X-Git-Url: http://git.uio.no/git/?p=u%2Fmrichter%2FAliRoot.git;a=blobdiff_plain;f=ANALYSIS%2FAliAnalysisAlien.h;h=83d7bfcc9b3e31c5353cfcb4e4d92fab0a819d28;hp=f06771d86525b55f048cf4bd0faca5660273f33e;hb=4b8e4fd9c967888b2baac8c5b9cac3901ac01c42;hpb=c57f56b77666b8e8b967005d158bbd310fd93715 diff --git a/ANALYSIS/AliAnalysisAlien.h b/ANALYSIS/AliAnalysisAlien.h index f06771d8652..83d7bfcc9b3 100644 --- a/ANALYSIS/AliAnalysisAlien.h +++ b/ANALYSIS/AliAnalysisAlien.h @@ -18,6 +18,16 @@ #include #endif +#ifndef ROOT_TMath +#include +#endif + +#ifndef ROOT_TMap +#include +#endif + +class AliAnalysisManager; +class AliAnalysisTaskCfg; class TGridJDL; class AliAnalysisAlien : public AliAnalysisGrid { @@ -30,71 +40,176 @@ public: AliAnalysisAlien(const AliAnalysisAlien& other); AliAnalysisAlien& operator=(const AliAnalysisAlien& other); // Setters + virtual void AddAdditionalLibrary(const char *name); + virtual void AddIncludePath(const char *path); virtual void AddRunNumber(Int_t run); + virtual void AddRunNumber(const char *run); + virtual void AddRunList(const char *runList); virtual void AddDataFile(const char *lfn); + virtual void AddExternalPackage(const char *name); virtual void SetExecutable(const char *name="analysis.sh") {fExecutable = name;} + virtual void SetExecutableCommand(const char *command="root -b -q") {fExecutableCommand = command;} virtual void SetArguments(const char *name="") {fArguments = name;} + virtual void SetExecutableArgs(const char *name="") {fExecutableArgs = name;} virtual void SetAnalysisMacro(const char *name="myAnalysis.C") {fAnalysisMacro = name;} virtual void SetAnalysisSource(const char *name="myAnalysisClass.cxx") {fAnalysisSource = name;} + virtual void SetValidationScript(const char *name="validation.sh") {fValidationScript = name;} virtual void SetAdditionalLibs(const char *list) {fAdditionalLibs = list;} + virtual void SetAdditionalRootLibs(const char *list) {fAdditionalRootLibs = list;} virtual void SetPrice(Int_t price=1) {fPrice = price;} + virtual void SetRunRange(Int_t min, Int_t max) {fRunRange[0] = min; fRunRange[1] = max;} + virtual void SetJobTag(const char *tag="") {fJobTag = tag;} + virtual void SetNrunsPerMaster(Int_t nruns=1) {fNrunsPerMaster = nruns;} + virtual void SetMaxMergeFiles(Int_t nfiles) {fMaxMergeFiles = nfiles;} + virtual void SetMaxMergeStages(Int_t nstages) {fMaxMergeStages = nstages;} virtual void SetSplitMode(const char *type="se") {fSplitMode = type;} virtual void SetSplitMaxInputFileNumber(Int_t nfiles=100) {fSplitMaxInputFileNumber = nfiles;} - virtual void SetAPIVersion(const char *version="V2.4") {fAPIVersion = version;} - virtual void SetROOTVersion(const char *version="v5-21-01-alice") {fROOTVersion = version;} - virtual void SetAliROOTVersion(const char *version="v4-14-Rev-02") {fAliROOTVersion=version;} + virtual void SetAPIVersion(const char *version) {fAPIVersion = version;} + virtual void SetROOTVersion(const char *version) {fROOTVersion = version;} + virtual void SetAliROOTVersion(const char *version) {fAliROOTVersion=version;} virtual void SetUser(const char *user) {fUser = user;} virtual void SetTTL(Int_t ttl=30000) {fTTL = ttl;} virtual void SetGridWorkingDir(const char *name="workdir") {fGridWorkingDir = name;} virtual void SetGridDataDir(const char *name) {fGridDataDir = name;} virtual void SetDataPattern(const char *pattern="*AliESDs.root") {fDataPattern = pattern;} + virtual void SetFriendChainName(const char *name="", const char *libnames=""); + virtual void SetDefaultOutputs(Bool_t flag); virtual void SetGridOutputDir(const char *name="output") {fGridOutputDir = name;} - virtual void SetOutputArchive(const char *list="log_archive.zip:stdout,stderr root_archive.zip:*.root") {fOutputArchive = list;} - virtual void SetOutputFiles(const char *list) {fOutputFiles = list;} + virtual void SetOutputArchive(const char *list="log_archive.zip:std*@disk=1 root_archive.zip:*.root@disk=2"); + virtual void SetOutputFiles(const char *list); + virtual void SetOutputToRunNo(Int_t mode=1) {fOutputToRunNo = mode;} virtual void SetInputFormat(const char *format="xml-single") {fInputFormat = format;} virtual void SetMaxInitFailed(Int_t nfail=5) {fMaxInitFailed = nfail;} + virtual void SetTerminateFiles(const char *list) {fTerminateFiles = list;} + virtual void SetMergeExcludes(const char *list) {fMergeExcludes = list;}; + virtual void SetMergeViaJDL(Bool_t on=kTRUE) {fMergeViaJDL = on ? 1 : 0;} + virtual void SetMergeDirName(const char *name) {fMergeDirName = name;} virtual void SetMasterResubmitThreshold(Int_t percentage) {fMasterResubmitThreshold = percentage;} + virtual void SetNtestFiles(Int_t nfiles) {fNtestFiles = nfiles;} + virtual void SetNumberOfReplicas(Int_t ncopies) {fNreplicas = TMath::Min(ncopies,4);} virtual void SetJDLName(const char *name="analysis.jdl") {fJDLName = name;} + virtual void SetPreferedSE(const char *se); + virtual void SetProductionMode(Int_t mode=1) {fProductionMode = mode;} + virtual void SetRegisterExcludes(const char *list) {fRegisterExcludes = list;} + virtual void SetRunPrefix(const char *prefix); + virtual void SetOutputSingleFolder(const char *folder) {fOutputSingle = folder; fSplitMode="file"; fSplitMaxInputFileNumber=1;} + virtual void SetFastReadOption(Bool_t on=kTRUE) {fFastReadOption = on ? 1 : 0;} + virtual void SetOverwriteMode(Bool_t on=kTRUE) {fOverwriteMode = on ? 1 : 0;} + virtual void SetDropToShell(Bool_t drop=true) {fDropToShell = drop;} + virtual void SetTreeName(const char *name) {fTreeName = name;} - TGridJDL *GetGridJDL() {return fGridJDL;} + TGridJDL *GetGridJDL() const {return fGridJDL;} + TGridJDL *GetMergingJDL() const {return fMergingJDL;} + const char *GetGridOutputDir() const {return fGridOutputDir;} //Utilities + void AddModule(AliAnalysisTaskCfg *module); + void AddModules(TObjArray *list); + AliAnalysisManager *CreateAnalysisManager(const char *name, const char *filename=""); + Int_t GetNmodules() const; + AliAnalysisTaskCfg *GetModule(const char *name); + Bool_t LoadModules(); + Bool_t LoadFriendLibs() const; + Bool_t GenerateTest(const char *name, const char *modname=""); + Bool_t GenerateTrain(const char *name); virtual Bool_t CreateDataset(const char *pattern); + Int_t CopyLocalDataset(const char *griddir, const char *pattern, Int_t nfiles, const char *output="data.txt", const char *archivefile="", const char *outputdir="data"); virtual Bool_t CreateJDL(); + virtual void EnablePackage(const char *package); + static Bool_t DirectoryExists(const char *lfn); + static Bool_t FileExists(const char *lfn); + static const char *GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone); + const char *GetListOfFiles(const char *type); + Bool_t CheckMergedFiles(const char *filename, const char *aliendir, Int_t nperchunk, const char *jdl=""); + static AliAnalysisManager *LoadAnalysisManager(const char *fname); + static Bool_t MergeInfo(const char *output, const char *collection); + static Bool_t MergeOutput(const char *output, const char *basedir, Int_t nmaxmerge, Int_t stage=0); virtual Bool_t MergeOutputs(); - virtual void StartAnalysis(Long64_t nentries=123456789, Long64_t firstentry=0); + virtual void Print(Option_t *option="") const; + virtual Bool_t StartAnalysis(Long64_t nentries=123456789, Long64_t firstentry=0); + static Bool_t SetupPar(const char *package); + virtual Bool_t Submit(); + virtual Bool_t SubmitMerging(); + static Int_t SubmitSingleJob(const char *query); virtual void WriteAnalysisFile(); virtual void WriteAnalysisMacro(); + virtual void WriteMergingMacro(); + virtual void WriteMergeExecutable(); virtual void WriteExecutable(); - virtual void WriteValidationScript(); + virtual Bool_t WriteJDL(Bool_t copy); + virtual void WriteProductionFile(const char *filename) const; + virtual void WriteValidationScript(Bool_t merge=kFALSE); +// PROOF mode + virtual void SetProofCluster(const char *cluster) {fProofCluster = cluster;} + virtual void SetProofDataSet(const char *dataset) {fProofDataSet = dataset;} + virtual const char *GetProofDataSet() const {return fProofDataSet.Data();} + virtual void SetProofParameter(const char *pname, const char *value); + const char *GetProofParameter(const char *pname) const; + virtual void SetProofReset(Int_t mode) {fProofReset = mode;} + virtual void SetNproofWorkers(Int_t nworkers) {fNproofWorkers = nworkers;} + virtual void SetNproofWorkersPerSlave(Int_t nworkers) {fNproofWorkersPerSlave = nworkers;} + virtual void SetRootVersionForProof(const char *version); + virtual void SetAliRootMode(const char *mode) {fAliRootMode = mode;} + virtual void SetProofProcessOpt(const char *proofOpt="") {fProofProcessOpt = proofOpt;} + virtual TString GetProofProcessOpt() {return fProofProcessOpt;} + // .txt file containing the list of files to be chained in test mode + virtual void SetFileForTestMode(const char *filename) {fFileForTestMode = filename;} + virtual TChain *GetChainForTestMode(const char *treeName) const; + virtual const TString& GetGridJobIDs() const { return fGridJobIDs; } + virtual const TString& GetGridStages() const { return fGridStages; } protected: void CdWork(); Bool_t CheckInputData(); void CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags); virtual Bool_t Connect(); virtual void SetDefaults(); + Bool_t SubmitNext(); - Bool_t FileExists(const char *lfn) const; Bool_t IsCollection(const char *lfn) const; + virtual Bool_t IsSingleOutput() const; Bool_t IsUsingTags() const {return TObject::TestBit(AliAnalysisGrid::kUseTags);} + Bool_t LoadModule(AliAnalysisTaskCfg *mod); + Bool_t CheckDependencies(); + Bool_t CheckFileCopy(const char *alienpath); private: TGridJDL *fGridJDL; //! JDL maker + TGridJDL *fMergingJDL; //! JDL maker Int_t fPrice; // Grid price for the job; Int_t fTTL; // Time to live. Int_t fSplitMaxInputFileNumber; // Maximum number of files to be processed per subjob Int_t fMaxInitFailed; // Maximum initial consecutive subjobs accepted to fail Int_t fMasterResubmitThreshold; // Failed jobs will be resubmitted until this DONE ratio + Int_t fNtestFiles; // Number of files used in the testing case + Int_t fRunRange[2]; // Run range + Int_t fNrunsPerMaster; // Number of runs per masterjob + Int_t fMaxMergeFiles; // Maximum number of files to be merged in one chunk + Int_t fMaxMergeStages; // Maximum number of merging stages + Int_t fNsubmitted; // Number of jobs submitted + Int_t fProductionMode; // Production mode (0-off, 1-on) + Int_t fOutputToRunNo; // Use run number as output directory + Int_t fMergeViaJDL; // Enable merging via automatic JDL + Int_t fFastReadOption; // Use xrootd tweaks to reduce timeouts in file access + Int_t fOverwriteMode; // Overwrite existing files if any + Int_t fNreplicas; // Number of replicas for the output files + Int_t fNproofWorkers; // Number of workers in proof mode + Int_t fNproofWorkersPerSlave; // Max number of workers per slave in proof mode + Int_t fProofReset; // Proof reset mode: 0=no reset, 1=soft, 2=hard TString fRunNumbers; // List of runs to be processed TString fExecutable; // Executable script for AliEn job + TString fExecutableCommand; // Command(s) to be executed in the executable script TString fArguments; // Arguments for the executable script + TString fExecutableArgs; // arguments added to the executable script after the analysis macro TString fAnalysisMacro; // Root macro steering the analysis TString fAnalysisSource; // User analysis implementation (.cxx) file(s) - TString fAdditionalLibs; // List (separated by blacs) of additional libraries needed for the analysis + TString fValidationScript; // Name of the validation script + TString fAdditionalRootLibs; // List (separated by blacs) of additional libraries needed for/before analysis libs/par file compilation + TString fAdditionalLibs; // List (separated by blacs) of additional libraries needed for the analysis loaded AFTER all par files TString fSplitMode; // Job split mode TString fAPIVersion; // API version TString fROOTVersion; // ROOT version TString fAliROOTVersion; // AliROOT version + TString fExternalPackages; // External packages TString fUser; // AliEn user name TString fGridWorkingDir; // AliEn directory containing the input packages TString fGridDataDir; // AliEn data production directory @@ -105,8 +220,31 @@ private: TString fInputFormat; // Input format (xml-single) TString fDatasetName; // Dataset xml file to be created TString fJDLName; // JDL file to be generated + TString fTerminateFiles; // List of output files produced during Terminate + TString fMergeExcludes; // List of output files excluded from merging + TString fRegisterExcludes; // List of liles not to be registered/merged + TString fIncludePath; // Include path + TString fCloseSE; // Preffered storage element. Taken from alien_CLOSE_SE environment. + TString fFriendChainName; // File name to construct friend chain (for AOD) + TString fJobTag; // Job tag + TString fOutputSingle; // Directory name for the output when split is per file + TString fRunPrefix; // Run prefix to be applied to run numbers + TString fProofCluster; // Proof cluster name + TString fProofDataSet; // Proof dataset to be used + TString fFileForTestMode; // .txt file for the chain to be used in PROOF test mode + TString fAliRootMode; // AliRoot mode among the list supported by the proof cluster + TString fProofProcessOpt; // Option passed to proof process + TString fMergeDirName; // Name of the directory that should be added to the output directory TObjArray *fInputFiles; // List of input files to be processed by the job - - ClassDef(AliAnalysisAlien, 1) // Class providing some AliEn utilities + TObjArray *fPackages; // List of packages to be used + TObjArray *fModules; // List of AliAnalysisTaskCfg modules + TMap fProofParam; // Key-value pairs for proof mode + Bool_t fDropToShell; // If true, execute aliensh on start + TString fGridJobIDs; // List of last committed jobs + TString fGridStages; // List of last committed jobs + TString fFriendLibs; // List of libs (separated by blacs) needed for friends processing + TString fTreeName; // Name of the tree to be analyzed + + ClassDef(AliAnalysisAlien, 25) // Class providing some AliEn utilities }; #endif