- Geometry transformations can be now filled also from

- Geometry transformations can be now filled also from
  Root geometry file or Root geometry manager
- Introduced new file providing volume paths;
  transform.dat file simplified to contain only ids and matrices
- Read/Write/Fill methods adapted to the changed file format
- Added fMisAlignArray data member for storing misAlignment data
  and methods AddMisAlignModule(), AddMisAlignDetElement()
- Reordered includes, forward declarations