id = %s, source = %s",
+                               GetSystemName(system), id, sourceName.Data()));
                delete aResult;
                return 0;
        }
 
        TString filePath(aRow->GetField(0), aRow->GetFieldLength(0));
+       TString fileSize(aRow->GetField(1), aRow->GetFieldLength(1));
+       TString fileChecksum(aRow->GetField(2), aRow->GetFieldLength(2));
 
        delete aResult;
        delete aRow;
 
-       AliDebug(2, Form("filePath = %s",filePath.Data()));
+       AliDebug(2, Form("filePath = %s; size = %s, fileChecksum = %s",
+                               filePath.Data(), fileSize.Data(), fileChecksum.Data()));
 
        // retrieved file is renamed to make it unique
-       TString localFileName = Form("%s_%d_%s_%s.shuttle",
-                                       detector, GetCurrentRun(), id, source);
+       TString localFileName = Form("%s_%s_%d_%s_%s.shuttle",
+                                       GetSystemName(system), detector, GetCurrentRun(), id, sourceName.Data());
 
-       // file retrieval from DAQ FES
-       Bool_t result = RetrieveDAQFile(filePath.Data(), localFileName.Data());
-       if(!result) {
-               Log(detector, Form("GetDAQFileName - Copy of file %s from DAQ FES failed", filePath.Data()));
-               return 0;
-       } else {
-               AliInfo(Form("File %s copied from DAQ FES into %s/%s",
-                       filePath.Data(), fgkShuttleTempDir, localFileName.Data()));
+
+       // file retrieval from FXS
+       UInt_t nRetries = 0;
+       UInt_t maxRetries = 3;
+       Bool_t result = kFALSE;
+
+       // copy!! if successful TSystem::Exec returns 0
+       while(nRetries++ < maxRetries) {
+               AliDebug(2, Form("Trying to copy file. Retry # %d", nRetries));
+               result = RetrieveFile(system, filePath.Data(), localFileName.Data());
+               if(!result)
+               {
+                       Log(detector, Form("GetFileName - Copy of file %s from %s FXS failed",
+                                       filePath.Data(), GetSystemName(system)));
+                       continue;
+               } else {
+                       AliInfo(Form("File %s copied from %s FXS into %s/%s",
+                                               filePath.Data(), GetSystemName(system),
+                                               GetShuttleTempDir(), localFileName.Data()));
+               }
+
+               if (fileChecksum.Length()>0)
+               {
+                       // compare md5sum of local file with the one stored in the FXS DB
+                       Int_t md5Comp = gSystem->Exec(Form("md5sum %s/%s |grep %s 2>&1 > /dev/null",
+                                               GetShuttleTempDir(), localFileName.Data(), fileChecksum.Data()));
+
+                       if (md5Comp != 0)
+                       {
+                               Log(detector, Form("GetFileName - md5sum of file %s does not match with local copy!",
+                                                       filePath.Data()));
+                               result = kFALSE;
+                               continue;
+                       }
+               } else {
+                       Log(fCurrentDetector, Form("GetFile - md5sum of file %s not set in %s database, skipping comparison",
+                                                       filePath.Data(), GetSystemName(system)));
+               }
+               if (result) break;
        }
 
+       if(!result) return 0;
+
+       fFXSCalled[system]=kTRUE;
+       TObjString *fileParams = new TObjString(Form("%s#!?!#%s", id, sourceName.Data()));
+       fFXSlist[system].Add(fileParams);
 
-       fFESCalled[kDAQ]=kTRUE;
-       TObjString *fileParams = new TObjString(Form("%s_!?!_%s", id, source));
-       fFESlist[kDAQ].Add(fileParams);
+       static TString fullLocalFileName;
+       fullLocalFileName = TString::Format("%s/%s", GetShuttleTempDir(), localFileName.Data());
 
-       return localFileName.Data();
+       AliInfo(Form("fullLocalFileName = %s", fullLocalFileName.Data()));
+
+       return fullLocalFileName.Data();
 
 }
 
 //______________________________________________________________________________________________
-Bool_t AliShuttle::RetrieveDAQFile(const char* daqFileName, const char* localFileName)
+Bool_t AliShuttle::RetrieveFile(UInt_t system, const char* fxsFileName, const char* localFileName)
 {
+       //
+       // Copies file from FXS to local Shuttle machine
+       //
 
        // check temp directory: trying to cd to temp; if it does not exist, create it
-       AliDebug(2, Form("Copy file %s from DAQ FES into folder %s and rename it as %s",
-                       daqFileName,fgkShuttleTempDir, localFileName));
+       AliDebug(2, Form("Copy file %s from %s FXS into %s/%s",
+                       GetSystemName(system), fxsFileName, GetShuttleTempDir(), localFileName));
 
-       void* dir = gSystem->OpenDirectory(fgkShuttleTempDir);
+       void* dir = gSystem->OpenDirectory(GetShuttleTempDir());
        if (dir == NULL) {
-               if (gSystem->mkdir(fgkShuttleTempDir, kTRUE)) {
-                       AliError(Form("Can't open directory <%s>", fgkShuttleTempDir));
+               if (gSystem->mkdir(GetShuttleTempDir(), kTRUE)) {
+                       AliError(Form("Can't open directory <%s>", GetShuttleTempDir()));
                        return kFALSE;
                }
 
@@ -1303,43 +1771,75 @@ Bool_t AliShuttle::RetrieveDAQFile(const char* daqFileName, const char* localFil
                gSystem->FreeDirectory(dir);
        }
 
-       TString baseDAQFESFolder = "DAQ";
-       TString command = Form("scp %s@%s:%s/%s %s/%s",
-               fConfig->GetFESUser(kDAQ),
-               fConfig->GetFESHost(kDAQ),
-               baseDAQFESFolder.Data(),
-               daqFileName,
-               fgkShuttleTempDir,
-               localFileName);
+       TString baseFXSFolder;
+       if (system == kDAQ)
+       {
+               baseFXSFolder = "FES/";
+       }
+       else if (system == kDCS)
+       {
+               baseFXSFolder = "";
+       }
+       else if (system == kHLT)
+       {
+               baseFXSFolder = "~/";
+       }
 
-       AliDebug(2, Form("%s",command.Data()));
 
-       UInt_t nRetries = 0;
-       UInt_t maxRetries = 3;
+       TString command = Form("scp -oPort=%d -2 %s@%s:%s%s %s/%s",
+               fConfig->GetFXSPort(system),
+               fConfig->GetFXSUser(system),
+               fConfig->GetFXSHost(system),
+               baseFXSFolder.Data(),
+               fxsFileName,
+               GetShuttleTempDir(),
+               localFileName);
 
-       // copy!! if successful TSystem::Exec returns 0
-       while(nRetries++ < maxRetries) {
-               AliDebug(2, Form("Trying to copy file. Retry # %d", nRetries));
-               if(gSystem->Exec(command.Data()) == 0) return kTRUE;
-       }
+       AliDebug(2, Form("%s",command.Data()));
 
-       return kFALSE;
+       Bool_t result = (gSystem->Exec(command.Data()) == 0);
 
+       return result;
 }
 
 //______________________________________________________________________________________________
-TList* AliShuttle::GetDAQFileSources(const char* detector, const char* id)
+TList* AliShuttle::GetFileSources(Int_t system, const char* detector, const char* id)
 {
-// Retrieves a file from the DCS FES.
+       //
+       // Get sources producing the condition file Id from file exchange servers
+       //
+       
+       // check if test mode should simulate a FXS error
+       if (fTestMode & kErrorFXSSources)
+       {
+               Log(detector, Form("GetFileSources - In TESTMODE - Simulating error while connecting to %s FXS", GetSystemName(system)));
+               return 0;
+       }
+
+
+       if (system == kDCS)
+       {
+               AliError("DCS system has only one source of data!");
+               return NULL;
+       }
 
        // check connection, in case connect
-       if(!Connect(kDAQ)){
-               Log(detector, "GetDAQFileSources - Couldn't connect to DAQ Logbook");
-               return 0;
+       if (!Connect(system))
+       {
+               Log(detector, Form("GetFile - Couldn't connect to %s FXS database", GetSystemName(system)));
+               return NULL;
        }
 
-       // Query preparation
-       TString sqlQueryStart = "select DAQsource from logbook_fs where";
+       TString sourceName = 0;
+       if (system == kDAQ)
+       {
+               sourceName = "DAQsource";
+       } else if (system == kHLT)
+       {
+               sourceName = "DDLnumbers";
+       }
+
+       TString sqlQueryStart = Form("select %s from %s where", sourceName.Data(), fConfig->GetFXSdbTable(system));
        TString whereClause = Form("run=%d and detector=\"%s\" and fileId=\"%s\"",
                                GetCurrentRun(), detector, id);
        TString sqlQuery = Form("%s %s", sqlQueryStart.Data(), whereClause.Data());
@@ -1348,15 +1848,17 @@ TList* AliShuttle::GetDAQFileSources(const char* detector, const char* id)
 
        // Query execution
        TSQLResult* aResult;
-       aResult = fServer[kDAQ]->Query(sqlQuery);
+       aResult = fServer[system]->Query(sqlQuery);
        if (!aResult) {
-               Log(detector, Form("GetDAQFileSources - Can't execute SQL query for id: %s", id));
+               Log(detector, Form("GetFileSources - Can't execute SQL query to %s database for id: %s",
+                               GetSystemName(system), id));
                return 0;
        }
 
-       if (aResult->GetRowCount() == 0) {
+       if (aResult->GetRowCount() == 0)
+       {
                Log(detector,
-                       Form("GetDAQFileSources - No entry in FES table for id: %s", id));
+                       Form("GetFileSources - No entry in %s FXS table for id: %s", GetSystemName(system), id));
                delete aResult;
                return 0;
        }
@@ -1365,106 +1867,218 @@ TList* AliShuttle::GetDAQFileSources(const char* detector, const char* id)
        TList *list = new TList();
        list->SetOwner(1);
 
-       while((aRow = aResult->Next())){
+       while ((aRow = aResult->Next()))
+       {
 
-               TString daqSource(aRow->GetField(0), aRow->GetFieldLength(0));
-               AliDebug(2, Form("daqSource = %s", daqSource.Data()));
-               list->Add(new TObjString(daqSource));
+               TString source(aRow->GetField(0), aRow->GetFieldLength(0));
+               AliDebug(2, Form("%s = %s", sourceName.Data(), source.Data()));
+               list->Add(new TObjString(source));
                delete aRow;
        }
+
        delete aResult;
 
        return list;
-
 }
 
 //______________________________________________________________________________________________
-const char* AliShuttle::GetDCSFileName(const char* /*detector*/, const char* /*id*/, const char* /*source*/){
-// Retrieves a file from the DCS FES.
+Bool_t AliShuttle::Connect(Int_t system)
+{
+       // Connect to MySQL Server of the system's FXS MySQL databases
+       // DAQ Logbook, Shuttle Logbook and DAQ FXS db are on the same host
+       //
+
+       // check connection: if already connected return
+       if(fServer[system] && fServer[system]->IsConnected()) return kTRUE;
 
-return "You're in DCS";
+       TString dbHost, dbUser, dbPass, dbName;
 
-}
+       if (system < 3) // FXS db servers
+       {
+               dbHost = Form("mysql://%s:%d", fConfig->GetFXSdbHost(system), fConfig->GetFXSdbPort(system));
+               dbUser = fConfig->GetFXSdbUser(system);
+               dbPass = fConfig->GetFXSdbPass(system);
+               dbName =   fConfig->GetFXSdbName(system);
+       } else { // Run & Shuttle logbook servers
+       // TODO Will the Shuttle logbook server be the same as the Run logbook server ???
+               dbHost = Form("mysql://%s:%d", fConfig->GetDAQlbHost(), fConfig->GetDAQlbPort());
+               dbUser = fConfig->GetDAQlbUser();
+               dbPass = fConfig->GetDAQlbPass();
+               dbName =   fConfig->GetDAQlbDB();
+       }
 
-//______________________________________________________________________________________________
-TList* AliShuttle::GetDCSFileSources(const char* /*detector*/, const char* /*id*/){
-// Retrieves a file from the DCS FES.
+       fServer[system] = TSQLServer::Connect(dbHost.Data(), dbUser.Data(), dbPass.Data());
+       if (!fServer[system] || !fServer[system]->IsConnected()) {
+               if(system < 3)
+               {
+               AliError(Form("Can't establish connection to FXS database for %s",
+                                       AliShuttleInterface::GetSystemName(system)));
+               } else {
+               AliError("Can't establish connection to Run logbook.");
+               }
+               if(fServer[system]) delete fServer[system];
+               return kFALSE;
+       }
 
-return NULL;
+       // Get tables
+       TSQLResult* aResult=0;
+       switch(system){
+               case kDAQ:
+                       aResult = fServer[kDAQ]->GetTables(dbName.Data());
+                       break;
+               case kDCS:
+                       aResult = fServer[kDCS]->GetTables(dbName.Data());
+                       break;
+               case kHLT:
+                       aResult = fServer[kHLT]->GetTables(dbName.Data());
+                       break;
+               default:
+                       aResult = fServer[3]->GetTables(dbName.Data());
+                       break;
+       }
 
+       delete aResult;
+       return kTRUE;
 }
 
 //______________________________________________________________________________________________
-const char* AliShuttle::GetHLTFileName(const char* /*detector*/, const char* /*id*/, const char* /*source*/){
-// Retrieves a file from the HLT FES.
+Bool_t AliShuttle::UpdateTable()
+{
+       //
+       // Update FXS table filling time_processed field in all rows corresponding to current run and detector
+       //
 
-return "You're in HLT";
+       Bool_t result = kTRUE;
 
-}
+       for (UInt_t system=0; system<3; system++)
+       {
+               if(!fFXSCalled[system]) continue;
 
-//______________________________________________________________________________________________
-TList* AliShuttle::GetHLTFileSources(const char* /*detector*/, const char* /*id*/){
-// Retrieves a file from the HLT FES.
+               // check connection, in case connect
+               if (!Connect(system))
+               {
+                       Log(fCurrentDetector, Form("UpdateTable - Couldn't connect to %s FXS database", GetSystemName(system)));
+                       result = kFALSE;
+                       continue;
+               }
+
+               TTimeStamp now; // now
 
-return NULL;
+               // Loop on FXS list entries
+               TIter iter(&fFXSlist[system]);
+               TObjString *aFXSentry=0;
+               while ((aFXSentry = dynamic_cast<TObjString*> (iter.Next())))
+               {
+                       TString aFXSentrystr = aFXSentry->String();
+                       TObjArray *aFXSarray = aFXSentrystr.Tokenize("#!?!#");
+                       if (!aFXSarray || aFXSarray->GetEntries() != 2 )
+                       {
+                               Log(fCurrentDetector, Form("UpdateTable - error updating %s FXS entry. Check string: <%s>",
+                                       GetSystemName(system), aFXSentrystr.Data()));
+                               if(aFXSarray) delete aFXSarray;
+                               result = kFALSE;
+                               continue;
+                       }
+                       const char* fileId = ((TObjString*) aFXSarray->At(0))->GetName();
+                       const char* source = ((TObjString*) aFXSarray->At(1))->GetName();
 
+                       TString whereClause;
+                       if (system == kDAQ)
+                       {
+                               whereClause = Form("where run=%d and detector=\"%s\" and fileId=\"%s\" and DAQsource=\"%s\";",
+                                                       GetCurrentRun(), fCurrentDetector.Data(), fileId, source);
+                       }
+                       else if (system == kDCS)
+                       {
+                               whereClause = Form("where run=%d and detector=\"%s\" and fileId=\"%s\";",
+                                                       GetCurrentRun(), fCurrentDetector.Data(), fileId);
+                       }
+                       else if (system == kHLT)
+                       {
+                               whereClause = Form("where run=%d and detector=\"%s\" and fileId=\"%s\" and DDLnumbers=\"%s\";",
+                                                       GetCurrentRun(), fCurrentDetector.Data(), fileId, source);
+                       }
+
+                       delete aFXSarray;
+
+                       TString sqlQuery = Form("update %s set time_processed=%d %s", fConfig->GetFXSdbTable(system),
+                                                               now.GetSec(), whereClause.Data());
+
+                       AliDebug(2, Form("SQL query: \n%s",sqlQuery.Data()));
+
+                       // Query execution
+                       TSQLResult* aResult;
+                       aResult = dynamic_cast<TSQLResult*> (fServer[system]->Query(sqlQuery));
+                       if (!aResult)
+                       {
+                               Log(fCurrentDetector, Form("UpdateTable - %s db: can't execute SQL query <%s>",
+                                                               GetSystemName(system), sqlQuery.Data()));
+                               result = kFALSE;
+                               continue;
+                       }
+                       delete aResult;
+               }
+       }
+
+       return result;
 }
 
 //______________________________________________________________________________________________
-Bool_t AliShuttle::UpdateDAQTable()
+Bool_t AliShuttle::UpdateTableFailCase()
 {
-// Update DAQ table filling time_processed field in all rows corresponding to current run and detector
+       // Update FXS table filling time_processed field in all rows corresponding to current run and detector
+       // this is called in case the preprocessor is declared failed for the current run, because
+       // the fields are updated only in case of success
 
-       // check connection, in case connect
-       if(!Connect(kDAQ)){
-               Log(fCurrentDetector, "UpdateDAQTable - Couldn't connect to DAQ Logbook");
-               return kFALSE;
-       }
-
-       TTimeStamp now; // now
+       Bool_t result = kTRUE;
 
-       // Loop on FES list entries
-       TIter iter(&fFESlist[kDAQ]);
-       TObjString *aFESentry=0;
-       while((aFESentry = dynamic_cast<TObjString*> (iter.Next()))){
-               TString aFESentrystr = aFESentry->String();
-               TObjArray *aFESarray = aFESentrystr.Tokenize("_!?!_");
-               if(!aFESarray || aFESarray->GetEntries() != 2 ) {
-                       Log(fCurrentDetector, Form("UpdateDAQTable - error updating FES entry. Check string: <%s>",
-                               aFESentrystr.Data()));
-                       if(aFESarray) delete aFESarray;
-                       return kFALSE;
+       for (UInt_t system=0; system<3; system++)
+       {
+               // check connection, in case connect
+               if (!Connect(system))
+               {
+                       Log(fCurrentDetector, Form("UpdateTableFailCase - Couldn't connect to %s FXS database",
+                                                       GetSystemName(system)));
+                       result = kFALSE;
+                       continue;
                }
-               const char* fileId = ((TObjString*) aFESarray->At(0))->GetName();
-               const char* daqSource = ((TObjString*) aFESarray->At(1))->GetName();
-               TString whereClause = Form("where run=%d and detector=\"%s\" and fileId=\"%s\" and DAQsource=\"%s\";",
-                       GetCurrentRun(), fCurrentDetector.Data(), fileId, daqSource);
 
-               delete aFESarray;
+               TTimeStamp now; // now
+
+               // Loop on FXS list entries
+
+               TString whereClause = Form("where run=%d and detector=\"%s\";",
+                                               GetCurrentRun(), fCurrentDetector.Data());
 
-               TString sqlQuery = Form("update logbook_fs set time_processed=%d %s", now.GetSec(), whereClause.Data());
+
+               TString sqlQuery = Form("update %s set time_processed=%d %s", fConfig->GetFXSdbTable(system),
+                                                       now.GetSec(), whereClause.Data());
 
                AliDebug(2, Form("SQL query: \n%s",sqlQuery.Data()));
 
                // Query execution
                TSQLResult* aResult;
-               aResult = dynamic_cast<TSQLResult*> (fServer[3]->Query(sqlQuery));
-               if (!aResult) {
-                       Log(fCurrentDetector, Form("UpdateDAQTable - Can't execute SQL query <%s>", sqlQuery.Data()));
-                       return kFALSE;
+               aResult = dynamic_cast<TSQLResult*> (fServer[system]->Query(sqlQuery));
+               if (!aResult)
+               {
+                       Log(fCurrentDetector, Form("UpdateTableFailCase - %s db: can't execute SQL query <%s>",
+                                                       GetSystemName(system), sqlQuery.Data()));
+                       result = kFALSE;
+                       continue;
                }
                delete aResult;
        }
 
-       return kTRUE;
+       return result;
 }
 
-
 //______________________________________________________________________________________________
 Bool_t AliShuttle::UpdateShuttleLogbook(const char* detector, const char* status)
 {
-// Update Shuttle logbook filling detector or shuttle_done column
-// ex. of usage: UpdateShuttleLogbook("PHOS", "DONE") or UpdateShuttleLogbook("shuttle_done")
+       //
+       // Update Shuttle logbook filling detector or shuttle_done column
+       // ex. of usage: UpdateShuttleLogbook("PHOS", "DONE") or UpdateShuttleLogbook("shuttle_done")
+       //
 
        // check connection, in case connect
        if(!Connect(3)){
@@ -1474,8 +2088,17 @@ Bool_t AliShuttle::UpdateShuttleLogbook(const char* detector, const char* status
 
        TString detName(detector);
        TString setClause;
-       if(detName == "shuttle_done") {
+       if(detName == "shuttle_done")
+       {
                setClause = "set shuttle_done=1";
+
+               // Send the information to ML
+               TMonaLisaText  mlStatus("SHUTTLE_status", "Done");
+
+               TList mlList;
+               mlList.Add(&mlStatus);
+
+               fMonaLisa->SendParameters(&mlList);
        } else {
                TString statusStr(status);
                if(statusStr.Contains("done", TString::kIgnoreCase) ||
@@ -1491,8 +2114,8 @@ Bool_t AliShuttle::UpdateShuttleLogbook(const char* detector, const char* status
 
        TString whereClause = Form("where run=%d", GetCurrentRun());
 
-       TString sqlQuery = Form("update logbook_shuttle %s %s",
-                                       setClause.Data(), whereClause.Data());
+       TString sqlQuery = Form("update %s %s %s",
+                                       fConfig->GetShuttlelbTable(), setClause.Data(), whereClause.Data());
 
        AliDebug(2, Form("SQL query: \n%s",sqlQuery.Data()));
 
@@ -1511,7 +2134,9 @@ Bool_t AliShuttle::UpdateShuttleLogbook(const char* detector, const char* status
 //______________________________________________________________________________________________
 Int_t AliShuttle::GetCurrentRun() const
 {
-// Get current run from logbook entry
+       //
+       // Get current run from logbook entry
+       //
 
        return fLogbookEntry ? fLogbookEntry->GetRun() : -1;
 }
@@ -1519,7 +2144,9 @@ Int_t AliShuttle::GetCurrentRun() const
 //______________________________________________________________________________________________
 UInt_t AliShuttle::GetCurrentStartTime() const
 {
-// get current start time
+       //
+       // get current start time
+       //
 
        return fLogbookEntry ? fLogbookEntry->GetStartTime() : 0;
 }
@@ -1527,7 +2154,9 @@ UInt_t AliShuttle::GetCurrentStartTime() const
 //______________________________________________________________________________________________
 UInt_t AliShuttle::GetCurrentEndTime() const
 {
-// get current end time from logbook entry
+       //
+       // get current end time from logbook entry
+       //
 
        return fLogbookEntry ? fLogbookEntry->GetEndTime() : 0;
 }
@@ -1535,12 +2164,14 @@ UInt_t AliShuttle::GetCurrentEndTime() const
 //______________________________________________________________________________________________
 void AliShuttle::Log(const char* detector, const char* message)
 {
-// Fill log string with a message
+       //
+       // Fill log string with a message
+       //
 
-       void* dir = gSystem->OpenDirectory(fgkShuttleLogDir);
+       void* dir = gSystem->OpenDirectory(GetShuttleLogDir());
        if (dir == NULL) {
-               if (gSystem->mkdir(fgkShuttleLogDir, kTRUE)) {
-                       AliError(Form("Can't open directory <%s>", fgkShuttleTempDir));
+               if (gSystem->mkdir(GetShuttleLogDir(), kTRUE)) {
+                       AliError(Form("Can't open directory <%s>", GetShuttleLogDir()));
                        return;
                }
 
@@ -1549,13 +2180,18 @@ void AliShuttle::Log(const char* detector, const char* message)
        }
 
        TString toLog = Form("%s (%d): %s - ", TTimeStamp(time(0)).AsString("s"), getpid(), detector);
-       if(GetCurrentRun()>=0 ) toLog += Form("run %d - ", GetCurrentRun());
+       if (GetCurrentRun() >= 0) 
+               toLog += Form("run %d - ", GetCurrentRun());
        toLog += Form("%s", message);
 
        AliInfo(toLog.Data());
+       
+       // if we redirect the log output already to the file, leave here
+       if (fOutputRedirected && strcmp(detector, "SHUTTLE") != 0)
+               return;
 
-       TString fileName;
-       fileName.Form("%s/%s.log", fgkShuttleLogDir, detector);
+       TString fileName = GetLogFileName(detector);
+       
        gSystem->ExpandPathName(fileName);
 
        ofstream logFile;
@@ -1571,15 +2207,32 @@ void AliShuttle::Log(const char* detector, const char* message)
        logFile.close();
 }
 
+//______________________________________________________________________________________________
+TString AliShuttle::GetLogFileName(const char* detector) const
+{
+       // 
+       // returns the name of the log file for a given sub detector
+       //
+       
+       TString fileName;
+       
+       if (GetCurrentRun() >= 0) 
+               fileName.Form("%s/%s_%d.log", GetShuttleLogDir(), detector, GetCurrentRun());
+       else
+               fileName.Form("%s/%s.log", GetShuttleLogDir(), detector);
+
+       return fileName;
+}
+
 //______________________________________________________________________________________________
 Bool_t AliShuttle::Collect(Int_t run)
 {
-//
-// Collects conditions data for all UNPROCESSED run written to DAQ LogBook in case of run = -1 (default)
-// If a dedicated run is given this run is processed
-//
-// In operational mode, this is the Shuttle function triggered by the EOR signal.
-//
+       //
+       // Collects conditions data for all UNPROCESSED run written to DAQ LogBook in case of run = -1 (default)
+       // If a dedicated run is given this run is processed
+       //
+       // In operational mode, this is the Shuttle function triggered by the EOR signal.
+       //
 
        if (run == -1)
                Log("SHUTTLE","Collect - Shuttle called. Collecting conditions data for unprocessed runs");
@@ -1599,10 +2252,20 @@ Bool_t AliShuttle::Collect(Int_t run)
                return kFALSE;
        }
 
+       if (shuttleLogbookEntries.GetEntries() == 0)
+       {
+               if (run == -1)
+                       Log("SHUTTLE","Collect - Found no UNPROCESSED runs in Shuttle logbook");
+               else
+                       Log("SHUTTLE", Form("Collect - Run %d is already DONE "
+                                               "or it does not exist in Shuttle logbook", run));
+               return kTRUE;
+       }
+
        for (UInt_t iDet=0; iDet<NDetectors(); iDet++)
                fFirstUnprocessed[iDet] = kTRUE;
 
-       if (run != 1)
+       if (run != -1)
        {
                // query Shuttle logbook for earlier runs, check if some detectors are unprocessed,
                // flag them into fFirstUnprocessed array
@@ -1638,13 +2301,16 @@ Bool_t AliShuttle::Collect(Int_t run)
                return kFALSE;
        }
 
+       Log("SHUTTLE", "Collect - Requested run(s) successfully processed");
        return kTRUE;
 }
 
 //______________________________________________________________________________________________
 Bool_t AliShuttle::RetrieveConditionsData(const TObjArray& dateEntries)
 {
-// Retrieve conditions data for all runs that aren't processed yet
+       //
+       // Retrieve conditions data for all runs that aren't processed yet
+       //
 
        Bool_t hasError = kFALSE;
 
@@ -1655,6 +2321,10 @@ Bool_t AliShuttle::RetrieveConditionsData(const TObjArray& dateEntries)
                if (!Process(anEntry)){
                        hasError = kTRUE;
                }
+
+               // clean SHUTTLE temp directory
+               TString filename = Form("%s/*.shuttle", GetShuttleTempDir());
+               RemoveFile(filename.Data());
        }
 
        return hasError == kFALSE;
@@ -1663,40 +2333,48 @@ Bool_t AliShuttle::RetrieveConditionsData(const TObjArray& dateEntries)
 //______________________________________________________________________________________________
 ULong_t AliShuttle::GetTimeOfLastAction() const
 {
+       //
+       // Gets time of last action
+       //
+
        ULong_t tmp;
-       
+
        fMonitoringMutex->Lock();
 
        tmp = fLastActionTime;
-       
+
        fMonitoringMutex->UnLock();
-       
+
        return tmp;
 }
 
 //______________________________________________________________________________________________
 const TString AliShuttle::GetLastAction() const
 {
+       //
        // returns a string description of the last action
+       //
 
        TString tmp;
-       
+
        fMonitoringMutex->Lock();
        
        tmp = fLastAction;
        
        fMonitoringMutex->UnLock();
 
-       return tmp;     
+       return tmp;
 }
 
 //______________________________________________________________________________________________
 void AliShuttle::SetLastAction(const char* action)
 {
+       //
        // updates the monitoring variables
-       
+       //
+
        fMonitoringMutex->Lock();
-       
+
        fLastAction = action;
        fLastActionTime = time(0);
        
@@ -1706,7 +2384,9 @@ void AliShuttle::SetLastAction(const char* action)
 //______________________________________________________________________________________________
 const char* AliShuttle::GetRunParameter(const char* param)
 {
-// returns run parameter read from DAQ logbook
+       //
+       // returns run parameter read from DAQ logbook
+       //
 
        if(!fLogbookEntry) {
                AliError("No logbook entry!");
@@ -1715,3 +2395,162 @@ const char* AliShuttle::GetRunParameter(const char* param)
 
        return fLogbookEntry->GetRunParameter(param);
 }
+
+//______________________________________________________________________________________________
+AliCDBEntry* AliShuttle::GetFromOCDB(const char* detector, const AliCDBPath& path)
+{
+       //
+       // returns object from OCDB valid for current run
+       //
+
+       if (fTestMode & kErrorOCDB)
+       {
+               Log(detector, "GetFromOCDB - In TESTMODE - Simulating error with OCDB");
+               return 0;
+       }
+       
+       AliCDBStorage *sto = AliCDBManager::Instance()->GetStorage(fgkMainCDB);
+       if (!sto)
+       {
+               Log(detector, "GetFromOCDB - Cannot activate main OCDB for query!");
+               return 0;
+       }
+
+       return dynamic_cast<AliCDBEntry*> (sto->Get(path, GetCurrentRun()));
+}
+
+//______________________________________________________________________________________________
+Bool_t AliShuttle::SendMail()
+{
+       //
+       // sends a mail to the subdetector expert in case of preprocessor error
+       //
+       
+       if (fTestMode != kNone)
+               return kTRUE;
+
+       void* dir = gSystem->OpenDirectory(GetShuttleLogDir());
+       if (dir == NULL)
+       {
+               if (gSystem->mkdir(GetShuttleLogDir(), kTRUE))
+               {
+                       AliError(Form("Can't open directory <%s>", GetShuttleLogDir()));
+                       return kFALSE;
+               }
+
+       } else {
+               gSystem->FreeDirectory(dir);
+       }
+
+       TString bodyFileName;
+       bodyFileName.Form("%s/mail.body", GetShuttleLogDir());
+       gSystem->ExpandPathName(bodyFileName);
+
+       ofstream mailBody;
+       mailBody.open(bodyFileName, ofstream::out);
+
+       if (!mailBody.is_open())
+       {
+               AliError(Form("Could not open mail body file %s", bodyFileName.Data()));
+               return kFALSE;
+       }
+
+       TString to="";
+       TIter iterExperts(fConfig->GetResponsibles(fCurrentDetector));
+       TObjString *anExpert=0;
+       while ((anExpert = (TObjString*) iterExperts.Next()))
+       {
+               to += Form("%s,", anExpert->GetName());
+       }
+       to.Remove(to.Length()-1);
+       AliDebug(2, Form("to: %s",to.Data()));
+
+       // TODO this will be removed...
+       if (to.Contains("not_yet_set")) {
+               AliInfo("List of detector responsibles not yet set!");
+               return kFALSE;
+       }
+
+       TString cc="alberto.colla@cern.ch";
+
+       TString subject = Form("%s Shuttle preprocessor error in run %d !",
+                               fCurrentDetector.Data(), GetCurrentRun());
+       AliDebug(2, Form("subject: %s", subject.Data()));
+
+       TString body = Form("Dear %s expert(s), \n\n", fCurrentDetector.Data());
+       body += Form("SHUTTLE just detected that your preprocessor "
+                       "exited with ERROR state in run %d!!\n\n", GetCurrentRun());
+       body += Form("Please check %s status on the web page asap!\n\n", fCurrentDetector.Data());
+       body += Form("The last 10 lines of %s log file are following:\n\n");
+
+       AliDebug(2, Form("Body begin: %s", body.Data()));
+
+       mailBody << body.Data();
+       mailBody.close();
+       mailBody.open(bodyFileName, ofstream::out | ofstream::app);
+
+       TString logFileName = Form("%s/%s_%d.log", GetShuttleLogDir(), fCurrentDetector.Data(), GetCurrentRun());
+       TString tailCommand = Form("tail -n 10 %s >> %s", logFileName.Data(), bodyFileName.Data());
+       if (gSystem->Exec(tailCommand.Data()))
+       {
+               mailBody << Form("%s log file not found ...\n\n", fCurrentDetector.Data());
+       }
+
+       TString endBody = Form("------------------------------------------------------\n\n");
+       endBody += Form("In case of problems please contact the SHUTTLE core team.\n\n");
+       endBody += "Please do not answer this message directly, it is automatically generated.\n\n";
+       endBody += "Sincerely yours,\n\n \t\t\tthe SHUTTLE\n";
+
+       AliDebug(2, Form("Body end: %s", endBody.Data()));
+
+       mailBody << endBody.Data();
+
+       mailBody.close();
+
+       // send mail!
+       TString mailCommand = Form("mail -s \"%s\" -c %s %s < %s",
+                                               subject.Data(),
+                                               cc.Data(),
+                                               to.Data(),
+                                               bodyFileName.Data());
+       AliDebug(2, Form("mail command: %s", mailCommand.Data()));
+
+       Bool_t result = gSystem->Exec(mailCommand.Data());
+
+       return result == 0;
+}
+
+//______________________________________________________________________________________________
+const char* AliShuttle::GetRunType()
+{
+       //
+       // returns run type read from "run type" logbook
+       //
+
+       if(!fLogbookEntry) {
+               AliError("No logbook entry!");
+               return 0;
+       }
+
+       return fLogbookEntry->GetRunType();
+}
+
+//______________________________________________________________________________________________
+void AliShuttle::SetShuttleTempDir(const char* tmpDir)
+{
+       //
+       // sets Shuttle temp directory
+       //
+
+       fgkShuttleTempDir = gSystem->ExpandPathName(tmpDir);
+}
+
+//______________________________________________________________________________________________
+void AliShuttle::SetShuttleLogDir(const char* logDir)
+{
+       //
+       // sets Shuttle log directory
+       //
+
+       fgkShuttleLogDir = gSystem->ExpandPathName(logDir);
+}