]> git.uio.no Git - u/mrichter/AliRoot.git/blobdiff - STEER/AliReconstruction.cxx
solved problems with the cycles when running QA during reconstruction
[u/mrichter/AliRoot.git] / STEER / AliReconstruction.cxx
index 77df274d9751d5dd711c448dee5d7714e30cbfd6..a42deaf0d44f27d92b0b2add34c2439dcf480547 100644 (file)
 // The reconstruction requires digits or raw data as input. For the creation //
 // of digits and raw data have a look at the class AliSimulation.            //
 //                                                                           //
+// The input data of a detector can be replaced by the corresponding HLT     //
+// data by calling (usual detector string)                                   //
+// SetUseHLTData("...");                                                     //
+//                                                                           //
 // For debug purposes the method SetCheckPointLevel can be used. If the      //
 // argument is greater than 0, files with ESD events will be written after   //
 // selected steps of the reconstruction for each event:                      //
 #include <TLorentzVector.h>
 #include <TArrayS.h>
 #include <TArrayD.h>
+#include <TObjArray.h>
 
 #include "AliReconstruction.h"
 #include "AliCodeTimer.h"
 #include "AliAlignObj.h"
 
 #include "AliCentralTrigger.h"
+#include "AliTriggerConfiguration.h"
+#include "AliTriggerClass.h"
 #include "AliCTPRawStream.h"
 
-#include "AliAODEvent.h"
-#include "AliAODHeader.h"
-#include "AliAODTrack.h"
-#include "AliAODVertex.h"
-#include "AliAODv0.h"
-#include "AliAODJet.h"
-#include "AliAODCaloCells.h"
-#include "AliAODCaloCluster.h"
-#include "AliAODPmdCluster.h"
-#include "AliAODFmdCluster.h"
-#include "AliAODTracklets.h"
-
 #include "AliQADataMakerRec.h" 
 #include "AliGlobalQADataMaker.h" 
 #include "AliQA.h"
 #include "AliQADataMakerSteer.h"
 
+#include "AliPlaneEff.h"
+
 #include "AliSysInfo.h" // memory snapshots
+#include "AliRawHLTManager.h"
 
 
 ClassImp(AliReconstruction)
@@ -203,6 +201,7 @@ AliReconstruction::AliReconstruction(const char* gAliceFilename,
 
   fUniformField(kTRUE),
   fRunVertexFinder(kTRUE),
+  fRunVertexFinderTracks(kTRUE),
   fRunHLTTracking(kFALSE),
   fRunMuonTracking(kFALSE),
   fRunV0Finder(kTRUE),
@@ -225,6 +224,7 @@ AliReconstruction::AliReconstruction(const char* gAliceFilename,
   fUseTrackingErrorsForAlignment(""),
   fGAliceFileName(gAliceFilename),
   fInput(""),
+  fpEvent(NULL),
   fEquipIdMap(""),
   fFirstEvent(0),
   fLastEvent(-1),
@@ -234,12 +234,15 @@ AliReconstruction::AliReconstruction(const char* gAliceFilename,
   fLoadAlignFromCDB(kTRUE),
   fLoadAlignData("ALL"),
   fESDPar(""),
+  fUseHLTData(),
 
   fRunLoader(NULL),
   fRawReader(NULL),
+  fParentRawReader(NULL),
 
   fVertexer(NULL),
   fDiamondProfile(NULL),
+  fDiamondProfileTPC(NULL),
   fMeanVertexConstraint(kTRUE),
 
   fGRPList(NULL),
@@ -250,8 +253,23 @@ AliReconstruction::AliReconstruction(const char* gAliceFilename,
   fInitCDBCalled(kFALSE),
   fSetRunNumberFromDataCalled(kFALSE),
   fRunQA(kTRUE),  
-  fRunGlobalQA(kFALSE),
-  fInLoopQA(kFALSE)
+  fRunGlobalQA(kTRUE),
+  fInLoopQA(kFALSE),
+  fSameQACycle(kFALSE),
+
+  fRunPlaneEff(kFALSE),
+
+  fesd(NULL),
+  fhltesd(NULL),
+  fesdf(NULL),
+  ffile(NULL),
+  ftree(NULL),
+  fhlttree(NULL),
+  ffileOld(NULL),
+  ftreeOld(NULL),
+  fhlttreeOld(NULL),
+  ftVertexer(NULL),
+  fIsNewRunLoader(kFALSE)
 {
 // create reconstruction object with default parameters
   
@@ -272,6 +290,7 @@ AliReconstruction::AliReconstruction(const AliReconstruction& rec) :
 
   fUniformField(rec.fUniformField),
   fRunVertexFinder(rec.fRunVertexFinder),
+  fRunVertexFinderTracks(rec.fRunVertexFinderTracks),
   fRunHLTTracking(rec.fRunHLTTracking),
   fRunMuonTracking(rec.fRunMuonTracking),
   fRunV0Finder(rec.fRunV0Finder),
@@ -294,6 +313,7 @@ AliReconstruction::AliReconstruction(const AliReconstruction& rec) :
   fUseTrackingErrorsForAlignment(rec.fUseTrackingErrorsForAlignment),
   fGAliceFileName(rec.fGAliceFileName),
   fInput(rec.fInput),
+  fpEvent(rec.fpEvent),
   fEquipIdMap(rec.fEquipIdMap),
   fFirstEvent(rec.fFirstEvent),
   fLastEvent(rec.fLastEvent),
@@ -303,12 +323,15 @@ AliReconstruction::AliReconstruction(const AliReconstruction& rec) :
   fLoadAlignFromCDB(rec.fLoadAlignFromCDB),
   fLoadAlignData(rec.fLoadAlignData),
   fESDPar(rec.fESDPar),
+  fUseHLTData(rec.fUseHLTData),
 
   fRunLoader(NULL),
   fRawReader(NULL),
+  fParentRawReader(NULL),
 
   fVertexer(NULL),
   fDiamondProfile(NULL),
+  fDiamondProfileTPC(NULL),
   fMeanVertexConstraint(rec.fMeanVertexConstraint),
 
   fGRPList(NULL),
@@ -320,7 +343,21 @@ AliReconstruction::AliReconstruction(const AliReconstruction& rec) :
   fSetRunNumberFromDataCalled(rec.fSetRunNumberFromDataCalled),
   fRunQA(rec.fRunQA),  
   fRunGlobalQA(rec.fRunGlobalQA),
-  fInLoopQA(rec.fInLoopQA)
+  fInLoopQA(rec.fInLoopQA),
+  fSameQACycle(rec.fSameQACycle),
+  fRunPlaneEff(rec.fRunPlaneEff),
+
+  fesd(NULL),
+  fhltesd(NULL),
+  fesdf(NULL),
+  ffile(NULL),
+  ftree(NULL),
+  fhlttree(NULL),
+  ffileOld(NULL),
+  ftreeOld(NULL),
+  fhlttreeOld(NULL),
+  ftVertexer(NULL),
+  fIsNewRunLoader(rec.fIsNewRunLoader)
 {
 // copy constructor
 
@@ -475,7 +512,7 @@ Bool_t AliReconstruction::SetRunNumberFromData()
   AliCDBManager* man = AliCDBManager::Instance();
   
   if(man->GetRun() > 0) {
-       AliWarning("Run number is taken from event header! Ignoring settings in AliCDBManager!");
+       AliWarning("Run number is taken from raw-event header! Ignoring settings in AliCDBManager!");
   } 
   
   if (!fRunLoader) {
@@ -492,8 +529,15 @@ Bool_t AliReconstruction::SetRunNumberFromData()
          fRawReader->RewindEvents();
        }
        else {
-         AliError("No raw-data events found !");
-         return kFALSE;
+         if(man->GetRun() > 0) {
+           AliWarning("No raw events is found ! Using settings in AliCDBManager !");
+           man->Print();  
+           return kTRUE;
+         }
+         else {
+           AliWarning("Neither raw events nor settings in AliCDBManager are found !");
+           return kFALSE;
+         }
        }
       }
       else {
@@ -571,6 +615,24 @@ void AliReconstruction::SetGAliceFile(const char* fileName)
   fGAliceFileName = fileName;
 }
 
+//_____________________________________________________________________________
+void AliReconstruction::SetInput(const char* input,void **pEvent) 
+{
+  // In case event pointer is given, we run in an online mode
+  // and the first argument is ignored.
+  // In case event pointer is NULL, we run in a normal
+  // mode over a raw-data file and the first argument points
+  // to the name of that file
+  if (!pEvent) {
+    fInput = input;
+    fpEvent = NULL;
+  }
+  else {
+    fInput = "";
+    fpEvent = pEvent;
+  }
+}
+
 //_____________________________________________________________________________
 void AliReconstruction::SetOption(const char* detector, const char* option)
 {
@@ -581,37 +643,76 @@ void AliReconstruction::SetOption(const char* detector, const char* option)
   fOptions.Add(new TNamed(detector, option));
 }
 
-
 //_____________________________________________________________________________
-Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
+Bool_t AliReconstruction::Run(const char* input)
 {
-// run the reconstruction
+  // Run Run Run
+  AliCodeTimerAuto("");
 
-  AliCodeTimerAuto("")
+  if (!InitRun(input)) return kFALSE;
   
-  // set the input
-  if (!IsOnline) {
-    if (!input) input = fInput.Data();
-    TString fileName(input);
-    if (fileName.EndsWith("/")) {
-      fRawReader = new AliRawReaderFile(fileName);
-    } else if (fileName.EndsWith(".root")) {
-      fRawReader = new AliRawReaderRoot(fileName);
-    } else if (!fileName.IsNull()) {
-      fRawReader = new AliRawReaderDate(fileName);
+  //******* The loop over events
+  Int_t iEvent = 0;
+  while ((iEvent < fRunLoader->GetNumberOfEvents()) ||
+        (fRawReader && fRawReader->NextEvent())) {
+    if (!RunEvent(iEvent)) return kFALSE;
+    iEvent++;
+  }
+
+  if (!FinishRun()) return kFALSE;
+
+  return kTRUE;
+}
+
+//_____________________________________________________________________________
+Bool_t AliReconstruction::InitRun(const char* input, void **pEvent)
+{
+  // Initialize all the stuff before
+  // going into the event loop
+  // If the second argument is given, the first one is ignored and
+  // the reconstruction works in an online mode
+  AliCodeTimerAuto("");
+
+  if (pEvent) fpEvent = pEvent;
+  if (input) fInput = input;
+
+  // set the input in case of raw data
+  if (!fInput.IsNull() || fpEvent) {
+    if (!fInput.IsNull()) {
+      AliInfo(Form("Reconstruction will run over a raw-data file: %s",fInput.Data()));
+      TString fileName(fInput);
+      if (fInput.EndsWith("/")) {
+       fRawReader = new AliRawReaderFile(fInput);
+      } else if (fInput.EndsWith(".root")) {
+       fRawReader = new AliRawReaderRoot(fInput);
+      } else {
+       fRawReader = new AliRawReaderDate(fInput);
+      }
+    }
+    else {
+      AliInfo(Form("Reconstruction will run over an event in memory at: %p",*fpEvent));
+      fRawReader = new AliRawReaderDate((void *)(*fpEvent));
     }
   }
   else {
-    if (!input) {
-      AliError("Null pointer to the event structure!");
-      return kFALSE;
-    }
-    fRawReader = new AliRawReaderDate((void *)input);
+    AliInfo("Reconstruction will run over digits");
   }
 
   if (!fEquipIdMap.IsNull() && fRawReader)
     fRawReader->LoadEquipmentIdsMap(fEquipIdMap);
 
+  if (!fUseHLTData.IsNull()) {
+    // create the RawReaderHLT which performs redirection of HLT input data for
+    // the specified detectors
+    AliRawReader* pRawReader=AliRawHLTManager::CreateRawReaderHLT(fRawReader, fUseHLTData.Data());
+    if (pRawReader) {
+      fParentRawReader=fRawReader;
+      fRawReader=pRawReader;
+    } else {
+      AliError(Form("can not create Raw Reader for HLT input %s", fUseHLTData.Data()));
+    }
+  }
+
    AliSysInfo::AddStamp("Start");
   // get the run loader
   if (!InitRunLoader()) return kFALSE;
@@ -640,9 +741,12 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
   if (!MisalignGeometry(fLoadAlignData)) if (fStopOnError) return kFALSE;
    AliSysInfo::AddStamp("LoadGeom");
 
-  //QA 
+  //QA
   AliQADataMakerSteer qas ; 
-  if (fRunQA && fRawReader) qas.Run(fRunLocalReconstruction, fRawReader) ; 
+  if (fRunQA && fRawReader) { 
+    qas.Run(fRunLocalReconstruction, fRawReader) ; 
+       fSameQACycle = kTRUE ; 
+  }
   // checking the QA of previous steps
   //CheckQA() ; 
  
@@ -674,37 +778,35 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
    AliSysInfo::AddStamp("LoadTrackers");
 
   // get the possibly already existing ESD file and tree
-  AliESDEvent* esd = new AliESDEvent(); AliESDEvent* hltesd = new AliESDEvent();
-  TFile* fileOld = NULL;
-  TTree* treeOld = NULL; TTree *hlttreeOld = NULL;
+  fesd = new AliESDEvent(); fhltesd = new AliESDEvent();
   if (!gSystem->AccessPathName("AliESDs.root")){
     gSystem->CopyFile("AliESDs.root", "AliESDs.old.root", kTRUE);
-    fileOld = TFile::Open("AliESDs.old.root");
-    if (fileOld && fileOld->IsOpen()) {
-      treeOld = (TTree*) fileOld->Get("esdTree");
-      if (treeOld)esd->ReadFromTree(treeOld);
-      hlttreeOld = (TTree*) fileOld->Get("HLTesdTree");
-      if (hlttreeOld)  hltesd->ReadFromTree(hlttreeOld);
+    ffileOld = TFile::Open("AliESDs.old.root");
+    if (ffileOld && ffileOld->IsOpen()) {
+      ftreeOld = (TTree*) ffileOld->Get("esdTree");
+      if (ftreeOld)fesd->ReadFromTree(ftreeOld);
+      fhlttreeOld = (TTree*) ffileOld->Get("HLTesdTree");
+      if (fhlttreeOld) fhltesd->ReadFromTree(fhlttreeOld);
     }
   }
 
   // create the ESD output file and tree
-  TFile* file = TFile::Open("AliESDs.root", "RECREATE");
-  file->SetCompressionLevel(2);
-  if (!file->IsOpen()) {
+  ffile = TFile::Open("AliESDs.root", "RECREATE");
+  ffile->SetCompressionLevel(2);
+  if (!ffile->IsOpen()) {
     AliError("opening AliESDs.root failed");
-    if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}    
+    if (fStopOnError) {CleanUp(ffile, ffileOld); return kFALSE;}    
   }
 
-  TTree* tree = new TTree("esdTree", "Tree with ESD objects");
-  esd = new AliESDEvent();
-  esd->CreateStdContent();
-  esd->WriteToTree(tree);
+  ftree = new TTree("esdTree", "Tree with ESD objects");
+  fesd = new AliESDEvent();
+  fesd->CreateStdContent();
+  fesd->WriteToTree(ftree);
 
-  TTree* hlttree = new TTree("HLTesdTree", "Tree with HLT ESD objects");
-  hltesd = new AliESDEvent();
-  hltesd->CreateStdContent();
-  hltesd->WriteToTree(hlttree);
+  fhlttree = new TTree("HLTesdTree", "Tree with HLT ESD objects");
+  fhltesd = new AliESDEvent();
+  fhltesd->CreateStdContent();
+  fhltesd->WriteToTree(fhlttree);
 
   /* CKB Why?
   delete esd; delete hltesd;
@@ -714,12 +816,11 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
 
 
 
-  AliESDfriend *esdf = 0; 
   if (fWriteESDfriend) {
-    esdf = new AliESDfriend();
-    TBranch *br=tree->Branch("ESDfriend.","AliESDfriend", &esdf);
+    fesdf = new AliESDfriend();
+    TBranch *br=ftree->Branch("ESDfriend.","AliESDfriend", &fesdf);
     br->SetFile("AliESDfriends.root");
-    esd->AddObject(esdf);
+    fesd->AddObject(fesdf);
   }
 
   
@@ -742,8 +843,18 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
        AliError("No diamond profile found in OCDB!");
   }
 
-  AliVertexerTracks tVertexer(AliTracker::GetBz());
-  if(fDiamondProfile && fMeanVertexConstraint) tVertexer.SetVtxStart(fDiamondProfile);
+  entry = 0;
+  entry = AliCDBManager::Instance()
+       ->Get("GRP/Calib/MeanVertexTPC");
+       
+  if(entry) {
+       fDiamondProfileTPC = dynamic_cast<AliESDVertex*> (entry->GetObject());  
+  } else {
+       AliError("No diamond profile found in OCDB!");
+  }
+
+  ftVertexer = new AliVertexerTracks(AliTracker::GetBz());
+  if(fDiamondProfile && fMeanVertexConstraint) ftVertexer->SetVtxStart(fDiamondProfile);
 
   if (fRawReader) fRawReader->RewindEvents();
 
@@ -764,57 +875,86 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
         qadm->Init(AliQA::kRECPOINTS, AliCDBManager::Instance()->GetRun());
         qadm->Init(AliQA::kESDS, AliCDBManager::Instance()->GetRun());
         if (!fInLoopQA) {
-           qadm->StartOfCycle(AliQA::kRECPOINTS);
-           qadm->StartOfCycle(AliQA::kESDS,"same");
-        }
-     }
-     if (fRunGlobalQA) {
-        AliQADataMakerRec *qadm = GetQADataMaker(fgkNDetectors);
-       AliInfo(Form("Initializing the global QA data maker"));
-        TObjArray *arr=
-          qadm->Init(AliQA::kRECPOINTS, AliCDBManager::Instance()->GetRun());
-       AliTracker::SetResidualsArray(arr);
-        if (!fInLoopQA) {
-           qadm->StartOfCycle(AliQA::kRECPOINTS);
+                       qadm->StartOfCycle(AliQA::kRECPOINTS, fSameQACycle);
+                       qadm->StartOfCycle(AliQA::kESDS,"same");
         }
      }
+         if (fRunGlobalQA) {
+                 AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
+                 AliInfo(Form("Initializing the global QA data maker"));
+                 TObjArray *arr=
+                       qadm->Init(AliQA::kRECPOINTS, AliCDBManager::Instance()->GetRun());
+                 AliTracker::SetResidualsArray(arr);
+                 qadm->Init(AliQA::kESDS, AliCDBManager::Instance()->GetRun());
+                 if (!fInLoopQA) {
+                         qadm->StartOfCycle(AliQA::kRECPOINTS, fSameQACycle);
+                         qadm->StartOfCycle(AliQA::kESDS, "same");
+                 }
+         }
+         if (!fInLoopQA) 
+                 fSameQACycle = kTRUE; 
   }
 
+  //Initialize the Plane Efficiency framework
+  if (fRunPlaneEff && !InitPlaneEff()) {
+    if(fStopOnError) {CleanUp(ffile, ffileOld); return kFALSE;}
+  }
 
-  //******* The loop over events
-  for (Int_t iEvent = 0; iEvent < fRunLoader->GetNumberOfEvents(); iEvent++) {
-    if (fRawReader) fRawReader->NextEvent();
-    if ((iEvent < fFirstEvent) || ((fLastEvent >= 0) && (iEvent > fLastEvent))) {
-      // copy old ESD to the new one
-      if (treeOld) {
-       esd->ReadFromTree(treeOld);
-       treeOld->GetEntry(iEvent);
-      }
-      tree->Fill();
-      if (hlttreeOld) {
-       esd->ReadFromTree(hlttreeOld);
-       hlttreeOld->GetEntry(iEvent);
-      }
-      hlttree->Fill();
-      continue;
+  return kTRUE;
+}
+
+//_____________________________________________________________________________
+Bool_t AliReconstruction::RunEvent(Int_t iEvent)
+{
+  // run the reconstruction over a single event
+  // The event loop is steered in Run method
+
+  AliCodeTimerAuto("");
+
+  if (iEvent >= fRunLoader->GetNumberOfEvents()) {
+    fRunLoader->SetEventNumber(iEvent);
+    fRunLoader->GetHeader()->Reset(fRawReader->GetRunNumber(), 
+                                  iEvent, iEvent);
+    //??      fRunLoader->MakeTree("H");
+    fRunLoader->TreeE()->Fill();
+  }
+
+  if ((iEvent < fFirstEvent) || ((fLastEvent >= 0) && (iEvent > fLastEvent))) {
+    // copy old ESD to the new one
+    if (ftreeOld) {
+      fesd->ReadFromTree(ftreeOld);
+      ftreeOld->GetEntry(iEvent);
+      ftree->Fill();
     }
-    
-    AliInfo(Form("processing event %d", iEvent));
+    if (fhlttreeOld) {
+      fesd->ReadFromTree(fhlttreeOld);
+      fhlttreeOld->GetEntry(iEvent);
+      fhlttree->Fill();
+    }
+    return kTRUE;
+  }
+
+  AliInfo(Form("processing event %d", iEvent));
 
     //Start of cycle for the in-loop QA
-    if (fRunQA && fInLoopQA) {
-       TString detStr(fFillESD); 
-       for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
-          if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
-          AliQADataMakerRec *qadm = GetQADataMaker(iDet);  
-          if (!qadm) continue;
-          qadm->StartOfCycle(AliQA::kRECPOINTS);
-          qadm->StartOfCycle(AliQA::kESDS, "same") ;   
-       }
-       if (fRunGlobalQA) {
-          AliQADataMakerRec *qadm = GetQADataMaker(fgkNDetectors);
-          qadm->StartOfCycle(AliQA::kRECPOINTS);
-       }
+    if (fInLoopQA) {
+       if (fRunQA) {
+          TString detStr(fFillESD); 
+          for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
+             if (!IsSelected(fgkDetectorName[iDet], detStr)) 
+                                continue;
+             AliQADataMakerRec *qadm = GetQADataMaker(iDet);  
+             if (!qadm) 
+                                continue;
+             qadm->StartOfCycle(AliQA::kRECPOINTS, fSameQACycle);
+             qadm->StartOfCycle(AliQA::kESDS, "same") ;        
+          }
+                  if (fRunGlobalQA) {
+                          AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
+                          qadm->StartOfCycle(AliQA::kRECPOINTS, fSameQACycle);
+                          qadm->StartOfCycle(AliQA::kESDS, "same");
+                  }               
+          }
     }
 
     fRunLoader->GetEvent(iEvent);
@@ -823,45 +963,45 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
     sprintf(aFileName, "ESD_%d.%d_final.root", 
            fRunLoader->GetHeader()->GetRun(), 
            fRunLoader->GetHeader()->GetEventNrInRun());
-    if (!gSystem->AccessPathName(aFileName)) continue;
+    if (!gSystem->AccessPathName(aFileName)) return kTRUE;
 
     // local signle event reconstruction
     if (!fRunLocalReconstruction.IsNull()) {
       if (!RunLocalEventReconstruction(fRunLocalReconstruction)) {
-       if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
+       if (fStopOnError) {CleanUp(ffile, ffileOld); return kFALSE;}
       }
     }
 
-    esd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
-    hltesd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
-    esd->SetEventNumberInFile(fRunLoader->GetHeader()->GetEventNrInRun());
-    hltesd->SetEventNumberInFile(fRunLoader->GetHeader()->GetEventNrInRun());
+    fesd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
+    fhltesd->SetRunNumber(fRunLoader->GetHeader()->GetRun());
+    fesd->SetEventNumberInFile(fRunLoader->GetHeader()->GetEventNrInRun());
+    fhltesd->SetEventNumberInFile(fRunLoader->GetHeader()->GetEventNrInRun());
     
     // Set magnetic field from the tracker
-    esd->SetMagneticField(AliTracker::GetBz());
-    hltesd->SetMagneticField(AliTracker::GetBz());
+    fesd->SetMagneticField(AliTracker::GetBz());
+    fhltesd->SetMagneticField(AliTracker::GetBz());
 
     
     
     // Fill raw-data error log into the ESD
-    if (fRawReader) FillRawDataErrorLog(iEvent,esd);
+    if (fRawReader) FillRawDataErrorLog(iEvent,fesd);
 
     // vertex finder
     if (fRunVertexFinder) {
-      if (!ReadESD(esd, "vertex")) {
-       if (!RunVertexFinder(esd)) {
-         if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
+      if (!ReadESD(fesd, "vertex")) {
+       if (!RunVertexFinder(fesd)) {
+         if (fStopOnError) {CleanUp(ffile, ffileOld); return kFALSE;}
        }
-       if (fCheckPointLevel > 0) WriteESD(esd, "vertex");
+       if (fCheckPointLevel > 0) WriteESD(fesd, "vertex");
       }
     }
 
     // HLT tracking
     if (!fRunTracking.IsNull()) {
       if (fRunHLTTracking) {
-       hltesd->SetVertex(esd->GetVertex());
-       if (!RunHLTTracking(hltesd)) {
-         if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
+       fhltesd->SetPrimaryVertexSPD(fesd->GetVertex());
+       if (!RunHLTTracking(fhltesd)) {
+         if (fStopOnError) {CleanUp(ffile, ffileOld); return kFALSE;}
        }
       }
     }
@@ -869,136 +1009,256 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
     // Muon tracking
     if (!fRunTracking.IsNull()) {
       if (fRunMuonTracking) {
-       if (!RunMuonTracking(esd)) {
-         if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
+       if (!RunMuonTracking(fesd)) {
+         if (fStopOnError) {CleanUp(ffile, ffileOld); return kFALSE;}
        }
       }
     }
 
     // barrel tracking
     if (!fRunTracking.IsNull()) {
-      if (!ReadESD(esd, "tracking")) {
-       if (!RunTracking(esd)) {
-         if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
+      if (!ReadESD(fesd, "tracking")) {
+       if (!RunTracking(fesd)) {
+         if (fStopOnError) {CleanUp(ffile, ffileOld); return kFALSE;}
        }
-       if (fCheckPointLevel > 0) WriteESD(esd, "tracking");
+       if (fCheckPointLevel > 0) WriteESD(fesd, "tracking");
       }
     }
 
     // fill ESD
     if (!fFillESD.IsNull()) {
-      if (!FillESD(esd, fFillESD)) {
-       if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
+      if (!FillESD(fesd, fFillESD)) {
+       if (fStopOnError) {CleanUp(ffile, ffileOld); return kFALSE;}
       }
     }
   
     // fill Event header information from the RawEventHeader
-    if (fRawReader){FillRawEventHeaderESD(esd);}
+    if (fRawReader){FillRawEventHeaderESD(fesd);}
 
     // combined PID
-    AliESDpid::MakePID(esd);
-    if (fCheckPointLevel > 1) WriteESD(esd, "PID");
+    AliESDpid::MakePID(fesd);
+    if (fCheckPointLevel > 1) WriteESD(fesd, "PID");
 
     if (fFillTriggerESD) {
-      if (!ReadESD(esd, "trigger")) {
-       if (!FillTriggerESD(esd)) {
-         if (fStopOnError) {CleanUp(file, fileOld); return kFALSE;}
+      if (!ReadESD(fesd, "trigger")) {
+       if (!FillTriggerESD(fesd)) {
+         if (fStopOnError) {CleanUp(ffile, ffileOld); return kFALSE;}
        }
-       if (fCheckPointLevel > 1) WriteESD(esd, "trigger");
+       if (fCheckPointLevel > 1) WriteESD(fesd, "trigger");
       }
     }
 
-    file->cd();
+    ffile->cd();
+
+    //
+    // Propagate track to the beam pipe  (if not laready done by ITS)
+    //
+    const Int_t ntracks = fesd->GetNumberOfTracks();
+    const Double_t kBz = fesd->GetMagneticField();
+    const Double_t kRadius  = 2.8; //something less than the beam pipe radius
+
+    TObjArray trkArray;
+    UShort_t *selectedIdx=new UShort_t[ntracks];
+
+    for (Int_t itrack=0; itrack<ntracks; itrack++){
+      const Double_t kMaxStep = 5;   //max step over the material
+      Bool_t ok;
+
+      AliESDtrack *track = fesd->GetTrack(itrack);
+      if (!track) continue;
+
+      AliExternalTrackParam *tpcTrack =
+           (AliExternalTrackParam *)track->GetTPCInnerParam();
+      ok = kFALSE;
+      if (tpcTrack)
+       ok = AliTracker::
+         PropagateTrackTo(tpcTrack,kRadius,track->GetMass(),kMaxStep,kTRUE);
+
+
+
+      if (ok) {
+       Int_t n=trkArray.GetEntriesFast();
+        selectedIdx[n]=track->GetID();
+        trkArray.AddLast(tpcTrack);
+      }
+
+      if (track->GetX() < kRadius) continue;
 
-    //Try to improve the reconstructed primary vertex position using the tracks
-    AliESDVertex *pvtx=0;
-    Bool_t dovertex=kTRUE;
-    TObject* obj = fOptions.FindObject("ITS");
+      ok = AliTracker::
+           PropagateTrackTo(track,kRadius,track->GetMass(),kMaxStep,kTRUE);
+      if (ok) {
+         track->RelateToVertex(fesd->GetPrimaryVertexSPD(), kBz, kRadius);
+      }
+    }
+
+    //
+    // Improve the reconstructed primary vertex position using the tracks
+    //
+    TObject *obj = fOptions.FindObject("ITS");
     if (obj) {
       TString optITS = obj->GetTitle();
       if (optITS.Contains("cosmics") || optITS.Contains("COSMICS")) 
-       dovertex=kFALSE;
+       fRunVertexFinderTracks=kFALSE;
+    }
+    if (fRunVertexFinderTracks) {
+       // TPC + ITS primary vertex
+       ftVertexer->SetITSrefitRequired();
+       if(fDiamondProfile && fMeanVertexConstraint) {
+        ftVertexer->SetVtxStart(fDiamondProfile);
+       } else {
+        ftVertexer->SetConstraintOff();
+       }
+       AliESDVertex *pvtx=ftVertexer->FindPrimaryVertex(fesd);
+       if (pvtx) {
+          if (pvtx->GetStatus()) {
+             fesd->SetPrimaryVertex(pvtx);
+             for (Int_t i=0; i<ntracks; i++) {
+                AliESDtrack *t = fesd->GetTrack(i);
+                 t->RelateToVertex(pvtx, kBz, kRadius);
+             } 
+          }
+       }
+
+       // TPC-only primary vertex
+       ftVertexer->SetITSrefitNotRequired();
+       if(fDiamondProfileTPC && fMeanVertexConstraint) {
+        ftVertexer->SetVtxStart(fDiamondProfileTPC);
+       } else {
+        ftVertexer->SetConstraintOff();
+       }
+       pvtx=ftVertexer->FindPrimaryVertex(&trkArray,selectedIdx);
+       if (pvtx) {
+          if (pvtx->GetStatus()) {
+             fesd->SetPrimaryVertexTPC(pvtx);
+             Int_t nsel=trkArray.GetEntriesFast();
+             for (Int_t i=0; i<nsel; i++) {
+                AliExternalTrackParam *t = 
+                   (AliExternalTrackParam *)trkArray.UncheckedAt(i);
+                 t->PropagateToDCA(pvtx, kBz, kRadius);
+             } 
+          }
+       }
+
     }
-    if(dovertex) pvtx=tVertexer.FindPrimaryVertex(esd);
-    if(fDiamondProfile) esd->SetDiamond(fDiamondProfile);
+    delete[] selectedIdx;
+
+    if(fDiamondProfile) fesd->SetDiamond(fDiamondProfile);
     
-    if (pvtx)
-    if (pvtx->GetStatus()) {
-       // Store the improved primary vertex
-       esd->SetPrimaryVertex(pvtx);
-       // Propagate the tracks to the DCA to the improved primary vertex
-       Double_t somethingbig = 777.;
-       Double_t bz = esd->GetMagneticField();
-       Int_t nt=esd->GetNumberOfTracks();
-       while (nt--) {
-        AliESDtrack *t = esd->GetTrack(nt);
-         t->RelateToVertex(pvtx, bz, somethingbig);
-       } 
-    }
 
     if (fRunV0Finder) {
        // V0 finding
        AliV0vertexer vtxer;
-       vtxer.Tracks2V0vertices(esd);
+       vtxer.Tracks2V0vertices(fesd);
 
        if (fRunCascadeFinder) {
           // Cascade finding
           AliCascadeVertexer cvtxer;
-          cvtxer.V0sTracks2CascadeVertices(esd);
+          cvtxer.V0sTracks2CascadeVertices(fesd);
        }
     }
  
     // write ESD
-    if (fCleanESD) CleanESD(esd);
+    if (fCleanESD) CleanESD(fesd);
+
+    if (fRunGlobalQA) {
+       AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
+       if (qadm) qadm->Exec(AliQA::kESDS, fesd);
+    }
+
     if (fWriteESDfriend) {
-      esdf->~AliESDfriend();
-      new (esdf) AliESDfriend(); // Reset...
-      esd->GetESDfriend(esdf);
+      fesdf->~AliESDfriend();
+      new (fesdf) AliESDfriend(); // Reset...
+      fesd->GetESDfriend(fesdf);
     }
-    tree->Fill();
+    ftree->Fill();
 
     // write HLT ESD
-    hlttree->Fill();
+    fhlttree->Fill();
 
-    if (fCheckPointLevel > 0)  WriteESD(esd, "final"); 
-    esd->Reset();
-    hltesd->Reset();
+    if (fCheckPointLevel > 0)  WriteESD(fesd, "final"); 
+    fesd->Reset();
+    fhltesd->Reset();
     if (fWriteESDfriend) {
-      esdf->~AliESDfriend();
-      new (esdf) AliESDfriend(); // Reset...
+      fesdf->~AliESDfriend();
+      new (fesdf) AliESDfriend(); // Reset...
     }
  
+    ProcInfo_t ProcInfo;
     gSystem->GetProcInfo(&ProcInfo);
     AliInfo(Form("Event %d -> Current memory usage %d %d",iEvent, ProcInfo.fMemResident, ProcInfo.fMemVirtual));
   
 
   // End of cycle for the in-loop QA
-     if (fRunQA && fInLoopQA) {
-        RunQA(fFillESD.Data(), esd);
-        TString detStr(fFillESD); 
-        for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
-          if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
-          AliQADataMakerRec * qadm = GetQADataMaker(iDet);
-          if (!qadm) continue;
-          qadm->EndOfCycle(AliQA::kRECPOINTS);
-          qadm->EndOfCycle(AliQA::kESDS);
-          qadm->Finish();
+     if (fInLoopQA) {
+        if (fRunQA) {
+           RunQA(fFillESD.Data(), fesd);
+           TString detStr(fFillESD); 
+           for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
+                          if (!IsSelected(fgkDetectorName[iDet], detStr)) 
+                                  continue;
+                          AliQADataMakerRec * qadm = GetQADataMaker(iDet);
+                          if (!qadm) 
+                                  continue;
+                          qadm->EndOfCycle(AliQA::kRECPOINTS);
+                          qadm->EndOfCycle(AliQA::kESDS);
+                          qadm->Finish();
+                  }
         }
         if (fRunGlobalQA) {
-           AliQADataMakerRec *qadm = GetQADataMaker(fgkNDetectors);
+           AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
            if (qadm) {
              qadm->EndOfCycle(AliQA::kRECPOINTS);
+             qadm->EndOfCycle(AliQA::kESDS);
              qadm->Finish();
           }
         }
      }
-  } 
-  //******** End of the loop over events 
 
+     return kTRUE;
+}
 
+//_____________________________________________________________________________
+Bool_t AliReconstruction::AddEventAndRun()
+{
+  // for online usage only
+  // Add an event to the run-loader
+  // and
+  // re-creates AliRawReaderDate for this new event
+  AliCodeTimerAuto("");
+
+  if (!fpEvent) {
+    AliError("No raw-data event in memory given as an input! Do nothing!");
+    return kFALSE;
+  }
+
+  // New raw-reader. Could be redone in a better way... To do
+  fRawReader->~AliRawReader();
+  new (fRawReader) AliRawReaderDate((void*)(*fpEvent));
+  if (!fRawReader->NextEvent()) return kFALSE;
 
-  tree->GetUserInfo()->Add(esd);
-  hlttree->GetUserInfo()->Add(hltesd);
+  // Expand the number of events in the run-loader
+
+  Int_t nEvents = fRunLoader->GetNumberOfEvents();
+
+  return RunEvent(nEvents);
+}
+
+//_____________________________________________________________________________
+Bool_t AliReconstruction::FinishRun()
+{
+  // Finalize the run
+  // Called after the exit
+  // from the event loop
+  AliCodeTimerAuto("");
+
+  if (fIsNewRunLoader) { // galice.root didn't exist
+    fRunLoader->WriteHeader("OVERWRITE");
+    fRunLoader->CdGAFile();
+    fRunLoader->Write(0, TObject::kOverwrite);
+  }
+
+  ftree->GetUserInfo()->Add(fesd);
+  fhlttree->GetUserInfo()->Add(fhltesd);
   
   const TMap *cdbMap = AliCDBManager::Instance()->GetStorageMap();      
   const TList *cdbList = AliCDBManager::Instance()->GetRetrievedIds();  
@@ -1026,34 +1286,35 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
          cdbListCopy->Add(new TObjString(id->ToString().Data()));       
    }    
         
-   tree->GetUserInfo()->Add(cdbMapCopy);        
-   tree->GetUserInfo()->Add(cdbListCopy);
+   ftree->GetUserInfo()->Add(cdbMapCopy);       
+   ftree->GetUserInfo()->Add(cdbListCopy);
 
 
   if(fESDPar.Contains("ESD.par")){
     AliInfo("Attaching ESD.par to Tree");
     TNamed *fn = CopyFileToTNamed(fESDPar.Data(),"ESD.par");
-    tree->GetUserInfo()->Add(fn);
+    ftree->GetUserInfo()->Add(fn);
   }
 
 
-  file->cd();
+  ffile->cd();
 
   if (fWriteESDfriend)
-    tree->SetBranchStatus("ESDfriend*",0);
+    ftree->SetBranchStatus("ESDfriend*",0);
   // we want to have only one tree version number
-  tree->Write(tree->GetName(),TObject::kOverwrite);
-  hlttree->Write();
+  ftree->Write(ftree->GetName(),TObject::kOverwrite);
+  fhlttree->Write();
+
+// Finish with Plane Efficiency evaluation: before of CleanUp !!!
+  if (fRunPlaneEff && !FinishPlaneEff()) {
+   AliWarning("Finish PlaneEff evaluation failed");
+  }
 
   gROOT->cd();
-  CleanUp(file, fileOld);
+  CleanUp(ffile, ffileOld);
     
   if (fWriteAOD) {
-    TFile *esdFile = TFile::Open("AliESDs.root", "READONLY");
-    TFile *aodFile = TFile::Open("AliAOD.root", "RECREATE");
-    ESDFile2AODFile(esdFile, aodFile);
-    aodFile->Close();
-    esdFile->Close();
+    AliWarning("AOD creation not supported anymore during reconstruction. See ANALYSIS/AliAnalysisTaskESDfilter.cxx instead.");
   }
 
   // Create tags for the events in the ESD tree (the ESD tree is always present)
@@ -1061,20 +1322,22 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
   AliESDTagCreator *esdtagCreator = new AliESDTagCreator();
   esdtagCreator->CreateESDTags(fFirstEvent,fLastEvent,fGRPList);
   if (fWriteAOD) {
-    AliAODTagCreator *aodtagCreator = new AliAODTagCreator();
-    aodtagCreator->CreateAODTags(fFirstEvent,fLastEvent,fGRPList);
+    AliWarning("AOD tag creation not supported anymore during reconstruction.");
   }
 
   //Finish QA and end of cycle for out-of-loop QA
-  if (fRunQA && !fInLoopQA) {
-     qas.Run(fRunLocalReconstruction.Data(), AliQA::kRECPOINTS);
-     //qas.Reset() ;
-     qas.Run(fRunTracking.Data(), AliQA::kESDS);
-
+  if (!fInLoopQA) {
+     if (fRunQA) {
+       AliQADataMakerSteer qas;
+       qas.Run(fRunLocalReconstruction.Data(), AliQA::kRECPOINTS, fSameQACycle);
+       //qas.Reset() ;
+       qas.Run(fRunTracking.Data(), AliQA::kESDS, fSameQACycle);
+     }
      if (fRunGlobalQA) {
-        AliQADataMakerRec *qadm = GetQADataMaker(fgkNDetectors);
+        AliQADataMakerRec *qadm = GetQADataMaker(AliQA::kGLOBAL);
         if (qadm) {
           qadm->EndOfCycle(AliQA::kRECPOINTS);
+          qadm->EndOfCycle(AliQA::kESDS);
           qadm->Finish();
        }
      }
@@ -1083,7 +1346,6 @@ Bool_t AliReconstruction::Run(const char* input, Bool_t IsOnline)
   // Cleanup of CDB manager: cache and active storages!
   AliCDBManager::Instance()->ClearCache();
   
-  
   return kTRUE;
 }
 
@@ -1270,7 +1532,7 @@ Bool_t AliReconstruction::RunVertexFinder(AliESDEvent*& esd)
     AliWarning("no vertex reconstructed");
     vertex = new AliESDVertex(vtxPos, vtxErr);
   }
-  esd->SetVertex(vertex);
+  esd->SetPrimaryVertexSPD(vertex);
   // if SPD multiplicity has been determined, it is stored in the ESD
   AliMultiplicity *mult = fVertexer->GetMultiplicity();
   if(mult)esd->SetMultiplicity(mult);
@@ -1439,8 +1701,6 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
 
   // pass 2: ALL backwards
 
-  if (fRunQA && fRunGlobalQA) AliTracker::SetFillResiduals(kTRUE);     
-
   for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
     if (!fTracker[iDet]) continue;
     AliDebug(1, Form("%s back propagation", fgkDetectorName[iDet]));
@@ -1460,6 +1720,9 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
     }
 
     // run tracking
+    if (iDet>1) // start filling residuals for the "outer" detectors
+    if (fRunGlobalQA) AliTracker::SetFillResiduals(kTRUE);     
+
     if (fTracker[iDet]->PropagateBack(esd) != 0) {
       AliError(Form("%s backward propagation failed", fgkDetectorName[iDet]));
       //      return kFALSE;
@@ -1480,8 +1743,8 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
     }
     AliSysInfo::AddStamp(Form("Tracking1%s_%d",fgkDetectorName[iDet],eventNr), iDet,3, eventNr);
   }
-
-  if (fRunQA && fRunGlobalQA) AliTracker::SetFillResiduals(kFALSE);     
+  //stop filling residuals for the "outer" detectors
+  if (fRunGlobalQA) AliTracker::SetFillResiduals(kFALSE);     
 
   // write space-points to the ESD in case alignment data output
   // is switched on
@@ -1490,12 +1753,14 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
 
   // pass 3: TRD + TPC + ITS refit inwards
 
-
   for (Int_t iDet = 2; iDet >= 0; iDet--) {
     if (!fTracker[iDet]) continue;
     AliDebug(1, Form("%s inward refit", fgkDetectorName[iDet]));
 
     // run tracking
+    if (iDet<2) // start filling residuals for TPC and ITS
+    if (fRunGlobalQA) AliTracker::SetFillResiduals(kTRUE);     
+
     if (fTracker[iDet]->RefitInward(esd) != 0) {
       AliError(Form("%s inward refit failed", fgkDetectorName[iDet]));
       //      return kFALSE;
@@ -1515,22 +1780,9 @@ Bool_t AliReconstruction::RunTracking(AliESDEvent*& esd)
     fLoader[iDet]->UnloadRecPoints();
     AliSysInfo::AddStamp(Form("RUnloadCluster%s_%d",fgkDetectorName[iDet],eventNr), iDet,5, eventNr);
   }
+  // stop filling residuals for TPC and ITS
+  if (fRunGlobalQA) AliTracker::SetFillResiduals(kFALSE);     
 
-  //
-  // Propagate track to the vertex - if not done by ITS
-  //
-  Int_t ntracks = esd->GetNumberOfTracks();
-  for (Int_t itrack=0; itrack<ntracks; itrack++){
-    const Double_t kRadius  = 3;   // beam pipe radius
-    const Double_t kMaxStep = 5;   // max step
-    const Double_t kMaxD    = 123456;  // max distance to prim vertex
-    Double_t       fieldZ   = AliTracker::GetBz();  //
-    AliESDtrack * track = esd->GetTrack(itrack);
-    if (!track) continue;
-    if (track->IsOn(AliESDtrack::kITSrefit)) continue;
-   AliTracker::PropagateTrackTo(track,kRadius,track->GetMass(),kMaxStep,kTRUE);
-    track->RelateToVertex(esd->GetVertex(),fieldZ, kMaxD);
-  }
   eventNr++;
   return kTRUE;
 }
@@ -1627,6 +1879,8 @@ Bool_t AliReconstruction::FillTriggerESD(AliESDEvent*& esd)
   
   AliInfo("Filling trigger information into the ESD");
 
+  AliCentralTrigger *aCTP = NULL;
+
   if (fRawReader) {
     AliCTPRawStream input(fRawReader);
     if (!input.Next()) {
@@ -1635,12 +1889,20 @@ Bool_t AliReconstruction::FillTriggerESD(AliESDEvent*& esd)
     }
     esd->SetTriggerMask(input.GetClassMask());
     esd->SetTriggerCluster(input.GetClusterMask());
+
+    aCTP = new AliCentralTrigger();
+    TString configstr("");
+    if (!aCTP->LoadConfiguration(configstr)) { // Load CTP config from OCDB
+      AliError("No trigger configuration found in OCDB! The trigger classes information will no be stored in ESD!");
+      delete aCTP;
+      return kFALSE;
+    }
   }
   else {
     AliRunLoader *runloader = AliRunLoader::GetRunLoader();
     if (runloader) {
       if (!runloader->LoadTrigger()) {
-       AliCentralTrigger *aCTP = runloader->GetTrigger();
+       aCTP = runloader->GetTrigger();
        esd->SetTriggerMask(aCTP->GetClassMask());
        esd->SetTriggerCluster(aCTP->GetClusterMask());
       }
@@ -1655,6 +1917,23 @@ Bool_t AliReconstruction::FillTriggerESD(AliESDEvent*& esd)
     }
   }
 
+  // Now fill the trigger class names into AliESDRun object
+  AliTriggerConfiguration *config = aCTP->GetConfiguration();
+  if (!config) {
+    AliError("No trigger configuration has been found! The trigger classes information will no be stored in ESD!");
+    if (fRawReader) delete aCTP;
+    return kFALSE;
+  }
+
+  const TObjArray& classesArray = config->GetClasses();
+  Int_t nclasses = classesArray.GetEntriesFast();
+  for( Int_t j=0; j<nclasses; j++ ) {
+    AliTriggerClass* trclass = (AliTriggerClass*)classesArray.At( j );
+    Int_t trindex = (Int_t)TMath::Log2(trclass->GetMask());
+    esd->SetTriggerClass(trclass->GetName(),trindex);
+  }
+
+  if (fRawReader) delete aCTP;
   return kTRUE;
 }
 
@@ -1781,25 +2060,13 @@ Bool_t AliReconstruction::InitRunLoader()
       CleanUp();
       return kFALSE;
     }
+    fIsNewRunLoader = kTRUE;
     fRunLoader->MakeTree("E");
-    Int_t iEvent = 0;
-    while (fRawReader->NextEvent()) {
-      fRunLoader->SetEventNumber(iEvent);
-      fRunLoader->GetHeader()->Reset(fRawReader->GetRunNumber(), 
-                                    iEvent, iEvent);
-      fRunLoader->MakeTree("H");
-      fRunLoader->TreeE()->Fill();
-      iEvent++;
-    }
-    fRawReader->RewindEvents();
+
     if (fNumberOfEventsPerFile > 0)
       fRunLoader->SetNumberOfEventsPerFile(fNumberOfEventsPerFile);
     else
-      fRunLoader->SetNumberOfEventsPerFile(iEvent);
-    fRunLoader->WriteHeader("OVERWRITE");
-    fRunLoader->CdGAFile();
-    fRunLoader->Write(0, TObject::kOverwrite);
-//    AliTracker::SetFieldMap(???);
+      fRunLoader->SetNumberOfEventsPerFile((UInt_t)-1);
   }
 
   return kTRUE;
@@ -1954,19 +2221,26 @@ void AliReconstruction::CleanUp(TFile* file, TFile* fileOld)
   }
   delete fVertexer;
   fVertexer = NULL;
+
+  if (ftVertexer) delete ftVertexer;
+  ftVertexer = NULL;
   
   if(!(AliCDBManager::Instance()->GetCacheFlag())) {
        delete fDiamondProfile;
        fDiamondProfile = NULL;
+       delete fDiamondProfileTPC;
+       fDiamondProfileTPC = NULL;
+       delete fGRPList;
+       fGRPList = NULL;
   }
 
-  delete fGRPList;
-  fGRPList = NULL;
 
   delete fRunLoader;
   fRunLoader = NULL;
   delete fRawReader;
   fRawReader = NULL;
+  if (fParentRawReader) delete fParentRawReader;
+  fParentRawReader=NULL;
 
   if (file) {
     file->Close();
@@ -1978,6 +2252,7 @@ void AliReconstruction::CleanUp(TFile* file, TFile* fileOld)
     delete fileOld;
     gSystem->Unlink("AliESDs.old.root");
   }
+
 }
 
 //_____________________________________________________________________________
@@ -2034,760 +2309,6 @@ void AliReconstruction::WriteESD(AliESDEvent* esd, const char* recStep) const
 }
 
 
-
-
-
-//_____________________________________________________________________________
-void AliReconstruction::ESDFile2AODFile(TFile* esdFile, TFile* aodFile)
-{
-  // write all files from the given esd file to an aod file
-
-  // create an AliAOD object 
-  AliAODEvent *aod = new AliAODEvent();
-  aod->CreateStdContent();
-  
-  // go to the file
-  aodFile->cd();
-  
-  // create the tree
-  TTree *aodTree = new TTree("aodTree", "AliAOD tree");
-  aodTree->Branch(aod->GetList());
-
-  // connect to ESD
-  TTree *t = (TTree*) esdFile->Get("esdTree");
-  AliESDEvent *esd = new AliESDEvent();
-  esd->ReadFromTree(t);
-
-  Int_t nEvents = t->GetEntries();
-
-  // set arrays and pointers
-  Float_t posF[3];
-  Double_t pos[3];
-  Double_t p[3];
-  Double_t p_pos[3];
-  Double_t p_neg[3];
-  Double_t covVtx[6];
-  Double_t covTr[21];
-  Double_t pid[10];
-
-  // loop over events and fill them
-  for (Int_t iEvent = 0; iEvent < nEvents; ++iEvent) {
-    //cout << "event: " << iEvent << endl;
-    t->GetEntry(iEvent);
-
-    // Multiplicity information needed by the header (to be revised!)
-    Int_t nTracks   = esd->GetNumberOfTracks();
-    Int_t nPosTracks = 0;
-    for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) 
-      if (esd->GetTrack(iTrack)->Charge()> 0) nPosTracks++;
-
-    // Access the header
-    AliAODHeader *header = aod->GetHeader();
-
-    // fill the header
-    header->SetRunNumber       (esd->GetRunNumber()       );
-    header->SetBunchCrossNumber(esd->GetBunchCrossNumber());
-    header->SetOrbitNumber     (esd->GetOrbitNumber()     );
-    header->SetPeriodNumber    (esd->GetPeriodNumber()    );
-    header->SetTriggerMask     (esd->GetTriggerMask()     ); 
-    header->SetTriggerCluster  (esd->GetTriggerCluster()  );
-    header->SetEventType       (esd->GetEventType()       );
-    header->SetMagneticField   (esd->GetMagneticField()   );
-    header->SetZDCN1Energy     (esd->GetZDCN1Energy()     );
-    header->SetZDCP1Energy     (esd->GetZDCP1Energy()     );
-    header->SetZDCN2Energy     (esd->GetZDCN2Energy()     );
-    header->SetZDCP2Energy     (esd->GetZDCP2Energy()     );
-    header->SetZDCEMEnergy     (esd->GetZDCEMEnergy(0),esd->GetZDCEMEnergy(1));
-    header->SetRefMultiplicity   (nTracks);
-    header->SetRefMultiplicityPos(nPosTracks);
-    header->SetRefMultiplicityNeg(nTracks - nPosTracks);
-    header->SetMuonMagFieldScale(-999.); // FIXME
-    header->SetCentrality(-999.);        // FIXME
-
-    Int_t nV0s      = esd->GetNumberOfV0s();
-    Int_t nCascades = esd->GetNumberOfCascades();
-    Int_t nKinks    = esd->GetNumberOfKinks();
-       Int_t nVertices = nV0s + 2*nCascades /*could lead to two vertices, one V0 and the Xi */+ nKinks + 1 /* = prim. vtx*/;    
-       Int_t nJets     = 0;
-    Int_t nCaloClus = esd->GetNumberOfCaloClusters();
-    Int_t nFmdClus  = 0;
-    Int_t nPmdClus  = esd->GetNumberOfPmdTracks();
-   
-    aod->ResetStd(nTracks, nVertices, nV0s+nCascades, nJets, nCaloClus, nFmdClus, nPmdClus);
-    
-    // Array to take into account the tracks already added to the AOD
-    Bool_t * usedTrack = NULL;
-    if (nTracks>0) {
-      usedTrack = new Bool_t[nTracks];
-      for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) usedTrack[iTrack]=kFALSE;
-    }
-    // Array to take into account the V0s already added to the AOD
-    Bool_t * usedV0 = NULL;
-    if (nV0s>0) {
-      usedV0 = new Bool_t[nV0s];
-      for (Int_t iV0=0; iV0<nV0s; ++iV0) usedV0[iV0]=kFALSE;
-    }
-    // Array to take into account the kinks already added to the AOD
-    Bool_t * usedKink = NULL;
-    if (nKinks>0) {
-      usedKink = new Bool_t[nKinks];
-      for (Int_t iKink=0; iKink<nKinks; ++iKink) usedKink[iKink]=kFALSE;
-    }
-    
-    // Access to the AOD container of vertices
-    TClonesArray &vertices = *(aod->GetVertices());
-    Int_t jVertices=0;
-
-    // Access to the AOD container of tracks
-    TClonesArray &tracks = *(aod->GetTracks());
-    Int_t jTracks=0; 
-   
-    // Access to the AOD container of V0s
-    TClonesArray &V0s = *(aod->GetV0s());
-    Int_t jV0s=0;
-    
-    // Add primary vertex. The primary tracks will be defined
-    // after the loops on the composite objects (V0, cascades, kinks)
-    const AliESDVertex *vtx = esd->GetPrimaryVertex();
-      
-    vtx->GetXYZ(pos); // position
-    vtx->GetCovMatrix(covVtx); //covariance matrix
-
-    AliAODVertex * primary = new(vertices[jVertices++])
-      AliAODVertex(pos, covVtx, vtx->GetChi2toNDF(), NULL, -1, AliAODVertex::kPrimary);
-         
-
-    AliAODTrack *aodTrack = 0x0;
-    
-    // Create vertices starting from the most complex objects
-
-    // Cascades
-    for (Int_t nCascade = 0; nCascade < nCascades; ++nCascade) {
-      AliESDcascade *cascade = esd->GetCascade(nCascade);
-      
-      cascade->GetXYZ(pos[0], pos[1], pos[2]);
-      cascade->GetPosCovXi(covVtx);
-     
-      // Add the cascade vertex
-      AliAODVertex * vcascade = new(vertices[jVertices++]) AliAODVertex(pos,
-                                                                       covVtx,
-                                                                       cascade->GetChi2Xi(), // = chi2/NDF since NDF = 2*2-3
-                                                                       primary,
-                                                                       nCascade,
-                                                                       AliAODVertex::kCascade);
-
-      primary->AddDaughter(vcascade); // the cascade 'particle' (represented by a vertex) is added as a daughter to the primary vertex
-
-      // Add the V0 from the cascade. The ESD class have to be optimized...
-      // Now we have to search for the corresponding V0 in the list of V0s
-      // using the indeces of the positive and negative tracks
-
-      Int_t posFromV0 = cascade->GetPindex();
-      Int_t negFromV0 = cascade->GetNindex();
-
-
-      AliESDv0 * v0 = 0x0;
-      Int_t indV0 = -1;
-
-      for (Int_t iV0=0; iV0<nV0s; ++iV0) {
-
-       v0 = esd->GetV0(iV0);
-       Int_t posV0 = v0->GetPindex();
-       Int_t negV0 = v0->GetNindex();
-
-       if (posV0==posFromV0 && negV0==negFromV0) {
-         indV0 = iV0;
-         break;
-       }
-      }
-
-      AliAODVertex * vV0FromCascade = 0x0;
-
-      if (indV0>-1 && !usedV0[indV0]) {
-       
-       // the V0 exists in the array of V0s and is not used
-
-       usedV0[indV0] = kTRUE;
-       
-       v0->GetXYZ(pos[0], pos[1], pos[2]);
-       v0->GetPosCov(covVtx);
-       
-       vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
-                                                                covVtx,
-                                                                v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
-                                                                vcascade,
-                                                                indV0,
-                                                                AliAODVertex::kV0);
-      } else {
-
-       // the V0 doesn't exist in the array of V0s or was used
-       cerr << "Error: event " << iEvent << " cascade " << nCascade
-            << " The V0 " << indV0 
-            << " doesn't exist in the array of V0s or was used!" << endl;
-
-       cascade->GetXYZ(pos[0], pos[1], pos[2]);
-       cascade->GetPosCov(covVtx);
-      
-       vV0FromCascade = new(vertices[jVertices++]) AliAODVertex(pos,
-                                                                covVtx,
-                                                                v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
-                                                                vcascade,
-                                                                indV0,
-                                                                AliAODVertex::kV0);
-       vcascade->AddDaughter(vV0FromCascade);
-
-      }
-
-      // Add the positive tracks from the V0
-
-      if (! usedTrack[posFromV0]) {
-
-       usedTrack[posFromV0] = kTRUE;
-
-       AliESDtrack *esdTrack = esd->GetTrack(posFromV0);
-       esdTrack->GetPxPyPz(p_pos);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-       
-       vV0FromCascade->AddDaughter(aodTrack =
-                                   new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(), 
-                                          p_pos, 
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vV0FromCascade,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       cerr << "Error: event " << iEvent << " cascade " << nCascade
-            << " track " << posFromV0 << " has already been used!" << endl;
-      }
-
-      // Add the negative tracks from the V0
-
-      if (!usedTrack[negFromV0]) {
-       
-       usedTrack[negFromV0] = kTRUE;
-       
-       AliESDtrack *esdTrack = esd->GetTrack(negFromV0);
-       esdTrack->GetPxPyPz(p_neg);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-       
-       vV0FromCascade->AddDaughter(aodTrack =
-                new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p_neg,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vV0FromCascade,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       cerr << "Error: event " << iEvent << " cascade " << nCascade
-            << " track " << negFromV0 << " has already been used!" << endl;
-      }
-
-      // add it to the V0 array as well
-      Double_t d0[2] = { -999., -99.};
-      // counting is probably wrong
-      new(V0s[jV0s++]) AliAODv0(vV0FromCascade, -999., -99., p_pos, p_neg, d0); // to be refined
-
-      // Add the bachelor track from the cascade
-
-      Int_t bachelor = cascade->GetBindex();
-      
-      if(!usedTrack[bachelor]) {
-      
-       usedTrack[bachelor] = kTRUE;
-       
-       AliESDtrack *esdTrack = esd->GetTrack(bachelor);
-       esdTrack->GetPxPyPz(p);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-
-       vcascade->AddDaughter(aodTrack =
-               new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vcascade,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-     }
-      else {
-       cerr << "Error: event " << iEvent << " cascade " << nCascade
-            << " track " << bachelor << " has already been used!" << endl;
-      }
-      
-      // Add the primary track of the cascade (if any)
-      
-    } // end of the loop on cascades
-    // V0s
-        
-    for (Int_t nV0 = 0; nV0 < nV0s; ++nV0) {
-
-      if (usedV0[nV0]) continue; // skip if aready added to the AOD
-
-      AliESDv0 *v0 = esd->GetV0(nV0); 
-     
-      v0->GetXYZ(pos[0], pos[1], pos[2]);
-      v0->GetPosCov(covVtx);
-
-      AliAODVertex * vV0 = 
-       new(vertices[jVertices++]) AliAODVertex(pos,
-                                               covVtx,
-                                               v0->GetChi2V0(), // = chi2/NDF since NDF = 2*2-3
-                                               primary,
-                                               nV0,
-                                               AliAODVertex::kV0);
-      primary->AddDaughter(vV0);
-
-      Int_t posFromV0 = v0->GetPindex();
-      Int_t negFromV0 = v0->GetNindex();
-      
-      // Add the positive tracks from the V0
-
-      if (!usedTrack[posFromV0]) {
-       
-       usedTrack[posFromV0] = kTRUE;
-
-       AliESDtrack *esdTrack = esd->GetTrack(posFromV0);
-       esdTrack->GetPxPyPz(p_pos);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-       
-       vV0->AddDaughter(aodTrack =
-               new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(), 
-                                          p_pos, 
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vV0,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       cerr << "Error: event " << iEvent << " V0 " << nV0
-            << " track " << posFromV0 << " has already been used!" << endl;
-      }
-
-      // Add the negative tracks from the V0
-
-      if (!usedTrack[negFromV0]) {
-
-       usedTrack[negFromV0] = kTRUE;
-
-       AliESDtrack *esdTrack = esd->GetTrack(negFromV0);
-       esdTrack->GetPxPyPz(p_neg);
-       esdTrack->GetXYZ(pos);
-       esdTrack->GetCovarianceXYZPxPyPz(covTr);
-       esdTrack->GetESDpid(pid);
-
-       vV0->AddDaughter(aodTrack =
-                new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p_neg,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vV0,
-                                          kTRUE,  // check if this is right
-                                          kFALSE, // check if this is right
-                                          AliAODTrack::kSecondary)
-               );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       cerr << "Error: event " << iEvent << " V0 " << nV0
-            << " track " << negFromV0 << " has already been used!" << endl;
-      }
-
-      // add it to the V0 array as well
-      Double_t d0[2] = { 999., 99.};
-      new(V0s[jV0s++]) AliAODv0(vV0, 999., 99., p_pos, p_neg, d0); // to be refined
-    }
-       V0s.Expand(jV0s);        
-    // end of the loop on V0s
-    
-    // Kinks: it is a big mess the access to the information in the kinks
-    // The loop is on the tracks in order to find the mother and daugther of each kink
-
-
-    for (Int_t iTrack=0; iTrack<nTracks; ++iTrack) {
-
-      AliESDtrack * esdTrack = esd->GetTrack(iTrack);
-
-      Int_t ikink = esdTrack->GetKinkIndex(0);
-
-      if (ikink) {
-       // Negative kink index: mother, positive: daughter
-
-       // Search for the second track of the kink
-
-       for (Int_t jTrack = iTrack+1; jTrack<nTracks; ++jTrack) {
-
-         AliESDtrack * esdTrack1 = esd->GetTrack(jTrack);
-
-         Int_t jkink = esdTrack1->GetKinkIndex(0);
-
-         if ( TMath::Abs(ikink)==TMath::Abs(jkink) ) {
-
-           // The two tracks are from the same kink
-         
-           if (usedKink[TMath::Abs(ikink)-1]) continue; // skip used kinks
-
-           Int_t imother = -1;
-           Int_t idaughter = -1;
-
-           if (ikink<0 && jkink>0) {
-
-             imother = iTrack;
-             idaughter = jTrack;
-           }
-           else if (ikink>0 && jkink<0) {
-
-             imother = jTrack;
-             idaughter = iTrack;
-           }
-           else {
-             cerr << "Error: Wrong combination of kink indexes: "
-             << ikink << " " << jkink << endl;
-             continue;
-           }
-
-           // Add the mother track
-
-           AliAODTrack * mother = NULL;
-
-           if (!usedTrack[imother]) {
-       
-             usedTrack[imother] = kTRUE;
-       
-             AliESDtrack *esdTrack = esd->GetTrack(imother);
-             esdTrack->GetPxPyPz(p);
-             esdTrack->GetXYZ(pos);
-             esdTrack->GetCovarianceXYZPxPyPz(covTr);
-             esdTrack->GetESDpid(pid);
-
-             mother = 
-               new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          primary,
-                                          kTRUE, // check if this is right
-                                          kTRUE, // check if this is right
-                                          AliAODTrack::kPrimary);
-             primary->AddDaughter(mother);
-             mother->ConvertAliPIDtoAODPID();
-           }
-           else {
-             cerr << "Error: event " << iEvent << " kink " << TMath::Abs(ikink)-1
-             << " track " << imother << " has already been used!" << endl;
-           }
-
-           // Add the kink vertex
-           AliESDkink * kink = esd->GetKink(TMath::Abs(ikink)-1);
-
-           AliAODVertex * vkink = 
-           new(vertices[jVertices++]) AliAODVertex(kink->GetPosition(),
-                                                   NULL,
-                                                   0.,
-                                                   mother,
-                                                   esdTrack->GetID(), // This is the track ID of the mother's track!
-                                                   AliAODVertex::kKink);
-           // Add the daughter track
-
-           AliAODTrack * daughter = NULL;
-
-           if (!usedTrack[idaughter]) {
-       
-             usedTrack[idaughter] = kTRUE;
-       
-             AliESDtrack *esdTrack = esd->GetTrack(idaughter);
-             esdTrack->GetPxPyPz(p);
-             esdTrack->GetXYZ(pos);
-             esdTrack->GetCovarianceXYZPxPyPz(covTr);
-             esdTrack->GetESDpid(pid);
-
-             daughter = 
-               new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                          esdTrack->GetLabel(),
-                                          p,
-                                          kTRUE,
-                                          pos,
-                                          kFALSE,
-                                          covTr, 
-                                          (Short_t)esdTrack->Charge(),
-                                          esdTrack->GetITSClusterMap(), 
-                                          pid,
-                                          vkink,
-                                          kTRUE, // check if this is right
-                                          kTRUE, // check if this is right
-                                          AliAODTrack::kPrimary);
-             vkink->AddDaughter(daughter);
-             daughter->ConvertAliPIDtoAODPID();
-           }
-           else {
-             cerr << "Error: event " << iEvent << " kink " << TMath::Abs(ikink)-1
-             << " track " << idaughter << " has already been used!" << endl;
-           }
-         }
-       }
-      }
-    }
-    vertices.Expand(jVertices);
-
-    // Tracks (primary and orphan)
-    for (Int_t nTrack = 0; nTrack < nTracks; ++nTrack) {
-
-      if (usedTrack[nTrack]) continue;
-
-      AliESDtrack *esdTrack = esd->GetTrack(nTrack);
-      esdTrack->GetPxPyPz(p);
-      esdTrack->GetXYZ(pos);
-      esdTrack->GetCovarianceXYZPxPyPz(covTr);
-      esdTrack->GetESDpid(pid);
-
-      Float_t impactXY, impactZ;
-
-      esdTrack->GetImpactParameters(impactXY,impactZ);
-
-      if (impactXY<3.) {
-       // track inside the beam pipe
-      
-       primary->AddDaughter(aodTrack =
-           new(tracks[jTracks++]) AliAODTrack(esdTrack->GetID(),
-                                        esdTrack->GetLabel(),
-                                        p,
-                                        kTRUE,
-                                        pos,
-                                        kFALSE,
-                                        covTr, 
-                                        (Short_t)esdTrack->Charge(),
-                                        esdTrack->GetITSClusterMap(), 
-                                        pid,
-                                        primary,
-                                        kTRUE, // check if this is right
-                                        kTRUE, // check if this is right
-                                        AliAODTrack::kPrimary)
-           );
-       aodTrack->ConvertAliPIDtoAODPID();
-      }
-      else {
-       // outside the beam pipe: orphan track
-       // Don't write them anymore!
-       continue;
-      }        
-    } // end of loop on tracks
-    
-    // muon tracks
-    Int_t nMuTracks = esd->GetNumberOfMuonTracks();
-    for (Int_t nMuTrack = 0; nMuTrack < nMuTracks; ++nMuTrack) {
-      
-      AliESDMuonTrack *esdMuTrack = esd->GetMuonTrack(nMuTrack);     
-      p[0] = esdMuTrack->Px(); 
-      p[1] = esdMuTrack->Py(); 
-      p[2] = esdMuTrack->Pz();
-      pos[0] = primary->GetX(); 
-      pos[1] = primary->GetY(); 
-      pos[2] = primary->GetZ();
-      
-      // has to be changed once the muon pid is provided by the ESD
-      for (Int_t i = 0; i < 10; pid[i++] = 0.); pid[AliAODTrack::kMuon]=1.;
-      
-      primary->AddDaughter(aodTrack =
-         new(tracks[jTracks++]) AliAODTrack(0, // no ID provided
-                                            0, // no label provided
-                                            p,
-                                            kTRUE,
-                                            pos,
-                                            kFALSE,
-                                            NULL, // no covariance matrix provided
-                                            esdMuTrack->Charge(),
-                                            0, // ITSClusterMap is set below
-                                            pid,
-                                            primary,
-                                            kFALSE,  // muon tracks are not used to fit the primary vtx
-                                            kFALSE,  // not used for vertex fit
-                                            AliAODTrack::kPrimary)
-         );
-
-      aodTrack->SetHitsPatternInTrigCh(esdMuTrack->GetHitsPatternInTrigCh());
-      Int_t track2Trigger = esdMuTrack->GetMatchTrigger();
-      aodTrack->SetMatchTrigger(track2Trigger);
-      if (track2Trigger) 
-       aodTrack->SetChi2MatchTrigger(esdMuTrack->GetChi2MatchTrigger());
-      else 
-       aodTrack->SetChi2MatchTrigger(0.);
-    }
-    tracks.Expand(jTracks); // remove 'empty slots' due to unwritten tracks
-       
-    // Access to the AOD container of PMD clusters
-    TClonesArray &pmdClusters = *(aod->GetPmdClusters());
-    Int_t jPmdClusters=0;
-  
-    for (Int_t iPmd = 0; iPmd < nPmdClus; ++iPmd) {
-      // file pmd clusters, to be revised!
-      AliESDPmdTrack *pmdTrack = esd->GetPmdTrack(iPmd);
-      Int_t nLabel = 0;
-      Int_t *label = 0x0;
-      Double_t pos[3] = { pmdTrack->GetClusterX(), pmdTrack->GetClusterY(), pmdTrack->GetClusterZ() };
-      Double_t pid[9] = { 0., 0., 0., 0., 0., 0., 0., 0., 0. }; // to be revised!
-      // type not set!
-      // assoc cluster not set
-      new(pmdClusters[jPmdClusters++]) AliAODPmdCluster(iPmd, nLabel, label, pmdTrack->GetClusterADC(), pos, pid);
-    }
-
-    // Access to the AOD container of clusters
-    TClonesArray &caloClusters = *(aod->GetCaloClusters());
-    Int_t jClusters=0;
-    for (Int_t iClust=0; iClust<nCaloClus; ++iClust) {
-
-      AliESDCaloCluster * cluster = esd->GetCaloCluster(iClust);
-
-      Int_t id = cluster->GetID();
-      Int_t nLabel = 0;
-      Int_t *label = 0x0;
-      Float_t energy = cluster->E();
-      cluster->GetPosition(posF);
-      Char_t ttype=AliAODCluster::kUndef;
-
-      if (cluster->GetClusterType() == AliESDCaloCluster::kPHOSCluster) {
-       ttype=AliAODCluster::kPHOSNeutral;
-      } 
-      else if (cluster->GetClusterType() == AliESDCaloCluster::kEMCALClusterv1) {
-       ttype = AliAODCluster::kEMCALClusterv1;
-      }
-
-      
-      AliAODCaloCluster *caloCluster = new(caloClusters[jClusters++]) AliAODCaloCluster(id,
-                                                                                       nLabel,
-                                                                                       label,
-                                                                                       energy,
-                                                                                       pos,
-                                                                                       NULL,
-                                                                                       ttype);
-      
-      caloCluster->SetCaloCluster(); // to be refined!
-
-    } 
-    caloClusters.Expand(jClusters); // resize TObjArray to 'remove' slots for pseudo clusters   
-    // end of loop on calo clusters
-
-    // fill EMCAL cell info
-    if (esd->GetEMCALCells()) { // protection against missing ESD information
-      AliESDCaloCells &esdEMcells = *(esd->GetEMCALCells());
-      Int_t nEMcell = esdEMcells.GetNumberOfCells() ;
-      
-      AliAODCaloCells &aodEMcells = *(aod->GetEMCALCells());
-      aodEMcells.CreateContainer(nEMcell);
-      aodEMcells.SetType(AliAODCaloCells::kEMCAL);
-      for (Int_t iCell = 0; iCell < nEMcell; iCell++) {      
-       aodEMcells.SetCell(iCell,esdEMcells.GetCellNumber(iCell),esdEMcells.GetAmplitude(iCell));
-      }
-      aodEMcells.Sort();
-    }
-
-    // fill PHOS cell info
-    if (esd->GetPHOSCells()) { // protection against missing ESD information
-      AliESDCaloCells &esdPHcells = *(esd->GetPHOSCells());
-      Int_t nPHcell = esdPHcells.GetNumberOfCells() ;
-      
-      AliAODCaloCells &aodPHcells = *(aod->GetPHOSCells());
-      aodPHcells.CreateContainer(nPHcell);
-      aodPHcells.SetType(AliAODCaloCells::kPHOS);
-      for (Int_t iCell = 0; iCell < nPHcell; iCell++) {      
-       aodPHcells.SetCell(iCell,esdPHcells.GetCellNumber(iCell),esdPHcells.GetAmplitude(iCell));
-      }
-      aodPHcells.Sort();
-    }
-
-    // tracklets    
-    AliAODTracklets &SPDTracklets = *(aod->GetTracklets());
-    const AliMultiplicity *mult = esd->GetMultiplicity();
-    if (mult) {
-      if (mult->GetNumberOfTracklets()>0) {
-       SPDTracklets.CreateContainer(mult->GetNumberOfTracklets());
-
-       for (Int_t n=0; n<mult->GetNumberOfTracklets(); n++) {
-         SPDTracklets.SetTracklet(n, mult->GetTheta(n), mult->GetPhi(n), mult->GetDeltaPhi(n), mult->GetLabel(n));
-       }
-      }
-    } else {
-      Printf("ERROR: AliMultiplicity could not be retrieved from ESD");
-    }
-
-    delete [] usedTrack;
-    delete [] usedV0;
-    delete [] usedKink;
-
-    // fill the tree for this event
-    aodTree->Fill();
-  } // end of event loop
-
-  aodTree->GetUserInfo()->Add(aod);
-
-  // write the tree to the specified file
-  aodFile = aodTree->GetCurrentFile();
-  aodFile->cd();
-  aodTree->Write();
-
-  return;
-}
-
 void AliReconstruction::WriteAlignmentData(AliESDEvent* esd)
 {
   // Write space-points which are then used in the alignment procedures
@@ -3009,8 +2530,8 @@ void AliReconstruction::CheckQA()
         
        for (Int_t iDet = 0; iDet < AliQA::kNDET; iDet++) {
                TString detName(AliQA::GetDetName(iDet)) ;
-               AliQA * qa = AliQA::Instance(AliQA::DETECTORINDEX(iDet)) ; 
-               if ( qa->IsSet(AliQA::DETECTORINDEX(iDet), AliQA::kSIM, AliQA::kFATAL)) {
+               AliQA * qa = AliQA::Instance(AliQA::DETECTORINDEX_t(iDet)) ; 
+               if ( qa->IsSet(AliQA::DETECTORINDEX_t(iDet), AliQA::kSIM, AliQA::kFATAL)) {
                                AliInfo(Form("QA status for %s in Hits and/or SDIGITS  and/or Digits was Fatal; No reconstruction performed", detName.Data())) ;
                } else {
                        if ( fRunLocalReconstruction.Contains(AliQA::GetDetName(iDet)) || 
@@ -3046,3 +2567,50 @@ Int_t AliReconstruction::GetDetIndex(const char* detector)
   }    
   return index ; 
 }
+//_____________________________________________________________________________
+Bool_t AliReconstruction::FinishPlaneEff() {
+ //
+ // Here execute all the necessary operationis, at the end of the tracking phase,
+ // in case that evaluation of PlaneEfficiencies was required for some detector. 
+ // E.g., write into a DataBase file the PlaneEfficiency which have been evaluated. 
+ //
+ // This Preliminary version works only FOR ITS !!!!!
+ // other detectors (TOF,TRD, etc. have to develop their specific codes)
+ //
+ //  Input: none
+ //  Return: kTRUE if all operations have been done properly, kFALSE otherwise 
+ //
+ Bool_t ret=kFALSE;
+ //for (Int_t iDet = 0; iDet < fgkNDetectors; iDet++) {
+ for (Int_t iDet = 0; iDet < 1; iDet++) { // for the time being only ITS  
+   //if (!IsSelected(fgkDetectorName[iDet], detStr)) continue;
+   if(fTracker[iDet]) {
+      AliPlaneEff *planeeff=fTracker[iDet]->GetPlaneEff(); 
+      ret=planeeff->WriteIntoCDB();
+      if(planeeff->GetCreateHistos()) {
+        TString name="PlaneEffHisto";
+        name+=fgkDetectorName[iDet];
+        name+=".root";
+        ret*=planeeff->WriteHistosToFile(name,"RECREATE");
+      }
+   }
+ }
+ return ret;
+}
+//_____________________________________________________________________________
+Bool_t AliReconstruction::InitPlaneEff() {
+//
+ // Here execute all the necessary operations, before of the tracking phase,
+ // for the evaluation of PlaneEfficiencies, in case required for some detectors.
+ // E.g., read from a DataBase file a first evaluation of the PlaneEfficiency 
+ // which should be updated/recalculated.
+ //
+ // This Preliminary version will work only FOR ITS !!!!!
+ // other detectors (TOF,TRD, etc. have to develop their specific codes)
+ //
+ //  Input: none
+ //  Return: kTRUE if all operations have been done properly, kFALSE otherwise
+ //
+ AliWarning(Form("Implementation of this method not yet done !! Method return kTRUE"));
+ return kTRUE;
+}