]> git.uio.no Git - u/mrichter/AliRoot.git/blobdiff - TRD/AliTRDtracker.cxx
running local for SP and LYZEP and new histograms for QC
[u/mrichter/AliRoot.git] / TRD / AliTRDtracker.cxx
index 636ec2513906acc6564b3b13cfe17aeea4d92ddb..eb00d3241d02511285a3ca9baea7859be75bf1b8 100644 (file)
 //                                                                           //
 //  Authors:                                                                 //
 //     M. Ivanov  (Marian.Ivanov@cern.ch)                                    //
-//     Y. Belikov (Jouri.Belikov@cern.ch)                                    //
 //                                                                           //
 ///////////////////////////////////////////////////////////////////////////////
 
-
-#include <Riostream.h>
 #include <TBranch.h>
 #include <TFile.h>
 #include <TGraph.h>
-#include <TH1D.h>
-#include <TH2D.h>
 #include <TLinearFitter.h>
 #include <TObjArray.h> 
 #include <TROOT.h>
@@ -55,6 +50,7 @@
 #include "AliTRDCommonParam.h"
 #include "AliTRDtracker.h"
 #include "AliTRDReconstructor.h"
+#include "AliTRDrecoParam.h"
 #include "AliTRDCalibraFillHisto.h"
 
 ClassImp(AliTRDtracker)
@@ -62,12 +58,23 @@ ClassImp(AliTRDtracker)
 const  Float_t  AliTRDtracker::fgkMinClustersInTrack =  0.5;  //
 const  Float_t  AliTRDtracker::fgkLabelFraction      =  0.8;  //
 const  Double_t AliTRDtracker::fgkMaxChi2            = 12.0;  //
-const  Double_t AliTRDtracker::fgkMaxSnp             =  0.95; // Corresponds to tan = 3
+const  Double_t AliTRDtracker::fgkMaxSnp             =  0.95; // Maximum local sine of the azimuthal angle
 const  Double_t AliTRDtracker::fgkMaxStep            =  2.0;  // Maximal step size in propagation 
 
 //_____________________________________________________________________________
-AliTRDtracker::AliTRDtracker()
+AliTRDtracker::AliTRDtracker(AliTRDReconstructor *rec)
   :AliTracker()
+  ,fReconstructor(rec)
+  ,fGeom(0)
+  ,fNclusters(0)
+  ,fClusters(0)
+  ,fNseeds(0)
+  ,fSeeds(0)
+  ,fNtracks(0)
+  ,fTracks(0)
+  ,fTimeBinsPerPlane(0)
+  ,fAddTRDseeds(kFALSE)
+  ,fNoTilt(kFALSE)
   ,fHBackfit(0x0)
   ,fHClSearch(0x0)
   ,fHRefit(0x0)
@@ -80,16 +87,6 @@ AliTRDtracker::AliTRDtracker()
   ,fHMinD(0x0)
   ,fHDeltaX(0x0)
   ,fHXCl(0x0)
-  ,fGeom(0)
-  ,fNclusters(0)
-  ,fClusters(0)
-  ,fNseeds(0)
-  ,fSeeds(0)
-  ,fNtracks(0)
-  ,fTracks(0)
-  ,fTimeBinsPerPlane(0)
-  ,fAddTRDseeds(kFALSE)
-  ,fNoTilt(kFALSE)
   ,fDebugStreamer(0)
 {
   //
@@ -99,11 +96,6 @@ AliTRDtracker::AliTRDtracker()
   for (Int_t i = 0; i < kTrackingSectors; i++) {
     fTrSec[i] = 0;
   }
-  for (Int_t j = 0; j <  5; j++) {
-    for (Int_t k = 0; k < 18; k++) {
-      fHoles[j][k] = kFALSE;
-    }
-  }
 
   InitLogHists();
 
@@ -112,6 +104,17 @@ AliTRDtracker::AliTRDtracker()
 //_____________________________________________________________________________
 AliTRDtracker::AliTRDtracker(const AliTRDtracker &t)
   :AliTracker(t)
+  ,fReconstructor(t.fReconstructor)
+  ,fGeom(0)
+  ,fNclusters(0)
+  ,fClusters(0)
+  ,fNseeds(0)
+  ,fSeeds(0)
+  ,fNtracks(0)
+  ,fTracks(0)
+  ,fTimeBinsPerPlane(0)
+  ,fAddTRDseeds(kFALSE)
+  ,fNoTilt(kFALSE)
   ,fHBackfit(0x0)
   ,fHClSearch(0x0)
   ,fHRefit(0x0)
@@ -124,16 +127,6 @@ AliTRDtracker::AliTRDtracker(const AliTRDtracker &t)
   ,fHMinD(0x0)
   ,fHDeltaX(0x0)
   ,fHXCl(0x0)
-  ,fGeom(0)
-  ,fNclusters(0)
-  ,fClusters(0)
-  ,fNseeds(0)
-  ,fSeeds(0)
-  ,fNtracks(0)
-  ,fTracks(0)
-  ,fTimeBinsPerPlane(0)
-  ,fAddTRDseeds(kFALSE)
-  ,fNoTilt(kFALSE)
   ,fDebugStreamer(0)
 {
   //
@@ -143,8 +136,19 @@ AliTRDtracker::AliTRDtracker(const AliTRDtracker &t)
 }
 
 //_____________________________________________________________________________
-AliTRDtracker::AliTRDtracker(const TFile */*geomfile*/)
+AliTRDtracker::AliTRDtracker(const TFile */*geomfile*/, AliTRDReconstructor *rec)
   :AliTracker()
+  ,fReconstructor(rec)
+  ,fGeom(0)
+  ,fNclusters(0)
+  ,fClusters(new TObjArray(2000))
+  ,fNseeds(0)
+  ,fSeeds(new TObjArray(2000))
+  ,fNtracks(0)
+  ,fTracks(new TObjArray(1000))
+  ,fTimeBinsPerPlane(0)
+  ,fAddTRDseeds(kFALSE)
+  ,fNoTilt(kFALSE)
   ,fHBackfit(0x0)
   ,fHClSearch(0x0)
   ,fHRefit(0x0)
@@ -157,16 +161,6 @@ AliTRDtracker::AliTRDtracker(const TFile */*geomfile*/)
   ,fHMinD(0x0)
   ,fHDeltaX(0x0)
   ,fHXCl(0x0)
-  ,fGeom(0)
-  ,fNclusters(0)
-  ,fClusters(new TObjArray(2000))
-  ,fNseeds(0)
-  ,fSeeds(new TObjArray(2000))
-  ,fNtracks(0)
-  ,fTracks(new TObjArray(1000))
-  ,fTimeBinsPerPlane(0)
-  ,fAddTRDseeds(kFALSE)
-  ,fNoTilt(kFALSE)
   ,fDebugStreamer(0)
 {
   // 
@@ -176,15 +170,10 @@ AliTRDtracker::AliTRDtracker(const TFile */*geomfile*/)
   TDirectory *savedir = gDirectory; 
 
   fGeom = new AliTRDgeometry();
-  fGeom->ReadGeoMatrices();
 
   for (Int_t geomS = 0; geomS < kTrackingSectors; geomS++) {
     Int_t trS   = geomS;
     fTrSec[trS] = new AliTRDtrackingSector(fGeom,geomS);
-    for (Int_t icham = 0; icham < AliTRDgeometry::kNcham; icham++) {
-      // Could also go ...
-      fHoles[icham][trS] = fGeom->IsHole(0,icham,geomS);
-    }
   }
 
   AliTRDpadPlane *padPlane = fGeom->GetPadPlane(0,0);
@@ -249,12 +238,12 @@ Int_t  AliTRDtracker::LocalToGlobalID(Int_t lid)
   // Transform internal TRD ID to global detector ID
   //
 
-  Int_t  isector  = fGeom->GetSector(lid);
-  Int_t  ichamber = fGeom->GetChamber(lid);
-  Int_t  iplan    = fGeom->GetPlane(lid);
+  Int_t  isector = fGeom->GetSector(lid);
+  Int_t  istack  = fGeom->GetStack(lid);
+  Int_t  ilayer  = fGeom->GetLayer(lid);
 
   AliGeomManager::ELayerID iLayer = AliGeomManager::kTRD1;
-  switch (iplan) {
+  switch (ilayer) {
   case 0:
     iLayer = AliGeomManager::kTRD1;
     break;
@@ -275,7 +264,7 @@ Int_t  AliTRDtracker::LocalToGlobalID(Int_t lid)
     break;
   };
 
-  Int_t    modId = isector * fGeom->Ncham() + ichamber;
+  Int_t    modId = isector * fGeom->Nstack() + istack;
   UShort_t volid = AliGeomManager::LayerToVolUID(iLayer,modId);
 
   return volid;
@@ -292,9 +281,9 @@ Int_t  AliTRDtracker::GlobalToLocalID(Int_t gid)
   Int_t modId    = 0;
   AliGeomManager::ELayerID layerId = AliGeomManager::VolUIDToLayer(gid,modId);
 
-  Int_t isector  = modId / fGeom->Ncham();
-  Int_t ichamber = modId % fGeom->Ncham();
-  Int_t iLayer   = -1;
+  Int_t isector = modId / fGeom->Nstack();
+  Int_t istack  = modId % fGeom->Nstack();
+  Int_t iLayer  = -1;
 
   switch (layerId) {
   case AliGeomManager::kTRD1:
@@ -323,7 +312,7 @@ Int_t  AliTRDtracker::GlobalToLocalID(Int_t gid)
     return -1;
   }
 
-  Int_t lid = fGeom->GetDetector(iLayer,ichamber,isector);
+  Int_t lid = fGeom->GetDetector(iLayer,istack,isector);
 
   return lid;
 
@@ -340,18 +329,12 @@ Bool_t AliTRDtracker::AdjustSector(AliTRDtrack *track)
   Double_t y     = track->GetY();
   Double_t ymax  = track->GetX()*TMath::Tan(0.5*alpha);
 
-  // Is this still needed ????
-  //Int_t ns = AliTRDgeometry::kNsect;
-  //Int_t s=Int_t(track->GetAlpha()/alpha)%ns; 
-
   if      (y >  ymax) {
-    //s = (s+1) % ns;
     if (!track->Rotate( alpha)) {
       return kFALSE;
     }
   } 
   else if (y < -ymax) {
-    //s = (s-1+ns) % ns;                           
     if (!track->Rotate(-alpha)) {
       return kFALSE;   
     }
@@ -383,8 +366,8 @@ AliTRDcluster *AliTRDtracker::GetCluster(AliTRDtrack *track, Int_t plane
     if (cli->GetLocalTimeBin() != timebin) {
       continue;
     }
-    Int_t iplane = fGeom->GetPlane(cli->GetDetector());
-    if (iplane == plane) {
+    Int_t ilayer = fGeom->GetLayer(cli->GetDetector());
+    if (ilayer == plane) {
       cl    = cli;
       index = indexes[i];
       break;
@@ -410,74 +393,15 @@ Int_t  AliTRDtracker::GetLastPlane(AliTRDtrack *track)
     if (!cli) {
       break;
     }
-    Int_t iplane = fGeom->GetPlane(cli->GetDetector());
-    if (iplane > lastplane) {
-      lastplane = iplane;
+    Int_t ilayer = fGeom->GetLayer(cli->GetDetector());
+    if (ilayer > lastplane) {
+      lastplane = ilayer;
     }
   }
 
   return lastplane;
 
 }
-
-//_____________________________________________________________________________
-Int_t AliTRDtracker::Clusters2Tracks(AliESDEvent *event)
-{
-  //
-  // Finds tracks within the TRD. The ESD event is expected to contain seeds 
-  // at the outer part of the TRD. The seeds
-  // are found within the TRD if fAddTRDseeds is TRUE. 
-  // The tracks are propagated to the innermost time bin 
-  // of the TRD and the ESD event is updated
-  //
-
-  Int_t   timeBins = fTrSec[0]->GetNumberOfTimeBins();
-  Float_t foundMin = fgkMinClustersInTrack * timeBins; 
-  Int_t   nseed    = 0;
-  Int_t   found    = 0;
-  //Int_t innerTB = fTrSec[0]->GetInnerTimeBin();
-
-  Int_t n = event->GetNumberOfTracks();
-  for (Int_t i = 0; i < n; i++) {
-
-    AliESDtrack *seed = event->GetTrack(i);
-    ULong_t status = seed->GetStatus();
-    if ((status & AliESDtrack::kTRDout) == 0) {
-      continue;
-    }
-    if ((status & AliESDtrack::kTRDin)  != 0) {
-      continue;
-    }
-    nseed++;
-    
-    AliTRDtrack *seed2 = new AliTRDtrack(*seed);
-    //seed2->ResetCovariance(); 
-    AliTRDtrack *pt    = new AliTRDtrack(*seed2,seed2->GetAlpha());
-    AliTRDtrack &t     = *pt; 
-    FollowProlongation(t); 
-    if (t.GetNumberOfClusters() >= foundMin) {
-      UseClusters(&t);
-      CookLabel(pt,1 - fgkLabelFraction);
-      //t.CookdEdx();
-    }
-    found++;
-
-    Double_t xTPC = 250.0;
-    if (PropagateToX(t,xTPC,fgkMaxStep)) {
-      seed->UpdateTrackParams(pt, AliESDtrack::kTRDin);
-    }  
-    delete seed2;
-    delete pt;
-
-  }
-
-  AliInfo(Form("Number of loaded seeds: %d",nseed));
-  AliInfo(Form("Number of found tracks from loaded seeds: %d",found));
-  AliInfo(Form("Total number of found tracks: %d",found));
-    
-  return 0;    
-
-}     
      
 //_____________________________________________________________________________
 Int_t AliTRDtracker::PropagateBack(AliESDEvent *event) 
@@ -491,275 +415,245 @@ Int_t AliTRDtracker::PropagateBack(AliESDEvent *event)
   // by the TPC tracker.   
   //  
 
-  Int_t   found    = 0;     // number of tracks found
-  Float_t foundMin = 20.0;
-  Int_t   n        = event->GetNumberOfTracks();
-
-  // Sort tracks
-  Float_t *quality = new Float_t[n];
-  Int_t   *index   = new Int_t[n];
-  for (Int_t i = 0; i < n; i++) {
-    AliESDtrack *seed = event->GetTrack(i);
-    Double_t covariance[15];
-    seed->GetExternalCovariance(covariance);
-    quality[i] = covariance[0]+covariance[2];      
-    //quality[i] = covariance[0];
-  }
-  TMath::Sort(n,quality,index,kFALSE);
-
-  for (Int_t i = 0; i < n; i++) {
-
-    //AliESDtrack *seed = event->GetTrack(i);
-    AliESDtrack *seed = event->GetTrack(index[i]);
-    fHBackfit->Fill(0);
-
-    ULong_t status = seed->GetStatus();
-    if ((status & AliESDtrack::kTPCout) == 0) {
-      fHBackfit->Fill(1);
-      continue;
-    }
-
-    if ((status & AliESDtrack::kTRDout) != 0) {
-      fHBackfit->Fill(2);
-      continue;
-    }
-
-    Int_t   lbl = seed->GetLabel();
-    AliTRDtrack *track = new AliTRDtrack(*seed);
-    track->SetSeedLabel(lbl);
-    seed->UpdateTrackParams(track,AliESDtrack::kTRDbackup); // Make backup
-    fNseeds++;
-    Float_t p4  = track->GetC();
-    Int_t expectedClr = FollowBackProlongation(*track);
-    
-    fHBackfit->Fill(3);
-    fHX->Fill(track->GetX());
-
-
-    // store the last measurement
-    /*
-    fHNClTrack->Fill(track->GetNumberOfClusters());
-    if (track->GetNumberOfClusters() >= foundMin) {
-
-      fHBackfit->Fill(4);
-      track->CookdEdx(); 
-      CookdEdxTimBin(*track);
-      CookLabel(track,1 - fgkLabelFraction);
-      if (track->GetBackupTrack()) {
-       //fHBackfit->Fill(5);
-       UseClusters(track->GetBackupTrack());
-       seed->UpdateTrackParams(track->GetBackupTrack(),AliESDtrack::kTRDbackup);
-      }
-    }
-    */
-
-    /**/
-    // inter-tracks competition ???
-    if ((TMath::Abs(track->GetC() - p4) / TMath::Abs(p4) < 0.2) || 
-        (track->Pt()                                     > 0.8)) {
-      
-      fHBackfit->Fill(4);
-      
-      // 
-      // Make backup for back propagation 
-      //
-      
-      Int_t foundClr = track->GetNumberOfClusters();
-      if (foundClr >= foundMin) {
-       track->CookdEdx(); 
-       track->CookdEdxTimBin(seed->GetID()); // A.Bercuci 25.07.07
-       CookLabel(track,1 - fgkLabelFraction);
-       if (track->GetBackupTrack()) {
-          UseClusters(track->GetBackupTrack());
-       }
-
-        // Sign only gold tracks
-       if (track->GetChi2() / track->GetNumberOfClusters() < 4) {   
-         if ((seed->GetKinkIndex(0)      ==   0) &&
-              (track->Pt()                <  1.5)) {
-            UseClusters(track);
-         }
-       }
-       Bool_t isGold = kFALSE;
+       Int_t   found    = 0;     // number of tracks found
+       Float_t foundMin = 20.0;
        
-        // Full gold track
-       if (track->GetChi2() / track->GetNumberOfClusters() < 5) {  
-         //seed->UpdateTrackParams(track, AliESDtrack::kTRDbackup);
-         if (track->GetBackupTrack()) {
-            seed->UpdateTrackParams(track->GetBackupTrack(),AliESDtrack::kTRDbackup);
-           
-         }
-         isGold = kTRUE;
-         //fHBackfit->Fill()
-       }
-
-        // Almost gold track
-       if ((!isGold)                                              && 
-            (track->GetNCross()                              == 0) && 
-            (track->GetChi2() / track->GetNumberOfClusters()  < 7)) { 
-         //seed->UpdateTrackParams(track, AliESDtrack::kTRDbackup);
-         if (track->GetBackupTrack()) {
-            seed->UpdateTrackParams(track->GetBackupTrack(),AliESDtrack::kTRDbackup);
-         }
-         isGold = kTRUE;
-       }
-
-       if ((!isGold) && 
-            (track->GetBackupTrack())) {
-         if ((track->GetBackupTrack()->GetNumberOfClusters() > foundMin) &&
-             ((track->GetBackupTrack()->GetChi2()/(track->GetBackupTrack()->GetNumberOfClusters()+1)) < 7)) {    
-           seed->UpdateTrackParams(track->GetBackupTrack(),AliESDtrack::kTRDbackup);
-           isGold = kTRUE;
-         }
+       Int_t    nSeed   = event->GetNumberOfTracks();
+       if(!nSeed){
+               // run stand alone tracking
+               if (fReconstructor->IsSeeding()) Clusters2Tracks(event);
+               return 0;
        }
-
-       if ((track->StatusForTOF() > 0) &&
-            (track->GetNCross() == 0) && 
-            (Float_t(track->GetNumberOfClusters()) / Float_t(track->GetNExpected())  > 0.4)) {
-         //seed->UpdateTrackParams(track->GetBackupTrack(), AliESDtrack::kTRDbackup);
+       
+       Float_t *quality = new Float_t[nSeed];
+       Int_t   *index   = new Int_t[nSeed];
+       for (Int_t iSeed = 0; iSeed < nSeed; iSeed++) {
+               AliESDtrack *seed = event->GetTrack(iSeed);
+               Double_t covariance[15];
+               seed->GetExternalCovariance(covariance);
+               quality[iSeed] = covariance[0] + covariance[2];
        }
-
-      }
-    }
-    /**/
-
-    /**/
-    // Debug part of tracking
-    TTreeSRedirector &cstream = *fDebugStreamer;
-    Int_t eventNrInFile = event->GetEventNumberInFile(); // This is most likely NOT the event number you'd like to use. It has nothing to do with the 'real' event number.
-    if (AliTRDReconstructor::StreamLevel() > 0) {
-      if (track->GetBackupTrack()) {
-       cstream << "Tracks"
-               << "EventNrInFile="  << eventNrInFile
-               << "ESD.="     << seed
-               << "trd.="     << track
-               << "trdback.=" << track->GetBackupTrack()
-               << "\n";
-      }
-      else {
-       cstream << "Tracks"
-               << "EventNrInFile="  << eventNrInFile
-               << "ESD.="     << seed
-               << "trd.="     << track
-               << "trdback.=" << track
-               << "\n";
-      }
-    }
-    /**/
-
-    // Propagation to the TOF (I.Belikov)    
-    if (track->GetStop() == kFALSE) {
-      fHBackfit->Fill(5);
-
-      Double_t xtof  = 371.0;
-      Double_t xTOF0 = 370.0;
-    
-      Double_t c2    = track->GetSnp() + track->GetC() * (xtof - track->GetX());
-      if (TMath::Abs(c2) >= 0.99) {
+       // Sort tracks according to covariance of local Y and Z
+       TMath::Sort(nSeed,quality,index,kFALSE);
        
-       fHBackfit->Fill(6);
-       delete track;
-       continue;
-      }
-      
-      PropagateToX(*track,xTOF0,fgkMaxStep);
+       // Backpropagate all seeds
+       for (Int_t iSeed = 0; iSeed < nSeed; iSeed++) {
+       
+               // Get the seeds in sorted sequence
+               AliESDtrack *seed = event->GetTrack(index[iSeed]);
+               fHBackfit->Fill(0);   // All seeds
+       
+               // Check the seed status
+               ULong_t status = seed->GetStatus();
+               if ((status & AliESDtrack::kTPCout) == 0) {
+                       fHBackfit->Fill(1); // TPC outer edge reached
+                       continue;
+               }
+               if ((status & AliESDtrack::kTRDout) != 0) {
+                       fHBackfit->Fill(2); // TRD outer edge reached (does this happen ?)
+                       continue;
+               }
+       
+               // Do the back prolongation
+               Int_t   lbl         = seed->GetLabel();
+               AliTRDtrack *track  = new AliTRDtrack(*seed);
+               track->SetSeedLabel(lbl);
+               seed->UpdateTrackParams(track,AliESDtrack::kTRDbackup); // Make backup
+               fNseeds++;
+               Float_t p4          = track->GetC();
+               Int_t   expectedClr = FollowBackProlongation(*track);
+               fHBackfit->Fill(3);   // Back prolongation done
+               fHX->Fill(track->GetX());
+       
+               if ((TMath::Abs(track->GetC() - p4) / TMath::Abs(p4) < 0.2) ||
+                               (track->Pt()                                     > 0.8)) {
+                       
+                       fHBackfit->Fill(4);
+                       
+                       //
+                       // Make backup for back propagation
+                       //
+                       
+                       Int_t foundClr = track->GetNumberOfClusters();
+                       if (foundClr >= foundMin) {
+                               track->CookdEdx();
+                               track->CookdEdxTimBin(seed->GetID()); // A.Bercuci 25.07.07
+                               CookLabel(track,1 - fgkLabelFraction);
+                               if (track->GetBackupTrack()) UseClusters(track->GetBackupTrack());
+                               
+                               
+                               // Sign only gold tracks
+                               if (track->GetChi2() / track->GetNumberOfClusters() < 4) {
+                                       if ((seed->GetKinkIndex(0)      ==   0) &&
+                                                       (track->Pt()                <  1.5)) {
+                                                                       UseClusters(track);
+                                       }
+                               }
+                               Bool_t isGold = kFALSE;
+       
+                               // Full gold track
+                               if (track->GetChi2() / track->GetNumberOfClusters() < 5) {
+                                       //seed->UpdateTrackParams(track, AliESDtrack::kTRDbackup);
+                                       if (track->GetBackupTrack()) {
+                                               seed->UpdateTrackParams(track->GetBackupTrack(),AliESDtrack::kTRDbackup);
+                                       }
+                                       isGold = kTRUE;
+                                       //fHBackfit->Fill()
+                               }
+       
+                               // Almost gold track
+                               if ((!isGold)  && (track->GetNCross() == 0) &&
+                                               (track->GetChi2() / track->GetNumberOfClusters()  < 7)) {
+                                       //seed->UpdateTrackParams(track, AliESDtrack::kTRDbackup);
+                                       if (track->GetBackupTrack()) {
+                                               seed->UpdateTrackParams(track->GetBackupTrack(),AliESDtrack::kTRDbackup);
+                                       }
+                                       isGold = kTRUE;
+                               }
+                               
+                               if ((!isGold) && (track->GetBackupTrack())) {
+                                       if ((track->GetBackupTrack()->GetNumberOfClusters() > foundMin) && ((track->GetBackupTrack()->GetChi2()/(track->GetBackupTrack()->GetNumberOfClusters()+1)) < 7)) {
+                                               seed->UpdateTrackParams(track->GetBackupTrack(),AliESDtrack::kTRDbackup);
+                                               isGold = kTRUE;
+                                       }
+                               }
+       
+                               if ((track->StatusForTOF() > 0) && (track->GetNCross() == 0) && (Float_t(track->GetNumberOfClusters()) / Float_t(track->GetNExpected())  > 0.4)) {
+                                       //seed->UpdateTrackParams(track->GetBackupTrack(), AliESDtrack::kTRDbackup);
+                               }
+                       }
+               }
+               /**/
+       
+               /**/
+               // Debug part of tracking
+               TTreeSRedirector &cstream = *fDebugStreamer;
+               Int_t eventNrInFile = event->GetEventNumberInFile(); // This is most likely NOT the event number you'd like to use. It has nothing to do with the 'real' event number.
+               if (fReconstructor->GetStreamLevel(AliTRDReconstructor::kTracker) > 0) {
+                       if (track->GetBackupTrack()) {
+                               cstream << "Tracks"
+                               << "EventNrInFile="  << eventNrInFile
+                               << "ESD.="     << seed
+                               << "trd.="     << track
+                               << "trdback.=" << track->GetBackupTrack()
+                               << "\n";
+                       }
+                       else {
+                               cstream << "Tracks"
+                               << "EventNrInFile="  << eventNrInFile
+                               << "ESD.="     << seed
+                               << "trd.="     << track
+                               << "trdback.=" << track
+                               << "\n";
+                       }
+               }
+               /**/
+       
+               // Propagation to the TOF (I.Belikov)
+               if (track->GetStop() == kFALSE) {
+                       fHBackfit->Fill(5);
+       
+                       Double_t xtof  = 371.0;
+                       Double_t xTOF0 = 370.0;
+               
+                       Double_t c2    = track->GetSnp() + track->GetC() * (xtof - track->GetX());
+                       if (TMath::Abs(c2) >= 0.99) {
+                               fHBackfit->Fill(6);
+                               delete track;
+                               continue;
+                       }
+                       
+                       PropagateToX(*track,xTOF0,fgkMaxStep);
+       
+                       // Energy losses taken to the account - check one more time
+                       c2 = track->GetSnp() + track->GetC() * (xtof - track->GetX());
+                       if (TMath::Abs(c2) >= 0.99) {
+                               fHBackfit->Fill(7);
+                               delete track;
+                               continue;
+                       }
+                       
+                       //if (!PropagateToX(*track,xTOF0,fgkMaxStep)) {
+                       //      fHBackfit->Fill(7);
+                       //delete track;
+                       //      continue;
+                       //}
+       
+                       Double_t ymax = xtof * TMath::Tan(0.5 * AliTRDgeometry::GetAlpha());
+                       Double_t y;
+                       track->GetYAt(xtof,GetBz(),y);
+                       if (y >  ymax) {
+                               if (!track->Rotate( AliTRDgeometry::GetAlpha())) {
+                                       fHBackfit->Fill(8);
+                                       delete track;
+                                       continue;
+                               }
+                       }
+                       else if (y < -ymax) {
+                               if (!track->Rotate(-AliTRDgeometry::GetAlpha())) {
+                                       fHBackfit->Fill(9);
+                                       delete track;
+                                       continue;
+                               }
+                       }
+                                       
+                       if (track->PropagateTo(xtof)) {
+                               seed->UpdateTrackParams(track,AliESDtrack::kTRDout);
+                               fHBackfit->Fill(10);
+       
+        seed->SetNumberOfTRDslices(AliTRDtrack::kNslice);
+                               for (Int_t i = 0; i < AliTRDtrack::kNplane; i++) {
+                                       for (Int_t j = 0; j < AliTRDtrack::kNslice; j++) {
+                                               seed->SetTRDslice(track->GetPIDsignals(i,j),i,j);
+                                       }
+                                       seed->SetTRDTimBin(track->GetPIDTimBin(i),i);
+                               }
+                               //seed->SetTRDtrack(new AliTRDtrack(*track));
+                               if (track->GetNumberOfClusters() > foundMin) {
+                                       fHBackfit->Fill(11);
+                                                               found++;
+                               }
+                       }
+               }
+               else {                  
+                       fHBackfit->Fill(12);
+                       
+                       if ((track->GetNumberOfClusters() >              15) &&
+                                       (track->GetNumberOfClusters() > 0.5*expectedClr)) {
+                               seed->UpdateTrackParams(track,AliESDtrack::kTRDout);
+                               fHBackfit->Fill(13);
+       
+                               //seed->SetStatus(AliESDtrack::kTRDStop);
 
-      // Energy losses taken to the account - check one more time
-      c2 = track->GetSnp() + track->GetC() * (xtof - track->GetX());
-      if (TMath::Abs(c2) >= 0.99) {
+        seed->SetNumberOfTRDslices(AliTRDtrack::kNslice);
+                               for (Int_t i = 0; i < AliTRDtrack::kNplane; i++) {
+                                       for (Int_t j = 0; j <AliTRDtrack::kNslice; j++) {
+                                               seed->SetTRDslice(track->GetPIDsignals(i,j),i,j);
+                                       }
+                                       seed->SetTRDTimBin(track->GetPIDTimBin(i),i);
+                               }
+                               //seed->SetTRDtrack(new AliTRDtrack(*track));
+                               found++;
+                       }
+               }
        
-       fHBackfit->Fill(7);
-       delete track;
-       continue;
-      }
-      
-      //if (!PropagateToX(*track,xTOF0,fgkMaxStep)) {
-      //       fHBackfit->Fill(7);
-      //delete track;
-      //       continue;
-      //} 
-
-      Double_t ymax = xtof * TMath::Tan(0.5 * AliTRDgeometry::GetAlpha());
-      Double_t y; 
-      track->GetYAt(xtof,GetBz(),y);
-      if (y >  ymax) {
-       if (!track->Rotate( AliTRDgeometry::GetAlpha())) {
-         fHBackfit->Fill(8);
-         delete track;
-         continue;
-       }
-      } 
-      else if (y < -ymax) {
-       if (!track->Rotate(-AliTRDgeometry::GetAlpha())) {
-         fHBackfit->Fill(9);
-         delete track;
-         continue;
-       }
-      }
-         
-      if (track->PropagateTo(xtof)) {
-       seed->UpdateTrackParams(track,AliESDtrack::kTRDout);
-       fHBackfit->Fill(10);
-
-        for (Int_t i = 0; i < AliESDtrack::kNPlane; i++) {
-          for (Int_t j = 0; j < AliESDtrack::kNSlice; j++) {
-            seed->SetTRDsignals(track->GetPIDsignals(i,j),i,j);
-         }
-          seed->SetTRDTimBin(track->GetPIDTimBin(i),i);
-        }
-       //seed->SetTRDtrack(new AliTRDtrack(*track));
-       if (track->GetNumberOfClusters() > foundMin) {
-         fHBackfit->Fill(11);
-          found++;
+               seed->SetTRDQuality(track->StatusForTOF());
+               seed->SetTRDBudget(track->GetBudget(0));
+       
+               fHBackfit->Fill(14);
+               delete track;
        }
-      }
-
-    }
-    else {
-      
-      fHBackfit->Fill(12);
-      
-      if ((track->GetNumberOfClusters() >              15) &&
-          (track->GetNumberOfClusters() > 0.5*expectedClr)) {
        
-       seed->UpdateTrackParams(track,AliESDtrack::kTRDout);
-       fHBackfit->Fill(13);
-
-       //seed->SetStatus(AliESDtrack::kTRDStop);    
-        for (Int_t i = 0; i < AliESDtrack::kNPlane; i++) {
-          for (Int_t j = 0; j <AliESDtrack::kNSlice; j++) {
-            seed->SetTRDsignals(track->GetPIDsignals(i,j),i,j);
-         }
-          seed->SetTRDTimBin(track->GetPIDTimBin(i),i);
-        }
-       //seed->SetTRDtrack(new AliTRDtrack(*track));
-       found++;
-      }
-
-    }
-
-    seed->SetTRDQuality(track->StatusForTOF());    
-    seed->SetTRDBudget(track->GetBudget(0));    
-  
-    fHBackfit->Fill(14);
-    delete track;
-  }
-
-  AliInfo(Form("Number of seeds: %d",fNseeds));
-  AliInfo(Form("Number of back propagated TRD tracks: %d",found));
-  
-  // New seeding
-  if (AliTRDReconstructor::SeedingOn()) {
-    MakeSeedsMI(3,5,event);
-  }
-
-  fSeeds->Clear(); 
-  fNseeds = 0;
-
-  delete [] index;
-  delete [] quality;
-  
-  SaveLogHists();
+       AliInfo(Form("Number of seeds: %d",fNseeds));
+       AliInfo(Form("Number of back propagated TRD tracks: %d",found));
+               
+       fSeeds->Clear();
+       fNseeds = 0;
+       
+       delete [] index;
+       delete [] quality;
+       
+       SaveLogHists();
   
   return 0;
 }
@@ -775,14 +669,20 @@ Int_t AliTRDtracker::RefitInward(AliESDEvent *event)
   // Origin: Thomas KUHR (Thomas.Kuhr@cern.ch)
   //
 
-  Int_t   timeBins = fTrSec[0]->GetNumberOfTimeBins();
-  Float_t foundMin = fgkMinClustersInTrack * timeBins; 
+  //Int_t   timeBins = fTrSec[0]->GetNumberOfTimeBins();
+  //Float_t foundMin = fgkMinClustersInTrack * timeBins; 
   Int_t   nseed    = 0;
   Int_t   found    = 0;
   Int_t   pidQ     = 0;
   //Int_t innerTB    = fTrSec[0]->GetInnerTimeBin();
   AliTRDtrack seed2;
   
+  // Calibration fill 2D
+  AliTRDCalibraFillHisto *calibra = AliTRDCalibraFillHisto::Instance();
+  if (!calibra) {
+    AliInfo("Could not get Calibra instance\n");
+  }
+  
   Int_t n = event->GetNumberOfTracks();
   for (Int_t i = 0; i < n; i++) {
 
@@ -813,78 +713,79 @@ Int_t AliTRDtracker::RefitInward(AliESDEvent *event)
 
     AliTRDtrack *pt = new AliTRDtrack(seed2,seed2.GetAlpha());
     Int_t *indexes2 = seed2.GetIndexes();
-    for (Int_t i = 0; i < AliESDtrack::kNPlane;i++) {
-      for (Int_t j = 0; j < AliESDtrack::kNSlice;j++) {
-        pt->SetPIDsignals(seed2.GetPIDsignals(i,j),i,j);
+    for (Int_t l = 0; l < AliTRDtrack::kNplane;++l) {
+      for (Int_t j = 0; j < AliTRDtrack::kNslice;j++) {
+        pt->SetPIDsignals(seed2.GetPIDsignals(l,j),l,j);
       }
-      pt->SetPIDTimBin(seed2.GetPIDTimBin(i),i);
+      pt->SetPIDTimBin(seed2.GetPIDTimBin(l),l);
     }
 
     Int_t *indexes3 = pt->GetBackupIndexes();
-    for (Int_t i = 0; i < 200;i++) {
-      if (indexes2[i] == 0) {
+    for (Int_t l = 0; l < 200;++l) {
+      if (indexes2[l] == 0) {
         break;
       }
-      indexes3[i] = indexes2[i];
+      indexes3[l] = indexes2[l];
     }  
         
-    //AliTRDtrack *pt = seed2;
-    //AliTRDtrack &t = *pt; 
     FollowProlongation(*pt); 
-    //if (pt->GetNumberOfClusters() >= foundMin) {
-      //UseClusters(&t);
-      //CookLabel(pt, 1-fgkLabelFraction);
-      pt->CookdEdx();
-      pt->CookdEdxTimBin(seed->GetID());
-      pt->SetPIDMethod(AliTRDtrack::kLQ);  //switch between TRD PID methods
-      pt->CookPID(pidQ);
-      //pt->Calibrate(); // slot for calibration
-      //}
+    pt->CookdEdx();
+    pt->CookdEdxTimBin(seed->GetID());
+
+    //calculate PID methods    
+    pt->SetPIDMethod(AliTRDtrack::kLQ);
+    pt->CookPID(pidQ);
+    seed->SetTRDpid(pt->GetPID());
+    seed->SetTRDpidQuality(pidQ);
+
+    // update calibration
+    if(calibra->GetHisto2d()) calibra->UpdateHistograms(pt);
     found++;
 
     Double_t xTPC = 250.0;
     if (PropagateToX(*pt,xTPC,fgkMaxStep)) {
-
       seed->UpdateTrackParams(pt,AliESDtrack::kTRDrefit);
       fHRefit->Fill(5);
 
-      for (Int_t i = 0; i < AliESDtrack::kNPlane; i++) {
-        for (Int_t j = 0; j < AliESDtrack::kNSlice; j++) {
-          seed->SetTRDsignals(pt->GetPIDsignals(i,j),i,j);
-       }
-        seed->SetTRDTimBin(pt->GetPIDTimBin(i),i);
+      for (Int_t l = 0; l < AliTRDtrack::kNplane; ++l) {
+        for (Int_t j = 0; j < AliTRDtrack::kNslice; j++) {
+          seed->SetTRDslice(pt->GetPIDsignals(l,j),l,j);
+        }
+        seed->SetTRDTimBin(pt->GetPIDTimBin(l),l);
       }
-    }
-    else {
+    } else {
       // If not prolongation to TPC - propagate without update
       fHRefit->Fill(5);
-      AliTRDtrack *seed2 = new AliTRDtrack(*seed);
-      seed2->ResetCovariance(5.0); 
-      AliTRDtrack *pt2   = new AliTRDtrack(*seed2,seed2->GetAlpha());
-      delete seed2;
+      AliTRDtrack *seed2t = new AliTRDtrack(*seed);
+      seed2t->ResetCovariance(5.0); 
+      AliTRDtrack *pt2   = new AliTRDtrack(*seed2t,seed2t->GetAlpha());
+      delete seed2t;
+
       if (PropagateToX(*pt2,xTPC,fgkMaxStep)) { 
-        pt2->CookdEdx( ); 
+        pt2->CookdEdx(); 
         pt2->CookdEdxTimBin(seed->GetID()); 
-       seed->UpdateTrackParams(pt2,AliESDtrack::kTRDrefit);
-       fHRefit->Fill(6);
-
-        for (Int_t i = 0; i < AliESDtrack::kNPlane; i++) {
-          for (Int_t j = 0; j < AliESDtrack::kNSlice; j++) {
-            seed->SetTRDsignals(pt2->GetPIDsignals(i,j),i,j);
-                               }
-          seed->SetTRDTimBin(pt2->GetPIDTimBin(i),i);
+        seed->UpdateTrackParams(pt2,AliESDtrack::kTRDrefit);
+        fHRefit->Fill(6);
+
+        for (Int_t l = 0; l < AliTRDtrack::kNplane; ++l) {
+          for (Int_t j = 0; j < AliTRDtrack::kNslice; j++) {
+            seed->SetTRDslice(pt2->GetPIDsignals(l,j),l,j);
+          }
+          seed->SetTRDTimBin(pt2->GetPIDTimBin(l),l);
         }
       }
 
-      // Add TRD track to ESDfriendTrack - maybe this tracks are not useful for post-processing - TODO make decission
-      if (AliTRDReconstructor::StreamLevel() > 0)  {
+      // Add TRD track to ESDfriendTrack - maybe this tracks are
+      // not useful for post-processing - TODO make decision
+      if (fReconstructor->GetStreamLevel(AliTRDReconstructor::kTracker) > 0)  {
         seed->AddCalibObject(new AliTRDtrack(*pt2/*, kTRUE*/));
       }
       delete pt2;
+
     }
 
     // Add TRD track to ESDfriendTrack
-    if (AliTRDReconstructor::StreamLevel() > 0)  {
+    if (fReconstructor->GetStreamLevel(AliTRDReconstructor::kTracker) > 0)  {
       seed->AddCalibObject(new AliTRDtrack(*pt/*, kTRUE*/));
     }
     delete pt;
@@ -895,155 +796,160 @@ Int_t AliTRDtracker::RefitInward(AliESDEvent *event)
   AliInfo(Form("Number of found tracks from loaded seeds: %d",found));
 
   SaveLogHists();
+
   return 0;
+
 }
 
 //_____________________________________________________________________________
 Int_t AliTRDtracker::FollowProlongation(AliTRDtrack &t)
 {
-       //
-       // Starting from current position on track=t this function tries
-       // to extrapolate the track up to timeBin=0 and to confirm prolongation
-       // if a close cluster is found. Returns the number of clusters
-       // expected to be found in sensitive layers
-       // GeoManager used to estimate mean density
-       //
+  //
+  // Starting from current position on track=t this function tries
+  // to extrapolate the track up to timeBin=0 and to confirm prolongation
+  // if a close cluster is found. Returns the number of clusters
+  // expected to be found in sensitive layers
+  // GeoManager used to estimate mean density
+  //
 
-       Int_t    sector;
-       Int_t    lastplane = GetLastPlane(&t);
-       Double_t xx0 = 0.0;
-       Double_t xrho= 0.0;
-       Int_t    expectedNumberOfClusters = 0;
+  Int_t    sector;
+  Int_t    lastplane = GetLastPlane(&t);
+  Double_t xx0 = 0.0;
+  Double_t xrho= 0.0;
+  Int_t    expectedNumberOfClusters = 0;
 
-       for (Int_t iplane = lastplane; iplane >= 0; iplane--) {
+  for (Int_t iplane = lastplane; iplane >= 0; iplane--) {
 
-               Int_t row0    = GetGlobalTimeBin(0,iplane,GetTimeBinsPerPlane()-1);
-               Int_t rowlast = GetGlobalTimeBin(0,iplane,0);
+    Int_t row0    = GetGlobalTimeBin(0,iplane,GetTimeBinsPerPlane()-1);
+    Int_t rowlast = GetGlobalTimeBin(0,iplane,0);
 
-               //
-               // Propagate track close to the plane if neccessary
-               //
-               Double_t currentx  = fTrSec[0]->GetLayer(rowlast)->GetX();
-               if (currentx < (-fgkMaxStep + t.GetX())) {
-                       // Propagate closer to chamber - safety space fgkMaxStep
-                       if (!PropagateToX(t,currentx+fgkMaxStep,fgkMaxStep)) {
-                               break;
-                       }
-               }
+    // Propagate track close to the plane if neccessary
+    Double_t currentx  = fTrSec[0]->GetLayer(rowlast)->GetX();
+    if (currentx < (-fgkMaxStep + t.GetX())) {
+      // Propagate closer to chamber - safety space fgkMaxStep
+      if (!PropagateToX(t,currentx+fgkMaxStep,fgkMaxStep)) {
+       break;
+      }
+    }
 
-               if (!AdjustSector(&t)) {
-                       break;
-               }
+    if (!AdjustSector(&t)) {
+      break;
+    }
 
-               //
-               // Get material budget
-               //
-               Double_t xyz0[3];
-               Double_t xyz1[3];
-               Double_t param[7];
-               Double_t x;
-               Double_t y;
-               Double_t z;
-
-               // Starting global position
-               t.GetXYZ(xyz0);
-               // End global position
-               x = fTrSec[0]->GetLayer(row0)->GetX();
-               if (!t.GetProlongation(x,y,z)) {
-                       break;
-               }
-               xyz1[0] =  x * TMath::Cos(t.GetAlpha()) - y * TMath::Sin(t.GetAlpha());
-               xyz1[1] = +x * TMath::Sin(t.GetAlpha()) + y * TMath::Cos(t.GetAlpha());
-               xyz1[2] =  z;
-               AliTracker::MeanMaterialBudget(xyz0,xyz1,param);
-               xrho= param[0]*param[4];
-               xx0 = param[1]; // Get mean propagation parameters
-               // A.Bercuci 25.07.07
-               // Flags for marking the track momentum and direction. The track is
-               // marked only if it has at least 1 cluster picked up in the current
-               // chamber.
-               Bool_t kUPDATED = kFALSE, kMARKED = kFALSE;
+    // Get material budget
+    Double_t xyz0[3];
+    Double_t xyz1[3];
+    Double_t param[7]; 
+    Double_t x;
+    Double_t y;
+    Double_t z;
 
-               //
-               // Propagate and update
-               //
-               sector = t.GetSector();
-               //for (Int_t itime=GetTimeBinsPerPlane()-1;itime>=0;itime--) {
-               for (Int_t itime = 0 ; itime < GetTimeBinsPerPlane(); itime++) {
-                       // A.Bercuci 25.07.07
-                       // Mark track kinematics
-                       if(itime > 10 && kUPDATED && !kMARKED){
-                               t.SetTrackSegmentDirMom(iplane);
-                               kMARKED = kTRUE;
-                       }
+    // Starting global position
+    t.GetXYZ(xyz0);
+    // End global position
+    x = fTrSec[0]->GetLayer(row0)->GetX();
+    if (!t.GetProlongation(x,y,z)) {
+      break;
+    }
+    xyz1[0] =  x * TMath::Cos(t.GetAlpha()) - y * TMath::Sin(t.GetAlpha());
+    xyz1[1] = +x * TMath::Sin(t.GetAlpha()) + y * TMath::Cos(t.GetAlpha());
+    xyz1[2] =  z;
+    AliTracker::MeanMaterialBudget(xyz0,xyz1,param);
+    xrho= param[0]*param[4];
+    xx0 = param[1]; // Get mean propagation parameters
 
-                       Int_t ilayer = GetGlobalTimeBin(0,iplane,itime);
-                       expectedNumberOfClusters++;
-                       t.SetNExpected(t.GetNExpected() + 1);
-                       if (t.GetX() > 345.0) {
-                               t.SetNExpectedLast(t.GetNExpectedLast() + 1);
-                       }
-                       AliTRDpropagationLayer &timeBin = *(fTrSec[sector]->GetLayer(ilayer));
-                       AliTRDcluster *cl = 0;
-                       UInt_t   index   = 0;
-                       Double_t maxChi2 = fgkMaxChi2;
-                       x = timeBin.GetX();
+    // Flags for marking the track momentum and direction. The track is
+    // marked only if it has at least 1 cluster picked up in the current
+    // chamber.
+    Bool_t kUPDATED = kFALSE;
+    Bool_t kMARKED  = kFALSE;
 
-                       if (timeBin) {
+    // Propagate and update
+    sector = t.GetSector();
+    //for (Int_t itime=GetTimeBinsPerPlane()-1;itime>=0;itime--) {
+    for (Int_t itime = 0 ; itime < GetTimeBinsPerPlane(); itime++) {
 
-                               AliTRDcluster *cl0 = timeBin[0];
-                               if (!cl0) {
-                                       // No clusters in given time bin
-                                       continue;
-                               }
+      // Mark track kinematics
+      if (itime > 10 && kUPDATED && !kMARKED) {
+       t.SetTrackSegmentDirMom(iplane);
+       kMARKED = kTRUE;
+      }
 
-                               Int_t plane   = fGeom->GetPlane(cl0->GetDetector());
-                               if (plane > lastplane) {
-                                                               continue;
-                               }
+      Int_t ilayer = GetGlobalTimeBin(0,iplane,itime);
+      expectedNumberOfClusters++;
+      t.SetNExpected(t.GetNExpected() + 1);
+      if (t.GetX() > 345.0) {
+       t.SetNExpectedLast(t.GetNExpectedLast() + 1);
+      }
+      AliTRDpropagationLayer &timeBin = *(fTrSec[sector]->GetLayer(ilayer));
+      AliTRDcluster *cl = 0;
+      UInt_t   index   = 0;
+      Double_t maxChi2 = fgkMaxChi2;
+      x = timeBin.GetX();
 
-                               Int_t timebin = cl0->GetLocalTimeBin();
-                               AliTRDcluster *cl2 = GetCluster(&t,plane,timebin,index);
+      if (timeBin) {
 
-                               if (cl2) {
-                                       cl = cl2;
-                                       //Double_t h01 = GetTiltFactor(cl);    //I.B's fix
-                                       //maxChi2=t.GetPredictedChi2(cl,h01);
-                               }
-                               if (cl) {
-                                       //if (cl->GetNPads()<5)
-                                       Double_t dxsample = timeBin.GetdX();
-                                       t.SetSampledEdx(TMath::Abs(cl->GetQ()/dxsample));
-                                                               Double_t h01      = GetTiltFactor(cl);
-                                       Int_t    det      = cl->GetDetector();
-                                       Int_t    plane    = fGeom->GetPlane(det);
-                                       if (t.GetX() > 345.0) {
-                                               t.SetNLast(t.GetNLast() + 1);
-                                               t.SetChi2Last(t.GetChi2Last() + maxChi2);
-                                       }
+       AliTRDcluster *cl0 = timeBin[0];
+       if (!cl0) {
+         // No clusters in given time bin
+         continue;
+       }
+
+        Int_t layer = fGeom->GetLayer(cl0->GetDetector());
+       if (layer > lastplane) {
+         continue;
+       }
+
+       Int_t timebin = cl0->GetLocalTimeBin();
+       AliTRDcluster *cl2 = GetCluster(&t,layer,timebin,index);
+
+       if (cl2) {
+         cl = cl2;
+         //Double_t h01 = GetTiltFactor(cl);    //I.B's fix
+         //maxChi2=t.GetPredictedChi2(cl,h01);
+       }
+
+       if (cl) {
+
+         //if (cl->GetNPads()<5)
+         Double_t dxsample = timeBin.GetdX();
+         t.SetSampledEdx(TMath::Abs(cl->GetQ()/dxsample));
+         Double_t h01      = GetTiltFactor(cl);
+         Int_t    det      = cl->GetDetector();
+         Int_t    llayer   = fGeom->GetLayer(det);
+
+         if (t.GetX() > 345.0) {
+           t.SetNLast(t.GetNLast() + 1);
+           t.SetChi2Last(t.GetChi2Last() + maxChi2);
+         }
+
+         Double_t xcluster = cl->GetX();
+         t.PropagateTo(xcluster,xx0,xrho);                     
+         if (!AdjustSector(&t)) {
+           break;           //I.B's fix
+         }
+
+         maxChi2 = t.GetPredictedChi2(cl,h01);                                 
+         if (maxChi2 < 1e+10) {
+           if (!t.UpdateMI(cl,maxChi2,index,h01,llayer)) {
+             // ????
+           } 
+            else {
+             //SetCluster(cl, GetNumberOfClusters()-1);
+             kUPDATED = kTRUE;
+           }
+         }
 
-                                       Double_t xcluster = cl->GetX();
-                                       t.PropagateTo(xcluster,xx0,xrho);
-                                       
-                                       if (!AdjustSector(&t)) {
-                                               break;           //I.B's fix
-                                       }
-                                       maxChi2 = t.GetPredictedChi2(cl,h01);
-                                       
-                                       if (maxChi2<1e+10)
-                                               if (!t.UpdateMI(cl,maxChi2,index,h01,plane)) {
-                                                       // ????
-                                               } else {
-                                                       // A.Bercuci 25.07.07
-                                                       //SetCluster(cl, GetNumberOfClusters()-1);
-                                                       kUPDATED = kTRUE;
-                                               }
-                               }
-                       }
-               }
        }
 
-       return expectedNumberOfClusters;
+      }
+
+    }
+
+  }
+
+  return expectedNumberOfClusters;
+
 }                
 
 //_____________________________________________________________________________
@@ -1051,98 +957,111 @@ Int_t AliTRDtracker::FollowBackProlongation(AliTRDtrack &t)
 {
   //  
   // Starting from current radial position of track <t> this function
-  // extrapolates the track up to outer timebin and in the sensitive
+  // extrapolates the track up to the outer timebin and in the sensitive
   // layers confirms prolongation if a close cluster is found. 
   // Returns the number of clusters expected to be found in sensitive layers
-  // Use GEO manager for material Description
+  // Uses the geomanager for material description
   //
   // return number of assigned clusters ? 
   //
 
+  Int_t    sector;
+
+  Double_t xx0    = 0.0;
+  Double_t xrho   = 0.0;
+
+  Float_t  ratio0 = 0.0;
 
-  Int_t    sector;
-  Int_t    clusters[1000];
-  Double_t xx0  = 0.0;
-  Double_t xrho = 0.0;
   Int_t    expectedNumberOfClusters = 0;
-  Float_t  ratio0    = 0.0;
-  AliTRDtracklet tracklet;
 
-  // Calibration fill 2D
-  AliTRDCalibraFillHisto *calibra = AliTRDCalibraFillHisto::Instance();
-  if (!calibra) {
-    AliInfo("Could not get Calibra instance\n");
-  }
-  if (calibra->GetMITracking()) {
-    calibra->ResetTrack();
-  }
+  AliTRDtracklet tracklet;
 
-  for (Int_t i = 0; i < 1000; i++) {
+  const Int_t kNclusters = 1000;
+  Int_t       clusters[kNclusters];
+  for (Int_t i = 0; i < kNclusters; i++) {
     clusters[i] = -1;
   }
 
-  for (Int_t iplane = 0; iplane < AliESDtrack::kNPlane; iplane++) {
+//   // Calibration fill 2D
+//   AliTRDCalibraFillHisto *calibra = AliTRDCalibraFillHisto::Instance();
+//   if (!calibra) {
+//     AliInfo("Could not get Calibra instance\n");
+//   }
+//   if (calibra->GetMITracking()) {
+//     calibra->ResetTrack();
+//   }
+
+  // Loop through the TRD planes
+  for (Int_t iplane = 0; iplane < AliTRDtrack::kNplane; iplane++) {
 
-    int hb = iplane * 10;
+    Int_t hb = iplane * 10;
     fHClSearch->Fill(hb);
 
+    // Get the global time bin numbers for the first an last 
+    // local time bin of the given plane
     Int_t    row0     = GetGlobalTimeBin(0,iplane,GetTimeBinsPerPlane()-1);
     Int_t    rowlast  = GetGlobalTimeBin(0,iplane,0);
+
+    // Get the X coordinates of the propagation layer for the first time bin
     Double_t currentx = fTrSec[0]->GetLayer(row0)->GetX();
     if (currentx < t.GetX()) {
       fHClSearch->Fill(hb+1);
       continue;
     }
 
-    //
-    // Propagate closer to chamber if neccessary 
-    //
+    // Propagate closer to the current chamber if neccessary 
     if (currentx > (fgkMaxStep + t.GetX())) {
       if (!PropagateToX(t,currentx-fgkMaxStep,fgkMaxStep)) {
        fHClSearch->Fill(hb+2);
         break;
       }
     }
+
+    // Rotate track to adjacent sector if neccessary
     if (!AdjustSector(&t)) {
       fHClSearch->Fill(hb+3);
       break;
     }
+
+    // Check whether azimuthal angle is getting too large
     if (TMath::Abs(t.GetSnp()) > fgkMaxSnp) {
       fHClSearch->Fill(hb+4);
       break;
     }
 
-    //
-    // Get material budget inside of chamber
-    //
     Double_t xyz0[3];
     Double_t xyz1[3];
     Double_t param[7];
     Double_t x;
     Double_t y;
     Double_t z;
-    // Starting global position
+    // Global start position (beginning of chamber)
     t.GetXYZ(xyz0);   
-    // End global position
+    // X-position of the end of the chamber
     x = fTrSec[0]->GetLayer(rowlast)->GetX();
+    // Get local Y and Z at the X-position of the end of the chamber
     if (!t.GetProlongation(x,y,z)) {
       fHClSearch->Fill(hb+5);
       break;
     }
+    // Global end position (end of chamber)
     xyz1[0] =  x * TMath::Cos(t.GetAlpha()) - y * TMath::Sin(t.GetAlpha()); 
     xyz1[1] = +x * TMath::Sin(t.GetAlpha()) + y * TMath::Cos(t.GetAlpha());
     xyz1[2] =  z;
+
+    // Calculate the mean material budget along the path inside the chamber
     AliTracker::MeanMaterialBudget(xyz0,xyz1,param);   
+    // The mean propagation parameters (density*length and radiation length)
     xrho = param[0]*param[4];
-    xx0  = param[1]; // Get mean propagation parameters
+    xx0  = param[1]; 
 
-    //
-    // Find clusters
-    //
-    sector = t.GetSector();
+    // Find the clusters and tracklet along the path inside the chamber
+    sector      = t.GetSector();
     Float_t ncl = FindClusters(sector,row0,rowlast,&t,clusters,tracklet);
     fHNCl->Fill(tracklet.GetN());
 
+    // Discard if in less than 1/3 of the available timebins 
+    // clusters are found 
     if (tracklet.GetN() < GetTimeBinsPerPlane()/3) {
       fHClSearch->Fill(hb+6);
       continue;
@@ -1152,7 +1071,6 @@ Int_t AliTRDtracker::FollowBackProlongation(AliTRDtrack &t)
     // Propagate and update track
     //
     for (Int_t itime = GetTimeBinsPerPlane()-1; itime >= 0; itime--) {
-
       Int_t ilayer = GetGlobalTimeBin(0, iplane,itime);
       expectedNumberOfClusters++;       
       t.SetNExpected(t.GetNExpected() + 1);
@@ -1166,50 +1084,48 @@ Int_t AliTRDtracker::FollowBackProlongation(AliTRDtrack &t)
       x = timeBin.GetX();
 
       if (timeBin) {   
-
-       if (clusters[ilayer] > 0) {
-         index = clusters[ilayer];
-         cl    = (AliTRDcluster *)GetCluster(index);
-         //Double_t h01 = GetTiltFactor(cl);   // I.B's fix
-          //maxChi2=t.GetPredictedChi2(cl,h01); //
-       }
+                               if (clusters[ilayer] > 0) {
+                                       index = clusters[ilayer];
+                                       cl    = (AliTRDcluster *)GetCluster(index);
+                                       //Double_t h01 = GetTiltFactor(cl);   // I.B's fix
+                                                               //maxChi2=t.GetPredictedChi2(cl,h01); //
+                               }
        
         if (cl) {
+                                       //if (cl->GetNPads() < 5)
+                                       Double_t dxsample = timeBin.GetdX();
+                                       t.SetSampledEdx(TMath::Abs(cl->GetQ()/dxsample));
+                                                               Double_t h01      = GetTiltFactor(cl);
+                                       Int_t    det      = cl->GetDetector();
+                                       Int_t    layer    = fGeom->GetLayer(det);
+                                       if (t.GetX() > 345.0) {
+                                               t.SetNLast(t.GetNLast() + 1);
+                                               t.SetChi2Last(t.GetChi2Last() + maxChi2);
+                                       }
+                                       Double_t xcluster = cl->GetX();
+                                       t.PropagateTo(xcluster,xx0,xrho);
+                                       maxChi2 = t.GetPredictedChi2(cl,h01);
 
-         //if (cl->GetNPads() < 5) 
-         Double_t dxsample = timeBin.GetdX();
-         t.SetSampledEdx(TMath::Abs(cl->GetQ()/dxsample)); 
-          Double_t h01      = GetTiltFactor(cl);
-         Int_t    det      = cl->GetDetector();    
-         Int_t    plane    = fGeom->GetPlane(det);
-         if (t.GetX() > 345.0) {
-           t.SetNLast(t.GetNLast() + 1);
-           t.SetChi2Last(t.GetChi2Last() + maxChi2);
-         }
-         Double_t xcluster = cl->GetX();
-         t.PropagateTo(xcluster,xx0,xrho);
-         maxChi2 = t.GetPredictedChi2(cl,h01);
-
-         if (maxChi2<1e+10)
-           if (!t.UpdateMI(cl,maxChi2,index,h01,plane)) {
-             if (!t.Update(cl,maxChi2,index,h01)) {
-               // ????
-             }
-           } // else SetCluster(cl, GetNumberOfClusters()-1); // A.Bercuci 25.07.07
+                                       if (maxChi2<1e+10)
+                                               if (!t.UpdateMI(cl,maxChi2,index,h01,layer)) {
+                                                       if (!t.Update(cl,maxChi2,index,h01)) {
+                                       // ????
+                                                       }
+                                               } // else SetCluster(cl, GetNumberOfClusters()-1); // A.Bercuci 25.07.07
   
 
-          if (calibra->GetMITracking()) {
-            calibra->UpdateHistograms(cl,&t);
-          }
-
-         // Reset material budget if 2 consecutive gold
-         if (plane > 0) { 
-           if ((t.GetTracklets(plane).GetN() + t.GetTracklets(plane-1).GetN()) > 20) {
-             t.SetBudget(2,0.0);
-           }
-         }
+//           if (calibra->GetMITracking()) {
+//             calibra->UpdateHistograms(cl,&t);
+//           }
 
-       }
+                                       // Reset material budget if 2 consecutive gold
+                                       if (layer > 0) {
+                                               if ((t.GetTracklets(layer).GetN() + t.GetTracklets(layer-1).GetN()) > 20) {
+                                                       t.SetBudget(2,0.0);
+                                               }
+                                       }
+                       
+                               }
 
       }
 
@@ -1231,25 +1147,27 @@ Int_t AliTRDtracker::FollowBackProlongation(AliTRDtrack &t)
   }
 
   return expectedNumberOfClusters;  
+
 }         
 
 //_____________________________________________________________________________
 Int_t AliTRDtracker::PropagateToX(AliTRDtrack &t, Double_t xToGo, Double_t maxStep)
 {
   //
-  // Starting from current radial position of track <t> this function
+  // Starting from current X-position of track <t> this function
   // extrapolates the track up to radial position <xToGo>. 
   // Returns 1 if track reaches the plane, and 0 otherwise 
   //
 
   const Double_t kEpsilon = 0.00001;
-  //Double_t tanmax = TMath::Tan(0.5*AliTRDgeometry::GetAlpha()); 
+
+  // Current track X-position
   Double_t xpos = t.GetX();
-  Double_t dir  = (xpos<xToGo) ? 1.0 : -1.0;
 
-  while (((xToGo-xpos)*dir) > kEpsilon) {
+  // Direction: inward or outward
+  Double_t dir  = (xpos < xToGo) ? 1.0 : -1.0;
 
-    Double_t step = dir * TMath::Min(TMath::Abs(xToGo-xpos),maxStep);
+  while (((xToGo - xpos) * dir) > kEpsilon) {
 
     Double_t xyz0[3];
     Double_t xyz1[3];
@@ -1257,23 +1175,39 @@ Int_t AliTRDtracker::PropagateToX(AliTRDtrack &t, Double_t xToGo, Double_t maxSt
     Double_t x;
     Double_t y;
     Double_t z;
-    // Starting global position
-    t.GetXYZ(xyz0);   
+
+    // The next step size
+    Double_t step = dir * TMath::Min(TMath::Abs(xToGo-xpos),maxStep);
+
+    // Get the global position of the starting point
+    t.GetXYZ(xyz0);
+
+    // X-position after next step
     x = xpos + step;
 
+    // Get local Y and Z at the X-position of the next step
     if (!t.GetProlongation(x,y,z)) {
-      return 0; // No prolongation
+      return 0; // No prolongation possible
     }
 
+    // The global position of the end point of this prolongation step
     xyz1[0] =  x * TMath::Cos(t.GetAlpha()) - y * TMath::Sin(t.GetAlpha()); 
     xyz1[1] = +x * TMath::Sin(t.GetAlpha()) + y * TMath::Cos(t.GetAlpha());
     xyz1[2] =  z;
 
-    AliTracker::MeanMaterialBudget(xyz0,xyz1,param);   
+    // Calculate the mean material budget between start and
+    // end point of this prolongation step
+    AliTracker::MeanMaterialBudget(xyz0,xyz1,param);
+
+    // Propagate the track to the X-position after the next step
     if (!t.PropagateTo(x,param[1],param[0]*param[4])) {
       return 0;
     }
+
+    // Rotate the track if necessary
     AdjustSector(&t);
+
+    // New track X-position
     xpos = t.GetX();
 
   }
@@ -1291,47 +1225,41 @@ Int_t AliTRDtracker::LoadClusters(TTree *cTree)
   // differs from that of TRD sectors
   //
 
-  if (ReadClusters(fClusters,cTree)) {
-     AliError("Problem with reading the clusters !");
-     return 1;
+       
+  if (ReadClusters(fClusters, cTree)) {
+    AliError("Problem with reading the clusters !");
+    return 1;
   }
-  Int_t ncl = fClusters->GetEntriesFast();
+  Int_t ncl  = fClusters->GetEntriesFast();
   fNclusters = ncl;
   AliInfo(Form("Sorting %d clusters",ncl));
               
   UInt_t index;
-  for (Int_t ichamber = 0; ichamber <  5; ichamber++) {
-    for (Int_t isector  = 0; isector  < 18;  isector++) {
-      fHoles[ichamber][isector] = kTRUE;
-    }
-  }
-
   while (ncl--) {
 
     AliTRDcluster *c = (AliTRDcluster *) fClusters->UncheckedAt(ncl);
     Int_t detector       = c->GetDetector();
     Int_t localTimeBin   = c->GetLocalTimeBin();
     Int_t sector         = fGeom->GetSector(detector);
-    Int_t plane          = fGeom->GetPlane(detector);
+    Int_t layer          = fGeom->GetLayer(detector);
     Int_t trackingSector = sector;
 
-    if (c->GetQ() > 10) {
-      Int_t chamber = fGeom->GetChamber(detector);
-      fHoles[chamber][trackingSector] = kFALSE;
-    }
+    //if (c->GetQ() > 10) {
+    //  Int_t stack = fGeom->GetStack(detector);
+    //}
 
-    Int_t gtb   = fTrSec[trackingSector]->CookTimeBinIndex(plane,localTimeBin);
+    Int_t gtb   = fTrSec[trackingSector]->CookTimeBinIndex(layer,localTimeBin);
     if (gtb < 0) {
       continue; 
     }
-    Int_t layer = fTrSec[trackingSector]->GetLayerNumber(gtb);
+    Int_t trLayer = fTrSec[trackingSector]->GetLayerNumber(gtb);
 
     index = ncl;
 
     fHXCl->Fill(c->GetX());
 
-    fTrSec[trackingSector]->GetLayer(layer)->SetX(c->GetX());
-    fTrSec[trackingSector]->GetLayer(layer)->InsertCluster(c,index);
+    fTrSec[trackingSector]->GetLayer(trLayer)->SetX(c->GetX());
+    fTrSec[trackingSector]->GetLayer(trLayer)->InsertCluster(c,index);
 
   }
 
@@ -1365,7 +1293,7 @@ void AliTRDtracker::UnloadClusters()
     delete fTracks->RemoveAt(i);
   }
 
-  Int_t nsec = AliTRDgeometry::kNsect;
+  Int_t nsec = AliTRDgeometry::kNsector;
   for (i = 0; i < nsec; i++) {    
     for(Int_t pl = 0; pl < fTrSec[i]->GetNumberOfLayers(); pl++) {
       fTrSec[i]->GetLayer(pl)->Clear();
@@ -1375,7 +1303,7 @@ void AliTRDtracker::UnloadClusters()
 }
 
 //_____________________________________________________________________________
-void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *esd)
+Int_t AliTRDtracker::Clusters2Tracks(AliESDEvent *esd)
 {
   //
   // Creates  seeds using clusters between  position inner plane  and outer plane 
@@ -1394,7 +1322,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
   const Double_t kRoad2z   = 20.0; // Road in z for extrapolated cluster
   const Int_t    kMaxSeed  = 3000;
 
-  Int_t maxSec = AliTRDgeometry::kNsect;  
+  Int_t maxSec = AliTRDgeometry::kNsector;  
 
   // Linear fitters in planes
   TLinearFitter fitterTC(2,"hyp2");  // Fitting with tilting pads - kz fixed - kz= Z/x, + vertex const
@@ -1413,17 +1341,17 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
   }
   for (Int_t ns = 0; ns < maxSec; ns++) {
     for (Int_t ilayer = 0; ilayer < fTrSec[ns]->GetNumberOfLayers(); ilayer++) {
-      AliTRDpropagationLayer &layer = *(fTrSec[ns]->GetLayer(ilayer));
-      if (layer == 0) {
+      AliTRDpropagationLayer &propLayer = *(fTrSec[ns]->GetLayer(ilayer));
+      if (propLayer == 0) {
         continue;
       }
-      Int_t det   = layer[0]->GetDetector();    
-      Int_t plane = fGeom->GetPlane(det);
-      if (ilayer < layers[plane][0]) {
-        layers[plane][0] = ilayer;
+      Int_t det   = propLayer[0]->GetDetector();    
+      Int_t layer = fGeom->GetLayer(det);
+      if (ilayer < layers[layer][0]) {
+        layers[layer][0] = ilayer;
       }
-      if (ilayer > layers[plane][1]) {
-        layers[plane][1] = ilayer;
+      if (ilayer > layers[layer][1]) {
+        layers[layer][1] = ilayer;
       }
     }
   }
@@ -1635,7 +1563,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
               isFake = kTRUE;
            }
 
-           if (AliTRDReconstructor::StreamLevel() > 0) {
+           if (fReconstructor->GetStreamLevel(AliTRDReconstructor::kTracker) > 0) {
              if ((!isFake) || ((icl3%10) == 0)) {  // Debugging print
                TTreeSRedirector &cstream = *fDebugStreamer;
                cstream << "Seeds0"
@@ -1681,7 +1609,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
              cseed[sLayer+jLayer].SetPadLength(padlength[sLayer+jLayer]);
              cseed[sLayer+jLayer].SetX0(xcl[sLayer+jLayer]);
 
-             for (Int_t iter = 0; iter < 2; iter++) {
+             for (Int_t jter = 0; jter < 2; jter++) {
 
                //
                // In iteration 0 we try only one pad-row
@@ -1689,7 +1617,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
                //
                AliTRDseed tseed = cseed[sLayer+jLayer];
                Float_t    roadz = padlength[sLayer+jLayer] * 0.5;
-               if (iter > 0) {
+               if (jter > 0) {
                   roadz = padlength[sLayer+jLayer];
                }
 
@@ -1701,7 +1629,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
                  Double_t dxlayer = layer.GetX() - xcl[sLayer+jLayer];          
                  Double_t zexp    = cl[sLayer+jLayer]->GetZ();
 
-                 if (iter > 0) {
+                 if (jter > 0) {
                    // Try 2 pad-rows in second iteration
                    zexp = tseed.GetZref(0) + tseed.GetZref(1) * dxlayer;
                    if (zexp > cl[sLayer+jLayer]->GetZ()) {
@@ -1717,13 +1645,13 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
                  if (index <= 0) {
                     continue; 
                  }
-                 AliTRDcluster *cl = (AliTRDcluster *) GetCluster(index);            
+                 AliTRDcluster *clu = (AliTRDcluster *) GetCluster(index);           
 
                  tseed.SetIndexes(iTime,index);
-                 tseed.SetClusters(iTime,cl);  // Register cluster
-                 tseed.SetX(iTime,dxlayer);    // Register cluster
-                 tseed.SetY(iTime,cl->GetY()); // Register cluster
-                 tseed.SetZ(iTime,cl->GetZ()); // Register cluster
+                 tseed.SetClusters(iTime,clu);  // Register cluster
+                 tseed.SetX(iTime,dxlayer);     // Register cluster
+                 tseed.SetY(iTime,clu->GetY()); // Register cluster
+                 tseed.SetZ(iTime,clu->GetZ()); // Register cluster
 
                }
 
@@ -1734,7 +1662,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
                Float_t tquality = (18.0 - tseed.GetN2()) / 2.0 + TMath::Abs(dangle) / 0.1
                                  + TMath::Abs(tseed.GetYfit(0) - tseed.GetYref(0))   / 0.2
                                  + 2.0 * TMath::Abs(tseed.GetMeanz() - tseed.GetZref(0)) / padlength[jLayer];
-               if ((iter == 0) && tseed.IsOK()) {
+               if ((jter == 0) && tseed.IsOK()) {
                  cseed[sLayer+jLayer] = tseed;
                  quality              = tquality;
                  if (tquality < 5) {
@@ -1745,7 +1673,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
                  cseed[sLayer+jLayer] = tseed;
                }
        
-             } // Loop: iter
+             } // Loop: jter
 
              if (!cseed[sLayer+jLayer].IsOK()) {
                isOK = kFALSE;
@@ -1886,7 +1814,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
              Float_t  zexp   = cseed[jLayer].GetZref(0);
              Double_t zroad  = padlength[jLayer] * 0.5 + 1.0;
 
-             for (Int_t iter = 0; iter < 2; iter++) {
+             for (Int_t jter = 0; jter < 2; jter++) {
 
                AliTRDseed tseed = cseed[jLayer];
                Float_t quality = 10000.0;
@@ -1900,12 +1828,12 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
                  if (index <= 0) {
                     continue; 
                  }
-                 AliTRDcluster *cl = (AliTRDcluster *) GetCluster(index);            
+                 AliTRDcluster *clu = (AliTRDcluster *) GetCluster(index);           
                  tseed.SetIndexes(iTime,index);
-                 tseed.SetClusters(iTime,cl);  // Register cluster
-                 tseed.SetX(iTime,dxlayer);    // Register cluster
-                 tseed.SetY(iTime,cl->GetY()); // Register cluster
-                 tseed.SetZ(iTime,cl->GetZ()); // Register cluster
+                 tseed.SetClusters(iTime,clu);  // Register cluster
+                 tseed.SetX(iTime,dxlayer);     // Register cluster
+                 tseed.SetY(iTime,clu->GetY()); // Register cluster
+                 tseed.SetZ(iTime,clu->GetZ()); // Register cluster
                }
 
                tseed.Update();
@@ -1922,7 +1850,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
 
                zroad *= 2.0;
 
-             } // Loop: iter
+             } // Loop: jter
 
              if ( cseed[jLayer].IsOK()) {
                cseed[jLayer].CookLabels();
@@ -1942,7 +1870,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
            Float_t lastchi2    = 10000.0;
            Float_t chi2        =  1000.0;
 
-           for (Int_t iter = 0; iter < 4; iter++) {
+           for (Int_t jter = 0; jter < 4; jter++) {
 
              // Sort tracklets according "quality", try to "improve" 4 worst 
              Float_t sumquality = 0.0;
@@ -1971,7 +1899,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
              }
              lastquality = sumquality;  
              lastchi2    = chi2;
-             if (iter > 0) {
+             if (jter > 0) {
                for (Int_t jLayer = 0; jLayer < 6; jLayer++) {
                  cseed[jLayer] = bseed[jLayer];
                }
@@ -2006,13 +1934,13 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
                  if (index <= 0) {
                     continue; 
                  }
-                 AliTRDcluster *cl = (AliTRDcluster *) GetCluster(index);            
+                 AliTRDcluster *clu = (AliTRDcluster *) GetCluster(index);           
 
                  tseed.SetIndexes(iTime,index);
-                 tseed.SetClusters(iTime,cl);  // Register cluster
-                 tseed.SetX(iTime,dxlayer);    // Register cluster
-                 tseed.SetY(iTime,cl->GetY()); // Register cluster
-                 tseed.SetZ(iTime,cl->GetZ()); // Register cluster
+                 tseed.SetClusters(iTime,clu);  // Register cluster
+                 tseed.SetX(iTime,dxlayer);     // Register cluster
+                 tseed.SetY(iTime,clu->GetY()); // Register cluster
+                 tseed.SetZ(iTime,clu->GetZ()); // Register cluster
 
                }
 
@@ -2033,7 +1961,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
 
              chi2 = AliTRDseed::FitRiemanTilt(bseed,kTRUE);
 
-           } // Loop: iter
+           } // Loop: jter
 
            nclusters = 0;
            nlayers   = 0;
@@ -2273,7 +2201,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
            if (1 || (!isFake)) {
              Float_t zvertex = GetZ();
              TTreeSRedirector &cstream = *fDebugStreamer;
-             if (AliTRDReconstructor::StreamLevel() > 0) {
+             if (fReconstructor->GetStreamLevel(AliTRDReconstructor::kTracker) > 0) {
                cstream << "Seeds1"
                        << "isFake="     << isFake
                        << "Vertex="     << zvertex
@@ -2356,7 +2284,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
       signedseed[i] = kFALSE;
     }
 
-    for (Int_t iter = 0; iter < 5; iter++) {
+    for (Int_t jter = 0; jter < 5; jter++) {
 
       for (Int_t iseed = 0; iseed < registered; iseed++) {
       
@@ -2404,7 +2332,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
           continue;
        }
 
-       if (iter == 0) {
+       if (jter == 0) {
          if (nlayers < 6) {
             continue;
          }
@@ -2413,7 +2341,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
          }
        }
 
-       if (iter == 1) {
+       if (jter == 1) {
          if (nlayers < findable) {
             continue;
          }
@@ -2422,7 +2350,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
          }
        }
 
-       if (iter == 2) {
+       if (jter == 2) {
          if ((nlayers == findable) || 
               (nlayers ==        6)) {
             continue;
@@ -2432,13 +2360,13 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
          }
        }
 
-       if (iter == 3) {
+       if (jter == 3) {
          if (TMath::Log(0.000000001+seedquality2[index]) < -5.0) {
             continue;
          }
        }
 
-       if (iter == 4) {
+       if (jter == 4) {
          if (TMath::Log(0.000000001+seedquality2[index]) - nused/(nlayers-3.0) < -15.0) {
             continue;
          }
@@ -2494,8 +2422,7 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
          esdtrack.UpdateTrackParams(track,AliESDtrack::kTRDout);
          esdtrack.SetLabel(label);
          esd->AddTrack(&esdtrack);     
-         TTreeSRedirector &cstream = *fDebugStreamer;
-         if (AliTRDReconstructor::StreamLevel() > 0) {
+         if (fReconstructor->GetStreamLevel(AliTRDReconstructor::kTracker) > 0) {
            cstream << "Tracks"
                    << "EventNrInFile="  << eventNrInFile
                    << "ESD.="     << &esdtrack
@@ -2505,9 +2432,9 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
          }
        }
 
-       if (AliTRDReconstructor::StreamLevel() > 0) {
+       if (fReconstructor->GetStreamLevel(AliTRDReconstructor::kTracker) > 0) {
          cstream << "Seeds2"
-                 << "Iter="      << iter
+                 << "Iter="      << jter
                  << "Track.="    << track
                  << "Like="      << seedquality[index]
                  << "LikeF="     << seedquality2[index]
@@ -2533,20 +2460,21 @@ void AliTRDtracker::MakeSeedsMI(Int_t /*inner*/, Int_t /*outer*/, AliESDEvent *e
 
       } // Loop: iseed
 
-    } // Loop: iter
+    } // Loop: jter
 
   } // End of loop over sectors
 
   delete [] pseed;
 
+       return 0;
 }
           
 //_____________________________________________________________________________
 Int_t AliTRDtracker::ReadClusters(TObjArray *array, TTree *clusterTree) const
 {
   //
-  // Reads AliTRDclusters (option >= 0) or AliTRDrecPoints (option < 0) 
-  // from the file. The names of the cluster tree and branches 
+  // Reads AliTRDclusters from the file. 
+  // The names of the cluster tree and branches 
   // should match the ones used in AliTRDclusterizer::WriteClusters()
   //
 
@@ -2563,7 +2491,7 @@ Int_t AliTRDtracker::ReadClusters(TObjArray *array, TTree *clusterTree) const
   // Loop through all entries in the tree
   Int_t nEntries   = (Int_t) clusterTree->GetEntries();
   Int_t nbytes     = 0;
-  AliTRDcluster *c = 0;
+  AliTRDcluster *c = 0x0;
   for (Int_t iEntry = 0; iEntry < nEntries; iEntry++) {    
     
     // Import the tree
@@ -2571,17 +2499,15 @@ Int_t AliTRDtracker::ReadClusters(TObjArray *array, TTree *clusterTree) const
     
     // Get the number of points in the detector
     Int_t nCluster = clusterArray->GetEntriesFast();  
-    
     // Loop through all TRD digits
     for (Int_t iCluster = 0; iCluster < nCluster; iCluster++) { 
-      c = (AliTRDcluster *) clusterArray->UncheckedAt(iCluster);
-      AliTRDcluster *co = c;
-      array->AddLast(co);
+      if(!(c = (AliTRDcluster *) clusterArray->UncheckedAt(iCluster))) continue;
+      array->AddLast(c);
+                       //printf("Add cluster 0x%x.\n", c);
       clusterArray->RemoveAt(iCluster); 
     }
 
   }
-
   delete clusterArray;
 
   return 0;
@@ -2597,40 +2523,40 @@ Bool_t AliTRDtracker::GetTrackPoint(Int_t index, AliTrackPoint &p) const
   //
 
   AliTRDcluster *cl = (AliTRDcluster *) fClusters->UncheckedAt(index);
-  Int_t  idet     = cl->GetDetector();
-  Int_t  isector  = fGeom->GetSector(idet);
-  Int_t  ichamber = fGeom->GetChamber(idet);
-  Int_t  iplan    = fGeom->GetPlane(idet);
+  Int_t  idet    = cl->GetDetector();
+  Int_t  isector = fGeom->GetSector(idet);
+  Int_t  istack  = fGeom->GetStack(idet);
+  Int_t  ilayer  = fGeom->GetLayer(idet);
   Double_t local[3];
-  local[0] = GetX(isector,iplan,cl->GetLocalTimeBin());
+  local[0] = GetX(isector,ilayer,cl->GetLocalTimeBin());
   local[1] = cl->GetY();
   local[2] = cl->GetZ();
   Double_t global[3];
   fGeom->RotateBack(idet,local,global);
   p.SetXYZ(global[0],global[1],global[2]);
-  AliGeomManager::ELayerID iLayer = AliGeomManager::kTRD1;
-  switch (iplan) {
+  AliGeomManager::ELayerID iGeoLayer = AliGeomManager::kTRD1;
+  switch (ilayer) {
   case 0:
-    iLayer = AliGeomManager::kTRD1;
+    iGeoLayer = AliGeomManager::kTRD1;
     break;
   case 1:
-    iLayer = AliGeomManager::kTRD2;
+    iGeoLayer = AliGeomManager::kTRD2;
     break;
   case 2:
-    iLayer = AliGeomManager::kTRD3;
+    iGeoLayer = AliGeomManager::kTRD3;
     break;
   case 3:
-    iLayer = AliGeomManager::kTRD4;
+    iGeoLayer = AliGeomManager::kTRD4;
     break;
   case 4:
-    iLayer = AliGeomManager::kTRD5;
+    iGeoLayer = AliGeomManager::kTRD5;
     break;
   case 5:
-    iLayer = AliGeomManager::kTRD6;
+    iGeoLayer = AliGeomManager::kTRD6;
     break;
   };
-  Int_t    modId = isector * fGeom->Ncham() + ichamber;
-  UShort_t volid = AliGeomManager::LayerToVolUID(iLayer,modId);
+  Int_t    modId = isector * fGeom->Nstack() + istack;
+  UShort_t volid = AliGeomManager::LayerToVolUID(iGeoLayer,modId);
   p.SetVolumeID(volid);
 
   return kTRUE;
@@ -2736,11 +2662,11 @@ void AliTRDtracker::UseClusters(const AliKalmanTrack *t, Int_t from) const
   for (Int_t i = from; i < ncl; i++) {
     Int_t index  = t->GetClusterIndex(i);
     AliTRDcluster *c = (AliTRDcluster *) fClusters->UncheckedAt(index);
-    Int_t iplane = fGeom->GetPlane(c->GetDetector());
-    if (track->GetTracklets(iplane).GetChi2() > kmaxchi2) {
+    Int_t ilayer = fGeom->GetLayer(c->GetDetector());
+    if (track->GetTracklets(ilayer).GetChi2() > kmaxchi2) {
       continue; 
     }
-    if (track->GetTracklets(iplane).GetN()    <   kmincl) {
+    if (track->GetTracklets(ilayer).GetN()    <   kmincl) {
       continue; 
     }
     if (!(c->IsUsed())) {
@@ -2789,68 +2715,6 @@ Double_t AliTRDtracker::GetX(Int_t sector, Int_t plane, Int_t localTB) const
 
 }
 
-//_____________________________________________________________________________
-AliTRDtracker::AliTRDpropagationLayer
-             ::AliTRDpropagationLayer(Double_t x, Double_t dx, Double_t rho
-                                    , Double_t radLength, Int_t tbIndex, Int_t plane)
-  :fN(0)
-  ,fSec(0)
-  ,fClusters(NULL)
-  ,fIndex(NULL)
-  ,fX(x)
-  ,fdX(dx)
-  ,fRho(rho)
-  ,fX0(radLength)
-  ,fTimeBinIndex(tbIndex)
-  ,fPlane(plane)
-  ,fYmax(0)
-  ,fYmaxSensitive(0)
-  ,fHole(kFALSE)
-  ,fHoleZc(0)
-  ,fHoleZmax(0)
-  ,fHoleYc(0)
-  ,fHoleYmax(0)
-  ,fHoleRho(0)
-  ,fHoleX0(0)
-{ 
-  //
-  // AliTRDpropagationLayer constructor
-  //
-
-  for (Int_t i = 0; i < (Int_t) kZones; i++) {
-    fZc[i]   = 0; 
-    fZmax[i] = 0;
-  }
-
-  if (fTimeBinIndex >= 0) { 
-    fClusters = new AliTRDcluster*[kMaxClusterPerTimeBin];
-    fIndex    = new UInt_t[kMaxClusterPerTimeBin];
-  }
-
-  for (Int_t i = 0; i < 5; i++) {
-    fIsHole[i] = kFALSE;
-  }
-
-}
-
-//_____________________________________________________________________________
-void AliTRDtracker::AliTRDpropagationLayer
-                  ::SetHole(Double_t Zmax, Double_t Ymax, Double_t rho
-                          , Double_t radLength, Double_t Yc, Double_t Zc) 
-{
-  //
-  // Sets hole in the layer 
-  //
-
-  fHole     = kTRUE;
-  fHoleZc   = Zc;
-  fHoleZmax = Zmax;
-  fHoleYc   = Yc;
-  fHoleYmax = Ymax;
-  fHoleRho  = rho;
-  fHoleX0   = radLength;
-
-}
 
 //_____________________________________________________________________________
 AliTRDtracker::AliTRDtrackingSector
@@ -2867,9 +2731,9 @@ AliTRDtracker::AliTRDtrackingSector
   AliTRDpropagationLayer *ppl = 0;
 
   // Get holes description from geometry
-  Bool_t holes[AliTRDgeometry::kNcham];
-  for (Int_t icham = 0; icham < AliTRDgeometry::kNcham; icham++) {
-    holes[icham] = fGeom->IsHole(0,icham,gs);
+  Bool_t holes[AliTRDgeometry::kNstack];
+  for (Int_t istack = 0; istack < AliTRDgeometry::kNstack; istack++) {
+    holes[istack] = fGeom->IsHole(0,istack,gs);
   } 
   
   for (UInt_t i = 0; i < kMaxTimeBinIndex; i++) {
@@ -2885,37 +2749,41 @@ AliTRDtracker::AliTRDtrackingSector
   Double_t dxAmp   = (Double_t) fGeom->CamHght(); // Amplification region
   //Double_t dxDrift = (Double_t) fGeom->CdrHght(); // Drift region  
 
-  const Int_t kNchambers  = AliTRDgeometry::Ncham();
+  const Int_t kNstacks  = AliTRDgeometry::Nstack();
   Int_t    tbIndex;
   Double_t ymax           = 0;
   Double_t ymaxsensitive  = 0;
-  Double_t *zc            = new Double_t[kNchambers];
-  Double_t *zmax          = new Double_t[kNchambers];
-  Double_t *zmaxsensitive = new Double_t[kNchambers];  
+  Double_t *zc            = new Double_t[kNstacks];
+  Double_t *zmax          = new Double_t[kNstacks];
+  Double_t *zmaxsensitive = new Double_t[kNstacks];  
     
-  for (Int_t plane = 0; plane < AliTRDgeometry::Nplan(); plane++) {
+  for (Int_t layer = 0; layer < AliTRDgeometry::Nlayer(); layer++) {
 
-    ymax          = fGeom->GetChamberWidth(plane) / 2.0;
-    padPlane      = fGeom->GetPadPlane(plane,0);
+    ymax          = fGeom->GetChamberWidth(layer) / 2.0;
+    padPlane      = fGeom->GetPadPlane(layer,0);
     ymaxsensitive = (padPlane->GetColSize(1) * padPlane->GetNcols() - 4.0) / 2.0;    
 
-    for (Int_t ch = 0; ch < kNchambers; ch++) {
-      zmax[ch]          = fGeom->GetChamberLength(plane,ch) / 2.0;
+    for (Int_t st = 0; st < kNstacks; st++) {
+      zmax[st]          = fGeom->GetChamberLength(layer,st) / 2.0;
       Float_t pad       = padPlane->GetRowSize(1);
-      Float_t row0      = fGeom->GetRow0(plane,ch,0);
-      Int_t   nPads     = fGeom->GetRowMax(plane,ch,0);
-      zmaxsensitive[ch] = Float_t(nPads) * pad / 2.0;      
-      zc[ch]            = -(pad * nPads) / 2.0 + row0;
+      Float_t row0      = fGeom->GetRow0(layer,st,0);
+      Int_t   nPads     = fGeom->GetRowMax(layer,st,0);
+      zmaxsensitive[st] = Float_t(nPads) * pad / 2.0;      
+      zc[st]            = -(pad * nPads) / 2.0 + row0;
     }
 
-    dx        = AliTRDcalibDB::Instance()->GetVdrift(0,0,0)
+               AliTRDcalibDB *fCalibration = AliTRDcalibDB::Instance();
+    dx        = fCalibration->GetVdrift(0,0,0)
               / AliTRDCommonParam::Instance()->GetSamplingFrequency();
     rho       = 0.00295 * 0.85; //????
     radLength = 11.0;  
 
-    Double_t x0 = (Double_t) AliTRDgeometry::GetTime0(plane);
+    Double_t x0 = (Double_t) AliTRDgeometry::GetTime0(layer);
     //Double_t xbottom = x0 - dxDrift;
     //Double_t xtop    = x0 + dxAmp;
+               
+               //temporary !! (A.Bercuci)
+    Int_t T0 = (Int_t)fCalibration->GetT0Average(AliTRDgeometry::GetDetector(layer, 2, gs));
 
     Int_t nTimeBins =  AliTRDcalibDB::Instance()->GetNumberOfTimeBins();    
     for (Int_t iTime = 0; iTime < nTimeBins; iTime++) {
@@ -2924,12 +2792,14 @@ AliTRDtracker::AliTRDtrackingSector
       //if (xlayer<0) xlayer = dxAmp / 2.0;
       x = x0 - xlayer;
 
-      tbIndex = CookTimeBinIndex(plane,iTime);
-      ppl     = new AliTRDpropagationLayer(x,dx,rho,radLength,tbIndex,plane);
+      tbIndex = CookTimeBinIndex(layer,iTime);
+      ppl     = new AliTRDpropagationLayer(x,dx,rho,radLength,tbIndex,layer);
       ppl->SetYmax(ymax,ymaxsensitive);
       ppl->SetZ(zc,zmax,zmaxsensitive);
       ppl->SetHoles(holes);
-      InsertLayer(ppl);      
+      if(iTime == T0) ppl->SetT0();
+                       
+                       InsertLayer(ppl);      
 
     }
 
@@ -2956,14 +2826,28 @@ AliTRDtracker::AliTRDtrackingSector
 
 }
 
+//_____________________________________________________________________________
+AliTRDtracker::AliTRDtrackingSector
+             ::~AliTRDtrackingSector()
+{
+  //
+  // Destructor
+  //
+
+  for (Int_t i = 0; i < fN; i++) {
+    delete fLayers[i]; 
+  }
+
+}
+
 //_____________________________________________________________________________
 Int_t  AliTRDtracker::AliTRDtrackingSector
                     ::CookTimeBinIndex(Int_t plane, Int_t localTB) const
 {
   //
-  // depending on the digitization parameters calculates "global"
-  // time bin index for timebin <localTB> in plane <plane>
-  //
+  // Depending on the digitization parameters calculates global
+  // (i.e. for a whole TRD stack of 6 planes) time bin index for 
+  // timebin <localTB> in plane <plane>
   //
 
   Int_t tbPerPlane = AliTRDcalibDB::Instance()->GetNumberOfTimeBins();
@@ -3153,140 +3037,6 @@ Int_t AliTRDtracker::AliTRDtrackingSector
 
 }             
 
-//_____________________________________________________________________________
-void AliTRDtracker::AliTRDpropagationLayer
-                  ::SetZ(Double_t *center, Double_t *w, Double_t *wsensitive )
-{
-  //
-  // set centers and the width of sectors
-  //
-
-  for (Int_t icham = 0; icham < AliTRDgeometry::kNcham; icham++) {
-    fZc[icham]            = center[icham];  
-    fZmax[icham]          = w[icham];
-    fZmaxSensitive[icham] = wsensitive[icham];
-  }  
-
-}
-
-//_____________________________________________________________________________
-void AliTRDtracker::AliTRDpropagationLayer::SetHoles(Bool_t *holes)
-{
-  //
-  // set centers and the width of sectors
-  //
-
-  fHole = kFALSE;
-
-  for (Int_t icham = 0; icham < AliTRDgeometry::kNcham; icham++) {
-    fIsHole[icham] = holes[icham]; 
-    if (holes[icham]) {
-      fHole = kTRUE;
-    }
-  }  
-
-}
-
-//_____________________________________________________________________________
-void AliTRDtracker::AliTRDpropagationLayer
-                  ::InsertCluster(AliTRDcluster *c, UInt_t index) 
-{
-  //
-  // Insert cluster in cluster array.
-  // Clusters are sorted according to Y coordinate.  
-  //
-
-  if (fTimeBinIndex < 0) { 
-    //AliWarning("Attempt to insert cluster into non-sensitive time bin!\n");
-    return;
-  }
-
-  if (fN == (Int_t) kMaxClusterPerTimeBin) {
-    //AliWarning("Too many clusters !\n"); 
-    return;
-  }
-
-  if (fN == 0) {
-    fIndex[0]       = index; 
-    fClusters[fN++] = c; 
-    return;
-  }
-
-  Int_t i = Find(c->GetY());
-  memmove(fClusters+i+1,fClusters+i,(fN-i)*sizeof(AliTRDcluster*));
-  memmove(fIndex   +i+1,fIndex   +i,(fN-i)*sizeof(UInt_t)); 
-  fIndex[i]    = index; 
-  fClusters[i] = c; 
-  fN++;
-
-}  
-
-//_____________________________________________________________________________
-Int_t AliTRDtracker::AliTRDpropagationLayer::Find(Float_t y) const 
-{
-  //
-  // Returns index of the cluster nearest in Y    
-  //
-
-  if (fN <= 0) {
-    return 0;
-  }
-  if (y <= fClusters[0]->GetY()) {
-    return 0;
-  }
-  if (y >  fClusters[fN-1]->GetY()) {
-    return fN;
-  }
-
-  Int_t b = 0;
-  Int_t e = fN - 1;
-  Int_t m = (b + e) / 2;
-
-  for ( ; b < e; m = (b + e) / 2) {
-    if (y > fClusters[m]->GetY()) {
-      b = m + 1;
-    }
-    else {
-      e = m;
-    }
-  }
-
-  return m;
-
-}    
-
-//_____________________________________________________________________________
-Int_t AliTRDtracker::AliTRDpropagationLayer
-                   ::FindNearestCluster(Float_t y, Float_t z, Float_t maxroad
-                                      , Float_t maxroadz) const 
-{
-  //
-  // Returns index of the cluster nearest to the given y,z
-  //
-
-  Int_t   index   = -1;
-  Int_t   maxn    = fN;
-  Float_t mindist = maxroad;                   
-
-  for (Int_t i = Find(y-maxroad); i < maxn; i++) {
-    AliTRDcluster *c = (AliTRDcluster *) (fClusters[i]);
-    Float_t ycl = c->GetY();
-    if (ycl > (y + maxroad)) {
-      break;
-    }
-    if (TMath::Abs(c->GetZ() - z) > maxroadz) {
-      continue;
-    }
-    if (TMath::Abs(ycl - y)       < mindist) {
-      mindist = TMath::Abs(ycl - y);
-      index   = fIndex[i];
-    }
-  }                                            
-
-  return index;
-
-}             
-
 //_____________________________________________________________________________
 Double_t AliTRDtracker::GetTiltFactor(const AliTRDcluster *c) 
 {
@@ -3295,8 +3045,8 @@ Double_t AliTRDtracker::GetTiltFactor(const AliTRDcluster *c)
   //
 
   Int_t    det   = c->GetDetector();    
-  Int_t    plane = fGeom->GetPlane(det);
-  AliTRDpadPlane *padPlane = fGeom->GetPadPlane(plane,0);
+  Int_t    layer = fGeom->GetLayer(det);
+  AliTRDpadPlane *padPlane = fGeom->GetPadPlane(layer,0);
   Double_t h01   = TMath::Tan(-TMath::Pi() / 180.0 * padPlane->GetTiltingAngle());
 
   if (fNoTilt) {
@@ -3307,46 +3057,55 @@ Double_t AliTRDtracker::GetTiltFactor(const AliTRDcluster *c)
 
 }
 
-
 //_____________________________________________________________________________
 Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
                                 , AliTRDtrack *track
-                                , Int_t *clusters, AliTRDtracklet &tracklet)
+                                , Int_t *clusters
+                                , AliTRDtracklet &tracklet)
 {
   //
-  //
-  // Try to find nearest clusters to the track in timebins from t0 to t1 
-  //  
+  // Try to find the nearest clusters to the track in the time bins 
+  // between <t0> and <t1>. 
+  // Also the corresponding tracklet is calculated
   // Correction coeficients - depend on TRD parameters - to be changed accordingly
   //
 
-  Double_t x[100];
-  Double_t yt[100];
-  Double_t zt[100];
-  Double_t xmean = 0.0;       // Reference x
-  Double_t dz[10][100];
-  Double_t dy[10][100];
-  Float_t  zmean[100];
-  Float_t  nmean[100];
+  const Int_t    kN1 = 100;
+  const Int_t    kN2 = 10;
+
+  Double_t       x[kN1];
+  Double_t       yt[kN1];
+  Double_t       zt[kN1];
+  Float_t        zmean[kN1];
+  Float_t        nmean[kN1];
+
+  Double_t       dz[kN2][kN1];
+  Double_t       dy[kN2][kN1];
+  Int_t          indexes[kN2][kN1];  // Indexes of the clusters in the road
+  Int_t          best[kN2][kN1];     // Index of best matching cluster 
+  AliTRDcluster *cl[kN2][kN1];       // Pointers to the clusters in the road
+
+  Double_t xmean   = 0.0;            // Reference x
   Int_t    clfound = 0;
-  Int_t    indexes[10][100];  // Indexes of the clusters in the road
-  Int_t    best[10][100];     // Index of best matching cluster 
-  AliTRDcluster *cl[10][100]; // Pointers to the clusters in the road
-
-  for (Int_t it = 0; it < 100; it++) {
-    x[it]        = 0.0;
-    yt[it]       = 0.0;
-    zt[it]       = 0.0;
+
+  // Initialize the arrays
+  for (Int_t it = 0; it < kN1; it++) {
+
+    x[it]        =  0.0;
+    yt[it]       =  0.0;
+    zt[it]       =  0.0;
     clusters[it] = -2;
-    zmean[it]    = 0.0;
-    nmean[it]    = 0.0;
-    for (Int_t ih = 0; ih < 10;ih++) {
-      indexes[ih][it] = -2;   // Reset indexes1
+    zmean[it]    =  0.0;
+    nmean[it]    =  0.0;
+
+    for (Int_t ih = 0; ih < kN2; ih++) {
+      indexes[ih][it] = -2;
       cl[ih][it]      =  0;
       dz[ih][it]      = -100.0;
       dy[ih][it]      = -100.0;
       best[ih][it]    =  0;
     }
+
   }  
 
   Double_t x0        = track->GetX();
@@ -3354,9 +3113,10 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
   Int_t    nall      = 0;
   Int_t    nfound    = 0;
   Double_t h01       = 0.0;
-  Int_t    plane     = -1;
+  Int_t    layer     = -1;
   Int_t    detector  = -1;
   Float_t  padlength = 0.0;
+
   AliTRDtrack track2(* track);
   Float_t  snpy      = track->GetSnp();
   Float_t  tany      = TMath::Sqrt(snpy*snpy / (1.0 - snpy*snpy)); 
@@ -3370,7 +3130,6 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
   if (road > 6.0) {
     road = 6.0;
   }
-  //road = 20.0;
 
   for (Int_t it = 0; it < t1-t0; it++) {
 
@@ -3394,33 +3153,30 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
     //
     // Find 2 nearest cluster at given time bin
     // 
-    int checkPoint[4] = {0,0,0,0};
-    double minY = 123456789;
-    double minD[2] = {1,1};
+    Int_t    checkPoint[4] = { 0, 0, 0, 0 };
+    Double_t minY          = 123456789.0;
+    Double_t minD[2]       = { 1.0, 1.0 };
 
     for (Int_t i = timeBin.Find(y - road); i < maxn; i++) {
-      //for (Int_t i = 0; i < maxn; i++) {
 
       AliTRDcluster *c = (AliTRDcluster *) (timeBin[i]);
       h01 = GetTiltFactor(c);
-      if (plane < 0) {
+      if (layer < 0) {
        Int_t det = c->GetDetector();
-       plane     = fGeom->GetPlane(det);
+       layer     = fGeom->GetLayer(det);
        padlength = TMath::Sqrt(c->GetSigmaZ2() * 12.0);
       }
 
-      //if (c->GetLocalTimeBin()==0) continue;
       if (c->GetY() > (y + road)) {
         break;
       }
 
       fHDeltaX->Fill(c->GetX() - x[it]);
-      //printf("%f\t%f\t%f \n", c->GetX(),  x[it], c->GetX()-x[it]);
 
       if (TMath::Abs(c->GetY()-y) < TMath::Abs(minY)) {
-       minY = c->GetY()-y;
-       minD[0] = c->GetY()-y;
-       minD[1] = c->GetZ()-z;
+       minY    = c->GetY() - y;
+       minD[0] = c->GetY() - y;
+       minD[1] = c->GetZ() - z;
       }
 
       checkPoint[0]++;
@@ -3432,13 +3188,13 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
       checkPoint[1]++;
 
       Double_t dist = TMath::Abs(c->GetZ() - z);
-      if (dist > (0.5 * padlength + 6.0 * sigmaz)) { // 0.5
+      if (dist > (0.5 * padlength + 6.0 * sigmaz)) {
         continue;   // 6 sigma boundary cut
       }
       checkPoint[2]++;
 
-      Double_t cost = 0.0;
       // Sigma boundary cost function
+      Double_t cost = 0.0;
       if (dist> (0.5 * padlength - sigmaz)){ 
        cost =  (dist - 0.5*padlength) / (2.0 * sigmaz);
        if (cost > -1) {
@@ -3448,8 +3204,6 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
           cost = 0.0;
        }
       }
-      //Int_t label = TMath::Abs(track->GetLabel());
-      //if (c->GetLabel(0)!=label && c->GetLabel(1)!=label&&c->GetLabel(2)!=label) continue;
       chi2 = track2.GetPredictedChi2(c,h01) + cost;
       clfound++;      
 
@@ -3458,8 +3212,8 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
       }
       checkPoint[3]++;
 
-      detector = c->GetDetector();
       // Store the clusters in the road
+      detector = c->GetDetector();
       for (Int_t ih = 2; ih < 9; ih++) {  
        if (cl[ih][it] == 0) {
          cl[ih][it]      = c;
@@ -3483,15 +3237,19 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
 
     }
     
-    for(int iCheckPoint = 0; iCheckPoint<4; iCheckPoint++)
+    for(int iCheckPoint = 0; iCheckPoint<4; iCheckPoint++) {
       fHFindCl[iCheckPoint]->Fill(checkPoint[iCheckPoint]);
+    }
 
     if (checkPoint[3]) {
-      if (track->GetSignedPt() > 0) fHMinYPos->Fill(minY);
-      else fHMinYNeg->Fill(minY);
-
-    fHMinD->Fill(minD[0], minD[1]);
-     }
+      if (track->GetSignedPt() > 0) {
+        fHMinYPos->Fill(minY);
+      }
+      else {
+        fHMinYNeg->Fill(minY);
+      }
+      fHMinD->Fill(minD[0],minD[1]);
+    }
 
     if (cl[0][it]) {
       nfound++;
@@ -3509,7 +3267,6 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
   //
   // Choose one of the variants
   //
-  Int_t    changes[10];
   Float_t  sumz   = 0.0;
   Float_t  sum    = 0.0;
   Double_t sumdy  = 0.0;
@@ -3519,36 +3276,38 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
   Double_t sumx2  = 0.0;
   Double_t mpads  = 0.0;
 
-  Int_t    ngood[10];
-  Int_t    nbad[10];
+  Int_t    changes[kN2];
+
+  Int_t    ngood[kN2];
+  Int_t    nbad[kN2];
 
-  Double_t meanz[10];
-  Double_t moffset[10];    // Mean offset
-  Double_t mean[10];       // Mean value
-  Double_t angle[10];      // Angle
+  Double_t meanz[kN2];
+  Double_t moffset[kN2];    // Mean offset
+  Double_t mean[kN2];       // Mean value
+  Double_t angle[kN2];      // Angle
 
-  Double_t smoffset[10];   // Sigma of mean offset
-  Double_t smean[10];      // Sigma of mean value
-  Double_t sangle[10];     // Sigma of angle
-  Double_t smeanangle[10]; // Correlation
+  Double_t smoffset[kN2];   // Sigma of mean offset
+  Double_t smean[kN2];      // Sigma of mean value
+  Double_t sangle[kN2];     // Sigma of angle
+  Double_t smeanangle[kN2]; // Correlation
 
-  Double_t sigmas[10];     
-  Double_t tchi2s[10];     // Chi2s for tracklet
+  Double_t sigmas[kN2];     
+  Double_t tchi2s[kN2];     // Chi2s for tracklet
 
-  for (Int_t it = 0; it < 10; it++) {
+  for (Int_t it = 0; it < kN2; it++) {
 
     ngood[it]      = 0;
     nbad[it]       = 0;
 
     meanz[it]      = 0.0;
-    moffset[it]    = 0.0;    // Mean offset
-    mean[it]       = 0.0;    // Mean value
-    angle[it]      = 0.0;    // Angle
+    moffset[it]    = 0.0;   // Mean offset
+    mean[it]       = 0.0;   // Mean value
+    angle[it]      = 0.0;   // Angle
 
     smoffset[it]   = 1.0e5; // Sigma of mean offset
     smean[it]      = 1.0e5; // Sigma of mean value
     sangle[it]     = 1.0e5; // Sigma of angle
-    smeanangle[it] = 0.0;    // Correlation
+    smeanangle[it] = 0.0;   // Correlation
 
     sigmas[it]     = 1.0e5;     
     tchi2s[it]     = 1.0e5; // Chi2s for tracklet
@@ -3656,7 +3415,8 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
         changes[iter]++;
       }
 
-      Double_t dx = x[it]-xmean; // Distance to reference x
+      // Distance to reference x
+      Double_t dx = x[it]-xmean; 
       sumz   += cl[best[iter][it]][it]->GetZ();      
       sum++;
       sumdy  += dy[best[iter][it]][it];
@@ -3677,12 +3437,12 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
     }
 
     //
-    // calculates line parameters
+    // Calculates line parameters
     //
     Double_t det  = sum*sumx2 - sumx*sumx;
     angle[iter]   = (sum*sumxy - sumx*sumdy) / det;
     mean[iter]    = (sumx2*sumdy - sumx*sumxy) / det;
-    meanz[iter]   = sumz / sum;    
+    meanz[iter]   = sumz  / sum;    
     moffset[iter] = sumdy / sum;
     mpads        /= sum;   // Mean number of pads
 
@@ -3726,7 +3486,7 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
       Double_t mindist  = 100000.0; 
       Int_t    ihbest   = 0;
 
-      for (Int_t ih = 0; ih < 10; ih++) {
+      for (Int_t ih = 0; ih < kN2; ih++) {
        if (!cl[ih][it]) {
           break;
        }
@@ -3737,17 +3497,17 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
          ihbest  = ih;
        }
       }
+
       best[iter+1][it] = ihbest;
+
     }
 
     //
     // Update best hypothesy if better chi2 according tracklet position and angle
     //
-    Double_t sy2 = smean[iter]  + track->GetSigmaY2();
+             sy2 = smean[iter]  + track->GetSigmaY2();
     Double_t sa2 = sangle[iter] + track->GetSigmaSnp2(); // track->fCee;
     Double_t say = track->GetSigmaSnpY();                // track->fCey;
-    //Double_t chi20 = mean[bestiter]*mean[bestiter ] / sy2+angle[bestiter]*angle[bestiter]/sa2;
-    //Double_t chi21 = mean[iter]*mean[iter]          / sy2+angle[iter]*angle[iter]/sa2;
 
     Double_t detchi    = sy2*sa2 - say*say;
     Double_t invers[3] = {sa2/detchi,sy2/detchi,-say/detchi}; // Inverse value of covariance matrix  
@@ -3778,9 +3538,6 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
   Short_t  maxpos5    = -1;
   Float_t  maxcharge5 =  0.0;
 
-  //if (tchi2s[bestiter]>25.) sigma2*=tchi2s[bestiter]/25.;
-  //if (tchi2s[bestiter]>25.) sigma2=1000.;  // dont'accept
-
   Double_t exB         = AliTRDcalibDB::Instance()->GetOmegaTau(AliTRDcalibDB::Instance()->GetVdrift(0,0,0)
                                                                ,-AliTracker::GetBz()*0.1);
   Double_t expectederr = sigma2*sigma2 + 0.01*0.01;
@@ -3791,8 +3548,6 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
     expectederr += changes[bestiter] * 0.01; 
   }
   expectederr += (0.03 * (tany-exB)*(tany-exB)) * 15.0;
-  //if (tchi2s[bestiter]>18.) expectederr*= tchi2s[bestiter]/18.;
-  //expectederr+=10000;
 
   for (Int_t it = 0; it < t1 - t0; it++) {
 
@@ -3800,10 +3555,10 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
       continue;
     }
 
-    cl[best[bestiter][it]][it]->SetSigmaY2(expectederr); // Set cluster error
+    // Set cluster error
+    cl[best[bestiter][it]][it]->SetSigmaY2(expectederr); 
     if (!cl[best[bestiter][it]][it]->IsUsed()) {
       cl[best[bestiter][it]][it]->SetY(cl[best[bestiter][it]][it]->GetY()); 
-      //cl[best[bestiter][it]][it]->Use();
     }
 
     // Time bins with maximal charge
@@ -3848,16 +3603,9 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
 
     clusters[it+t0] = indexes[best[bestiter][it]][it];    
 
-    // Still needed ????
-    //if (cl[best[bestiter][it]][it]->GetLocalTimeBin()>4 && 
-    //cl[best[bestiter][it]][it]->GetLocalTimeBin()<18) clusters[it+t0]
-    // = indexes[best[bestiter][it]][it];    //Test
-
   } 
 
-  //
   // Set tracklet parameters
-  //
   Double_t trackleterr2 = smoffset[bestiter] + 0.01*0.01;
   if (mpads > 3.5) {
     trackleterr2 += (mpads - 3.5) * 0.04;
@@ -3866,7 +3614,6 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
   trackleterr2 *= TMath::Max(14.0 - nfound,1.0);
   trackleterr2 += 0.2 * (tany-exB)*(tany-exB); 
 
-  // Set tracklet parameters
   tracklet.Set(xmean
               ,track2.GetY() + moffset[bestiter]
               ,meanz[bestiter]
@@ -3877,11 +3624,11 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
   tracklet.SetP1(angle[bestiter]);
   tracklet.SetN(nfound);
   tracklet.SetNCross(changes[bestiter]);
-  tracklet.SetPlane(plane);
+  tracklet.SetPlane(layer);
   tracklet.SetSigma2(expectederr);
   tracklet.SetChi2(tchi2s[bestiter]);
   tracklet.SetMaxPos(maxpos,maxpos4,maxpos5);
-  track->SetTracklets(plane,tracklet);
+  track->SetTracklets(layer,tracklet);
   track->SetNWrong(track->GetNWrong() + nbad[0]);
 
   //
@@ -3912,12 +3659,13 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
       new(array1[it]) AliTRDcluster(dummy);
     }
   }
+
   TGraph graph0(t1-t0,x,dy0);
   TGraph graph1(t1-t0,x,dyb);
   TGraph graphy(t1-t0,x,yt);
   TGraph graphz(t1-t0,x,zt);
 
-  if (AliTRDReconstructor::StreamLevel() > 0) {
+  if (fReconstructor->GetStreamLevel(AliTRDReconstructor::kTracker) > 0) {
     cstream << "tracklet"
            << "track.="      << track              // Track parameters
            << "tany="        << tany               // Tangent of the local track angle 
@@ -3927,7 +3675,7 @@ Int_t AliTRDtracker::FindClusters(Int_t sector, Int_t t0, Int_t t1
            << "nfound="      << nfound             // Number of found clusters
            << "clfound="     << clfound            // Total number of found clusters in road 
            << "mpads="       << mpads              // Mean number of pads per cluster
-           << "plane="       << plane              // Plane number 
+           << "layer="       << layer              // Layer number 
            << "detector="    << detector           // Detector number
            << "road="        << road               // The width of the used road
            << "graph0.="     << &graph0            // x - y = dy for closest cluster
@@ -4037,9 +3785,24 @@ Int_t AliTRDtracker::Freq(Int_t n, const Int_t *inlist
 AliTRDtrack *AliTRDtracker::RegisterSeed(AliTRDseed *seeds, Double_t *params)
 {
   //
-  // Register a seed
+  // Build a TRD track out of tracklet candidates
+  //
+  // Parameters :
+  //   seeds  : array of tracklets
+  //   params : track parameters (see MakeSeeds() function body for a detailed description)
+  //
+  // Output :
+  //   The TRD track.
+  //
+  // Detailed description
+  //
+  // To be discussed with Marian !!
   //
 
+       AliTRDcalibDB *cal = AliTRDcalibDB::Instance();
+       Int_t nTimeBins = cal->GetNumberOfTimeBins();
+       
+
   Double_t alpha = AliTRDgeometry::GetAlpha();
   Double_t shift = AliTRDgeometry::GetAlpha()/2.0;
   Double_t c[15];
@@ -4054,13 +3817,15 @@ AliTRDtrack *AliTRDtracker::RegisterSeed(AliTRDseed *seeds, Double_t *params)
   AliTRDcluster *cl = 0;
 
   for (Int_t ilayer = 0; ilayer < 6; ilayer++) {
-    if (seeds[ilayer].IsOK()) {
-      for (Int_t itime = 22; itime > 0; itime--) {
-       if (seeds[ilayer].GetIndexes(itime) > 0) {
-         index = seeds[ilayer].GetIndexes(itime);
-         cl    = seeds[ilayer].GetClusters(itime);
-         break;
-       }
+               
+               if (seeds[ilayer].IsOK()) {
+      for (Int_t itime = nTimeBins-1; itime > 0; itime--) {
+                               if (seeds[ilayer].GetIndexes(itime) > 0) {
+                               index = seeds[ilayer].GetIndexes(itime);
+                               cl    = seeds[ilayer].GetClusters(itime);
+                                       //printf("l[%d] index[%d] tb[%d] cptr[%p]\n", ilayer, index, itime, cl);
+                                       break;
+                               }
       }
     }
     if (index > 0) {
@@ -4093,72 +3858,98 @@ AliTRDtrack *AliTRDtracker::RegisterSeed(AliTRDseed *seeds, Double_t *params)
   }
 
   return track;
-}
 
-//////////////////////////////////////////////////////////////////////////////////////////
+}
 
-void AliTRDtracker::InitLogHists() {
+//_____________________________________________________________________________
+void AliTRDtracker::InitLogHists() 
+{
+  //
+  // Create the log histograms
+  //
  
-  fHBackfit = new TH1D("logTRD_backfit", "", 40, -0.5, 39.5);  
-  fHRefit = new TH1D("logTRD_refit", "", 40, -0.5, 39.5);
-  fHClSearch = new TH1D("logTRD_clSearch", "", 60, -0.5, 59.5); 
+  fHBackfit  = new TH1D("logTRD_backfit" ,""
+                                         ,  40,-0.5, 39.5);  
+  fHRefit    = new TH1D("logTRD_refit"   ,""
+                                         ,  40,-0.5, 39.5);
+  fHClSearch = new TH1D("logTRD_clSearch",""
+                                         ,  60,-0.5, 59.5); 
   
-  fHX = new TH1D("logTRD_X", ";x (cm)", 200, 50, 400);
-  fHNCl = new TH1D("logTRD_ncl", "", 40, -0.5, 39.5);
-  fHNClTrack = new TH1D("logTRD_nclTrack", "", 180, -0.5, 179.5);
+  fHX        = new TH1D("logTRD_X"       ,";x (cm)"
+                                         , 200,  50,  400);
+  fHNCl      = new TH1D("logTRD_ncl"     ,"" 
+                                         ,  40,-0.5, 39.5);
+  fHNClTrack = new TH1D("logTRD_nclTrack",""
+                                         , 180,-0.5,179.5);
   
-  fHMinYPos = new TH1D("logTRD_minYPos", ";#delta Y (cm)", 400, -6, 6);
-  fHMinYNeg = new TH1D("logTRD_minYNeg", ";#delta Y (cm)", 400, -6, 6);
-  fHMinZ = new TH1D("logTRD_minZ", ";#delta Z (cm)", 400, -20, 20);
-  fHMinD = new TH2D("logTRD_minD", ";#delta Y (cm);#delta Z (cm)", 100, -6, 6, 100, -50, 50);
+  fHMinYPos  = new TH1D("logTRD_minYPos" ,";#delta Y (cm)"
+                                         , 400,  -6,    6);
+  fHMinYNeg  = new TH1D("logTRD_minYNeg" ,";#delta Y (cm)"
+                                         , 400,  -6,    6);
+  fHMinZ     = new TH1D("logTRD_minZ"    ,";#delta Z (cm)"
+                                         , 400, -20,   20);
+  fHMinD     = new TH2D("logTRD_minD"    ,";#delta Y (cm);#delta Z (cm)"
+                                         , 100,  -6,    6
+                                         , 100, -50,   50);
   
-  fHDeltaX = new TH1D("logTRD_deltaX", ";#delta X (cm)", 100, -5, 5);
-  fHXCl = new TH1D("logTRD_xCl", ";cluster x position (cm)", 1000, 280, 380);
+  fHDeltaX   = new TH1D("logTRD_deltaX"  ,";#delta X (cm)"
+                                         , 100,  -5,    5);
+  fHXCl      = new TH1D("logTRD_xCl"     ,";cluster x position (cm)"
+                                         ,1000, 280,  380);
   
-  const char *nameFindCl[4] = {"logTRD_clY", "logTRD_clZ", "logTRD_clB", "logTRD_clG"};
+  const Char_t *nameFindCl[4] = { "logTRD_clY"
+                                , "logTRD_clZ"
+                                , "logTRD_clB"
+                                , "logTRD_clG" };
   
-  for(int i=0; i<4; i++) {
-    fHFindCl[i] = new TH1D(nameFindCl[i], "", 30, -0.5, 29.5);
+  for (Int_t i = 0; i < 4; i++) {
+    fHFindCl[i] = new TH1D(nameFindCl[i],"",30,-0.5,29.5);
   }
-}
 
-//////////////////////////////////////////////////////////////////////////////////////////
+}
 
-void AliTRDtracker::SaveLogHists() {
+//_____________________________________________________________________________
+void AliTRDtracker::SaveLogHists() 
+{
+  //
+  // Save the log histograms in AliESDs.root
+  //
 
-  TDirectory *sav = gDirectory;
-  TFile *logFile = 0;
+  TDirectory *sav     = gDirectory;
+  TFile      *logFile = 0;
 
   TSeqCollection *col = gROOT->GetListOfFiles();
-  int N = col->GetEntries();
-  for(int i=0; i<N; i++) {
-    logFile = (TFile*)col->At(i);
-    if (strstr(logFile->GetName(), "AliESDs.root")) break;
+  Int_t nn = col->GetEntries();
+  for (Int_t i = 0; i < nn; i++) {
+    logFile = (TFile *) col->At(i);
+    if (strstr(logFile->GetName(),"AliESDs.root")) {
+      break;
+    }
   }
    
   logFile->cd();
-  fHBackfit->Write(fHBackfit->GetName(), TObject::kOverwrite);
-  fHRefit->Write(fHRefit->GetName(), TObject::kOverwrite);
-  fHClSearch->Write(fHClSearch->GetName(), TObject::kOverwrite);
-  fHX->Write(fHX->GetName(), TObject::kOverwrite);
-  fHNCl->Write(fHNCl->GetName(), TObject::kOverwrite);
-  fHNClTrack->Write(fHNClTrack->GetName(), TObject::kOverwrite);
-
-  fHMinYPos->Write(fHMinYPos->GetName(), TObject::kOverwrite);
-  fHMinYNeg->Write(fHMinYNeg->GetName(), TObject::kOverwrite);
-  fHMinD->Write(fHMinD->GetName(), TObject::kOverwrite);
-  fHMinZ->Write(fHMinZ->GetName(), TObject::kOverwrite);
-  
-  fHDeltaX->Write(fHDeltaX->GetName(), TObject::kOverwrite);
-  fHXCl->Write(fHXCl->GetName(), TObject::kOverwrite);
 
+  fHBackfit->Write(fHBackfit->GetName(),TObject::kOverwrite);
+  fHRefit->Write(fHRefit->GetName(),TObject::kOverwrite);
+  fHClSearch->Write(fHClSearch->GetName(),TObject::kOverwrite);
+  fHX->Write(fHX->GetName(),TObject::kOverwrite);
+  fHNCl->Write(fHNCl->GetName(),TObject::kOverwrite);
+  fHNClTrack->Write(fHNClTrack->GetName(),TObject::kOverwrite);
+
+  fHMinYPos->Write(fHMinYPos->GetName(),TObject::kOverwrite);
+  fHMinYNeg->Write(fHMinYNeg->GetName(),TObject::kOverwrite);
+  fHMinD->Write(fHMinD->GetName(),TObject::kOverwrite);
+  fHMinZ->Write(fHMinZ->GetName(),TObject::kOverwrite);
+  
+  fHDeltaX->Write(fHDeltaX->GetName(),TObject::kOverwrite);
+  fHXCl->Write(fHXCl->GetName(),TObject::kOverwrite);
 
-  for(int i=0; i<4; i++)
-    fHFindCl[i]->Write(fHFindCl[i]->GetName(), TObject::kOverwrite);
+  for (Int_t i = 0; i < 4; i++) {
+    fHFindCl[i]->Write(fHFindCl[i]->GetName(),TObject::kOverwrite);
+  }
 
   logFile->Flush();
   
   sav->cd();
-}
 
-//////////////////////////////////////////////////////////////////////////////////////////
+}