]> git.uio.no Git - u/mrichter/AliRoot.git/blobdiff - STEER/AliReconstruction.cxx
AOD creation removed from reconstruction. See ANALYSIS/AliAnalysisTaskESDfilter instead.
[u/mrichter/AliRoot.git] / STEER / AliReconstruction.cxx
index f6c206816af15f5dfedcdaa7f930b0d984dea259..163cfc86df2e288bff39c9dd8cf2c5430fc21e33 100644 (file)
 // The reconstruction requires digits or raw data as input. For the creation //
 // of digits and raw data have a look at the class AliSimulation.            //
 //                                                                           //
+// The input data of a detector can be replaced by the corresponding HLT     //
+// data by calling (usual detector string)                                   //
+// SetUseHLTData("...");                                                     //
+//                                                                           //
 // For debug purposes the method SetCheckPointLevel can be used. If the      //
 // argument is greater than 0, files with ESD events will be written after   //
 // selected steps of the reconstruction for each event:                      //
 #include <TLorentzVector.h>
 #include <TArrayS.h>
 #include <TArrayD.h>
+#include <TObjArray.h>
 
 #include "AliReconstruction.h"
 #include "AliCodeTimer.h"
 #include "AliESDkink.h"
 #include "AliESDtrack.h"
 #include "AliESDCaloCluster.h"
+#include "AliESDCaloCells.h"
 #include "AliMultiplicity.h"
 #include "AliTracker.h"
 #include "AliVertexer.h"
 #include "AliGeomManager.h"
 #include "AliTrackPointArray.h"
 #include "AliCDBManager.h"
+#include "AliCDBStorage.h"
 #include "AliCDBEntry.h"
 #include "AliAlignObj.h"
 
 #include "AliCentralTrigger.h"
+#include "AliTriggerConfiguration.h"
+#include "AliTriggerClass.h"
 #include "AliCTPRawStream.h"
 
-#include "AliAODEvent.h"
-#include "AliAODHeader.h"
-#include "AliAODTrack.h"
-#include "AliAODVertex.h"
-#include "AliAODv0.h"
-#include "AliAODJet.h"
-#include "AliAODCaloCells.h"
-#include "AliAODCaloCluster.h"
-#include "AliAODPmdCluster.h"
-#include "AliAODFmdCluster.h"
-#include "AliAODTracklets.h"
-
-//#include "AliQADataMaker.h" 
+#include "AliQADataMakerRec.h" 
+#include "AliGlobalQADataMaker.h" 
 #include "AliQA.h"
 #include "AliQADataMakerSteer.h"
 
+#include "AliPlaneEff.h"
+
 #include "AliSysInfo.h" // memory snapshots
+#include "AliRawHLTManager.h"
 
 
 ClassImp(AliReconstruction)
@@ -194,12 +195,13 @@ ClassImp(AliReconstruction)
 const char* AliReconstruction::fgkDetectorName[AliReconstruction::fgkNDetectors] = {"ITS", "TPC", "TRD", "TOF", "PHOS", "HMPID", "EMCAL", "MUON", "FMD", "ZDC", "PMD", "T0", "VZERO", "ACORDE", "HLT"};
 
 //_____________________________________________________________________________
-AliReconstruction::AliReconstruction(const char* gAliceFilename, const char* cdbUri,
+AliReconstruction::AliReconstruction(const char* gAliceFilename,
                                     const char* name, const char* title) :
   TNamed(name, title),
 
   fUniformField(kTRUE),
   fRunVertexFinder(kTRUE),
+  fRunVertexFinderTracks(kTRUE),
   fRunHLTTracking(kFALSE),
   fRunMuonTracking(kFALSE),
   fRunV0Finder(kTRUE),
@@ -231,21 +233,29 @@ AliReconstruction::AliReconstruction(const char* gAliceFilename, const char* cdb
   fLoadAlignFromCDB(kTRUE),
   fLoadAlignData("ALL"),
   fESDPar(""),
+  fUseHLTData(),
 
   fRunLoader(NULL),
   fRawReader(NULL),
+  fParentRawReader(NULL),
 
   fVertexer(NULL),
   fDiamondProfile(NULL),
+  fDiamondProfileTPC(NULL),
+  fMeanVertexConstraint(kTRUE),
 
   fGRPList(NULL),
 
   fAlignObjArray(NULL),
-  fCDBUri(cdbUri),
-  fRemoteCDBUri(""),
+  fCDBUri(),
   fSpecCDBUri(), 
-  fRunQA(kTRUE) 
+  fInitCDBCalled(kFALSE),
+  fSetRunNumberFromDataCalled(kFALSE),
+  fRunQA(kTRUE),  
+  fRunGlobalQA(kTRUE),
+  fInLoopQA(kFALSE),
 
+  fRunPlaneEff(kFALSE)
 {
 // create reconstruction object with default parameters
   
@@ -253,9 +263,10 @@ AliReconstruction::AliReconstruction(const char* gAliceFilename, const char* cdb
     fReconstructor[iDet] = NULL;
     fLoader[iDet] = NULL;
     fTracker[iDet] = NULL;
-//    fQADataMaker[iDet] = NULL;
-//     fQACycles[iDet] = 999999;       
+    fQADataMaker[iDet] = NULL;
+       fQACycles[iDet] = 999999;       
   }
+  fQADataMaker[fgkNDetectors]=NULL;  //Global QA
   AliPID pid;
 }
 
@@ -265,6 +276,7 @@ AliReconstruction::AliReconstruction(const AliReconstruction& rec) :
 
   fUniformField(rec.fUniformField),
   fRunVertexFinder(rec.fRunVertexFinder),
+  fRunVertexFinderTracks(rec.fRunVertexFinderTracks),
   fRunHLTTracking(rec.fRunHLTTracking),
   fRunMuonTracking(rec.fRunMuonTracking),
   fRunV0Finder(rec.fRunV0Finder),
@@ -296,20 +308,28 @@ AliReconstruction::AliReconstruction(const AliReconstruction& rec) :
   fLoadAlignFromCDB(rec.fLoadAlignFromCDB),
   fLoadAlignData(rec.fLoadAlignData),
   fESDPar(rec.fESDPar),
+  fUseHLTData(rec.fUseHLTData),
 
   fRunLoader(NULL),
   fRawReader(NULL),
+  fParentRawReader(NULL),
 
   fVertexer(NULL),
   fDiamondProfile(NULL),
+  fDiamondProfileTPC(NULL),
+  fMeanVertexConstraint(rec.fMeanVertexConstraint),
 
   fGRPList(NULL),
 
   fAlignObjArray(rec.fAlignObjArray),
   fCDBUri(rec.fCDBUri),
-  fRemoteCDBUri(rec.fRemoteCDBUri),
   fSpecCDBUri(), 
-  fRunQA(kTRUE)
+  fInitCDBCalled(rec.fInitCDBCalled),
+  fSetRunNumberFromDataCalled(rec.fSetRunNumberFromDataCalled),
+  fRunQA(rec.fRunQA),  
+  fRunGlobalQA(rec.fRunGlobalQA),
+  fInLoopQA(rec.fInLoopQA),
+  fRunPlaneEff(rec.fRunPlaneEff)
 {
 // copy constructor
 
@@ -320,9 +340,10 @@ AliReconstruction::AliReconstruction(const AliReconstruction& rec) :
     fReconstructor[iDet] = NULL;
     fLoader[iDet] = NULL;
     fTracker[iDet] = NULL;
-//    fQADataMaker[iDet] = NULL;
-//     fQACycles[iDet] = rec.fQACycles[iDet];  
+    fQADataMaker[iDet] = NULL;
+       fQACycles[iDet] = rec.fQACycles[iDet];  
   }
+  fQADataMaker[fgkNDetectors]=NULL;  //Global QA
   for (Int_t i = 0; i < rec.fSpecCDBUri.GetEntriesFast(); i++) {
     if (rec.fSpecCDBUri[i]) fSpecCDBUri.Add(rec.fSpecCDBUri[i]->Clone());
   }
@@ -351,12 +372,15 @@ AliReconstruction::~AliReconstruction()
 }
 
 //_____________________________________________________________________________
-void AliReconstruction::InitCDBStorage()
+void AliReconstruction::InitCDB()
 {
 // activate a default CDB storage
 // First check if we have any CDB storage set, because it is used 
 // to retrieve the calibration and alignment constants
 
+  if (fInitCDBCalled) return;
+  fInitCDBCalled = kTRUE;
+
   AliCDBManager* man = AliCDBManager::Instance();
   if (man->IsDefaultStorageSet())
   {
@@ -364,33 +388,25 @@ void AliReconstruction::InitCDBStorage()
     AliWarning("Default CDB storage has been already set !");
     AliWarning(Form("Ignoring the default storage declared in AliReconstruction: %s",fCDBUri.Data()));
     AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-    fCDBUri = "";
+    fCDBUri = man->GetDefaultStorage()->GetURI();
   }
   else {
-    AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-    AliDebug(2, Form("Default CDB storage is set to: %s",fCDBUri.Data()));
-    AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
+    if (fCDBUri.Length() > 0) 
+    {
+       AliDebug(2,"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
+       AliDebug(2, Form("Default CDB storage is set to: %s", fCDBUri.Data()));
+       AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
+    } else {
+       fCDBUri="local://$ALICE_ROOT";
+       AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
+       AliWarning("Default CDB storage not yet set !!!!");
+       AliWarning(Form("Setting it now to: %s", fCDBUri.Data()));
+       AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
+               
+    }
     man->SetDefaultStorage(fCDBUri);
   }
 
-  // Remote storage (the Grid storage) is used if it is activated
-  // and if the object is not found in the default storage
-  // OBSOLETE: Removed
-  //  if (man->IsRemoteStorageSet())
-  //  {
-  //   AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-  //   AliWarning("Remote CDB storage has been already set !");
-  //   AliWarning(Form("Ignoring the remote storage declared in AliReconstruction: %s",fRemoteCDBUri.Data()));
-  //   AliWarning("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-  //   fRemoteCDBUri = "";
-  //  }
-  //  else {
-  //   AliDebug(2,"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-  //   AliDebug(2, Form("Remote CDB storage is set to: %s",fRemoteCDBUri.Data()));
-  //   AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-  //   man->SetRemoteStorage(fRemoteCDBUri);
-  //  }
-
   // Now activate the detector specific CDB storage locations
   for (Int_t i = 0; i < fSpecCDBUri.GetEntriesFast(); i++) {
     TObject* obj = fSpecCDBUri[i];
@@ -400,7 +416,7 @@ void AliReconstruction::InitCDBStorage()
     AliDebug(2, "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
     man->SetSpecificStorage(obj->GetName(), obj->GetTitle());
   }
-  man->Print();
+  
 }
 
 //_____________________________________________________________________________
@@ -412,17 +428,6 @@ void AliReconstruction::SetDefaultStorage(const char* uri) {
 
 }
 
-//_____________________________________________________________________________
-void AliReconstruction::SetRemoteStorage(const char* uri) {
-// Store the desired remote CDB storage location
-// Activate it later within the Run() method
-// Remote storage (the Grid storage) is used if it is activated
-// and if the object is not found in the default storage
-
-  fRemoteCDBUri = uri;
-
-}
-
 //_____________________________________________________________________________
 void AliReconstruction::SetSpecificStorage(const char* calibType, const char* uri) {
 // Store a detector-specific CDB storage location
@@ -465,19 +470,24 @@ void AliReconstruction::SetSpecificStorage(const char* calibType, const char* ur
 
 }
 
-
-
-
 //_____________________________________________________________________________
-Bool_t AliReconstruction::SetRunNumber()
+Bool_t AliReconstruction::SetRunNumberFromData()
 {
   // The method is called in Run() in order
   // to set a correct run number.
   // In case of raw data reconstruction the
   // run number is taken from the raw data header
 
-  if(AliCDBManager::Instance()->GetRun() < 0) {
-    if (!fRunLoader) {
+  if (fSetRunNumberFromDataCalled) return kTRUE;
+  fSetRunNumberFromDataCalled = kTRUE;
+  
+  AliCDBManager* man = AliCDBManager::Instance();
+  
+  if(man->GetRun() > 0) {
+       AliWarning("Run number is taken from event header! Ignoring settings in AliCDBManager!");
+  } 
+  
+  if (!fRunLoader) {
       AliError("No run loader is found !"); 
       return kFALSE;
     }
@@ -499,12 +509,21 @@ Bool_t AliReconstruction::SetRunNumber()
        AliError("Neither gAlice nor RawReader objects are found !");
        return kFALSE;
       }
-    }
-    AliInfo(Form("CDB Run number: %d",AliCDBManager::Instance()->GetRun()));
   }
+
+  man->Print();  
+  
   return kTRUE;
 }
 
+//_____________________________________________________________________________
+void AliReconstruction::SetCDBLock() {
+  // Set CDB lock: from now on it is forbidden to reset the run number
+  // or the default storage or to activate any further storage!
+  
+  AliCDBManager::Instance()->SetLock(1);
+}
+
 //_____________________________________________________________________________
 Bool_t AliReconstruction::MisalignGeometry(const TString& detectors)
 {
@@ -573,39 +592,64 @@ void AliReconstruction::SetOption(const char* detector, const char* option)
 
 
 //_____________________________________________________________________________
-Bool_t AliReconstruction::Run(const char* input)
+Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
 {
 // run the reconstruction
 
   AliCodeTimerAuto("")
   
   // set the input
-  if (!input) input = fInput.Data();
-     
-  TString fileName(input);
-  if (fileName.EndsWith("/")) {
-    fRawReader = new AliRawReaderFile(fileName);
-  } else if (fileName.EndsWith(".root")) {
-    fRawReader = new AliRawReaderRoot(fileName);
-  } else if (!fileName.IsNull()) {
-    fRawReader = new AliRawReaderDate(fileName);
-    fRawReader->SelectEvents(7);
+  if (!IsOnline) {
+    if (!input) input = fInput.Data();
+    TString fileName(input);
+    if (fileName.EndsWith("/")) {
+      fRawReader = new AliRawReaderFile(fileName);
+    } else if (fileName.EndsWith(".root")) {
+      fRawReader = new AliRawReaderRoot(fileName);
+    } else if (!fileName.IsNull()) {
+      fRawReader = new AliRawReaderDate(fileName);
+    }
+  }
+  else {
+    if (!input) {
+      AliError("Null pointer to the event structure!");
+      return kFALSE;
+    }
+    fRawReader = new AliRawReaderDate((void *)input);
   }
+
   if (!fEquipIdMap.IsNull() && fRawReader)
     fRawReader->LoadEquipmentIdsMap(fEquipIdMap);
 
+  if (!fUseHLTData.IsNull()) {
+    // create the RawReaderHLT which performs redirection of HLT input data for
+    // the specified detectors
+    AliRawReader* pRawReader=AliRawHLTManager::CreateRawReaderHLT(fRawReader, fUseHLTData.Data());
+    if (pRawReader) {
+      fParentRawReader=fRawReader;
+      fRawReader=pRawReader;
+    } else {
+      AliError(Form("can not create Raw Reader for HLT input %s", fUseHLTData.Data()));
+    }
+  }
+
    AliSysInfo::AddStamp("Start");
   // get the run loader
   if (!InitRunLoader()) return kFALSE;
    AliSysInfo::AddStamp("LoadLoader");
 
   // Initialize the CDB storage
-  InitCDBStorage();
-   AliSysInfo::AddStamp("LoadCDB");
+  InitCDB();
+  
+  AliSysInfo::AddStamp("LoadCDB");
 
   // Set run number in CDBManager (if it is not already set by the user)
-  if (!SetRunNumber()) if (fStopOnError) return kFALSE;
-
+  if (!SetRunNumberFromData()) if (fStopOnError) return kFALSE;
+  
+  // Set CDB lock: from now on it is forbidden to reset the run number
+  // or the default storage or to activate any further storage!
+  SetCDBLock();
+  
   // Import ideal TGeo geometry and apply misalignment
   if (!gGeoManager) {
     TString geom(gSystem->DirName(fGAliceFileName));
@@ -617,22 +661,24 @@ Bool_t AliReconstruction::Run(const char* input)
   if (!MisalignGeometry(fLoadAlignData)) if (fStopOnError) return kFALSE;
    AliSysInfo::AddStamp("LoadGeom");
 
-  //QA 
+  //QA
+  Int_t sameQACycle = kFALSE ;         
   AliQADataMakerSteer qas ; 
-  if ( fRunQA && fRawReader) 
-               qas.Run("ALL", fRawReader) ; 
- // checking the QA of previous steps
-  CheckQA() ; 
+       if (fRunQA && fRawReader) { 
+               qas.Run(fRunLocalReconstruction, fRawReader) ; 
+               sameQACycle = kTRUE; 
+       }
+       // checking the QA of previous steps
+  //CheckQA() ; 
  
+  /*
   // local reconstruction
   if (!fRunLocalReconstruction.IsNull()) {
     if (!RunLocalReconstruction(fRunLocalReconstruction)) {
       if (fStopOnError) {CleanUp(); return kFALSE;}
     }
   }
-//  if (!fRunVertexFinder && fRunTracking.IsNull() && 
-//      fFillESD.IsNull()) return kTRUE;
+  */
 
   // get vertexer
   if (fRunVertexFinder && !CreateVertexer()) {
@@ -721,18 +767,62 @@ Bool_t AliReconstruction::Run(const char* input)
        AliError("No diamond profile found in OCDB!");
   }
 
+  entry = 0;
+  entry = AliCDBManager::Instance()
+       ->Get("GRP/Calib/MeanVertexTPC");
+       
+  if(entry) {
+       fDiamondProfileTPC = dynamic_cast<AliESDVertex*> (entry->GetObject());  
+  } else {
+       AliError("No diamond profile found in OCDB!");
+  }
+
   AliVertexerTracks tVertexer(AliTracker::GetBz());
-  if(fDiamondProfile) tVertexer.SetVtxStart(fDiamondProfile);
+  if(fDiamondProfile && fMeanVertexConstraint) tVertexer.SetVtxStart(fDiamondProfile);
 
-  // loop over events
   if (fRawReader) fRawReader->RewindEvents();
-   TString detStr(fFillESD) ; 
 
   ProcInfo_t ProcInfo;
   gSystem->GetProcInfo(&ProcInfo);
   AliInfo(Form("Current memory usage %d %d", ProcInfo.fMemResident, ProcInfo.fMemVirtual));
   
+
+  //Initialize the QA and start of cycle for out-of-cycle QA
+  if (fRunQA) {
+     TString detStr(fFillESD); 
+     for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
+        if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
+        AliQADataMakerRec *qadm = GetQADataMaker(iDet);  
+        if (!qadm) continue;
+        AliInfo(Form("Initializing the QA data maker for %s", 
+               fgkDetectorName[iDet]));
+        qadm->Init(AliQA::kRECPOINTS, AliCDBManager::Instance()->GetRun());
+        qadm->Init(AliQA::kESDS, AliCDBManager::Instance()->GetRun());
+ //       if (!fInLoopQA) {
+//           qadm->StartOfCycle(AliQA::kRECPOINTS);
+//           qadm->StartOfCycle(AliQA::kESDS,"same");
+//        }
+     }
+  }
+  if (fRunGlobalQA) {
+         AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
+     AliInfo(Form("Initializing the global QA data maker"));
+     TObjArray *arr=
+          qadm->Init(AliQA::kRECPOINTS, AliCDBManager::Instance()->GetRun());
+     AliTracker::SetResidualsArray(arr);
+     qadm->Init(AliQA::kESDS, AliCDBManager::Instance()->GetRun());
+     if (!fInLoopQA) {
+        qadm->StartOfCycle(AliQA::kRECPOINTS, sameQACycle);
+        qadm->StartOfCycle(AliQA::kESDS, "same");
+     }
+  }
+
+  //Initialize the Plane Efficiency framework
+  if (fRunPlaneEff && !InitPlaneEff()) {
+    if(fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
+  }
+
+  //******* The loop over events
   for (Int_t iEvent = 0; iEvent < fRunLoader->GetNumberOfEvents(); iEvent++) {
     if (fRawReader) fRawReader->NextEvent();
     if ((iEvent < fFirstEvent) || ((fLastEvent >= 0) && (iEvent > fLastEvent))) {
@@ -740,17 +830,37 @@ Bool_t AliReconstruction::Run(const char* input)
       if (treeOld) {
        esd->ReadFromTree(treeOld);
        treeOld->GetEntry(iEvent);
+       tree->Fill();
       }
-      tree->Fill();
       if (hlttreeOld) {
        esd->ReadFromTree(hlttreeOld);
        hlttreeOld->GetEntry(iEvent);
+       hlttree->Fill();
       }
-      hlttree->Fill();
       continue;
     }
     
     AliInfo(Form("processing event %d", iEvent));
+
+    //Start of cycle for the in-loop QA
+    if (fInLoopQA) {
+       if (fRunQA) {
+          TString detStr(fFillESD); 
+          for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
+             if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
+             AliQADataMakerRec *qadm = GetQADataMaker(iDet);  
+             if (!qadm) continue;
+             qadm->StartOfCycle(AliQA::kRECPOINTS, sameQACycle);
+             qadm->StartOfCycle(AliQA::kESDS, "same") ;        
+          }
+       }
+       if (fRunGlobalQA) {
+          AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
+          qadm->StartOfCycle(AliQA::kRECPOINTS, sameQACycle);
+          qadm->StartOfCycle(AliQA::kESDS, "same");
+       }
+    }
+
     fRunLoader->GetEvent(iEvent);
 
     char aFileName[256];
@@ -759,14 +869,13 @@ Bool_t AliReconstruction::Run(const char* input)
            fRunLoader->GetHeader()->GetEventNrInRun());
     if (!gSystem->AccessPathName(aFileName)) continue;
 
-    // local reconstruction
+    // local signle event reconstruction
     if (!fRunLocalReconstruction.IsNull()) {
       if (!RunLocalEventReconstruction(fRunLocalReconstruction)) {
        if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
       }
     }
 
-  
     esd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
     hltesd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
     esd->SetEventNumberInFile(fRunLoader->GetHeader()->GetEventNrInRun());
@@ -794,7 +903,7 @@ Bool_t AliReconstruction::Run(const char* input)
     // HLT tracking
     if (!fRunTracking.IsNull()) {
       if (fRunHLTTracking) {
-       hltesd->SetVertex(esd->GetVertex());
+       hltesd->SetPrimaryVertexSPD(esd->GetVertex());
        if (!RunHLTTracking(hltesd)) {
          if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
        }
@@ -827,9 +936,6 @@ Bool_t AliReconstruction::Run(const char* input)
       }
     }
   
-//    if (!fFillESD.IsNull()) 
-//    RunQA(fFillESD.Data(), esd);
-
     // fill Event header information from the RawEventHeader
     if (fRawReader){FillRawEventHeaderESD(esd);}
 
@@ -848,31 +954,100 @@ Bool_t AliReconstruction::Run(const char* input)
 
     file->cd();
 
-    //Try to improve the reconstructed primary vertex position using the tracks
-    AliESDVertex *pvtx=0;
-    Bool_t dovertex=kTRUE;
-    TObject* obj = fOptions.FindObject("ITS");
+    //
+    // Propagate track to the beam pipe  (if not laready done by ITS)
+    //
+    const Int_t ntracks = esd->GetNumberOfTracks();
+    const Double_t kBz = esd->GetMagneticField();
+    const Double_t kRadius  = 2.8; //something less than the beam pipe radius
+
+    TObjArray trkArray;
+    UShort_t *selectedIdx=new UShort_t[ntracks];
+
+    for (Int_t itrack=0; itrack<ntracks; itrack++){
+      const Double_t kMaxStep = 5;   //max step over the material
+      Bool_t ok;
+
+      AliESDtrack *track = esd->GetTrack(itrack);
+      if (!track) continue;
+
+      AliExternalTrackParam *tpcTrack =
+           (AliExternalTrackParam *)track->GetTPCInnerParam();
+      ok = kFALSE;
+      if (tpcTrack)
+       ok = AliTracker::
+         PropagateTrackTo(tpcTrack,kRadius,track->GetMass(),kMaxStep,kTRUE);
+
+
+
+      if (ok) {
+       Int_t n=trkArray.GetEntriesFast();
+        selectedIdx[n]=track->GetID();
+        trkArray.AddLast(tpcTrack);
+      }
+
+      if (track->GetX() < kRadius) continue;
+
+      ok = AliTracker::
+           PropagateTrackTo(track,kRadius,track->GetMass(),kMaxStep,kTRUE);
+      if (ok) {
+         track->RelateToVertex(esd->GetPrimaryVertexSPD(), kBz, kRadius);
+      }
+    }
+
+    //
+    // Improve the reconstructed primary vertex position using the tracks
+    //
+    TObject *obj = fOptions.FindObject("ITS");
     if (obj) {
       TString optITS = obj->GetTitle();
       if (optITS.Contains("cosmics") || optITS.Contains("COSMICS")) 
-       dovertex=kFALSE;
+       fRunVertexFinderTracks=kFALSE;
+    }
+    if (fRunVertexFinderTracks) {
+       // TPC + ITS primary vertex
+       tVertexer.SetITSrefitRequired();
+       if(fDiamondProfile && fMeanVertexConstraint) {
+        tVertexer.SetVtxStart(fDiamondProfile);
+       } else {
+        tVertexer.SetConstraintOff();
+       }
+       AliESDVertex *pvtx=tVertexer.FindPrimaryVertex(esd);
+       if (pvtx) {
+          if (pvtx->GetStatus()) {
+             esd->SetPrimaryVertex(pvtx);
+             for (Int_t i=0; i<ntracks; i++) {
+                AliESDtrack *t = esd->GetTrack(i);
+                 t->RelateToVertex(pvtx, kBz, kRadius);
+             } 
+          }
+       }
+
+       // TPC-only primary vertex
+       tVertexer.SetITSrefitNotRequired();
+       if(fDiamondProfileTPC && fMeanVertexConstraint) {
+        tVertexer.SetVtxStart(fDiamondProfileTPC);
+       } else {
+        tVertexer.SetConstraintOff();
+       }
+       pvtx=tVertexer.FindPrimaryVertex(&trkArray,selectedIdx);
+       if (pvtx) {
+          if (pvtx->GetStatus()) {
+             esd->SetPrimaryVertexTPC(pvtx);
+             Int_t nsel=trkArray.GetEntriesFast();
+             for (Int_t i=0; i<nsel; i++) {
+                AliExternalTrackParam *t = 
+                   (AliExternalTrackParam *)trkArray.UncheckedAt(i);
+                 t->PropagateToDCA(pvtx, kBz, kRadius);
+             } 
+          }
+       }
+
     }
-    if(dovertex) pvtx=tVertexer.FindPrimaryVertex(esd);
+    delete[] selectedIdx;
+
     if(fDiamondProfile) esd->SetDiamond(fDiamondProfile);
     
-    if (pvtx)
-    if (pvtx->GetStatus()) {
-       // Store the improved primary vertex
-       esd->SetPrimaryVertex(pvtx);
-       // Propagate the tracks to the DCA to the improved primary vertex
-       Double_t somethingbig = 777.;
-       Double_t bz = esd->GetMagneticField();
-       Int_t nt=esd->GetNumberOfTracks();
-       while (nt--) {
-        AliESDtrack *t = esd->GetTrack(nt);
-         t->RelateToVertex(pvtx, bz, somethingbig);
-       } 
-    }
 
     if (fRunV0Finder) {
        // V0 finding
@@ -888,6 +1063,12 @@ Bool_t AliReconstruction::Run(const char* input)
  
     // write ESD
     if (fCleanESD) CleanESD(esd);
+
+    if (fRunGlobalQA) {
+       AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
+       if (qadm) qadm->Exec(AliQA::kESDS, esd);
+    }
+
     if (fWriteESDfriend) {
       esdf->~AliESDfriend();
       new (esdf) AliESDfriend(); // Reset...
@@ -905,25 +1086,40 @@ Bool_t AliReconstruction::Run(const char* input)
       esdf->~AliESDfriend();
       new (esdf) AliESDfriend(); // Reset...
     }
-    // esdf->Reset();
-    // delete esdf; esdf = 0;
-  // ESD QA 
  
     gSystem->GetProcInfo(&ProcInfo);
     AliInfo(Form("Event %d -> Current memory usage %d %d",iEvent, ProcInfo.fMemResident, ProcInfo.fMemVirtual));
-  }
   
-  detStr = fFillESD ; 
-//  // write quality assurance ESDs data (one entry for all events)
-//  for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
-//     if (!IsSelected(fgkDetectorName[iDet], detStr)) 
-//             continue;
-//    AliQADataMaker * qadm = GetQADataMaker(iDet);
-//    if (!qadm) continue;
-//    qadm->EndOfCycle(AliQA::kRECPOINTS);
-//    qadm->EndOfCycle(AliQA::kESDS);
-//    qadm->Finish();
-//  }
+
+  // End of cycle for the in-loop QA
+     if (fInLoopQA) {
+        if (fRunQA) {
+           RunQA(fFillESD.Data(), esd);
+           TString detStr(fFillESD); 
+           for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
+                          if (!IsSelected(fgkDetectorName[iDet], detStr)) 
+                                  continue;
+                          AliQADataMakerRec * qadm = GetQADataMaker(iDet);
+                          if (!qadm) 
+                                  continue;
+                          qadm->EndOfCycle(AliQA::kRECPOINTS);
+                          qadm->EndOfCycle(AliQA::kESDS);
+                          qadm->Finish();
+                  }
+        }
+        if (fRunGlobalQA) {
+           AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
+           if (qadm) {
+             qadm->EndOfCycle(AliQA::kRECPOINTS);
+             qadm->EndOfCycle(AliQA::kESDS);
+             qadm->Finish();
+          }
+        }
+     }
+  } 
+  //******** End of the loop over events 
+
+
 
   tree->GetUserInfo()->Add(esd);
   hlttree->GetUserInfo()->Add(hltesd);
@@ -951,7 +1147,7 @@ Bool_t AliReconstruction::Run(const char* input)
         
    AliCDBId* id=0;      
    while((id = dynamic_cast<AliCDBId*> (iter2.Next()))){        
-         cdbListCopy->Add(id->Clone());         
+         cdbListCopy->Add(new TObjString(id->ToString().Data()));       
    }    
         
    tree->GetUserInfo()->Add(cdbMapCopy);        
@@ -966,42 +1162,60 @@ Bool_t AliReconstruction::Run(const char* input)
 
 
   file->cd();
+
   if (fWriteESDfriend)
     tree->SetBranchStatus("ESDfriend*",0);
   // we want to have only one tree version number
   tree->Write(tree->GetName(),TObject::kOverwrite);
   hlttree->Write();
 
-  if (fWriteAOD) {
-    TFile *aodFile = TFile::Open("AliAOD.root", "RECREATE");
-    ESDFile2AODFile(file, aodFile);
-    aodFile->Close();
+// Finish with Plane Efficiency evaluation: before of CleanUp !!!
+  if (fRunPlaneEff && !FinishPlaneEff()) {
+   AliWarning("Finish PlaneEff evaluation failed");
   }
 
   gROOT->cd();
   CleanUp(file, fileOld);
-  
+    
+  if (fWriteAOD) {
+    AliWarning("AOD creation not supported anymore during reconstruction. See ANALYSIS/AliAnalysisTaskESDfilter.cxx instead.");
+  }
+
   // Create tags for the events in the ESD tree (the ESD tree is always present)
   // In case of empty events the tags will contain dummy values
   AliESDTagCreator *esdtagCreator = new AliESDTagCreator();
   esdtagCreator->CreateESDTags(fFirstEvent,fLastEvent,fGRPList);
   if (fWriteAOD) {
-    AliAODTagCreator *aodtagCreator = new AliAODTagCreator();
-    aodtagCreator->CreateAODTags(fFirstEvent,fLastEvent,fGRPList);
+    AliWarning("AOD tag creation not supported anymore during reconstruction.");
   }
 
-  //QA 
-  if ( fRunQA ) {
-       qas.Run(fRunLocalReconstruction.Data(), AliQA::kRECPOINTS) ;
-//     qas.Reset() ;
-       qas.Run(fRunTracking.Data(), AliQA::kESDS) ;
+  //Finish QA and end of cycle for out-of-loop QA
+  if (!fInLoopQA) {
+     if (fRunQA) {
+        qas.Run(fRunLocalReconstruction.Data(), AliQA::kRECPOINTS, sameQACycle);
+        //qas.Reset() ;
+        qas.Run(fRunTracking.Data(), AliQA::kESDS, sameQACycle);
+     }
+     if (fRunGlobalQA) {
+        AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
+        if (qadm) {
+          qadm->EndOfCycle(AliQA::kRECPOINTS);
+          qadm->EndOfCycle(AliQA::kESDS);
+          qadm->Finish();
+       }
+     }
   }
+  
+  // Cleanup of CDB manager: cache and active storages!
+  AliCDBManager::Instance()->ClearCache();
+  
+  
   return kTRUE;
 }
 
 
 //_____________________________________________________________________________
-Bool_t AliReconstruction::RunLocalReconstruction(const TString& detectors)
+Bool_t AliReconstruction::RunLocalReconstruction(const TString& /*detectors*/)
 {
 // run the local reconstruction
   static Int_t eventNr=0;
@@ -1060,6 +1274,7 @@ Bool_t AliReconstruction::RunLocalReconstruction(const TString& detectors)
 Bool_t AliReconstruction::RunLocalEventReconstruction(const TString& detectors)
 {
 // run the local reconstruction
+
   static Int_t eventNr=0;
   AliCodeTimerAuto("")
 
@@ -1073,7 +1288,6 @@ Bool_t AliReconstruction::RunLocalEventReconstruction(const TString& detectors)
       AliWarning(Form("No loader is defined for %s!",fgkDetectorName[iDet]));
       continue;
     }
-
     // conversion of digits
     if (fRawReader && reconstructor->HasDigitConversion()) {
       AliInfo(Form("converting raw data digits into root objects for %s", 
@@ -1088,7 +1302,6 @@ Bool_t AliReconstruction::RunLocalEventReconstruction(const TString& detectors)
       loader->WriteDigits("OVERWRITE");
       loader->UnloadDigits();
     }
-
     // local reconstruction
     AliInfo(Form("running reconstruction for %s", fgkDetectorName[iDet]));
     AliCodeTimerAuto(Form("running reconstruction for %s", fgkDetectorName[iDet]));
@@ -1110,20 +1323,21 @@ Bool_t AliReconstruction::RunLocalEventReconstruction(const TString& detectors)
       loader->UnloadDigits();
     }
 
-//    AliQADataMaker * qadm = GetQADataMaker(iDet);
-//    if (qadm) {
-//      AliCodeTimerStart(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
-//      AliInfo(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
-//       
-//     if (qadm->IsCycleDone() ) {
-//      qadm->EndOfCycle(AliQA::kRECPOINTS) ; 
-//       qadm->EndOfCycle(AliQA::kESDS) ; 
-//      qadm->StartOfCycle(AliQA::kRECPOINTS) ; 
-//       qadm->StartOfCycle(AliQA::kESDS, "same") ; 
-//     }
-//      qadm->Exec(AliQA::kRECPOINTS, clustersTree) ; 
-//      AliCodeTimerStop(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
-//    }
+    // In-loop QA for local reconstrucion 
+    if (fRunQA && fInLoopQA) {
+       AliQADataMakerRec * qadm = GetQADataMaker(iDet);
+       if (qadm) {
+         //AliCodeTimerStart
+         //(Form("Running QA data maker for %s", fgkDetectorName[iDet]));
+         //AliInfo
+          //(Form("Running QA data maker for %s", fgkDetectorName[iDet]));
+
+         qadm->Exec(AliQA::kRECPOINTS, clustersTree) ;
+         //AliCodeTimerStop
+          //(Form("Running QA data maker for %s", fgkDetectorName[iDet]));
+       }
+    }
 
     loader->WriteRecPoints("OVERWRITE");
     loader->UnloadRecPoints();
@@ -1182,7 +1396,7 @@ Bool_t AliReconstruction::RunVertexFinder(AliESDEvent*& esd)
     AliWarning("no vertex reconstructed");
     vertex = new AliESDVertex(vtxPos, vtxErr);
   }
-  esd->SetVertex(vertex);
+  esd->SetPrimaryVertexSPD(vertex);
   // if SPD multiplicity has been determined, it is stored in the ESD
   AliMultiplicity *mult = fVertexer->GetMultiplicity();
   if(mult)esd->SetMultiplicity(mult);
@@ -1279,32 +1493,23 @@ Bool_t AliReconstruction::RunMuonTracking(AliESDEvent*& esd)
     return kFALSE;
   }
      
-  // create Tracks
-  fLoader[iDet]->LoadTracks("update");
-  fLoader[iDet]->CleanTracks();
-  fLoader[iDet]->MakeTracksContainer();
-
   // read RecPoints
   fLoader[iDet]->LoadRecPoints("read");  
+
   tracker->LoadClusters(fLoader[iDet]->TreeR());
   
   Int_t rv = tracker->Clusters2Tracks(esd);
   
-  fLoader[iDet]->UnloadRecPoints();
-  
   if ( rv )
   {
     AliError(Form("%s Clusters2Tracks failed", fgkDetectorName[iDet]));
     return kFALSE;
   }
   
-  tracker->UnloadClusters();
-  
   fLoader[iDet]->UnloadRecPoints();
 
-  fLoader[iDet]->WriteTracks("OVERWRITE");
-  fLoader[iDet]->UnloadTracks();
-
+  tracker->UnloadClusters();
+  
   delete tracker;
   
   return kTRUE;
@@ -1359,6 +1564,7 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
   }
 
   // pass 2: ALL backwards
+
   for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
     if (!fTracker[iDet]) continue;
     AliDebug(1, Form("%s back propagation", fgkDetectorName[iDet]));
@@ -1378,6 +1584,9 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
     }
 
     // run tracking
+    if (iDet>1) // start filling residuals for the "outer" detectors
+    if (fRunGlobalQA) AliTracker::SetFillResiduals(kTRUE);     
+
     if (fTracker[iDet]->PropagateBack(esd) != 0) {
       AliError(Form("%s backward propagation failed", fgkDetectorName[iDet]));
       //      return kFALSE;
@@ -1398,6 +1607,8 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
     }
     AliSysInfo::AddStamp(Form("Tracking1%s_%d",fgkDetectorName[iDet],eventNr), iDet,3, eventNr);
   }
+  //stop filling residuals for the "outer" detectors
+  if (fRunGlobalQA) AliTracker::SetFillResiduals(kFALSE);     
 
   // write space-points to the ESD in case alignment data output
   // is switched on
@@ -1405,15 +1616,24 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
     WriteAlignmentData(esd);
 
   // pass 3: TRD + TPC + ITS refit inwards
+
   for (Int_t iDet = 2; iDet >= 0; iDet--) {
     if (!fTracker[iDet]) continue;
     AliDebug(1, Form("%s inward refit", fgkDetectorName[iDet]));
 
     // run tracking
+    if (iDet<2) // start filling residuals for TPC and ITS
+    if (fRunGlobalQA) AliTracker::SetFillResiduals(kTRUE);     
+
     if (fTracker[iDet]->RefitInward(esd) != 0) {
       AliError(Form("%s inward refit failed", fgkDetectorName[iDet]));
       //      return kFALSE;
     }
+    // run postprocessing
+    if (fTracker[iDet]->PostProcess(esd) != 0) {
+      AliError(Form("%s postprocessing failed", fgkDetectorName[iDet]));
+      //      return kFALSE;
+    }
     if (fCheckPointLevel > 1) {
       WriteESD(esd, Form("%s.refit", fgkDetectorName[iDet]));
     }
@@ -1424,21 +1644,9 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
     fLoader[iDet]->UnloadRecPoints();
     AliSysInfo::AddStamp(Form("RUnloadCluster%s_%d",fgkDetectorName[iDet],eventNr), iDet,5, eventNr);
   }
-  //
-  // Propagate track to the vertex - if not done by ITS
-  //
-  Int_t ntracks = esd->GetNumberOfTracks();
-  for (Int_t itrack=0; itrack<ntracks; itrack++){
-    const Double_t kRadius  = 3;   // beam pipe radius
-    const Double_t kMaxStep = 5;   // max step
-    const Double_t kMaxD    = 123456;  // max distance to prim vertex
-    Double_t       fieldZ   = AliTracker::GetBz();  //
-    AliESDtrack * track = esd->GetTrack(itrack);
-    if (!track) continue;
-    if (track->IsOn(AliESDtrack::kITSrefit)) continue;
-   AliTracker::PropagateTrackTo(track,kRadius,track->GetMass(),kMaxStep,kTRUE);
-    track->RelateToVertex(esd->GetVertex(),fieldZ, kMaxD);
-  }
+  // stop filling residuals for TPC and ITS
+  if (fRunGlobalQA) AliTracker::SetFillResiduals(kFALSE);     
+
   eventNr++;
   return kTRUE;
 }
@@ -1449,19 +1657,18 @@ Bool_t AliReconstruction::CleanESD(AliESDEvent *esd){
   // Remove the data which are not needed for the physics analysis.
   //
 
-  AliInfo("Cleaning the ESD...");
   Int_t nTracks=esd->GetNumberOfTracks();
-  AliInfo(Form("Number of ESD tracks before cleaning %d",nTracks));
   Int_t nV0s=esd->GetNumberOfV0s();
-  AliInfo(Form("Number of ESD V0s before cleaning %d",nV0s));
+  AliInfo
+  (Form("Number of ESD tracks and V0s before cleaning: %d %d",nTracks,nV0s));
 
   Float_t cleanPars[]={fV0DCAmax,fV0CsPmin,fDmax,fZmax};
   Bool_t rc=esd->Clean(cleanPars);
 
   nTracks=esd->GetNumberOfTracks();
-  AliInfo(Form("Number of ESD tracks after cleaning %d",nTracks));
   nV0s=esd->GetNumberOfV0s();
-  AliInfo(Form("Number of ESD V0s after cleaning %d",nV0s));
+  AliInfo
+  (Form("Number of ESD tracks and V0s after cleaning %d %d",nTracks,nV0s));
 
   return rc;
 }
@@ -1536,6 +1743,8 @@ Bool_t AliReconstruction::FillTriggerESD(AliESDEvent*& esd)
   
   AliInfo("Filling trigger information into the ESD");
 
+  AliCentralTrigger *aCTP = NULL;
+
   if (fRawReader) {
     AliCTPRawStream input(fRawReader);
     if (!input.Next()) {
@@ -1544,12 +1753,19 @@ Bool_t AliReconstruction::FillTriggerESD(AliESDEvent*& esd)
     }
     esd->SetTriggerMask(input.GetClassMask());
     esd->SetTriggerCluster(input.GetClusterMask());
+
+    aCTP = new AliCentralTrigger();
+    TString configstr("");
+    if (!aCTP->LoadConfiguration(configstr)) { // Load CTP config from OCDB
+      AliError("No trigger configuration found in OCDB! The trigger classes information will no be stored in ESD!");
+      return kFALSE;
+    }
   }
   else {
     AliRunLoader *runloader = AliRunLoader::GetRunLoader();
     if (runloader) {
       if (!runloader->LoadTrigger()) {
-       AliCentralTrigger *aCTP = runloader->GetTrigger();
+       aCTP = runloader->GetTrigger();
        esd->SetTriggerMask(aCTP->GetClassMask());
        esd->SetTriggerCluster(aCTP->GetClusterMask());
       }
@@ -1564,6 +1780,21 @@ Bool_t AliReconstruction::FillTriggerESD(AliESDEvent*& esd)
     }
   }
 
+  // Now fill the trigger class names into AliESDRun object
+  AliTriggerConfiguration *config = aCTP->GetConfiguration();
+  if (!config) {
+    AliError("No trigger configuration has been found! The trigger classes information will no be stored in ESD!");
+    return kFALSE;
+  }
+
+  const TObjArray& classesArray = config->GetClasses();
+  Int_t nclasses = classesArray.GetEntriesFast();
+  for( Int_t j=0; j<nclasses; j++ ) {
+    AliTriggerClass* trclass = (AliTriggerClass*)classesArray.At( j );
+    Int_t trindex = (Int_t)TMath::Log2(trclass->GetMask());
+    esd->SetTriggerClass(trclass->GetName(),trindex);
+  }
+
   return kTRUE;
 }
 
@@ -1863,16 +2094,23 @@ void AliReconstruction::CleanUp(TFile* file, TFile* fileOld)
   }
   delete fVertexer;
   fVertexer = NULL;
-  delete fDiamondProfile;
-  fDiamondProfile = NULL;
+  
+  if(!(AliCDBManager::Instance()->GetCacheFlag())) {
+       delete fDiamondProfile;
+       fDiamondProfile = NULL;
+       delete fDiamondProfileTPC;
+       fDiamondProfileTPC = NULL;
+       delete fGRPList;
+       fGRPList = NULL;
+  }
 
-  delete fGRPList;
-  fGRPList = NULL;
 
   delete fRunLoader;
   fRunLoader = NULL;
   delete fRawReader;
   fRawReader = NULL;
+  if (fParentRawReader) delete fParentRawReader;
+  fParentRawReader=NULL;
 
   if (file) {
     file->Close();
@@ -1940,756 +2178,6 @@ void AliReconstruction::WriteESD(AliESDEvent* esd, const char* recStep) const
 }
 
 
-
-
-
-//_____________________________________________________________________________
-void AliReconstruction::ESDFile2AODFile(TFile* esdFile, TFile* aodFile)
-{
-  // write all files from the given esd file to an aod file
-
-  // create an AliAOD object 
-  AliAODEvent *aod = new AliAODEvent();
-  aod->CreateStdContent();
-  
-  // go to the file
-  aodFile->cd();
-  
-  // create the tree
-  TTree *aodTree = new TTree("aodTree", "AliAOD tree");
-  aodTree->Branch(aod->GetList());
-
-  // connect to ESD
-  TTree *t = (TTree*) esdFile->Get("esdTree");
-  AliESDEvent *esd = new AliESDEvent();
-  esd->ReadFromTree(t);
-
-  Int_t nEvents = t->GetEntries();
-
-  // set arrays and pointers
-  Float_t posF[3];
-  Double_t pos[3];
-  Double_t p[3];
-  Double_t p_pos[3];
-  Double_t p_neg[3];
-  Double_t covVtx[6];
-  Double_t covTr[21];
-  Double_t pid[10];
-
-  // loop over events and fill them
-  for (Int_t iEvent = 0; iEvent < nEvents; ++iEvent) {
-    //cout << "event: " << iEvent << endl;
-    t->GetEntry(iEvent);
-
-    // Multiplicity information needed by the header (to be revised!)
-    Int_t nTracks   = esd->GetNumberOfTracks();
-    Int_t nPosTracks = 0;
-    for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) 
-      if (esd->GetTrack(iTrack)->Charge()> 0) nPosTracks++;
-
-    // Access the header
-    AliAODHeader *header = aod->GetHeader();
-
-    // fill the header
-    header->SetRunNumber       (esd->GetRunNumber()       );
-    header->SetBunchCrossNumber(esd->GetBunchCrossNumber());
-    header->SetOrbitNumber     (esd->GetOrbitNumber()     );
-    header->SetPeriodNumber    (esd->GetPeriodNumber()    );
-    header->SetTriggerMask     (esd->GetTriggerMask()     ); 
-    header->SetTriggerCluster  (esd->GetTriggerCluster()  );
-    header->SetEventType       (esd->GetEventType()       );
-    header->SetMagneticField   (esd->GetMagneticField()   );
-    header->SetZDCN1Energy     (esd->GetZDCN1Energy()     );
-    header->SetZDCP1Energy     (esd->GetZDCP1Energy()     );
-    header->SetZDCN2Energy     (esd->GetZDCN2Energy()     );
-    header->SetZDCP2Energy     (esd->GetZDCP2Energy()     );
-    header->SetZDCEMEnergy     (esd->GetZDCEMEnergy()     );
-    header->SetRefMultiplicity   (nTracks);
-    header->SetRefMultiplicityPos(nPosTracks);
-    header->SetRefMultiplicityNeg(nTracks - nPosTracks);
-    header->SetMuonMagFieldScale(-999.); // FIXME
-    header->SetCentrality(-999.);        // FIXME
-
-    Int_t nV0s      = esd->GetNumberOfV0s();
-    Int_t nCascades = esd->GetNumberOfCascades();
-    Int_t nKinks    = esd->GetNumberOfKinks();
-       Int_t nVertices = nV0s + 2*nCascades /*could lead to two vertices, one V0 and the Xi */+ nKinks + 1 /* = prim. vtx*/;    
-       Int_t nJets     = 0;
-    Int_t nCaloClus = esd->GetNumberOfCaloClusters();
-    Int_t nFmdClus  = 0;
-    Int_t nPmdClus  = esd->GetNumberOfPmdTracks();
-   
-    aod->ResetStd(nTracks, nVertices, nV0s+nCascades, nJets, nCaloClus, nFmdClus, nPmdClus);
-    
-    // Array to take into account the tracks already added to the AOD
-    Bool_t * usedTrack = NULL;
-    if (nTracks>0) {
-      usedTrack = new Bool_t[nTracks];
-      for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) usedTrack[iTrack]=kFALSE;
-    }
-    // Array to take into account the V0s already added to the AOD
-    Bool_t * usedV0 = NULL;
-    if (nV0s>0) {
-      usedV0 = new Bool_t[nV0s];
-      for (Int_t iV0=0; iV0<nV0s; ++iV0) usedV0[iV0]=kFALSE;
-    }
-    // Array to take into account the kinks already added to the AOD
-    Bool_t * usedKink = NULL;
-    if (nKinks>0) {
-      usedKink = new Bool_t[nKinks];
-      for (Int_t iKink=0; iKink<nKinks; ++iKink) usedKink[iKink]=kFALSE;
-    }
-    
-    // Access to the AOD container of vertices
-    TClonesArray &vertices = *(aod->GetVertices());
-    Int_t jVertices=0;
-
-    // Access to the AOD container of tracks
-    TClonesArray &tracks = *(aod->GetTracks());
-    Int_t jTracks=0; 
-   
-    // Access to the AOD container of V0s
-    TClonesArray &V0s = *(aod->GetV0s());
-    Int_t jV0s=0;
-    
-    // Add primary vertex. The primary tracks will be defined
-    // after the loops on the composite objects (V0, cascades, kinks)
-    const AliESDVertex *vtx = esd->GetPrimaryVertex();
-      
-    vtx->GetXYZ(pos); // position
-    vtx->GetCovMatrix(covVtx); //covariance matrix
-
-    AliAODVertex * primary = new(vertices[jVertices++])
-      AliAODVertex(pos, covVtx, vtx->GetChi2toNDF(), NULL, -1, AliAODVertex::kPrimary);
-         
-
-    AliAODTrack *aodTrack = 0x0;
-    
-    // Create vertices starting from the most complex objects
-
-    // Cascades
-    for (Int_t nCascade = 0; nCascade < nCascades; ++nCascade) {
-      AliESDcascade *cascade = esd->GetCascade(nCascade);
-      
-      cascade->GetXYZ(pos[0], pos[1], pos[2]);
-      cascade->GetPosCovXi(covVtx);
-     
-      // Add the cascade vertex
-      AliAODVertex * vcascade = new(vertices[jVertices++]) AliAODVertex(pos,
-                                                                       covVtx,
-                                                                       cascade->GetChi2Xi(), // = chi2/NDF since NDF = 2*2-3
-                                                                       primary,
-                                                                       nCascade,
-                                                                       AliAODVertex::kCascade);
-
-      primary->AddDaughter(vcascade); // the cascade 'particle' (represented by a vertex) is added as a daughter to the primary vertex
-
-      // Add the V0 from the cascade. The ESD class have to be optimized...
-      // Now we have to search for the corresponding V0 in the list of V0s
-      // using the indeces of the positive and negative tracks
-
-      Int_t posFromV0 = cascade->GetPindex();
-      Int_t negFromV0 = cascade->GetNindex();
-
-
-      AliESDv0 * v0 = 0x0;
-      Int_t indV0 = -1;
-
-      for (Int_t iV0=0; iV0<nV0s; ++iV0) {
-
-       v0 = esd->GetV0(iV0);
-       Int_t posV0 = v0->GetPindex();
-       Int_t negV0 = v0->GetNindex();
-
-       if (posV0==posFromV0 && negV0==negFromV0) {
-         indV0 = iV0;
-         break;
-       }
-      }
-
-      AliAODVertex * vV0FromCascade = 0x0;
-
-      if (indV0>-1 && !usedV0[indV0]) {
-       
-       // the V0 exists in the array of V0s and is not used
-
-       usedV0[indV0] = kTRUE;
-       
-       v0->GetXYZ(pos[0], pos[1], pos[2]);
-       v0->GetPosCov(covVtx);
-       
-       vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
-                                                                covVtx,
-                                                                v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
-                                                                vcascade,
-                                                                indV0,
-                                                                AliAODVertex::kV0);
-      } else {
-
-       // the V0 doesn't exist in the array of V0s or was used
-       cerr << "Error: event " << iEvent << " cascade " << nCascade
-            << " The V0 " << indV0 
-            << " doesn't exist in the array of V0s or was used!" << endl;
-
-       cascade->GetXYZ(pos[0], pos[1], pos[2]);
-       cascade->GetPosCov(covVtx);
-      
-       vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
-                                                                covVtx,
-                                                                v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
-                                                                vcascade,
-                                                                indV0,
-                                                                AliAODVertex::kV0);
-       vcascade->AddDaughter(vV0FromCascade);
-
-      }
-
-      // Add the positive tracks from the V0
-
-      if (! usedTrack[posFromV0]) {
-
-       usedTrack[posFromV0] = kTRUE;
-
-       AliESDtrack *esdTrack = esd->GetTrack(posFromV0);
-       esdTrack->GetPxPyPz(p_pos);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-       
-       vV0FromCascade->AddDaughter(aodTrack =
-                                   new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(), 
-                                          p_pos, 
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vV0FromCascade,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       cerr << "Error: event " << iEvent << " cascade " << nCascade
-            << " track " << posFromV0 << " has already been used!" << endl;
-      }
-
-      // Add the negative tracks from the V0
-
-      if (!usedTrack[negFromV0]) {
-       
-       usedTrack[negFromV0] = kTRUE;
-       
-       AliESDtrack *esdTrack = esd->GetTrack(negFromV0);
-       esdTrack->GetPxPyPz(p_neg);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-       
-       vV0FromCascade->AddDaughter(aodTrack =
-                new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p_neg,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vV0FromCascade,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       cerr << "Error: event " << iEvent << " cascade " << nCascade
-            << " track " << negFromV0 << " has already been used!" << endl;
-      }
-
-      // add it to the V0 array as well
-      Double_t d0[2] = { -999., -99.};
-      // counting is probably wrong
-      new(V0s[jV0s++]) AliAODv0(vV0FromCascade, -999., -99., p_pos, p_neg, d0); // to be refined
-
-      // Add the bachelor track from the cascade
-
-      Int_t bachelor = cascade->GetBindex();
-      
-      if(!usedTrack[bachelor]) {
-      
-       usedTrack[bachelor] = kTRUE;
-       
-       AliESDtrack *esdTrack = esd->GetTrack(bachelor);
-       esdTrack->GetPxPyPz(p);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-
-       vcascade->AddDaughter(aodTrack =
-               new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vcascade,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-     }
-      else {
-       cerr << "Error: event " << iEvent << " cascade " << nCascade
-            << " track " << bachelor << " has already been used!" << endl;
-      }
-      
-      // Add the primary track of the cascade (if any)
-      
-    } // end of the loop on cascades
-    // V0s
-        
-    for (Int_t nV0 = 0; nV0 < nV0s; ++nV0) {
-
-      if (usedV0[nV0]) continue; // skip if aready added to the AOD
-
-      AliESDv0 *v0 = esd->GetV0(nV0); 
-     
-      v0->GetXYZ(pos[0], pos[1], pos[2]);
-      v0->GetPosCov(covVtx);
-
-      AliAODVertex * vV0 = 
-       new(vertices[jVertices++]) AliAODVertex(pos,
-                                               covVtx,
-                                               v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
-                                               primary,
-                                               nV0,
-                                               AliAODVertex::kV0);
-      primary->AddDaughter(vV0);
-
-      Int_t posFromV0 = v0->GetPindex();
-      Int_t negFromV0 = v0->GetNindex();
-      
-      // Add the positive tracks from the V0
-
-      if (!usedTrack[posFromV0]) {
-       
-       usedTrack[posFromV0] = kTRUE;
-
-       AliESDtrack *esdTrack = esd->GetTrack(posFromV0);
-       esdTrack->GetPxPyPz(p_pos);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-       
-       vV0->AddDaughter(aodTrack =
-               new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(), 
-                                          p_pos, 
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vV0,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       cerr << "Error: event " << iEvent << " V0 " << nV0
-            << " track " << posFromV0 << " has already been used!" << endl;
-      }
-
-      // Add the negative tracks from the V0
-
-      if (!usedTrack[negFromV0]) {
-
-       usedTrack[negFromV0] = kTRUE;
-
-       AliESDtrack *esdTrack = esd->GetTrack(negFromV0);
-       esdTrack->GetPxPyPz(p_neg);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-
-       vV0->AddDaughter(aodTrack =
-                new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p_neg,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vV0,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       cerr << "Error: event " << iEvent << " V0 " << nV0
-            << " track " << negFromV0 << " has already been used!" << endl;
-      }
-
-      // add it to the V0 array as well
-      Double_t d0[2] = { 999., 99.};
-      new(V0s[jV0s++]) AliAODv0(vV0, 999., 99., p_pos, p_neg, d0); // to be refined
-    }
-       V0s.Expand(jV0s);        
-    // end of the loop on V0s
-    
-    // Kinks: it is a big mess the access to the information in the kinks
-    // The loop is on the tracks in order to find the mother and daugther of each kink
-
-
-    for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) {
-
-      AliESDtrack * esdTrack = esd->GetTrack(iTrack);
-
-      Int_t ikink = esdTrack->GetKinkIndex(0);
-
-      if (ikink) {
-       // Negative kink index: mother, positive: daughter
-
-       // Search for the second track of the kink
-
-       for (Int_t jTrack = iTrack+1; jTrack<nTracks; ++jTrack) {
-
-         AliESDtrack * esdTrack1 = esd->GetTrack(jTrack);
-
-         Int_t jkink = esdTrack1->GetKinkIndex(0);
-
-         if ( TMath::Abs(ikink)==TMath::Abs(jkink) ) {
-
-           // The two tracks are from the same kink
-         
-           if (usedKink[TMath::Abs(ikink)-1]) continue; // skip used kinks
-
-           Int_t imother = -1;
-           Int_t idaughter = -1;
-
-           if (ikink<0 && jkink>0) {
-
-             imother = iTrack;
-             idaughter = jTrack;
-           }
-           else if (ikink>0 && jkink<0) {
-
-             imother = jTrack;
-             idaughter = iTrack;
-           }
-           else {
-             cerr << "Error: Wrong combination of kink indexes: "
-             << ikink << " " << jkink << endl;
-             continue;
-           }
-
-           // Add the mother track
-
-           AliAODTrack * mother = NULL;
-
-           if (!usedTrack[imother]) {
-       
-             usedTrack[imother] = kTRUE;
-       
-             AliESDtrack *esdTrack = esd->GetTrack(imother);
-             esdTrack->GetPxPyPz(p);
-             esdTrack->GetXYZ(pos);
-             esdTrack->GetCovarianceXYZPxPyPz(covTr);
-             esdTrack->GetESDpid(pid);
-
-             mother = 
-               new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          primary,
-                                          kTRUE, // check if this is right
-                                          kTRUE, // check if this is right
-                                          AliAODTrack::kPrimary);
-             primary->AddDaughter(mother);
-             mother->ConvertAliPIDtoAODPID();
-           }
-           else {
-             cerr << "Error: event " << iEvent << " kink " << TMath::Abs(ikink)-1
-             << " track " << imother << " has already been used!" << endl;
-           }
-
-           // Add the kink vertex
-           AliESDkink * kink = esd->GetKink(TMath::Abs(ikink)-1);
-
-           AliAODVertex * vkink = 
-           new(vertices[jVertices++]) AliAODVertex(kink->GetPosition(),
-                                                   NULL,
-                                                   0.,
-                                                   mother,
-                                                   esdTrack->GetID(), // This is the track ID of the mother's track!
-                                                   AliAODVertex::kKink);
-           // Add the daughter track
-
-           AliAODTrack * daughter = NULL;
-
-           if (!usedTrack[idaughter]) {
-       
-             usedTrack[idaughter] = kTRUE;
-       
-             AliESDtrack *esdTrack = esd->GetTrack(idaughter);
-             esdTrack->GetPxPyPz(p);
-             esdTrack->GetXYZ(pos);
-             esdTrack->GetCovarianceXYZPxPyPz(covTr);
-             esdTrack->GetESDpid(pid);
-
-             daughter = 
-               new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vkink,
-                                          kTRUE, // check if this is right
-                                          kTRUE, // check if this is right
-                                          AliAODTrack::kPrimary);
-             vkink->AddDaughter(daughter);
-             daughter->ConvertAliPIDtoAODPID();
-           }
-           else {
-             cerr << "Error: event " << iEvent << " kink " << TMath::Abs(ikink)-1
-             << " track " << idaughter << " has already been used!" << endl;
-           }
-         }
-       }
-      }
-    }
-    vertices.Expand(jVertices);
-
-    // Tracks (primary and orphan)
-    for (Int_t nTrack = 0; nTrack < nTracks; ++nTrack) {
-
-      if (usedTrack[nTrack]) continue;
-
-      AliESDtrack *esdTrack = esd->GetTrack(nTrack);
-      esdTrack->GetPxPyPz(p);
-      esdTrack->GetXYZ(pos);
-      esdTrack->GetCovarianceXYZPxPyPz(covTr);
-      esdTrack->GetESDpid(pid);
-
-      Float_t impactXY, impactZ;
-
-      esdTrack->GetImpactParameters(impactXY,impactZ);
-
-      if (impactXY<3.) {
-       // track inside the beam pipe
-      
-       primary->AddDaughter(aodTrack =
-           new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                        esdTrack->GetLabel(),
-                                        p,
-                                        kTRUE,
-                                        pos,
-                                        kFALSE,
-                                        covTr, 
-                                        (Short_t)esdTrack->Charge(),
-                                        esdTrack->GetITSClusterMap(), 
-                                        pid,
-                                        primary,
-                                        kTRUE, // check if this is right
-                                        kTRUE, // check if this is right
-                                        AliAODTrack::kPrimary)
-           );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       // outside the beam pipe: orphan track
-       // Don't write them anymore!
-       continue;
-      }        
-    } // end of loop on tracks
-    
-    // muon tracks
-    Int_t nMuTracks = esd->GetNumberOfMuonTracks();
-    for (Int_t nMuTrack = 0; nMuTrack < nMuTracks; ++nMuTrack) {
-      
-      AliESDMuonTrack *esdMuTrack = esd->GetMuonTrack(nMuTrack);     
-      p[0] = esdMuTrack->Px(); 
-      p[1] = esdMuTrack->Py(); 
-      p[2] = esdMuTrack->Pz();
-      pos[0] = primary->GetX(); 
-      pos[1] = primary->GetY(); 
-      pos[2] = primary->GetZ();
-      
-      // has to be changed once the muon pid is provided by the ESD
-      for (Int_t i = 0; i < 10; pid[i++] = 0.); pid[AliAODTrack::kMuon]=1.;
-      
-      primary->AddDaughter(aodTrack =
-         new(tracks[jTracks++]) AliAODTrack(0, // no ID provided
-                                            0, // no label provided
-                                            p,
-                                            kTRUE,
-                                            pos,
-                                            kFALSE,
-                                            NULL, // no covariance matrix provided
-                                            esdMuTrack->Charge(),
-                                            0, // ITSClusterMap is set below
-                                            pid,
-                                            primary,
-                                            kFALSE,  // muon tracks are not used to fit the primary vtx
-                                            kFALSE,  // not used for vertex fit
-                                            AliAODTrack::kPrimary)
-         );
-
-      aodTrack->SetHitsPatternInTrigCh(esdMuTrack->GetHitsPatternInTrigCh());
-      Int_t track2Trigger = esdMuTrack->GetMatchTrigger();
-      aodTrack->SetMatchTrigger(track2Trigger);
-      if (track2Trigger) 
-       aodTrack->SetChi2MatchTrigger(esdMuTrack->GetChi2MatchTrigger());
-      else 
-       aodTrack->SetChi2MatchTrigger(0.);
-    }
-    tracks.Expand(jTracks); // remove 'empty slots' due to unwritten tracks
-       
-    // Access to the AOD container of PMD clusters
-    TClonesArray &pmdClusters = *(aod->GetPmdClusters());
-    Int_t jPmdClusters=0;
-  
-    for (Int_t iPmd = 0; iPmd < nPmdClus; ++iPmd) {
-      // file pmd clusters, to be revised!
-      AliESDPmdTrack *pmdTrack = esd->GetPmdTrack(iPmd);
-      Int_t nLabel = 0;
-      Int_t *label = 0x0;
-      Double_t pos[3] = { pmdTrack->GetClusterX(), pmdTrack->GetClusterY(), pmdTrack->GetClusterZ() };
-      Double_t pid[9] = { 0., 0., 0., 0., 0., 0., 0., 0., 0. }; // to be revised!
-      // type not set!
-      // assoc cluster not set
-      new(pmdClusters[jPmdClusters++]) AliAODPmdCluster(iPmd, nLabel, label, pmdTrack->GetClusterADC(), pos, pid);
-    }
-
-    // Access to the AOD container of clusters
-    TClonesArray &caloClusters = *(aod->GetCaloClusters());
-    Int_t jClusters=0;
-
-    // Calo Clusters
-    TArrayS EMCCellNumber(15000);
-    TArrayD EMCCellAmplitude(15000);
-    Int_t nEMCCells = 0;
-    const Float_t fEMCAmpScale = 1./500;
-    for (Int_t iClust=0; iClust<nCaloClus; ++iClust) {
-
-      AliESDCaloCluster * cluster = esd->GetCaloCluster(iClust);
-
-      Int_t id = cluster->GetID();
-      Int_t nLabel = 0;
-      Int_t *label = 0x0;
-      Float_t energy = cluster->E();
-      cluster->GetPosition(posF);
-      Char_t ttype=AliAODCluster::kUndef;
-
-      if (cluster->GetClusterType() == AliESDCaloCluster::kPHOSCluster) {
-       ttype=AliAODCluster::kPHOSNeutral;
-      } 
-      else if (cluster->GetClusterType() == AliESDCaloCluster::kEMCALClusterv1) {
-       ttype = AliAODCluster::kEMCALClusterv1;
-      }
-      else if (cluster->GetClusterType() == AliESDCaloCluster::kEMCALPseudoCluster) {
-       // Collect raw tower info
-       for (Int_t iDig = 0; iDig < cluster->GetNumberOfDigits(); iDig++) {
-         EMCCellNumber[nEMCCells] = cluster->GetDigitIndex()->At(iDig);
-         EMCCellAmplitude[nEMCCells] = fEMCAmpScale*cluster->GetDigitAmplitude()->At(iDig);
-         nEMCCells++;
-       }
-       // don't write cluster data (it's just a pseudo cluster, holding the tower information)
-       continue; 
-      }
-      
-      AliAODCaloCluster *caloCluster = new(caloClusters[jClusters++]) AliAODCaloCluster(id,
-                                                                                       nLabel,
-                                                                                       label,
-                                                                                       energy,
-                                                                                       pos,
-                                                                                       NULL,
-                                                                                       ttype);
-      
-      caloCluster->SetCaloCluster(); // to be refined!
-
-    } 
-       caloClusters.Expand(jClusters); // resize TObjArray to 'remove' slots for pseudo clusters        
-       // end of loop on calo clusters
-
-    // fill EMC cell info
-    AliAODCaloCells &EMCCells = *(aod->GetCaloCells());
-    EMCCells.CreateContainer(nEMCCells);
-    EMCCells.SetType(AliAODCaloCells::kEMCAL);
-    for (Int_t iCell = 0; iCell < nEMCCells; iCell++) {      
-      EMCCells.SetCell(iCell,EMCCellNumber[iCell],EMCCellAmplitude[iCell]);
-    }
-    EMCCells.Sort();
-
-    // tracklets    
-    AliAODTracklets &SPDTracklets = *(aod->GetTracklets());
-    const AliMultiplicity *mult = esd->GetMultiplicity();
-    if (mult) {
-      if (mult->GetNumberOfTracklets()>0) {
-       SPDTracklets.CreateContainer(mult->GetNumberOfTracklets());
-
-       for (Int_t n=0; n<mult->GetNumberOfTracklets(); n++) {
-         SPDTracklets.SetTracklet(n, mult->GetTheta(n), mult->GetPhi(n), mult->GetDeltaPhi(n), mult->GetLabel(n));
-       }
-      }
-    } else {
-      Printf("ERROR: AliMultiplicity could not be retrieved from ESD");
-    }
-
-    delete [] usedTrack;
-    delete [] usedV0;
-    delete [] usedKink;
-
-    // fill the tree for this event
-    aodTree->Fill();
-  } // end of event loop
-
-  aodTree->GetUserInfo()->Add(aod);
-
-  // write the tree to the specified file
-  aodFile = aodTree->GetCurrentFile();
-  aodFile->cd();
-  aodTree->Write();
-
-  return;
-}
-
 void AliReconstruction::WriteAlignmentData(AliESDEvent* esd)
 {
   // Write space-points which are then used in the alignment procedures
@@ -2726,10 +2214,14 @@ void AliReconstruction::WriteAlignmentData(AliESDEvent* esd)
          AliTrackPoint p;
          Int_t isp = 0;
          Int_t isp2 = 0;
-         while (isp < nspdet) {
+         while (isp2 < nspdet) {
            Bool_t isvalid;
-           if(IsSelected(fgkDetectorName[iDet],fUseTrackingErrorsForAlignment)) {
-             isvalid = tracker->GetTrackPointTrackingError(idx[isp2],p,track);
+            TString dets = fgkDetectorName[iDet];
+            if ((fUseTrackingErrorsForAlignment.CompareTo(dets) == 0) ||
+            fUseTrackingErrorsForAlignment.BeginsWith(dets+" ") ||
+            fUseTrackingErrorsForAlignment.EndsWith(" "+dets) ||
+            fUseTrackingErrorsForAlignment.Contains(" "+dets+" ")) {
+              isvalid = tracker->GetTrackPointTrackingError(idx[isp2],p,track);
            } else {
              isvalid = tracker->GetTrackPoint(idx[isp2],p); 
            } 
@@ -2816,87 +2308,84 @@ void AliReconstruction::TNamedToFile(TTree* fTree, TString fName){
 
 }
   
+//_____________________________________________________________________________
+AliQADataMakerRec * AliReconstruction::GetQADataMaker(Int_t iDet)
+{
+ // get the quality assurance data maker object and the loader for a detector
 
+  if (fQADataMaker[iDet]) 
+    return fQADataMaker[iDet];
+
+  AliQADataMakerRec * qadm = NULL;
+  if (iDet == fgkNDetectors) { //Global QA
+     qadm = new AliGlobalQADataMaker();
+     fQADataMaker[iDet] = qadm;
+     return qadm;
+  }
+
+  // load the QA data maker object
+  TPluginManager* pluginManager = gROOT->GetPluginManager();
+  TString detName = fgkDetectorName[iDet];
+  TString qadmName = "Ali" + detName + "QADataMakerRec";
+  if (gAlice && !gAlice->GetDetector(detName) && (detName != "HLT")) 
+    return NULL;
+
+  // first check if a plugin is defined for the quality assurance data maker
+  TPluginHandler* pluginHandler = pluginManager->FindHandler("AliQADataMakerRec", detName);
+  // if not, add a plugin for it
+  if (!pluginHandler) {
+    AliDebug(1, Form("defining plugin for %s", qadmName.Data()));
+    TString libs = gSystem->GetLibraries();
+    if (libs.Contains("lib" + detName + "base.so") ||
+       (gSystem->Load("lib" + detName + "base.so") >= 0)) {
+      pluginManager->AddHandler("AliQADataMakerRec", detName, 
+                               qadmName, detName + "qadm", qadmName + "()");
+    } else {
+      pluginManager->AddHandler("AliQADataMakerRec", detName, 
+                               qadmName, detName, qadmName + "()");
+    }
+    pluginHandler = pluginManager->FindHandler("AliQADataMakerRec", detName);
+  }
+  if (pluginHandler && (pluginHandler->LoadPlugin() == 0)) {
+    qadm = (AliQADataMakerRec *) pluginHandler->ExecPlugin(0);
+  }
+
+  fQADataMaker[iDet] = qadm;
+
+  return qadm;
+}
 
 //_____________________________________________________________________________
-//AliQADataMaker * AliReconstruction::GetQADataMaker(Int_t iDet)
-//{
-// get the quality assurance data maker object and the loader for a detector
-//
-//  if (fQADataMaker[iDet]) 
-//    return fQADataMaker[iDet];
-//
-//  // load the QA data maker object
-//  TPluginManager* pluginManager = gROOT->GetPluginManager();
-//  TString detName = fgkDetectorName[iDet];
-//  TString qadmName = "Ali" + detName + "QADataMaker";
-//  if (gAlice && !gAlice->GetDetector(detName) && (detName != "HLT")) 
-//    return NULL;
-//
-//  AliQADataMaker * qadm = NULL;
-//  // first check if a plugin is defined for the quality assurance data maker
-//  TPluginHandler* pluginHandler = pluginManager->FindHandler("AliQADataMaker", detName);
-//  // if not, add a plugin for it
-//  if (!pluginHandler) {
-//    AliDebug(1, Form("defining plugin for %s", qadmName.Data()));
-//    TString libs = gSystem->GetLibraries();
-//    if (libs.Contains("lib" + detName + "base.so") ||
-//     (gSystem->Load("lib" + detName + "base.so") >= 0)) {
-//      pluginManager->AddHandler("AliQADataMaker", detName, 
-//                             qadmName, detName + "qadm", qadmName + "()");
-//    } else {
-//      pluginManager->AddHandler("AliQADataMaker", detName, 
-//                             qadmName, detName, qadmName + "()");
-//    }
-//    pluginHandler = pluginManager->FindHandler("AliQADataMaker", detName);
-//  }
-//  if (pluginHandler && (pluginHandler->LoadPlugin() == 0)) {
-//    qadm = (AliQADataMaker *) pluginHandler->ExecPlugin(0);
-//  }
-//  if (qadm) {
-//    AliInfo(Form("Initializing quality assurance data maker for %s", fgkDetectorName[iDet]));
-//    qadm->Init(AliQA::kRECPOINTS, AliCDBManager::Instance()->GetRun(), GetQACycles(fgkDetectorName[iDet]));
-//    qadm->StartOfCycle(AliQA::kRECPOINTS);
-//    qadm->Init(AliQA::kESDS, AliCDBManager::Instance()->GetRun());
-//    qadm->StartOfCycle(AliQA::kESDS, "same") ;       
-//    fQADataMaker[iDet] = qadm;
-//  }
-//
-//  return qadm;
-//}
-//
-//_____________________________________________________________________________
-//Bool_t AliReconstruction::RunQA(const char* detectors, AliESDEvent *& esd)
-//{
-//  // run the Quality Assurance data producer
-//
-//  AliCodeTimerAuto("")
-//  TString detStr = detectors;
-//  for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
-//   if (!IsSelected(fgkDetectorName[iDet], detStr)) 
-//     continue;
-//   AliQADataMaker * qadm = GetQADataMaker(iDet);
-//   if (!qadm) 
-//     continue;
-//   AliCodeTimerStart(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
-//   AliInfo(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
-//    
-//   qadm->Exec(AliQA::kESDS, esd) ; 
-//   qadm->Increment() ; 
-//
-//   AliCodeTimerStop(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
-// }
-// if ((detStr.CompareTo("ALL") != 0) && !detStr.IsNull()) {
-//   AliError(Form("the following detectors were not found: %s",
-//              detStr.Data()));
-//   if (fStopOnError) 
-//     return kFALSE;
-// }
-// 
-// return kTRUE;
-//  
-//}
-//
+Bool_t AliReconstruction::RunQA(const char* detectors, AliESDEvent *& esd)
+{
+  // run the Quality Assurance data producer
+
+  AliCodeTimerAuto("")
+  TString detStr = detectors;
+  for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
+   if (!IsSelected(fgkDetectorName[iDet], detStr)) 
+     continue;
+   AliQADataMakerRec * qadm = GetQADataMaker(iDet);
+   if (!qadm) 
+     continue;
+   AliCodeTimerStart(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
+   AliInfo(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
+    
+   qadm->Exec(AliQA::kESDS, esd) ; 
+   qadm->Increment() ; 
+
+   AliCodeTimerStop(Form("running quality assurance data maker for %s", fgkDetectorName[iDet]));
+ }
+ if ((detStr.CompareTo("ALL") != 0) && !detStr.IsNull()) {
+   AliError(Form("the following detectors were not found: %s",
+                detStr.Data()));
+   if (fStopOnError) 
+     return kFALSE;
+ }
+ return kTRUE;
+  
+}
 
 //_____________________________________________________________________________
 void AliReconstruction::CheckQA()
@@ -2910,8 +2399,8 @@ void AliReconstruction::CheckQA()
         
        for (Int_t iDet = 0; iDet < AliQA::kNDET; iDet++) {
                TString detName(AliQA::GetDetName(iDet)) ;
-               AliQA * qa = AliQA::Instance(AliQA::DETECTORINDEX(iDet)) ; 
-               if ( qa->IsSet(AliQA::DETECTORINDEX(iDet), AliQA::kSIM, AliQA::kFATAL)) {
+               AliQA * qa = AliQA::Instance(AliQA::DETECTORINDEX_t(iDet)) ; 
+               if ( qa->IsSet(AliQA::DETECTORINDEX_t(iDet), AliQA::kSIM, AliQA::kFATAL)) {
                                AliInfo(Form("QA status for %s in Hits and/or SDIGITS  and/or Digits was Fatal; No reconstruction performed", detName.Data())) ;
                } else {
                        if ( fRunLocalReconstruction.Contains(AliQA::GetDetName(iDet)) || 
@@ -2947,3 +2436,50 @@ Int_t AliReconstruction::GetDetIndex(const char* detector)
   }    
   return index ; 
 }
+//_____________________________________________________________________________
+Bool_t AliReconstruction::FinishPlaneEff() {
+ //
+ // Here execute all the necessary operationis, at the end of the tracking phase,
+ // in case that evaluation of PlaneEfficiencies was required for some detector. 
+ // E.g., write into a DataBase file the PlaneEfficiency which have been evaluated. 
+ //
+ // This Preliminary version works only FOR ITS !!!!!
+ // other detectors (TOF,TRD, etc. have to develop their specific codes)
+ //
+ //  Input: none
+ //  Return: kTRUE if all operations have been done properly, kFALSE otherwise 
+ //
+ Bool_t ret=kFALSE;
+ //for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
+ for (Int_t iDet = 0; iDet < 1; iDet++) { // for the time being only ITS  
+   //if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
+   if(fTracker[iDet]) {
+      AliPlaneEff *planeeff=fTracker[iDet]->GetPlaneEff(); 
+      ret=planeeff->WriteIntoCDB();
+      if(planeeff->GetCreateHistos()) {
+        TString name="PlaneEffHisto";
+        name+=fgkDetectorName[iDet];
+        name+=".root";
+        ret*=planeeff->WriteHistosToFile(name,"RECREATE");
+      }
+   }
+ }
+ return ret;
+}
+//_____________________________________________________________________________
+Bool_t AliReconstruction::InitPlaneEff() {
+//
+ // Here execute all the necessary operations, before of the tracking phase,
+ // for the evaluation of PlaneEfficiencies, in case required for some detectors.
+ // E.g., read from a DataBase file a first evaluation of the PlaneEfficiency 
+ // which should be updated/recalculated.
+ //
+ // This Preliminary version will work only FOR ITS !!!!!
+ // other detectors (TOF,TRD, etc. have to develop their specific codes)
+ //
+ //  Input: none
+ //  Return: kTRUE if all operations have been done properly, kFALSE otherwise
+ //
+ AliWarning(Form("Implementation of this method not yet done !! Method return kTRUE"));
+ return kTRUE;
+}