Added various files used for analysis of HLT output data.
authorphille <phille@f7af4fe6-9843-0410-8265-dc069ae4e863>
Mon, 15 Oct 2007 20:32:37 +0000 (20:32 +0000)
committerphille <phille@f7af4fe6-9843-0410-8265-dc069ae4e863>
Mon, 15 Oct 2007 20:32:37 +0000 (20:32 +0000)
These files provides code examples for anyone who wants
to analyze HLT output data.

Most of this code will be used online in HLT at some later stage.

64 files changed:
HLT/PHOS/AliHLTPHOSTreeMakerComponent.cxx
HLT/PHOS/ana/baselineAna/Makefile [new file with mode: 0644]
HLT/PHOS/ana/baselineAna/Makefile.arch [new file with mode: 0644]
HLT/PHOS/ana/baselineAna/baselineAna.cxx [new file with mode: 0644]
HLT/PHOS/ana/crazyness/Makefile [new file with mode: 0644]
HLT/PHOS/ana/crazyness/Makefile.arch [new file with mode: 0644]
HLT/PHOS/ana/crazyness/crazyness.C [new file with mode: 0644]
HLT/PHOS/ana/crazyness/crazyness.cxx [new file with mode: 0644]
HLT/PHOS/ana/deadChannelMap/Makefile [new file with mode: 0644]
HLT/PHOS/ana/deadChannelMap/Makefile.arch [new file with mode: 0644]
HLT/PHOS/ana/deadChannelMap/deadChannelMap.C [new file with mode: 0644]
HLT/PHOS/ana/deadChannelMap/deadChannelMap.cxx [new file with mode: 0644]
HLT/PHOS/ana/deadChannelMapAll/Makefile [new file with mode: 0644]
HLT/PHOS/ana/deadChannelMapAll/Makefile.arch [new file with mode: 0644]
HLT/PHOS/ana/deadChannelMapAll/deadChannelMapAll.cxx [new file with mode: 0644]
HLT/PHOS/ana/digitConverter/convertFiles.C [new file with mode: 0644]
HLT/PHOS/ana/digitConverter/digitConverter.C [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTDataTypes.cxx [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTDataTypes.h [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSAltroConfig.cxx [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSAltroConfig.h [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSBase.cxx [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSBase.h [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSBaseline.cxx [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSBaseline.h [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSConfig.cxx [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSConfig.h [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSConstants.h [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSDebugRawDigit.cxx [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSDebugRawDigit.h [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSDigit.cxx [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSDigit.h [new file with mode: 0644]
HLT/PHOS/ana/digits/AliHLTPHOSLinkDef.h [new file with mode: 0644]
HLT/PHOS/ana/digits/README [new file with mode: 0644]
HLT/PHOS/ana/digits/spectrum.C [new file with mode: 0644]
HLT/PHOS/ana/energySpectrum/Makefile [new file with mode: 0644]
HLT/PHOS/ana/energySpectrum/Makefile.arch [new file with mode: 0644]
HLT/PHOS/ana/energySpectrum/energySpectrum.C [new file with mode: 0644]
HLT/PHOS/ana/energySpectrum/energySpectrum.cxx [new file with mode: 0644]
HLT/PHOS/ana/noise/Makefile [new file with mode: 0644]
HLT/PHOS/ana/noise/Makefile.arch [new file with mode: 0644]
HLT/PHOS/ana/noise/deadChannelMap.cxx [new file with mode: 0644]
HLT/PHOS/ana/noise/noise.C [new file with mode: 0644]
HLT/PHOS/ana/rawAna/Makefile [new file with mode: 0644]
HLT/PHOS/ana/rawAna/Makefile.arch [new file with mode: 0644]
HLT/PHOS/ana/rawAna/rawAna.cxx [new file with mode: 0644]
HLT/PHOS/ana/rawDisplay/Makefile [new file with mode: 0644]
HLT/PHOS/ana/rawDisplay/Makefile.arch [new file with mode: 0644]
HLT/PHOS/ana/rawDisplay/rawDisplay.C [new file with mode: 0644]
HLT/PHOS/ana/rawDisplay/rawDisplay.cxx [new file with mode: 0644]
HLT/PHOS/ana/spectrum/spectrum.C [new file with mode: 0644]
HLT/PHOS/class.sh [new file with mode: 0755]
HLT/PHOS/clusterizer/clusterCompare/Makefile [new file with mode: 0644]
HLT/PHOS/clusterizer/clusterCompare/Makefile.arch [new file with mode: 0644]
HLT/PHOS/clusterizer/clusterCompare/clusterCompare.cxx [new file with mode: 0644]
HLT/PHOS/clusterizer/clusterCompare/clusterTest_old.cxx [new file with mode: 0644]
HLT/PHOS/clusterizer/clusterTest/Makefile [new file with mode: 0644]
HLT/PHOS/clusterizer/clusterTest/Makefile.arch [new file with mode: 0644]
HLT/PHOS/clusterizer/clusterTest/clusterTest.cxx [new file with mode: 0644]
HLT/PHOS/clusterizer/clusterTest/clusterTest_old.cxx [new file with mode: 0644]
HLT/PHOS/clusterizer/clusterTest/test.pair [new file with mode: 0644]
HLT/PHOS/tru/AliHLTPHOSTRUMapper.cxx [new file with mode: 0644]
HLT/PHOS/tru/AliHLTPHOSTRUMapper.h [new file with mode: 0644]
HLT/PHOS/tru/alihltphosmipcounter_interface.h [new file with mode: 0644]

index 7be3fea00de438cc9fcfd96d64d617552225bc81..1304788949db6b284c1c3f70b13a8938fdfd364c 100644 (file)
@@ -189,7 +189,7 @@ void
 AliHLTPHOSTreeMakerComponent::Write()
 {
   cout << "Writing file...";
-  char filename [50];
+  char filename [256];
   sprintf(filename, "%s/run%d_digitTree_%d.root", fDirectory, fRunNb,(fEventCount/fWriteInterval - 1));
   TFile *outfile = new TFile(filename,"recreate");
   fDigitTreePtr->Write();
diff --git a/HLT/PHOS/ana/baselineAna/Makefile b/HLT/PHOS/ana/baselineAna/Makefile
new file mode 100644 (file)
index 0000000..f5c3db9
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = baselineAna.$(ObjSuf)
+
+MAINS       = baselineAna.$(SrcSuf)
+
+MAIN        = baselineAna$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread $(HLTLIBS) -lHLTbase -lAliHLTUtil -lAliHLTPHOS $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/ana/baselineAna/Makefile.arch b/HLT/PHOS/ana/baselineAna/Makefile.arch
new file mode 100644 (file)
index 0000000..1be19b8
--- /dev/null
@@ -0,0 +1,570 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALIHLT_BASEDIR)/PHOS -I$(ALIHLT_BASEDIR)/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux 
+HLTLIBS       = -L$(ALIHLT_LIBDIR)
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/ana/baselineAna/baselineAna.cxx b/HLT/PHOS/ana/baselineAna/baselineAna.cxx
new file mode 100644 (file)
index 0000000..e7142dc
--- /dev/null
@@ -0,0 +1,63 @@
+
+#include "TTree.h"
+#include "TChain.h"
+#include "TClonesArray.h"
+#include "AliHLTPHOSBaseline.h"
+#include <iostream>
+#include "TH1F.h"
+#include "TFile.h"
+
+using namespace std;
+
+Int_t baselineAna(const char*);
+
+int main(int argc, const char** argv)
+{
+  baselineAna(argv[1]);
+  return 0;
+}
+
+Int_t baselineAna(const char* runNb)
+{
+  char filepath [50];
+  char outfile [50];
+
+  bool finished = false;
+  
+  TChain *tree= new TChain("baselineTree");
+
+  sprintf(filepath, "/tmp/phoshlt/analysis/data/baselines/run%s/*", runNb);
+  sprintf(outfile, "/home/phoshlt/analysis/output/run%s/baselines.root", runNb);
+  tree->Add(filepath);
+  TClonesArray *baselineArray = new TClonesArray("AliHLTPHOSBaseline" , 100);
+  tree->SetBranchAddress("Baselines", &baselineArray);
+  TH1F *baselineHist = new TH1F("baselineHist", "Baselines", 100, 0, 99);
+  AliHLTPHOSBaseline *baseline = 0;
+
+  cout << endl << "Tree with " << tree->GetEntries() << " events...\n";
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < baselineArray->GetEntriesFast(); j++)
+       {
+         baseline = (AliHLTPHOSBaseline*)baselineArray->At(j);
+         baselineHist->Fill(baseline->GetBaseline());
+       }
+    }
+  
+  
+  cout << "Printing file...";
+
+  
+  TFile *file = new TFile(outfile,"recreate");
+  baselineHist->Write();
+  file->Close();
+  delete file;
+  file = 0;
+  cout << "Done!\n";
+  
+  return 0;
+}
+  
diff --git a/HLT/PHOS/ana/crazyness/Makefile b/HLT/PHOS/ana/crazyness/Makefile
new file mode 100644 (file)
index 0000000..814cf15
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = crazyness.$(ObjSuf)
+
+MAINS       = crazyness.$(SrcSuf)
+
+MAIN        = crazyness$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread $(HLTLIBS) -lHLTbase -lAliHLTUtil -lAliHLTPHOS $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/ana/crazyness/Makefile.arch b/HLT/PHOS/ana/crazyness/Makefile.arch
new file mode 100644 (file)
index 0000000..1be19b8
--- /dev/null
@@ -0,0 +1,570 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALIHLT_BASEDIR)/PHOS -I$(ALIHLT_BASEDIR)/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux 
+HLTLIBS       = -L$(ALIHLT_LIBDIR)
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/ana/crazyness/crazyness.C b/HLT/PHOS/ana/crazyness/crazyness.C
new file mode 100644 (file)
index 0000000..1cb6eaa
--- /dev/null
@@ -0,0 +1,39 @@
+
+Int_t crazyness(const char* runNb)
+{
+  
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSDebugRawDigit.cxx++");
+  TChain *tree= new TChain("digitTree");
+  char filepath [50];
+
+  sprintf(filepath, "/tmp/phoshlt/analysis/data/run%s/*", runNb);
+  tree->Add(filepath);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  //tree->SetBranchAddress("digits", &digArray);
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  TH1I *crazyHist = new TH1I("crazyHist", "Crazyness", 27, -6, 20);
+  TH2I *crazyChannelHist = new TH2I("crazyChannelHist", "Crazy channels", 64, 0, 63, 56, 0, 55);
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  cout << endl << "Tree with " << tree->GetEntries() << " events...\n";
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         crazyHist->Fill(digit->GetCrazyness());
+         if(digit->GetCrazyness() == 0 && digit->GetGain() == 1)
+           {
+             crazyChannelHist->Fill(digit->GetX(), digit->GetZ());
+           }
+       }
+    }
+  //  crazyHist->Write();
+  crazyChannelHist->Draw();
+    
+  return 0;
+}
+  
diff --git a/HLT/PHOS/ana/crazyness/crazyness.cxx b/HLT/PHOS/ana/crazyness/crazyness.cxx
new file mode 100644 (file)
index 0000000..3581d5a
--- /dev/null
@@ -0,0 +1,65 @@
+
+#include "TTree.h"
+#include "TChain.h"
+#include "TClonesArray.h"
+#include "AliHLTPHOSDebugRawDigit.h"
+#include <iostream>
+#include "TH1I.h"
+#include "TH2I.h"
+#include "TFile.h"
+
+using namespace std;
+
+Int_t sanityFix(const char*);
+
+int main(int argc, const char** argv)
+{
+  sanityFix(argv[1]);
+  return 0;
+}
+
+Int_t sanityFix(const char* runNb)
+{
+  char filepath [50];
+  char outfile [50];
+
+  TChain *tree= new TChain("digitTree");
+
+  sprintf(filepath, "/tmp/phoshlt/analysis/data/run%s/*", runNb);
+  sprintf(outfile, "/home/phoshlt/analysis/output/run%s/crazyness.root", runNb);
+  tree->Add(filepath);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  //tree->SetBranchAddress("digits", &digArray);
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  TH1I *crazyHist = new TH1I("crazyHist", "Crazyness", 27, -6, 20);
+  TH2I *crazyChannelHist = new TH2I("crazyChannelHist", "Crazy channels", 64, 0, 63, 56, 0, 55);
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  cout << endl << "Tree with " << tree->GetEntries() << " events...\n";
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         crazyHist->Fill(digit->GetCrazyness());
+         if(digit->GetCrazyness() == 0 && digit->GetGain() == 1)
+           {
+             crazyChannelHist->Fill(digit->GetX(), digit->GetZ());
+           }
+       }
+    }
+  cout << "Printing file...";
+  TFile *file = new TFile(outfile,"recreate");
+  crazyHist->Write();
+  crazyChannelHist->Write();
+  file->Close();
+  delete file;
+  file = 0;
+  cout << "Done!\n";
+  
+  return 0;
+}
+  
diff --git a/HLT/PHOS/ana/deadChannelMap/Makefile b/HLT/PHOS/ana/deadChannelMap/Makefile
new file mode 100644 (file)
index 0000000..d3bb4ca
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = deadChannelMap.$(ObjSuf)
+
+MAINS       = deadChannelMap.$(SrcSuf)
+
+MAIN        = deadChannelMap$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread $(HLTLIBS) -lHLTbase -lAliHLTUtil -lAliHLTPHOS $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/ana/deadChannelMap/Makefile.arch b/HLT/PHOS/ana/deadChannelMap/Makefile.arch
new file mode 100644 (file)
index 0000000..1be19b8
--- /dev/null
@@ -0,0 +1,570 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALIHLT_BASEDIR)/PHOS -I$(ALIHLT_BASEDIR)/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux 
+HLTLIBS       = -L$(ALIHLT_LIBDIR)
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/ana/deadChannelMap/deadChannelMap.C b/HLT/PHOS/ana/deadChannelMap/deadChannelMap.C
new file mode 100644 (file)
index 0000000..26133b3
--- /dev/null
@@ -0,0 +1,57 @@
+
+Int_t deadChannelMap(const char* runNb)
+{
+  char filepath [50];
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSAltroConfig.cxx++");
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSConfig.cxx++");
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSBase.cxx++");
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSDigit.cxx++");
+  TChain *tree= new TChain("digitTree");
+
+  sprintf(filepath, "/tmp/phoshlt/aldaqpc019/hlt/run%s*", runNb);
+  tree->Add(filepath);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDigit" , 100);
+  //tree->SetBranchAddress("digits", &digArray);
+  tree->SetBranchAddress("Digit", &digArray);
+  TH2D *deadMap = new TH2D("deadMap", "Dead Channel Map", 64, 0, 63, 56, 0, 55);
+  AliHLTPHOSDigit *digit = 0;
+
+  cout << endl << "Chain with " << tree->GetEntries() << " events...\n";
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      //  cout << "     Event with " << digArray->GetEntriesFast() << " digits\n";
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDigit*)digArray->At(j);
+          if(digit->GetGain() == 1)
+         {
+         for(int i = 0; i < 70; i++)
+           {
+             if((digit->GetRawData())[i] > 300)
+               {
+                 if((digit->GetRawData())[i+1] > 300)
+                   {
+                     if((digit->GetRawData())[i+2] > 300)
+                       {
+                         if((digit->GetRawData())[i+3] > 300)
+                           {
+                             deadMap->SetBinContent(digit->GetX(), digit->GetZ(), 10);
+                             break;
+                           }
+                       }
+                   }
+               }
+           }
+          }
+       }
+    }
+
+  
+  deadMap->Draw();
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/ana/deadChannelMap/deadChannelMap.cxx b/HLT/PHOS/ana/deadChannelMap/deadChannelMap.cxx
new file mode 100644 (file)
index 0000000..8610379
--- /dev/null
@@ -0,0 +1,81 @@
+
+#include "TTree.h"
+#include "TChain.h"
+#include "TClonesArray.h"
+#include "AliHLTPHOSDebugRawDigit.h"
+#include <iostream>
+#include "TH2D.h"
+#include "TFile.h"
+
+using namespace std;
+
+Int_t deadChannelMap(const char*);
+
+int main(int argc, const char** argv)
+{
+  deadChannelMap(argv[1]);
+  return 0;
+}
+
+Int_t deadChannelMap(const char* runNb)
+{
+  char filepath [50];
+  char outfile [50];
+  
+  TChain *tree= new TChain("digitTree");
+
+  sprintf(filepath, "/tmp/phoshlt/analysis/data/run%s/*", runNb);
+  sprintf(outfile, "/home/phoshlt/analysis/output/run%s/deadMap.root", runNb);
+  tree->Add(filepath);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  //tree->SetBranchAddress("digits", &digArray);
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  TH2D *deadMap = new TH2D("deadMap", "Dead Channel Map", 64, 0, 63, 56, 0, 55);
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  cout << endl << "Chain with " << tree->GetEntries() << " events...\n";
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      //  cout << "     Event with " << digArray->GetEntriesFast() << " digits\n";
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         for(int i = 0; i < 70; i++)
+           {
+             if((digit->GetRawData())[i] > 55)
+               {
+                 if((digit->GetRawData())[i+1] > 55)
+                   {
+                     if((digit->GetRawData())[i+2] > 55)
+                       {
+                         if((digit->GetRawData())[i+3] > 55)
+                           {
+                             deadMap->SetBinContent(digit->GetX(), digit->GetZ(), 10);
+                             break;
+                           }
+                       }
+                   }
+               }
+           }
+       }
+    }
+
+  
+  cout << "Printing file...";
+
+
+  TFile *file = new TFile(outfile,"recreate");
+  deadMap->Write();
+  file->Close();
+  delete file;
+  file = 0;
+  cout << "Done!\n";
+
+
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/ana/deadChannelMapAll/Makefile b/HLT/PHOS/ana/deadChannelMapAll/Makefile
new file mode 100644 (file)
index 0000000..a574b07
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = deadChannelMapAll.$(ObjSuf)
+
+MAINS       = deadChannelMapAll.$(SrcSuf)
+
+MAIN        = deadChannelMapAll$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread $(HLTLIBS) -lHLTbase -lAliHLTUtil -lAliHLTPHOS $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/ana/deadChannelMapAll/Makefile.arch b/HLT/PHOS/ana/deadChannelMapAll/Makefile.arch
new file mode 100644 (file)
index 0000000..1be19b8
--- /dev/null
@@ -0,0 +1,570 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALIHLT_BASEDIR)/PHOS -I$(ALIHLT_BASEDIR)/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux 
+HLTLIBS       = -L$(ALIHLT_LIBDIR)
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/ana/deadChannelMapAll/deadChannelMapAll.cxx b/HLT/PHOS/ana/deadChannelMapAll/deadChannelMapAll.cxx
new file mode 100644 (file)
index 0000000..cc62d67
--- /dev/null
@@ -0,0 +1,183 @@
+
+#include "TTree.h"
+#include "TChain.h"
+#include "TClonesArray.h"
+#include "AliHLTPHOSDebugRawDigit.h"
+#include <iostream>
+#include "TH2D.h"
+#include "TFile.h"
+
+using namespace std;
+
+Int_t deadChannelMapAll();
+
+int main(int argc, const char** argv)
+{
+  deadChannelMapAll();
+  return 0;
+}
+
+Int_t deadChannelMapAll()
+{
+  char filepath [50];
+  char outfile [50];
+  
+  TChain *tree= new TChain("digitTree");
+  TChain *treeOld = new TChain("digitTree");
+  TChain *treeOlder = new TChain("digitTree");
+
+  sprintf(outfile, "/home/phoshlt/analysis/output/all/deadMapAll.root");
+  tree->Add("/tmp/phoshlt/analysis/data/run7798/*");
+  tree->Add("/tmp/phoshlt/analysis/data/run7799/*");
+  tree->Add("/tmp/phoshlt/analysis/data/run7800/*");
+  tree->Add("/tmp/phoshlt/analysis/data/run7801/*");
+  tree->Add("/tmp/phoshlt/analysis/data/run7802/*");
+  tree->Add("/tmp/phoshlt/analysis/data/run7804/*");
+  tree->Add("/tmp/phoshlt/analysis/data/run7805/*");
+  tree->Add("/tmp/phoshlt/analysis/data/run7806/*");
+  
+  // tree->Add("/tmp/phoshlt/analysis/data/run7775/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7776/*");
+  // tree->Add("/tmp/phoshlt/analysis/data/run7777/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7778/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7780/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7781/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7785/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7786/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7789/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7790/*");
+  // tree->Add("/tmp/phoshlt/analysis/data/run7791/*");
+  // tree->Add("/tmp/phoshlt/analysis/data/run7792/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7793/*");
+ //  tree->Add("/tmp/phoshlt/analysis/data/run7794/*");
+  // tree->Add("/tmp/phoshlt/analysis/data/run7795/*");
+  // tree->Add("/tmp/phoshlt/analysis/data/run7796/*");
+  // tree->Add("/tmp/phoshlt/analysis/data/run7797/*");
+  // tree->Add("/home/phoshlt/analysis/data/run7798/*");
+  
+
+  
+  // treeOld->Add("/tmp/phoshlt/analysis/data_old/run7762/*");
+  // treeOld->Add("/tmp/phoshlt/analysis/data_old/run7765/*");
+  // treeOld->Add("/tmp/phoshlt/analysis/data_old/run7767/*");
+  // treeOld->Add("/tmp/phoshlt/analysis/data_old/run7768/*");
+  // treeOld->Add("/tmp/phoshlt/analysis/data_old/run7769/*");
+  // treeOld->Add("/tmp/phoshlt/analysis/data_old/run7771/*");
+  
+  // treeOlder->Add("/tmp/phoshlt/analysis/data_old/run7758/*");
+  // treeOlder->Add("/tmp/phoshlt/analysis/data_old/run7760/*");
+  // treeOlder->Add("/tmp/phoshlt/analysis/data_old/run7761/*");
+  
+
+
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  TClonesArray *digArrayOld = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  TClonesArray *digArrayOlder = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  //tree->SetBranchAddress("digits", &digArray);
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  treeOld->SetBranchAddress("DebugDigitsRaw", &digArrayOld);
+  treeOlder->SetBranchAddress("digits", &digArrayOlder);
+
+  TH2D *deadMapAll = new TH2D("deadMapAll", "Dead Channel Map All runs", 64, 0, 63, 56, 0, 55);
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  cout << endl << "tree is a cain with " << tree->GetEntries() << " events...\n";
+ //  cout << "treeOld is a cain with " << treeOld->GetEntries() << " events...\n";
+ //  cout << "treeOlder is a cain with " << treeOlder->GetEntries() << " events...\n";
+ //  cout << "Gives a total of " << tree->GetEntries() + treeOld->GetEntries() + treeOlder->GetEntries() << "events\n";
+
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      //  cout << "     Event with " << digArray->GetEntriesFast() << " digits\n";
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         for(int i = 0; i < 70; i++)
+           {
+             if((digit->GetRawData())[i] > 60)
+               {
+                 if((digit->GetRawData())[i+1] > 60)
+                   {
+                     if((digit->GetRawData())[i+2] > 60)
+                       {
+                         if((digit->GetRawData())[i+3] > 60)
+                           {
+                             deadMapAll->SetBinContent(digit->GetX(), digit->GetZ(), 10);
+                             break;
+                           }
+                       }
+                   }
+               }
+           }
+       }
+    }
+ for(int k = 0; k < treeOld->GetEntries(); k++)
+    {
+      treeOld->GetEntry(k);
+      //  cout << "     Event with " << digArray->GetEntriesFast() << " digits\n";
+      for(int j = 0; j < digArrayOld->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArrayOld->At(j);
+         for(int i = 0; i < 70; i++)
+           {
+             if((digit->GetRawData())[i] > 30)
+               {
+                 if((digit->GetRawData())[i+1] > 30)
+                   {
+                     if((digit->GetRawData())[i+2] > 30)
+                       {
+                         if((digit->GetRawData())[i+3] > 30)
+                           {
+                             deadMapAll->SetBinContent(digit->GetX(), digit->GetZ(), 10);
+                             break;
+                           }
+                       }
+                   }
+               }
+           }
+       }
+    }
+   for(int k = 0; k < treeOlder->GetEntries(); k++)
+    {
+      treeOlder->GetEntry(k);
+      //  cout << "     Event with " << digArray->GetEntriesFast() << " digits\n";
+      for(int j = 0; j < digArrayOlder->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArrayOlder->At(j);
+         for(int i = 0; i < 70; i++)
+           {
+             if((digit->GetRawData())[i] > 30)
+               {
+                 if((digit->GetRawData())[i+1] > 30)
+                   {
+                     if((digit->GetRawData())[i+2] > 30)
+                       {
+                         if((digit->GetRawData())[i+3] > 30)
+                           {
+                             deadMapAll->SetBinContent(digit->GetX(), digit->GetZ(), 10);
+                             break;
+                           }
+                       }
+                   }
+               }
+           }
+       }
+    }
+
+  cout << "Printing file...";
+
+
+  TFile *file = new TFile(outfile,"recreate");
+  deadMapAll->Write();
+  file->Close();
+  delete file;
+  file = 0;
+  cout << "Done!\n";
+
+
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/ana/digitConverter/convertFiles.C b/HLT/PHOS/ana/digitConverter/convertFiles.C
new file mode 100644 (file)
index 0000000..8d3dd1c
--- /dev/null
@@ -0,0 +1,14 @@
+Int_t convertFiles(Int_t runNb, Int_t nFiles)
+{
+   gROOT->ProcessLine(".L ../digits/AliHLTPHOSAltroConfig.cxx++");
+   gROOT->ProcessLine(".L ../digits/AliHLTPHOSDebugRawDigit.cxx++");
+   gROOT->ProcessLine(".L ../digits/AliHLTPHOSDigit.cxx++");
+   gROOT->ProcessLine(".L digitConverter.C++");
+   for(Int_t i = 0; i < nFiles; i++)
+     {
+       digitConverter(runNb, i);
+     }
+   return 0;
+}
+
diff --git a/HLT/PHOS/ana/digitConverter/digitConverter.C b/HLT/PHOS/ana/digitConverter/digitConverter.C
new file mode 100644 (file)
index 0000000..40f7528
--- /dev/null
@@ -0,0 +1,68 @@
+#include "TChain.h"
+#include "TTree.h"
+#include "TClonesArray.h"
+#include "TFile.h"
+#include "../digits/AliHLTPHOSDebugRawDigit.h"
+#include "../digits/AliHLTPHOSDigit.h"
+#include "../digits/AliHLTPHOSAltroConfig.h"
+#include <iostream>
+
+Int_t digitConverter(Int_t runNb, Int_t segNb)
+{
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSDigit.cxx+");
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSDebugRawDigit.cxx+");
+  char filename [50];
+  sprintf(filename, "/tmp/phoshlt/aldaqpc019/hlt/run%d_digitTree_%d.root", runNb, segNb);
+
+  char filepath [50];
+  bool finished = false;
+  
+  TChain *tree= new TChain("digitTree");
+  TTree *newTree = new TTree("digitTree", "Digits tree" );
+
+  tree->Add(filename);
+  TClonesArray *rawDigArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  TClonesArray *oldDigArray = new TClonesArray("AliHLTPHOSDigit" , 100);
+  TClonesArray *newDigArray = new TClonesArray("AliHLTPHOSDigit" , 100);
+  
+  newTree->Branch("Digit", &newDigArray);
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  AliHLTPHOSDebugRawDigit *digit = 0;
+  AliHLTPHOSDigit *newDigit = 0;
+  cout << endl << "Opening file: " << filename << endl;
+  cout << "Converting tree with " << tree->GetEntries() << " events\n";
+  
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         newDigit = (AliHLTPHOSDigit*)newDigArray->New(j);
+         newDigit->SetX(digit->GetX());
+         newDigit->SetZ(digit->GetZ());
+         newDigit->SetAmplitude(digit->GetAmplitude());
+         newDigit->SetTime(digit->GetTime());
+         newDigit->SetEnergy(digit->GetEnergy());
+         newDigit->SetGain(digit->GetGain());
+         newDigit->SetRawData((Int_t*)(digit->GetRawData()));
+         if(digit->GetCrazyness() == 0)
+           newDigit->SetCrazyness(1);
+         if(digit->GetCrazyness() == 1)
+           newDigit->SetCrazyness(0);
+         newDigit->SetBaseline(digit->GetBaseline());
+       }
+      newTree->Fill();
+      newDigArray->Clear();
+    }
+  cout << "Conversion done, writing file: " << filename << endl;;
+  TFile *outfile = new TFile(filename,"recreate");
+  newTree->Write();
+  delete outfile;
+  outfile = 0;
+  cout << "Done!\n";
+  return 0;
+}
+  
diff --git a/HLT/PHOS/ana/digits/AliHLTDataTypes.cxx b/HLT/PHOS/ana/digits/AliHLTDataTypes.cxx
new file mode 100644 (file)
index 0000000..687a828
--- /dev/null
@@ -0,0 +1,71 @@
+// $Id$
+
+/**************************************************************************
+ * This file is property of and copyright by the ALICE HLT Project        * 
+ * ALICE Experiment at CERN, All rights reserved.                         *
+ *                                                                        *
+ * Primary Authors: Matthias Richter <Matthias.Richter@ift.uib.no>        *
+ *                  Timm Steinbeck <timm@kip.uni-heidelberg.de>           *
+ *                  Jochen Thaeder <thaeder@kip.uni-heidelberg.de>        *
+ *                  for The ALICE HLT Project.                            *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+/** @file   AliHLTDataTypes.cxx
+    @author Matthias Richter, Timm Steinbeck, Jochen Thaeder
+    @date   
+    @brief  Implementation of data types. */
+
+#include "AliHLTDataTypes.h"
+
+// those types can not be implemented in the header files as rootcint
+// can not cope with the type id and origin defines.
+
+/** multiple output data types */
+const AliHLTComponentDataType kAliHLTMultipleDataType = {
+  sizeof(AliHLTComponentDataType),
+  {'M','U','L','T','I','P','L','E'},
+  kAliHLTDataOriginPrivate
+};
+
+/** data to file exchange subscriber */
+const AliHLTComponentDataType kAliHLTDataTypeFXSCalib = {
+  sizeof(AliHLTComponentDataType),
+  kAliHLTFXSCalibDataTypeID,
+  kAliHLTDataOriginOut
+};
+
+/** DDL list data type */
+const AliHLTComponentDataType kAliHLTDataTypeDDL  = {
+  sizeof(AliHLTComponentDataType),
+  kAliHLTDDLDataTypeID,
+  kAliHLTDataOriginOut
+};
+
+/** SOR data type */
+const AliHLTComponentDataType kAliHLTDataTypeSOR  = {
+  sizeof(AliHLTComponentDataType),
+  kAliHLTSORDataTypeID,
+  kAliHLTDataOriginPrivate
+};
+
+/** EOR data type */
+const AliHLTComponentDataType kAliHLTDataTypeEOR  = {
+  sizeof(AliHLTComponentDataType),
+  kAliHLTEORDataTypeID,
+  kAliHLTDataOriginPrivate
+};
+
+/** Event type specification */
+const AliHLTComponentDataType kAliHLTDataTypeEvent  = {
+  sizeof(AliHLTComponentDataType),
+  kAliHLTEventDataTypeID,
+  kAliHLTDataOriginPrivate
+};
diff --git a/HLT/PHOS/ana/digits/AliHLTDataTypes.h b/HLT/PHOS/ana/digits/AliHLTDataTypes.h
new file mode 100644 (file)
index 0000000..776cf03
--- /dev/null
@@ -0,0 +1,408 @@
+// @(#) $Id$
+
+#ifndef ALIHLTDATATYPES_H
+#define ALIHLTDATATYPES_H
+/* This file is property of and copyright by the ALICE HLT Project        * 
+ * ALICE Experiment at CERN, All rights reserved.                         *
+ * See cxx source for full Copyright notice                               */
+
+/** @file   AliHLTDataTypes.h
+    @author Matthias Richter, Timm Steinbeck, Jochen Thaeder
+    @date   
+    @brief  Data type declaration for the HLT module.
+*/
+
+//////////////////////////////////////////////////////////////////////////
+//
+// version no of HLT data types
+//
+//////////////////////////////////////////////////////////////////////////
+
+/* Version   Description
+ *   1       first version until June 07; implicite, not tagged
+ *   2       introduced June 07, enhanced/cleaned/arranged structure
+ */
+#define ALIHLT_DATA_TYPES_VERSION 2
+
+//////////////////////////////////////////////////////////////////////////
+//
+// HLT data origin defines
+//
+//////////////////////////////////////////////////////////////////////////
+
+/** field size of datat type origin */
+const int kAliHLTComponentDataTypefOriginSize=4;
+
+
+/** invalid data origin */
+# define kAliHLTVoidDataOrigin "\0\0\0"
+
+/** special id for any data type origin */
+# define kAliHLTAnyDataOrigin "***"
+
+/** HLT out */
+# define kAliHLTDataOriginOut     {'H','L','T',' '}
+
+/** HLT/PubSub private internal */
+# define kAliHLTDataOriginPrivate {'P','R','I','V'}
+
+/** TPC */
+# define kAliHLTDataOriginTPC     {'T','P','C',' '}
+
+/** PHOS */
+# define kAliHLTDataOriginPHOS    {'P','H','O','S'}
+
+/** MUON */
+# define kAliHLTDataOriginMUON    {'M','U','O','N'}
+
+/** TRD */
+# define kAliHLTDataOriginTRD     {'T','R','D',' '}
+
+/** ITS */
+# define kAliHLTDataOriginITS     {'I','T','S',' '}
+
+//////////////////////////////////////////////////////////////////////////
+//
+// HLT common data type defines
+//
+//////////////////////////////////////////////////////////////////////////
+
+/** field size of data type id */
+const int kAliHLTComponentDataTypefIDsize=8;
+
+
+/** invalid data type id */
+# define kAliHLTVoidDataTypeID "\0\0\0\0\0\0\0"
+
+/** special id for any data type id */
+# define kAliHLTAnyDataTypeID "*******"
+
+/** calibration data for file exchange subscriber */
+# define kAliHLTFXSCalibDataTypeID {'F','X','S','_','C','A','L',' '}
+
+/** start of run (SOR) event 
+ * @ref AliHLTRunDesc
+ */
+# define kAliHLTSORDataTypeID      {'S','T','A','R','T','O','F','R'}
+
+/** end of run (EOR) event 
+ * @ref AliHLTRunDesc
+ */
+# define kAliHLTEORDataTypeID      {'E','N','D','O','F','R','U','N'}
+
+/** DDL list event 
+ * @ref AliHLTEventDDL
+ */
+# define kAliHLTDDLDataTypeID      {'D','D','L','L','I','S','T',' '}
+
+/** EventType event 
+ * - empty payload, specification gives eventType
+ */
+# define kAliHLTEventDataTypeID    {'E','V','E','N','T','T','Y','P'}
+
+using namespace std;
+
+extern "C" {
+  //////////////////////////////////////////////////////////////////////////
+  //
+  // Basic HLT data types
+  //
+  //////////////////////////////////////////////////////////////////////////
+
+  typedef unsigned char AliHLTUInt8_t;
+
+  typedef unsigned short AliHLTUInt16_t;
+
+  typedef unsigned int AliHLTUInt32_t;
+
+  typedef unsigned long long AliHLTUInt64_t;
+
+  typedef AliHLTUInt64_t AliHLTEventID_t;
+
+  //////////////////////////////////////////////////////////////////////////
+  //
+  // HLT logging levels
+  //
+  //////////////////////////////////////////////////////////////////////////
+
+  enum AliHLTComponentLogSeverity { 
+    kHLTLogNone      = 0,
+    kHLTLogBenchmark = 0x1,
+    kHLTLogDebug     = 0x2,
+    kHLTLogInfo      = 0x4,
+    kHLTLogWarning   = 0x8,
+    kHLTLogError     = 0x10,
+    kHLTLogFatal     = 0x20,
+    kHLTLogAll       = 0x3f,
+    kHLTLogDefault   = 0x3d 
+};
+
+  //////////////////////////////////////////////////////////////////////////
+  //
+  // HLT data structures for data exchange and external interface
+  //
+  //////////////////////////////////////////////////////////////////////////
+
+  /**
+   * @struct AliHLTComponentEventData
+   * Event descriptor
+   */
+  struct AliHLTComponentEventData
+  {
+    AliHLTUInt32_t fStructSize;
+    AliHLTEventID_t fEventID;
+    AliHLTUInt32_t fEventCreation_s;
+    AliHLTUInt32_t fEventCreation_us;
+    AliHLTUInt32_t fBlockCnt;
+  };
+
+  /**
+   * @struct AliHLTComponentShmData
+   * Shared memory descriptor.
+   * Irrelevant for analysis components.
+   */
+  struct AliHLTComponentShmData
+  {
+    AliHLTUInt32_t fStructSize;
+    AliHLTUInt32_t fShmType;
+    AliHLTUInt64_t fShmID;
+  };
+
+  /**
+   * @struct AliHLTComponentDataType
+   * Data type descriptor for data blocks transferred through the processing
+   * chain.
+   */
+  struct AliHLTComponentDataType
+  {
+    AliHLTUInt32_t fStructSize;
+    char fID[kAliHLTComponentDataTypefIDsize];                      //!
+    char fOrigin[kAliHLTComponentDataTypefOriginSize];              //!
+  };
+
+  /**
+   * @struct AliHLTComponentBlockData
+   * Descriptor for data blocks.
+   */
+  struct AliHLTComponentBlockData
+  {
+    AliHLTUInt32_t fStructSize;
+    AliHLTComponentShmData fShmKey;
+    AliHLTUInt32_t fOffset;
+    void* fPtr;
+    AliHLTUInt32_t fSize;
+    AliHLTComponentDataType fDataType;
+    AliHLTUInt32_t fSpecification;
+  };
+
+  /**
+   * @struct AliHLTComponentTriggerData
+   * Trigger data, not yet defined
+   */
+  struct AliHLTComponentTriggerData
+  {
+    AliHLTUInt32_t fStructSize;
+    AliHLTUInt32_t fDataSize;
+    void* fData;
+  };
+
+  /**
+   * @struct AliHLTComponentEventDoneData
+   * 
+   */
+  struct AliHLTComponentEventDoneData
+  {
+    AliHLTUInt32_t fStructSize;
+    AliHLTUInt32_t fDataSize;
+    void* fData;
+  };
+
+  /**
+   * @struct AliHLTRunDesc
+   * Event descriptor.
+   * The struct is send with the SOR and EOR events.
+   */
+  struct AliHLTRunDesc
+  {
+    AliHLTUInt32_t fStructSize;
+    AliHLTUInt32_t fRunNo;
+    AliHLTUInt32_t fRunType;
+  };
+
+  /** size of the DDL list */
+  static const int gkAliHLTDDLListSize = 29;
+
+  /**
+   * @struct AliHLTEventDDL
+   * DDL list event.
+   * The struct is send with the DDLLIST event.
+   */
+  struct AliHLTEventDDL
+  {
+    AliHLTUInt32_t fCount;
+    AliHLTUInt32_t fList[gkAliHLTDDLListSize];
+  };
+
+  //////////////////////////////////////////////////////////////////////////
+  //
+  // HLT Event Type Specification
+  //
+  //////////////////////////////////////////////////////////////////////////
+
+  /** Unknown eventType specification */
+  static const AliHLTUInt32_t gkAliEventTypeUnknown = ~(AliHLTUInt32_t)0;
+  /** SOR eventType specification */ 
+  static const AliHLTUInt32_t gkAliEventTypeStartOfRun=1;
+  /** Data eventType specification */
+  static const AliHLTUInt32_t gkAliEventTypeData=2;
+  /** EOR eventType specification */ 
+  static const AliHLTUInt32_t gkAliEventTypeEndOfRun=4;
+  /** Corrupt eventType specification */
+  static const AliHLTUInt32_t gkAliEventTypeCorruptID=8;
+  /** Calibration eventType specification */ 
+  static const AliHLTUInt32_t gkAliEventTypeCalibration=16;
+  /** DataReplay eventType specification */
+  static const AliHLTUInt32_t gkAliEventTypeDataReplay=32;
+  /** Tick eventType specification */ 
+  static const AliHLTUInt32_t gkAliEventTypeTick=64;
+  /** Max eventType specification */ 
+  static const AliHLTUInt32_t gkAliEventTypeMax=64;
+
+  //////////////////////////////////////////////////////////////////////////
+  //
+  // HLT defines and defaults
+  //
+  //////////////////////////////////////////////////////////////////////////
+
+  /** invalid event id */
+  const AliHLTEventID_t kAliHLTVoidEventID=~(AliHLTEventID_t)0;
+
+  /** invalid data specification */
+  const AliHLTUInt32_t kAliHLTVoidDataSpec = ~(AliHLTUInt32_t)0;
+
+  /** invalid shared memory type */
+  const AliHLTUInt32_t gkAliHLTComponentInvalidShmType = 0;
+
+  /** invalid shared memory id */
+  const AliHLTUInt64_t gkAliHLTComponentInvalidShmID = ~(AliHLTUInt64_t)0;
+
+  /** invalid data type */
+  const AliHLTComponentDataType kAliHLTVoidDataType = {
+    sizeof(AliHLTComponentDataType),
+    kAliHLTVoidDataTypeID,
+    kAliHLTVoidDataOrigin
+  };
+
+  // there is currently a problem with rootcint if the predefined ids
+  // (commented below) are used. rootcint does not find the id if they
+  // are char arrays defined with {} and individual chars. If strings
+  // are used it works fine
+  /** any data type */
+  const AliHLTComponentDataType kAliHLTAnyDataType = {
+    sizeof(AliHLTComponentDataType),
+    kAliHLTAnyDataTypeID,
+    kAliHLTAnyDataOrigin
+  };
+
+  /** multiple output data types */
+  extern const AliHLTComponentDataType kAliHLTMultipleDataType;
+
+  /** data to file exchange subscriber */
+  extern const AliHLTComponentDataType kAliHLTDataTypeFXSCalib;
+
+  /** DDL list data type */
+  extern const AliHLTComponentDataType kAliHLTDataTypeDDL;
+
+  /** SOR data type */
+  extern const AliHLTComponentDataType kAliHLTDataTypeSOR;
+
+  /** EOR data type */
+  extern const AliHLTComponentDataType kAliHLTDataTypeEOR;
+
+  /** Event type specification */
+  extern const AliHLTComponentDataType kAliHLTDataTypeEvent;
+
+  //////////////////////////////////////////////////////////////////////////
+  //
+  // FXS subscriber meta information
+  //
+  //////////////////////////////////////////////////////////////////////////
+
+  static const int gkAliHLTFXSHeaderfOriginSize = 4;
+  static const int gkAliHLTFXSHeaderfFileIDSize = 128;
+  static const int gkAliHLTFXSHeaderfDDLNumberSize = 64;
+
+  /** Header in front of the data payload, in order to sent data to the FXS. */
+  struct AliHLTFXSHeader
+  {
+    AliHLTUInt32_t fHeaderVersion;
+    AliHLTUInt32_t fRunNumber;
+    char fOrigin[gkAliHLTFXSHeaderfOriginSize];
+    char fFileID[gkAliHLTFXSHeaderfFileIDSize];
+    char fDDLNumber[gkAliHLTFXSHeaderfDDLNumberSize];
+  };  
+
+  //////////////////////////////////////////////////////////////////////////
+  //
+  // Component running environment
+  //
+  //////////////////////////////////////////////////////////////////////////
+
+  /** logging function */
+  typedef int (*AliHLTfctLogging)( void* param, 
+                                  AliHLTComponentLogSeverity severity,
+                                  const char* origin,
+                                  const char* keyword,
+                                  const char* message);
+
+  /**
+   * @struct AliHLTComponentEnvironment
+   * Running environment for analysis components.
+   * The struct describes function callbacks for 
+   */
+  struct AliHLTComponentEnvironment
+  {
+    AliHLTUInt32_t fStructSize;
+    void* fParam;
+    void* (*fAllocMemoryFunc)( void* param, unsigned long size );
+#if 0
+    // future addition already foreseen/envisioned
+    // IMPORTANT: don not just remove the defines as this breaks the binary
+    // compatibility
+    int (*fAllocShmMemoryFunc)( void* param, unsigned long size, AliHLTComponentBlockData* blockLocation );
+#endif
+    int (*fGetEventDoneDataFunc)( void* param, AliHLTEventID_t eventID, unsigned long size, AliHLTComponentEventDoneData** edd );
+    AliHLTfctLogging fLoggingFunc;
+  };
+}
+
+//////////////////////////////////////////////////////////////////////////
+//
+// Data type helper functions
+//
+//////////////////////////////////////////////////////////////////////////
+
+inline bool operator==( const AliHLTComponentDataType& dt1, const AliHLTComponentDataType& dt2 )
+    {
+    for ( int i = 0; i < kAliHLTComponentDataTypefIDsize; i++ )
+       if ( dt1.fID[i] != dt2.fID[i] )
+           return false;
+    for ( int i = 0; i < kAliHLTComponentDataTypefOriginSize; i++ )
+       if ( dt1.fOrigin[i] != dt2.fOrigin[i] )
+           return false;
+    return true;
+    }
+
+inline bool operator!=( const AliHLTComponentDataType& dt1, const AliHLTComponentDataType& dt2 )
+    {
+    for ( int i = 0; i < kAliHLTComponentDataTypefIDsize; i++ )
+       if ( dt1.fID[i] != dt2.fID[i] )
+           return true;
+    for ( int i = 0; i < kAliHLTComponentDataTypefOriginSize; i++ )
+       if ( dt1.fOrigin[i] != dt2.fOrigin[i] )
+           return true;
+    return false;
+    }
+
+
+#endif 
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSAltroConfig.cxx b/HLT/PHOS/ana/digits/AliHLTPHOSAltroConfig.cxx
new file mode 100644 (file)
index 0000000..ee4016a
--- /dev/null
@@ -0,0 +1,106 @@
+/**************************************************************************
+ * This file is property of and copyright by the Experimental Nuclear     *
+ * Physics Group, Dep. of Physics                                         *
+ * University of Oslo, Norway, 2007                                       *
+ *                                                                        *
+ * Author: Per Thomas Hille <perthi@fys.uio.no> for the ALICE HLT Project.*
+ * Contributors are mentioned in the code where appropriate.              *
+ * Please report bugs to perthi@fys.uio.no                                *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+#include "AliHLTPHOSAltroConfig.h"
+#include <stdio.h>
+
+
+AliHLTPHOSAltroConfig::AliHLTPHOSAltroConfig() : fNPresamples(55), 
+                                                fNSamples(15), 
+                                                fIsAltroZeroSupressed(false),
+                                                fIsAltroBaselineSubtraction(false)
+{
+  fNTotalSamples =  fNPresamples + fNSamples ; 
+
+  FILE *fp = fopen("hltAltroConfig.txt", "r");
+  if(fp == 0)
+    {
+     // printf("\nAliHLTPHOSConfig::AliHLTPHOSConfig(): WARNING: Could not fine file \"hltConfig.txt\" \n");
+     // printf("Default values will be used\n");
+     // PrintAltroDefaultValues();
+    }
+  else
+    {
+      printf("Reading PHOS HLT configurations from file is no yest implemented\n");
+      printf("You can use Setter functions of  AliHLTPHOSConfig to set the appropriate parameters\n");
+      printf("See  AliHLTPHOSConfig.h for details\n");
+      printf("Using default values for the moment\n");
+      PrintAltroDefaultValues(); 
+    }
+
+}
+
+
+AliHLTPHOSAltroConfig::~AliHLTPHOSAltroConfig()
+{
+
+}
+
+void 
+AliHLTPHOSAltroConfig:: PrintAltroDefaultValues()
+{
+  printf("\n AliHLTPHOSAltroConfig Default  Values\n");
+  printf("Presamples = \n", fNPresamples);
+  printf("NSamples = \n", fNSamples);
+
+  if(fIsAltroZeroSupressed == true)
+    {
+      printf("fIsAltroZeroSupressed = true\n");
+    }
+  else
+    {
+      printf("fIsAltroZeroSupressed = false\n");
+    }
+
+  
+  if(fIsAltroBaselineSubtraction == true)
+    {
+      printf("fIsAltroBaselineSubtraction = true\n");
+    }
+  else
+    {
+      printf("fIsAltroBaselineSubtraction = false\n");
+    }
+  //    `fIsSoftwareBaselinesubtraction 
+}
+
+
+void 
+AliHLTPHOSAltroConfig::SetNPresSamples(int presamples)
+{
+  fNPresamples =  presamples;
+}
+
+void 
+AliHLTPHOSAltroConfig::SetNSamples(int samples)
+{
+  fNSamples = samples;
+}
+
+void 
+AliHLTPHOSAltroConfig::SetAltroZeroSupression(bool isZeroSupressed)
+{
+  fIsAltroZeroSupressed = isZeroSupressed;
+}
+
+void 
+AliHLTPHOSAltroConfig::SetAltroBaselineSubtraction(bool isAltroBaselineSubtraction)
+{
+  fIsAltroBaselineSubtraction = isAltroBaselineSubtraction;
+}
+
+
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSAltroConfig.h b/HLT/PHOS/ana/digits/AliHLTPHOSAltroConfig.h
new file mode 100644 (file)
index 0000000..ceebbe9
--- /dev/null
@@ -0,0 +1,49 @@
+#ifndef ALIHLTPHOSALTROCONFIG_H
+#define ALIHLTPHOSALTROCONFIG_H
+
+/**************************************************************************
+ * This file is property of and copyright by the Experimental Nuclear     *
+ * Physics Group, Dep. of Physics                                         *
+ * University of Oslo, Norway, 2007                                       *
+ *                                                                        *
+ * Author: Per Thomas Hille <perthi@fys.uio.no> for the ALICE HLT Project.*
+ * Contributors are mentioned in the code where appropriate.              *
+ * Please report bugs to perthi@fys.uio.no                                *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+
+
+class  AliHLTPHOSAltroConfig
+{
+public:
+  AliHLTPHOSAltroConfig();
+  virtual ~AliHLTPHOSAltroConfig();
+  void SetNPresSamples(int presamples);
+  void SetNSamples(int samples);
+  void SetAltroZeroSupression(bool isZerosupressed);
+  void SetAltroBaselineSubtraction(bool isAltroBaselineSubtraction);
+  //  void SetSoftwareBaselineSubtraction(bool isSoftwareBaselineSubtraction);
+  inline int  GetNPresSamples(){return  fNPresamples;}; 
+  inline int  GetNSamples(){return  fNSamples;}; 
+  inline bool GetIsAltroZroSupresses(){return   fIsAltroZeroSupressed;}; 
+  inline bool GetIsAltroBaselineSubtraction(){return fIsAltroBaselineSubtraction;};
+  void PrintAltroDefaultValues();
+
+protected:
+  //Altro Config
+  int fNPresamples;
+  int fNSamples;
+  int fNTotalSamples;
+  bool fIsAltroZeroSupressed;
+  bool fIsAltroBaselineSubtraction;
+};
+
+#endif
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSBase.cxx b/HLT/PHOS/ana/digits/AliHLTPHOSBase.cxx
new file mode 100644 (file)
index 0000000..a50d1b4
--- /dev/null
@@ -0,0 +1,36 @@
+/**************************************************************************
+ * This file is property of and copyright by the Experimental Nuclear     *
+ * Physics Group, Dep. of Physics                                         *
+ * University of Oslo, Norway, 2007                                       *
+ *                                                                        *
+ * Author: Per Thomas Hille <perthi@fys.uio.no> for the ALICE HLT Project.*
+ * Contributors are mentioned in the code where appropriate.              *
+ * Please report bugs to perthi@fys.uio.no                                *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+#include "AliHLTPHOSBase.h"
+#include "AliHLTPHOSConfig.h"
+#include "AliHLTPHOSAltroConfig.h"
+
+
+AliHLTPHOSBase::AliHLTPHOSBase(): AliHLTPHOSConfig(),  
+                                 AliHLTPHOSAltroConfig()
+{
+  //  fConfigPtr = new AliHLTPHOSConfig();
+  //  fAltroConfigPtr = new AliHLTPHOSAltroConfig();
+}
+
+
+AliHLTPHOSBase::~AliHLTPHOSBase()
+{
+
+}
+
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSBase.h b/HLT/PHOS/ana/digits/AliHLTPHOSBase.h
new file mode 100644 (file)
index 0000000..f4d2ef3
--- /dev/null
@@ -0,0 +1,97 @@
+#ifndef ALIHLTPHOSBASE_H
+#define ALIHLTPHOSBASE_H
+
+/**************************************************************************
+ * This file is property of and copyright by the Experimental Nuclear     *
+ * Physics Group, Dep. of Physics                                         *
+ * University of Oslo, Norway, 2007                                       *
+ *                                                                        *
+ * Author: Per Thomas Hille <perthi@fys.uio.no> for the ALICE HLT Project.*
+ * Contributors are mentioned in the code where appropriate.              *
+ * Please report bugs to perthi@fys.uio.no                                *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+#include <iostream>
+#include <Rtypes.h>
+#include "TString.h"
+#include "AliHLTDataTypes.h"
+#include "AliHLTPHOSConstants.h"
+#include "AliHLTPHOSConfig.h"
+#include "AliHLTPHOSAltroConfig.h"
+
+using namespace PhosHLTConst;
+using namespace std;
+
+
+class AliHLTPHOSConfig;
+class AliHLTPHOSAltroConfig;
+
+class  AliHLTPHOSBase : public AliHLTPHOSConfig, public AliHLTPHOSAltroConfig
+{
+public:
+  AliHLTPHOSBase();
+  virtual ~AliHLTPHOSBase();
+
+
+  template<typename T> 
+  void  DumpData(T *array, int N, int nPerLine)
+  {
+    cout <<   "DumpData N=  " << N <<endl;
+    for(int i= 0; i< N; i++)
+      {
+       if((i%nPerLine == 0)  &&  (i != 0))
+         {
+           printf("\n");
+         }
+
+       cout << array[i]<< "\t";
+
+      }
+  }
+
+  template<typename T> 
+  void  ResetArray(T *array, int N)
+  {
+    for(int i= 0; i< N; i++)
+      {
+       array[i] = 0;
+      }
+  }
+  template<typename T> 
+  T  MaxValue(T *array, int N)
+  {
+    //   Double_t tmpMax = 0;
+      
+    T tmpMax = 0;
+
+    for(int i = 0; i < N; i++)
+      {
+       if(array[i] > tmpMax)
+         {
+           tmpMax = array[i];
+         }
+      }
+  
+    return tmpMax;
+  }
+
+  
+protected:
+  AliHLTPHOSConfig *fConfigPtr;
+  AliHLTPHOSConfig *fAltroConfigPtr;
+
+private:
+  AliHLTPHOSBase(const AliHLTPHOSBase & );
+  AliHLTPHOSBase & operator = (const AliHLTPHOSBase &);
+};
+
+#endif
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSBaseline.cxx b/HLT/PHOS/ana/digits/AliHLTPHOSBaseline.cxx
new file mode 100644 (file)
index 0000000..54af805
--- /dev/null
@@ -0,0 +1,36 @@
+/**************************************************************************
+ * This file is property of and copyright by the ALICE HLT Project        * 
+ * All rights reserved.                                                   *
+ *                                                                        *
+ * Primary Authors: Oystein Djuvsland                                     *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          * 
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+#include "AliHLTPHOSBaseline.h"
+#include "AliHLTPHOSConstants.h"
+
+ClassImp(AliHLTPHOSBaseline);
+         
+AliHLTPHOSBaseline::AliHLTPHOSBaseline() :
+  TObject(),
+  fBaseline(-1),
+  fX(-1),
+  fZ(-1),
+  fGain(-1),
+  fEntries(0)
+{
+}
+
+AliHLTPHOSBaseline::~AliHLTPHOSBaseline()
+{
+}
+
+
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSBaseline.h b/HLT/PHOS/ana/digits/AliHLTPHOSBaseline.h
new file mode 100644 (file)
index 0000000..964b275
--- /dev/null
@@ -0,0 +1,56 @@
+
+/**************************************************************************
+ * This file is property of and copyright by the ALICE HLT Project        * 
+ * All rights reserved.                                                   *
+ *                                                                        *
+ * Primary Authors: Oystein Djuvsland                                     *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          * 
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+#ifndef ALIHLTPHOSBASELINE_H
+#define ALIHLTPHOSBASELINE_H
+
+#include "TObject.h"
+#include "AliHLTPHOSConstants.h"
+
+using namespace PhosHLTConst;
+
+class AliHLTPHOSBaseline : public TObject
+{
+  
+public: 
+  AliHLTPHOSBaseline();
+  virtual ~AliHLTPHOSBaseline();
+
+  void SetBaseline(Float_t baseline) { fBaseline = baseline; }
+  void SetX(Int_t x) { fX = x; }
+  void SetZ(Int_t z) { fZ = z; }
+  void SetGain(Int_t gain) { fGain = gain; }
+  void SetEntries(Int_t entries) { fEntries = 0; }
+
+  Float_t GetBaseline() { return fBaseline; }  
+  Int_t GetX() { return fX; }
+  Int_t GetZ() { return fZ; }
+  Int_t GetGain() { return fGain; }
+  Int_t GetEntries() { return fEntries; }
+
+private:
+
+  Float_t fBaseline;
+  Int_t fX;
+  Int_t fZ;
+  Int_t fGain;
+  Int_t fEntries;
+  
+  ClassDef(AliHLTPHOSBaseline, 1);
+  
+};
+
+#endif
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSConfig.cxx b/HLT/PHOS/ana/digits/AliHLTPHOSConfig.cxx
new file mode 100644 (file)
index 0000000..06b3cb1
--- /dev/null
@@ -0,0 +1,75 @@
+/**************************************************************************
+ * This file is property of and copyright by the Experimental Nuclear     *
+ * Physics Group, Dep. of Physics                                         *
+ * University of Oslo, Norway, 2007                                       *
+ *                                                                        *
+ * Author: Per Thomas Hille <perthi@fys.uio.no> for the ALICE HLT Project.*
+ * Contributors are mentioned in the code where appropriate.              *
+ * Please report bugs to perthi@fys.uio.no                                *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+#include "AliHLTPHOSConfig.h"
+#include <stdio.h>
+
+
+AliHLTPHOSConfig::AliHLTPHOSConfig() : 
+  fIsSoftwareBaselineSubtraction(true)
+{
+  /*
+  FILE *fp = fopen("hltConfig.txt", "r");
+
+
+  if(fp == 0)
+    {
+      printf("\nAliHLTPHOSConfig::AliHLTPHOSConfig(): WARNING: Could not find file \"hltConfig.txt\" \n");
+      printf("Default values will be used\n");
+      PrintDefaultValues();
+    }
+  else
+    {
+      printf("Reading PHOS HLT configurations from file is no yest implemented\n");
+      printf("You can use Setter functions of  AliHLTPHOSConfig to set the appropriate parameters\n");
+      printf("See  AliHLTPHOSConfig.h for details\n");
+      printf("Using default values for the moment\n");
+      PrintDefaultValues(); 
+    }
+  */
+
+}
+
+
+AliHLTPHOSConfig::~AliHLTPHOSConfig()
+{
+
+}
+
+void 
+AliHLTPHOSConfig:: PrintDefaultValues()
+{
+  printf("\n AliHLTPHOSConfig Default  Values\n");
+
+
+  if(fIsSoftwareBaselineSubtraction == true)
+    {
+      printf("fisSoftwarebaselinesubtraction = true\n");
+    }
+  else
+    {
+      printf("fisSoftwarebaselinesubtraction == false\n");
+    }
+
+}
+
+
+void 
+AliHLTPHOSConfig::SetSoftwareBaselineSubtraction(bool isSoftwareBaselineSubtraction)
+{
+  fIsSoftwareBaselineSubtraction =  isSoftwareBaselineSubtraction;
+}
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSConfig.h b/HLT/PHOS/ana/digits/AliHLTPHOSConfig.h
new file mode 100644 (file)
index 0000000..00f438d
--- /dev/null
@@ -0,0 +1,36 @@
+#ifndef ALIHLTPHOSCONFIG_H
+#define ALIHLTPHOSCONFIG_H
+
+/**************************************************************************
+ * This file is property of and copyright by the Experimental Nuclear     *
+ * Physics Group, Dep. of Physics                                         *
+ * University of Oslo, Norway, 2007                                       *
+ *                                                                        *
+ * Author: Per Thomas Hille <perthi@fys.uio.no> for the ALICE HLT Project.*
+ * Contributors are mentioned in the code where appropriate.              *
+ * Please report bugs to perthi@fys.uio.no                                *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+
+
+class  AliHLTPHOSConfig
+{
+public:
+  AliHLTPHOSConfig();
+  virtual ~AliHLTPHOSConfig();
+  void SetSoftwareBaselineSubtraction(bool isSoftwareBaselineSubtraction);
+  void PrintDefaultValues();
+
+protected:
+  bool fIsSoftwareBaselineSubtraction;
+};
+
+#endif
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSConstants.h b/HLT/PHOS/ana/digits/AliHLTPHOSConstants.h
new file mode 100644 (file)
index 0000000..516e7ad
--- /dev/null
@@ -0,0 +1,83 @@
+/**************************************************************************
+ * This file is property of and copyright by the Experimental Nuclear     *
+ * Physics Group, Dep. of Physics                                         *
+ * University of Oslo, Norway, 2006                                       *
+ *                                                                        * 
+ * Author: Per Thomas Hille perthi@fys.uio.no for the ALICE DCS Project.  *
+ * Contributors are mentioned in the code where appropriate.              *
+ * Please report bugs to perthi@fys.uio.no                                * 
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+#ifndef ALIHLTPHOSCONSTANTS_H
+#define ALIHLTPHOSCONSTANTS_H
+
+namespace PhosHLTConst
+{
+  const int MAX_HOSTS = 20;
+  const int DEFAULT_EVENT_PORT = 42001;
+  const int MAX_BIN_VALUE = 1023;
+  const unsigned int HIGH_GAIN    =   1;
+  const unsigned int LOW_GAIN     =   0;
+
+  const unsigned int ALTRO_MAX_SAMPLES = 1008;                           /**<The maximum number of samples of the ALTRO*/
+  //  const unsigned int ALTRO_MAX_TRALER_SIZE = 7;  
+  //  const unsigned int  DDL_BLOCK_SIZE = 5;
+
+  const unsigned int N_ZROWS_RCU     =   28;                    /**<Number of rows per module*/       
+  const unsigned int N_XCOLUMNS_RCU  =   32; 
+  const unsigned int N_ZROWS_MOD      =  56;                    /**<Number of rows per module*/       
+  const unsigned int N_XCOLUMNS_MOD   =  64;                 /**<Number of columns per module*/ 
+  const unsigned int N_GAINS         =   2;                             /**<Number of gains per ALTRO channel*/
+  const unsigned int N_DATATYPES     =   10;    
+
+  const unsigned int  PF_MAX_PATH_LENGTH = 256;
+
+#ifndef __CINT__
+  const unsigned char PF_VECTOR_DIR[] = "/HLT/PHOS/PFVectors";
+#endif
+
+  const unsigned int PF_DEFAULT_N_SAMPLES = 70;
+  const unsigned int PF_DEFAULT_STARTINDEX = 0;
+
+  const unsigned int DEFAULT_TAU = 2;    /**<Assume that the signal rise time of the altrp pulses is 2 us (nominal value of the electronics)*/
+  const unsigned int  DEFAULT_FS = 10;   /**<Assume that the signal is samples with 10 MHZ samle rate*/
+
+  const unsigned int MODULE_0     = 0;
+  const unsigned int MODULE_1     = 1;
+  const unsigned int MODULE_2     = 2;
+  const unsigned int MODULE_3     = 3;
+  const unsigned int MODULE_4     = 4;
+
+  const unsigned int CSPS_PER_FEE    = 32;
+  const unsigned int RCU_0       = 0;
+  const unsigned int RCU_1       = 1;
+  const unsigned int RCU_2       = 2;
+  const unsigned int RCU_3       = 3;
+
+  const unsigned int Z_0         = 0;
+  const unsigned int Z_1         = 1;
+  const unsigned int X_0         = 0;
+  const unsigned int X_1         = 1;
+
+  const unsigned int N_MODULES    =      5;                             /**<Number of modules of the PHOS detector*/
+  const unsigned int N_RCUS       =      4;                             /**<Number of RCUs per Module*/
+  const unsigned int N_RCUS_PER_MODULE =  4 ;                            /**<Number of RCUs per Module*/
+  const unsigned int N_RCUS_PER_TOTAL =  N_MODULES*N_RCUS_PER_MODULE;   /**<Total number of RCUs for PHOS*/
+  const unsigned int N_FEECS         =  14;                             /**<Number of Frontend cards per branch*/
+  const unsigned int N_ALTROS        =   4;                             /**<Number of ALTROs per frontend card*/
+  const unsigned int N_ALTROCHANNELS =  16;
+  const unsigned int N_BRANCHES      =   2;      
+}
+
+
+#endif
+
+
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSDebugRawDigit.cxx b/HLT/PHOS/ana/digits/AliHLTPHOSDebugRawDigit.cxx
new file mode 100644 (file)
index 0000000..296f78d
--- /dev/null
@@ -0,0 +1,32 @@
+//insert copyright
+
+#include "AliHLTPHOSDebugRawDigit.h"
+
+ClassImp(AliHLTPHOSDebugRawDigit);
+
+AliHLTPHOSDebugRawDigit::AliHLTPHOSDebugRawDigit() :
+  TObject(),
+  fX(-1),
+  fZ(-1),
+  fAmplitude(-1),
+  fTime(-1),
+  fEnergy(-1),
+  fGain(-1)
+  
+    
+{
+}
+
+AliHLTPHOSDebugRawDigit::~AliHLTPHOSDebugRawDigit()
+{
+}
+
+void 
+AliHLTPHOSDebugRawDigit::SetRawData(UInt_t *dataPtr)
+{
+  for(Int_t i = 0; i < 70; i++)
+    {
+      fData[i] = dataPtr[i];
+    }
+}
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSDebugRawDigit.h b/HLT/PHOS/ana/digits/AliHLTPHOSDebugRawDigit.h
new file mode 100644 (file)
index 0000000..dc16aec
--- /dev/null
@@ -0,0 +1,57 @@
+//insert copyright
+
+#ifndef ALIHLTPHOSDEBUGRAWDIGIT_H
+#define ALIHLTPHOSDEBUGRAWDIGIT_H
+
+#include "TObject.h"
+
+class AliHLTPHOSDebugRawDigit : public TObject
+{
+  
+public: 
+  AliHLTPHOSDebugRawDigit();
+  virtual ~AliHLTPHOSDebugRawDigit();
+
+  void SetX(Int_t x) { fX = x; }
+  void SetZ(Int_t z) { fZ = z; }
+  void SetAmplitude(Float_t amp) { fAmplitude = amp; }
+  void SetTime(Float_t time) { fTime = time; }
+  void SetEnergy(Float_t energy) { fEnergy = energy; }
+  void SetGain(Int_t gain) { fGain = gain; }
+
+  void SetRawData(UInt_t*);
+
+  void SetCrazyness(Int_t crazyness) { fCrazyness = crazyness; }
+  void SetBaseline(Int_t baseline) { fBaseline = baseline; }
+  
+  Int_t GetX() { return fX; }
+  Int_t GetZ() { return fZ; }
+  Float_t GetAmplitude() { return fAmplitude; }
+  Float_t GetTime() { return fTime; }
+  Float_t GetEnergy() { return fEnergy; }
+  Int_t GetGain() { return fGain; }
+
+  UInt_t* GetRawData() { return fData; }
+  Int_t GetCrazyness() {return fCrazyness; }
+  Int_t GetBaseline() { return fBaseline; }
+  
+
+private:
+  
+  Int_t fX;
+  Int_t fZ;
+  Float_t fAmplitude;
+  Float_t fTime;
+  Float_t fEnergy;
+  Int_t fGain;
+  
+  UInt_t fData[70];
+  Int_t fCrazyness; 
+  Int_t fBaseline;
+
+  ClassDef(AliHLTPHOSDebugRawDigit, 1);
+  
+};
+
+#endif
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSDigit.cxx b/HLT/PHOS/ana/digits/AliHLTPHOSDigit.cxx
new file mode 100644 (file)
index 0000000..22de1bd
--- /dev/null
@@ -0,0 +1,48 @@
+//insert copyright
+
+#include "AliHLTPHOSDigit.h"
+#include "AliHLTPHOSAltroConfig.h"
+
+ClassImp(AliHLTPHOSDigit);
+
+AliHLTPHOSDigit::AliHLTPHOSDigit() :
+  TObject(),
+  AliHLTPHOSBase(),
+  fX(-1),
+  fZ(-1),
+  fAmplitude(-1),
+  fTime(-1),
+  fEnergy(-1),
+  fGain(-1),
+  fSamples(55),
+  fPreSamples(15),
+  fTotalSamples(70),
+  fDebugVar(-1)
+{
+  //added by PT
+  fSamples = fNSamples;
+  fPreSamples = fNPresamples;
+  fTotalSamples = fNTotalSamples;
+  //   fData = new Int_t[fNTotalSamples];
+  fData = new Int_t[fNTotalSamples];
+
+}
+
+AliHLTPHOSDigit::~AliHLTPHOSDigit()
+{
+}
+
+void 
+AliHLTPHOSDigit::SetRawData(Int_t *dataPtr)
+{
+  //modified by PT
+  //  for(Int_t i = 0; i < 70; i++)
+  //    {
+  //     fData[i] = dataPtr[i];
+  //    }
+  for(Int_t i = 0; i < fNTotalSamples; i++)
+    {
+      fData[i] = dataPtr[i];
+    }
+}
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSDigit.h b/HLT/PHOS/ana/digits/AliHLTPHOSDigit.h
new file mode 100644 (file)
index 0000000..05bf083
--- /dev/null
@@ -0,0 +1,76 @@
+//insert copyright
+
+#ifndef ALIHLTPHOSDIGIT_H
+#define ALIHLTPHOSDIGIT_H
+
+#include "TObject.h"
+//#include "AliHLTPHOSAltroConfig.h"
+#include "AliHLTPHOSBase.h"
+
+//class AliHLTPHOSDigit : public TObject, public AliHLTPHOSAltroConfig
+class AliHLTPHOSDigit : public TObject, public AliHLTPHOSBase
+{
+   
+public: 
+  AliHLTPHOSDigit();
+  virtual ~AliHLTPHOSDigit();
+
+  void SetX(Int_t x) { fX = x; }
+  void SetZ(Int_t z) { fZ = z; }
+  void SetAmplitude(Float_t amp) { fAmplitude = amp; }
+  void SetTime(Float_t time) { fTime = time; }
+  void SetEnergy(Float_t energy) { fEnergy = energy; }
+  void SetGain(Int_t gain) { fGain = gain; }
+
+  void SetRawData(Int_t*);
+
+  void SetCrazyness(Int_t crazyness) { fCrazyness = crazyness; }
+  void SetBaseline(Float_t baseline) { fBaseline = baseline; }
+  
+  void SetSamples(Int_t samples) { fSamples = samples; }
+  void SetPreSamples(Int_t presamples) { fPreSamples = presamples; }
+  void SetDebugVar(Int_t val) { fDebugVar = val; }
+  
+  Int_t GetX() { return fX; }
+  Int_t GetZ() { return fZ; }
+  Float_t GetAmplitude() { return fAmplitude; }
+  Float_t GetTime() { return fTime; }
+  Float_t GetEnergy() { return fEnergy; }
+  Int_t GetGain() { return fGain; }
+
+  Int_t* GetRawData() { return fData; }
+  Int_t GetCrazyness() {return fCrazyness; }
+  Float_t GetBaseline() { return fBaseline; }
+  
+  Int_t GetSamples() { return fSamples; }
+  Int_t GetPreSamples() { return fPreSamples; }
+  
+  Int_t GetDebugVar() { return fDebugVar; }
+  
+
+private:
+  
+  Int_t fX;
+  Int_t fZ;
+  Float_t fAmplitude;
+  Float_t fTime;
+  Float_t fEnergy;
+  Int_t fGain;
+  Int_t fSamples;
+  Int_t fPreSamples;
+  Int_t fTotalSamples;
+  
+  Int_t fDebugVar; //can be anything, not intended for use in analysis
+  
+  Int_t *fData;   //[fTotalSamples]
+
+  Int_t fCrazyness; 
+  Float_t fBaseline;
+
+  ClassDef(AliHLTPHOSDigit, 1);
+  
+};
+
+#endif
diff --git a/HLT/PHOS/ana/digits/AliHLTPHOSLinkDef.h b/HLT/PHOS/ana/digits/AliHLTPHOSLinkDef.h
new file mode 100644 (file)
index 0000000..50c1a5d
--- /dev/null
@@ -0,0 +1,5 @@
+#ifdef __CINT__
+#pragma link C++ class AliHLTPHOSDebugRawDigit;
+#pragma link C++ class AliHLTPHOSBaseline;
+#pragma link C++ class AliHLTPHOSDigit;
+#endif
diff --git a/HLT/PHOS/ana/digits/README b/HLT/PHOS/ana/digits/README
new file mode 100644 (file)
index 0000000..f063785
--- /dev/null
@@ -0,0 +1,7 @@
+To load (and compile) the shared libraries, add this to the macro:
+
+gROOT->ProcessLine(".L <PATH>/AliHLTPHOSDebugRawDigit.cxx++");
+gROOT->ProcessLine(".L <PATH>/AliHLTPHOSBaseline.cxx++");
+
+
+where <PATH> is the location of the files.
\ No newline at end of file
diff --git a/HLT/PHOS/ana/digits/spectrum.C b/HLT/PHOS/ana/digits/spectrum.C
new file mode 100644 (file)
index 0000000..8b534ca
--- /dev/null
@@ -0,0 +1,31 @@
+
+Int_t spectrum(const char* filename)
+{
+  gROOT->ProcessLine(".L AliHLTPHOSDebugRawDigit.cxx++");
+  
+  TH1F *spectrumHist = new TH1F("spectrumHist", "Digit energy spectrum", 200, 0, 200);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  TChain *tree= new TChain("digitTree");
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  tree->Add(filename);
+  
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  cout << endl << "Entries in tree: " << tree->GetEntries() << endl;
+
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         spectrumHist->Fill(digit->GetAmplitude());
+       }
+    }
+  
+  spectrumHist->Draw();
+
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/ana/energySpectrum/Makefile b/HLT/PHOS/ana/energySpectrum/Makefile
new file mode 100644 (file)
index 0000000..da44317
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = energySpectrum.$(ObjSuf)
+
+MAINS       = energySpectrum.$(SrcSuf)
+
+MAIN        = energySpectrum$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread $(HLTLIBS) -lHLTbase -lAliHLTUtil -lAliHLTPHOS $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/ana/energySpectrum/Makefile.arch b/HLT/PHOS/ana/energySpectrum/Makefile.arch
new file mode 100644 (file)
index 0000000..1be19b8
--- /dev/null
@@ -0,0 +1,570 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALIHLT_BASEDIR)/PHOS -I$(ALIHLT_BASEDIR)/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux 
+HLTLIBS       = -L$(ALIHLT_LIBDIR)
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/ana/energySpectrum/energySpectrum.C b/HLT/PHOS/ana/energySpectrum/energySpectrum.C
new file mode 100644 (file)
index 0000000..06226da
--- /dev/null
@@ -0,0 +1,40 @@
+
+Int_t energySpectrum(const char* runNb)
+{
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSAltroConfig.cxx++");
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSDigit.cxx++");
+  TH1F *spectrumHist = new TH1F("spectrumHist", "Digit energy spectrum", 200, 0, 200);
+  TH1F *spectrumHistSingle = new TH1F("spectrumHist", "Digit energy spectrum", 200, 0, 200);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  TChain *tree= new TChain("digitTree");
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  char filepath [50];
+  sprintf(filepath, "/tmp/phoshlt/analysis/data/run%s/*", runNb);
+  tree->Add(filepath);
+  
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  cout << endl << "Entries in tree: " << tree->GetEntries() << endl;
+
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         if(digit->GetAmplitude() > 20&& digit->GetCrazyness()==1 && digit->GetGain() == 1)
+           {
+           spectrumHist->Fill(digit->GetAmplitude());
+         if(digit->fX = 30 &&digit->fZ = 30)
+           {
+             spectrumHistSingle->Fill(digit->GetAmplitude());
+           }
+           }
+       }
+    }
+  spectrumHist->Draw();
+
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/ana/energySpectrum/energySpectrum.cxx b/HLT/PHOS/ana/energySpectrum/energySpectrum.cxx
new file mode 100644 (file)
index 0000000..640a372
--- /dev/null
@@ -0,0 +1,60 @@
+
+#include "TTree.h"
+#include "TChain.h"
+#include "TClonesArray.h"
+#include "TH1F.h"
+#include "TFile.h"
+#include "AliHLTPHOSDebugRawDigit.h"
+#include <iostream>
+
+using namespace std;
+
+Int_t energySpectrum(const char*);
+
+int main(int argc, const char** argv)
+{
+  energySpectrum(argv[1]);
+  return 0;
+}
+
+Int_t energySpectrum(const char* runNb)
+{
+  
+  
+  TH1F *spectrumHist = new TH1F("spectrumHist", "Digit energy spectrum", 200, 0, 200);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  TChain *tree= new TChain("digitTree");
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  char filepath [50];
+  char outfile [50];
+
+  sprintf(filepath, "/tmp/phoshlt/analysis/data/run%s/*", runNb);
+  sprintf(outfile, "/home/phoshlt/analysis/output/run%s/spectrum.root", runNb);
+  tree->Add(filepath);
+  
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  cout << endl << "Entries in tree: " << tree->GetEntries() << endl;
+
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         if((digit->GetAmplitude() - digit->GetBaseline()) > 20 && digit->GetCrazyness())
+           spectrumHist->Fill(digit->GetAmplitude()- digit->GetBaseline());
+       }
+    }
+  cout << "Printing file...";
+  TFile *file = new TFile(outfile,"recreate");
+  spectrumHist->Write();
+  file->Close();
+  delete file;
+  file = 0;
+  cout << "Done!\n";
+
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/ana/noise/Makefile b/HLT/PHOS/ana/noise/Makefile
new file mode 100644 (file)
index 0000000..d3bb4ca
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = deadChannelMap.$(ObjSuf)
+
+MAINS       = deadChannelMap.$(SrcSuf)
+
+MAIN        = deadChannelMap$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread $(HLTLIBS) -lHLTbase -lAliHLTUtil -lAliHLTPHOS $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/ana/noise/Makefile.arch b/HLT/PHOS/ana/noise/Makefile.arch
new file mode 100644 (file)
index 0000000..1be19b8
--- /dev/null
@@ -0,0 +1,570 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALIHLT_BASEDIR)/PHOS -I$(ALIHLT_BASEDIR)/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux 
+HLTLIBS       = -L$(ALIHLT_LIBDIR)
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/ana/noise/deadChannelMap.cxx b/HLT/PHOS/ana/noise/deadChannelMap.cxx
new file mode 100644 (file)
index 0000000..8610379
--- /dev/null
@@ -0,0 +1,81 @@
+
+#include "TTree.h"
+#include "TChain.h"
+#include "TClonesArray.h"
+#include "AliHLTPHOSDebugRawDigit.h"
+#include <iostream>
+#include "TH2D.h"
+#include "TFile.h"
+
+using namespace std;
+
+Int_t deadChannelMap(const char*);
+
+int main(int argc, const char** argv)
+{
+  deadChannelMap(argv[1]);
+  return 0;
+}
+
+Int_t deadChannelMap(const char* runNb)
+{
+  char filepath [50];
+  char outfile [50];
+  
+  TChain *tree= new TChain("digitTree");
+
+  sprintf(filepath, "/tmp/phoshlt/analysis/data/run%s/*", runNb);
+  sprintf(outfile, "/home/phoshlt/analysis/output/run%s/deadMap.root", runNb);
+  tree->Add(filepath);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  //tree->SetBranchAddress("digits", &digArray);
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  TH2D *deadMap = new TH2D("deadMap", "Dead Channel Map", 64, 0, 63, 56, 0, 55);
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  cout << endl << "Chain with " << tree->GetEntries() << " events...\n";
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      //  cout << "     Event with " << digArray->GetEntriesFast() << " digits\n";
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         for(int i = 0; i < 70; i++)
+           {
+             if((digit->GetRawData())[i] > 55)
+               {
+                 if((digit->GetRawData())[i+1] > 55)
+                   {
+                     if((digit->GetRawData())[i+2] > 55)
+                       {
+                         if((digit->GetRawData())[i+3] > 55)
+                           {
+                             deadMap->SetBinContent(digit->GetX(), digit->GetZ(), 10);
+                             break;
+                           }
+                       }
+                   }
+               }
+           }
+       }
+    }
+
+  
+  cout << "Printing file...";
+
+
+  TFile *file = new TFile(outfile,"recreate");
+  deadMap->Write();
+  file->Close();
+  delete file;
+  file = 0;
+  cout << "Done!\n";
+
+
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/ana/noise/noise.C b/HLT/PHOS/ana/noise/noise.C
new file mode 100644 (file)
index 0000000..7b0709d
--- /dev/null
@@ -0,0 +1,47 @@
+
+Int_t noise(int runNbHV, int runNbNoHV)
+{
+  char filepath [50];
+
+  sprintf(filepath, "/opt/HLT-public/rundir/histo_outdata/run%d_RMSHistogram.root", runNbHV);
+  TFile *infile = TFile::Open(filepath);
+  
+  TH2F *RMSHVHist = infile->Get("RMSHGMapHist");
+  //infile->Close();
+  
+  sprintf(filepath, "/opt/HLT-public/rundir/histo_outdata/run%d_RMSHistogram.root", runNbNoHV);
+  TFile *infile2 = TFile::Open(filepath);
+  TH2F *RMSNoHVHist = infile2->Get("RMSHGMapHist");
+  //  infile->Close();
+
+  TH2F *DiffHist = new TH2F("diffHist", "Map", 64, 0 , 63, 56, 0, 55);
+  
+  for(Int_t x = 0; x < 64; x++)
+    {
+      for(Int_t z = 0; z < 56; z++)
+       {
+         if(RMSNoHVHist->GetBinContent(x, z) > 3)
+           {
+             if((RMSNoHVHist->GetBinContent(x, z) - RMSHVHist->GetBinContent(x, z)) < 1 && (RMSNoHVHist->GetBinContent(x, z) - RMSHVHist->GetBinContent(x, z)) > -1)
+               {
+                 DiffHist->SetBinContent(x, z, 10);
+               }
+           }
+       }
+    }
+  
+  TFile *outfile = TFile::Open("hist.root","RECREATE");
+  DiffHist->Write();
+  outfile->Close();
+  //  TCanvas *c1 = new TCanvas("c1");
+  //  RMSHVHist->Draw();
+  //TCanvas *c2 = new TCanvas("c2");
+  // RMSNoHVHist->Draw();
+  // TCanvas *c3 = new TCanvas("c3");
+  DiffHist->Draw();
+
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/ana/rawAna/Makefile b/HLT/PHOS/ana/rawAna/Makefile
new file mode 100644 (file)
index 0000000..a640723
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = rawAna.$(ObjSuf)
+
+MAINS       = rawAna.$(SrcSuf)
+
+MAIN        = rawAna$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread $(HLTLIBS) -lHLTbase -lAliHLTUtil -lAliHLTPHOS $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/ana/rawAna/Makefile.arch b/HLT/PHOS/ana/rawAna/Makefile.arch
new file mode 100644 (file)
index 0000000..1be19b8
--- /dev/null
@@ -0,0 +1,570 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALIHLT_BASEDIR)/PHOS -I$(ALIHLT_BASEDIR)/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux 
+HLTLIBS       = -L$(ALIHLT_LIBDIR)
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/ana/rawAna/rawAna.cxx b/HLT/PHOS/ana/rawAna/rawAna.cxx
new file mode 100644 (file)
index 0000000..454de62
--- /dev/null
@@ -0,0 +1,61 @@
+
+#include "TTree.h"
+#include "TChain.h"
+#include "TClonesArray.h"
+#include "AliHLTPHOSDebugRawDigit.h"
+#include <iostream>
+
+using namespace std;
+
+Int_t anaRaw();
+
+int main()
+{
+  anaRaw();
+  return 0;
+}
+
+Int_t anaRaw()
+{
+  
+  
+  
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  TChain *tree= new TChain("digitTree");
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  tree->Add("/tmp/phoshlt/analysis/data/run7800/*");
+  
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  cout << endl << "Entries in tree: " << tree->GetEntries() << endl;
+
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+            
+         //  if((digit->GetAmplitude() - digit->GetBaseline()) < 50 && (digit->GetAmplitude() - digit->GetBaseline()) > 20)
+         if(digit->GetBaseline() > 70)
+           {
+             cout << "Digit energy: " << digit->GetAmplitude() << endl;
+             cout << "Baseline: " << digit->GetBaseline() << endl;
+             /*
+              if(digit->GetCrazyness())
+               {
+                 cout << "Crazyness: " << digit->GetCrazyness() << endl;
+                 for(int i = 0; i < 70; i++)
+                   { 
+                     cout << (digit->GetRawData())[i] << endl;
+                   }
+               }
+             */
+           }     
+       }
+    }
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/ana/rawDisplay/Makefile b/HLT/PHOS/ana/rawDisplay/Makefile
new file mode 100644 (file)
index 0000000..aa946b1
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = rawDisplay.$(ObjSuf)
+
+MAINS       = rawDisplay.$(SrcSuf)
+
+MAIN        = rawDisplay$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread $(HLTLIBS) -lHLTbase -lAliHLTUtil -lAliHLTPHOS $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/ana/rawDisplay/Makefile.arch b/HLT/PHOS/ana/rawDisplay/Makefile.arch
new file mode 100644 (file)
index 0000000..1be19b8
--- /dev/null
@@ -0,0 +1,570 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALIHLT_BASEDIR)/PHOS -I$(ALIHLT_BASEDIR)/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux 
+HLTLIBS       = -L$(ALIHLT_LIBDIR)
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/ana/rawDisplay/rawDisplay.C b/HLT/PHOS/ana/rawDisplay/rawDisplay.C
new file mode 100644 (file)
index 0000000..cc18fa4
--- /dev/null
@@ -0,0 +1,140 @@
+Int_t rawDisplay(const char* runNb)
+{
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSAltroConfig.cxx++");
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSConfig.cxx++");
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSBase.cxx++");
+  gROOT->ProcessLine(".L ../digits/AliHLTPHOSDigit.cxx++");
+  char filepath [50];
+  char outfile [50];
+  Int_t *dataPtr = 0;
+  fUpperBound = 40;
+  fLowerBound = 20;
+  fStartTime = 10;
+  fZeroThreshold = 5;
+  AliHLTPHOSDigit *digitPtr = 0;
+
+  int flag = 0;
+  int count =0 ;
+  TChain *tree= new TChain("digitTree");
+
+  sprintf(filepath, "/tmp/phoshlt/aldaqpc019/hlt/run%s_digitTree_0.root", runNb);
+  cout << "Opening file: " << filepath << endl;
+  tree->Add(filepath);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDigit" , 100);
+  tree->SetBranchAddress("Digit", &digArray);
+  TH1I *rawHist = new TH1I("rawHist", "Raw display", 70, 0, 69);
+  
+  TH1I *rawHist2 = new TH1I("rawHist2", "Raw display", 70, 0, 69);
+  cout << endl << "Tree with " << tree->GetEntries() << " events...\n";
+  
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDigit*)digArray->At(j);
+         //if(digit->GetAmplitude() - digit->GetBaseline() > 200)
+           //    if(digit->GetBaseline() && digit->GetCrazyness())
+         if(digit->GetCrazyness() == 1 && digit->GetAmplitude() > 200 && digit->GetRawData()[50] < 10 )
+           {
+             count++;
+             UInt_t *data = digit->GetRawData();
+             for(Int_t i = 0; i < 70; i++)
+               {
+                 rawHist->SetBinContent(i, (digit->GetRawData())[i]);
+               }
+             if(count == 2)
+               {
+                 cout << "x: "<< digit->GetX() << " - z: " << digit->GetZ() << endl;
+                 for(int c = 0; c < digArray->GetEntriesFast(); c++)
+                   {
+                     d = (AliHLTPHOSDigit*)digArray->At(c);
+                     if(d->GetX() == digit->GetX() && d->GetZ() == digit->GetZ() && digit->GetGain() != d->GetGain())
+                       {
+                          for(Int_t b = 0; b < 70; b++)
+                            {
+                              rawHist2->SetBinContent(b, (d->GetRawData())[b]);
+                            }
+                       }
+                   }
+                 finished = true;
+                 break;
+               }
+           }
+       }
+      if(finished) break;
+    }
+  /*
+  for(int k = 0; k < tree->GetEntries(); k++)
+    { 
+      if(flag)
+       break;
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         bool IsMIP = true;
+         digitPtr = (AliHLTPHOSDigit*)digArray->At(j);
+         dataPtr = digitPtr->GetRawData();
+         if(digitPtr->GetCrazyness() != 0)
+            {
+              // cout << "Crazy!\n";
+              continue;
+            }
+         if(digitPtr->GetAmplitude() < fLowerBound || digitPtr->GetAmplitude() > fUpperBound)
+            {
+              //  cout << "Wrong amplitude!\n";
+              continue;
+            }
+          
+         for(Int_t time = (Int_t)(digitPtr->GetTime() - 2); time < (digitPtr->GetTime() - 3); time++)
+           {
+             if((Float_t)dataPtr[time] < (digitPtr->GetAmplitude() - (digitPtr->GetAmplitude())/10))
+               {
+                 //  cout << "Not flat enough!\n";
+                 IsMIP = false;
+                 break;
+               }
+           }
+         if(!IsMIP)
+           continue;
+         for(Int_t sample = 0; sample < fStartTime; sample++)
+           {
+             if(dataPtr[sample] > fZeroThreshold || dataPtr[sample] < -fZeroThreshold)
+               {
+                 //  cout << endl << dataPtr[sample] << endl;
+                 //cout << "Not stable baseline!\n";
+                 IsMIP = false;
+                 break;
+               }
+           }
+         if(dataPtr[(Int_t)fStartTime + 5] < fZeroThreshold)
+           {
+             //      cout << "Not stable signal!\n";
+             IsMIP = false;
+           }
+         if(IsMIP)
+           {
+             cout << "Got MIP!\n";
+//           fMIPCountEvent++;
+             // fChannelHistPtr->Fill(digitPtr->fX, digitPtr->fZ);
+          
+             for(int a = 0; a < 70; a++)
+               {
+                 rawHist->SetBinContent(a, (digitPtr->GetRawData())[a]);
+               }
+             flag++;
+             break;
+           }
+       }
+       }*/
+  
+  rawHist->Draw();
+  
+  TCanvas *can = new TCanvas("can");
+  rawHist2->Draw();
+
+  return 0;
+}
+  
diff --git a/HLT/PHOS/ana/rawDisplay/rawDisplay.cxx b/HLT/PHOS/ana/rawDisplay/rawDisplay.cxx
new file mode 100644 (file)
index 0000000..aab8ee3
--- /dev/null
@@ -0,0 +1,95 @@
+
+#include "TTree.h"
+#include "TChain.h"
+#include "TClonesArray.h"
+#include "AliHLTPHOSDebugRawDigit.h"
+#include <iostream>
+#include "TH2D.h"
+#include "TFile.h"
+
+using namespace std;
+
+Int_t rawDisplay(const char*);
+
+int main(int argc, const char** argv)
+{
+  rawDisplay(argv[1]);
+  return 0;
+}
+
+Int_t rawDisplay(const char* runNb)
+{
+  char filepath [50];
+  char outfile [50];
+
+  bool finished = false;
+  
+  TChain *tree= new TChain("digitTree");
+
+  sprintf(filepath, "/tmp/phoshlt/analysis/data/run%s/*", runNb);
+  sprintf(outfile, "/home/phoshlt/analysis/output/run%s/rawHist.root", runNb);
+  tree->Add(filepath);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+   tree->SetBranchAddress("DebugRawDigit", &digArray);
+  TH1I *rawHist = new TH1I("rawHist", "Raw display", 70, 0, 69);
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  cout << endl << "Tree with " << tree->GetEntries() << " events...\n";
+  /*
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         //if(digit->GetAmplitude() - digit->GetBaseline() > 200)
+           //    if(digit->GetBaseline() && digit->GetCrazyness())
+         if(digit->GetAmplitude() < 30 && digit->GetAmplitude() > 25 )
+           {
+             UInt_t *data = digit->GetRawData();
+             for(Int_t i = 0; i < 70; i++)
+               {
+                 rawHist->SetBinContent(i, (digit->GetRawData())[i]);
+               }
+             finished = true;
+             break;
+           }
+       }
+      if(finished) break;
+      
+      }*/
+
+  tree->GetEntry(3);
+  for(int j = 0; j < digArray->GetEntriesFast(); j++)
+    {
+      digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+      if(digit->GetAmplitude() > 60)
+       {
+         cout << digit->GetX() << " - " << digit->GetZ() << " - " << digit->GetAmplitude() << endl;
+       }
+      if(digit->GetX() == 57 && digit->GetZ() == 55 && digit->GetGain() == 0) 
+       {
+         for(int a = 0; a < 70; a++)
+           {
+             cout << (digit->GetRawData())[a] << endl;
+             rawHist->SetBinContent(a, (digit->GetRawData())[a]);
+           }
+       }
+    }
+  
+  
+  cout << "Printing file...";
+
+  
+  TFile *file = new TFile(outfile,"recreate");
+  rawHist->Write();
+  file->Close();
+  delete file;
+  file = 0;
+  cout << "Done!\n";
+  
+  return 0;
+}
+  
diff --git a/HLT/PHOS/ana/spectrum/spectrum.C b/HLT/PHOS/ana/spectrum/spectrum.C
new file mode 100644 (file)
index 0000000..8b338f8
--- /dev/null
@@ -0,0 +1,49 @@
+
+#include "TTree.h"
+#include "TChain.h"
+#include "TClonesArray.h"
+#include "TH1F.h"
+#include "TFile.h"
+#include "AliHLTPHOSDebugRawDigit.h"
+#include <iostream>
+
+using namespace std;
+
+Int_t energySpectrum(const char*);
+
+int main(int argc, const char** argv)
+{
+  energySpectrum(argv[1]);
+  return 0;
+}
+
+Int_t energySpectrum(const char* filename)
+{
+  
+  
+  TH1F *spectrumHist = new TH1F("spectrumHist", "Digit energy spectrum", 200, 0, 200);
+  TClonesArray *digArray = new TClonesArray("AliHLTPHOSDebugRawDigit" , 100);
+  TChain *tree= new TChain("digitTree");
+  AliHLTPHOSDebugRawDigit *digit = 0;
+
+  tree->Add(filename);
+  
+  tree->SetBranchAddress("DebugRawDigit", &digArray);
+  cout << endl << "Entries in tree: " << tree->GetEntries() << endl;
+
+  for(int k = 0; k < tree->GetEntries(); k++)
+    {
+      tree->GetEntry(k);
+      for(int j = 0; j < digArray->GetEntriesFast(); j++)
+       {
+         digit = (AliHLTPHOSDebugRawDigit*)digArray->At(j);
+         spectrumHist->Fill(digit->GetAmplitude());
+       }
+    }
+  
+  spectrumHist->Draw();
+
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/class.sh b/HLT/PHOS/class.sh
new file mode 100755 (executable)
index 0000000..f20d59f
--- /dev/null
@@ -0,0 +1,67 @@
+classfilename=$1
+
+classfilename_h=$classfilename.h
+classfilename_cxx=$classfilename.cxx
+classname=$classfilename
+
+if [  -a $classfilename_h ] || [ -a $classfilename_cxx ];then
+    echo ERROR, $classfilename_h and $classfilename_cxx allready exist, delelte them or rename the class you want to make
+else 
+    echo creating new files   $classfilename_h and $classfilename_cxx
+    printf "#ifndef " > $classfilename_h
+    classguard=${classfilename_h/.h/_H}
+
+    echo $classguard | tr "[:lower:]" "[:upper:]"  >> $classfilename_h
+    printf "#define " >> $classfilename_h
+    echo $classguard | tr "[:lower:]" "[:upper:]"  >> $classfilename_h
+
+    printf "\n" >>$classfilename_h 
+
+    printf "/**************************************************************************\n"  >> $classfilename_h
+    printf " * This file is property of and copyright by the Experimental Nuclear     *\n"  >> $classfilename_h
+    printf " * Physics Group, Dep. of Physics                                         *\n"  >> $classfilename_h
+    printf " * University of Oslo, Norway, 2007                                       *\n"  >> $classfilename_h
+    printf " *                                                                        *\n"  >> $classfilename_h
+    printf " * Author: Per Thomas Hille <perthi@fys.uio.no> for the ALICE HLT Project.*\n"  >> $classfilename_h
+    printf " * Contributors are mentioned in the code where appropriate.              *\n"  >> $classfilename_h
+    printf " * Please report bugs to perthi@fys.uio.no                                *\n"  >> $classfilename_h 
+    printf " *                                                                        *\n"  >> $classfilename_h
+    printf " * Permission to use, copy, modify and distribute this software and its   *\n"  >> $classfilename_h
+    printf " * documentation strictly for non-commercial purposes is hereby granted   *\n"  >> $classfilename_h
+    printf " * without fee, provided that the above copyright notice appears in all   *\n"  >> $classfilename_h
+    printf " * copies and that both the copyright notice and this permission notice   *\n"  >> $classfilename_h
+    printf " * appear in the supporting documentation. The authors make no claims     *\n"  >> $classfilename_h
+    printf " * about the suitability of this software for any purpose. It is          *\n"  >> $classfilename_h
+    printf " * provided \"as is\" without express or implied warranty.                  *\n"  >> $classfilename_h
+    printf " **************************************************************************/\n"  >> $classfilename_h
+
+    printf "\n\n\n" >>$classfilename_h 
+    printf "class " >> $classfilename_h
+    printf " $classname\n{\n\t$classname();\n\tvirtual ~$classname();\n};\n\n#endif\n" >> $classfilename_h  
+
+    printf "/**************************************************************************\n"  >  $classfilename_cxx
+    printf " * This file is property of and copyright by the Experimental Nuclear     *\n"  >> $classfilename_cxx
+    printf " * Physics Group, Dep. of Physics                                         *\n"  >> $classfilename_cxx
+    printf " * University of Oslo, Norway, 2007                                       *\n"  >> $classfilename_cxx
+    printf " *                                                                        *\n"  >> $classfilename_cxx
+    printf " * Author: Per Thomas Hille <perthi@fys.uio.no> for the ALICE HLT Project.*\n"  >> $classfilename_cxx
+    printf " * Contributors are mentioned in the code where appropriate.              *\n"  >> $classfilename_cxx
+    printf " * Please report bugs to perthi@fys.uio.no                                *\n"  >> $classfilename_cxx 
+    printf " *                                                                        *\n"  >> $classfilename_cxx
+    printf " * Permission to use, copy, modify and distribute this software and its   *\n"  >> $classfilename_cxx
+    printf " * documentation strictly for non-commercial purposes is hereby granted   *\n"  >> $classfilename_cxx
+    printf " * without fee, provided that the above copyright notice appears in all   *\n"  >> $classfilename_cxx
+    printf " * copies and that both the copyright notice and this permission notice   *\n"  >> $classfilename_cxx
+    printf " * appear in the supporting documentation. The authors make no claims     *\n"  >> $classfilename_cxx
+    printf " * about the suitability of this software for any purpose. It is          *\n"  >> $classfilename_cxx
+    printf " * provided \"as is\" without express or implied warranty.                  *\n"  >> $classfilename_cxx
+    printf " **************************************************************************/\n"  >> $classfilename_cxx
+    printf "#include \"$classfilename_h\"\n\n" >>  $classfilename_cxx
+    printf "$classname::$classname()\n{\n\n}\n\n" >> $classfilename_cxx
+    printf "$classname::~$classname()\n{\n\n}\n\n" >> $classfilename_cxx
+
+    emacs $classfilename_h  &
+    emacs $classfilename_cxx  &
+
+fi
+
diff --git a/HLT/PHOS/clusterizer/clusterCompare/Makefile b/HLT/PHOS/clusterizer/clusterCompare/Makefile
new file mode 100644 (file)
index 0000000..8c59a68
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = clusterCompare.$(ObjSuf)
+
+MAINS       = clusterCompare.$(SrcSuf)
+
+MAIN        = clusterCompare$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread -L/home/odjuvsla/Workspace/alice/AliRoot/lib/tgt_linux -lRAWDatabase -lRAWDatarec -lRAWDatasim -lPHOSbase -lPHOSrec -lPHOSsim -lSTEER -lSTEERBase -lTPCbase -lAliHLTUtil -lAliHLTPHOS -lHLTbase -lHLTinterface $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+       
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/clusterizer/clusterCompare/Makefile.arch b/HLT/PHOS/clusterizer/clusterCompare/Makefile.arch
new file mode 100644 (file)
index 0000000..1049ca2
--- /dev/null
@@ -0,0 +1,569 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALICE_ROOT)/HLT/PHOS -I$(ALICE_ROOT)/HLT/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux -lESD -lCDB -lAOD
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/clusterizer/clusterCompare/clusterCompare.cxx b/HLT/PHOS/clusterizer/clusterCompare/clusterCompare.cxx
new file mode 100644 (file)
index 0000000..0a90fc7
--- /dev/null
@@ -0,0 +1,107 @@
+
+#include "AliHLTPHOSDigitContainerStruct.h"
+#include "AliHLTPHOSRecPointContainerStruct.h"
+#include "AliHLTPHOSClusterizer.h"
+#include "AliPHOSGetter.h"
+#include "TH1I.h"
+#include "TObjArray.h"
+#include "TFile.h"
+
+#define NLOOPS 1
+
+Int_t clusterCompare();
+
+int main()
+{
+  clusterCompare();
+  return 0;
+}
+
+Int_t clusterCompare()
+{
+  
+  AliHLTPHOSDigitContainerStruct *digCon = new AliHLTPHOSDigitContainerStruct();  
+  AliHLTPHOSRecPointContainerStruct *recCon = new AliHLTPHOSRecPointContainerStruct();
+  AliHLTPHOSClusterizer *clusterizer = new AliHLTPHOSClusterizer();
+  AliPHOSGetter *getter = AliPHOSGetter::Instance("/home/odjuvsla/Workspace/Simulations/singlePhoton/galice.root");
+
+  TObjArray *emcRecPoints = getter->EmcRecPoints();
+
+  TH1I *hist = new TH1I("hist", "Difference in number of clusters found", 10, -5, 5);
+
+  int nClusters = 0;
+  int a = 0;
+
+  clock_t start = 0; 
+  clock_t end = 0;
+  clock_t total = 0;
+  int count = 0;
+
+  clusterizer->SetOfflineMode(getter);
+  clusterizer->SetRecPointContainer(recCon);
+
+  while(a < NLOOPS)
+    {
+      for(int k = 0; k < clusterizer->GetNEvents(); k++)
+       {
+         //  printf("Getting event...");
+         clusterizer->GetEvent(k);
+         //      getter->Event(k, "R");
+         // printf("Done!\n");
+
+         //printf("Starting HLT clusterizing... ");
+         start = clock();
+         clusterizer->SetDigitContainer(digCon);
+         nClusters = clusterizer->ClusterizeEvent();
+         clusterizer->CalculateCenterOfGravity();
+         end = clock();
+         //printf("Done!\n");
+         total += end - start;
+         if(nClusters == 2)
+           {
+             printf("WTF! 2 cluster!  ---  Event: %d\n", k);
+             printf("Positions:\n");
+             printf("x = %f -- z = %f\n", recCon->fRecPointArray[0].fX, recCon->fRecPointArray[0].fZ);
+             printf("x = %f -- z = %f\n", recCon->fRecPointArray[1].fX, recCon->fRecPointArray[1].fZ);
+             printf("Energies:\n");
+             printf("%f\n", recCon->fRecPointArray[0].fAmp);
+             printf("%f\n", recCon->fRecPointArray[1].fAmp);
+             printf("Multiplicities:\n");
+             printf("%d\n",recCon->fRecPointArray[0].fMultiplicity);
+             printf("%d\n",recCon->fRecPointArray[1].fMultiplicity);
+             printf("Digits:\n");
+             for(int c = 0; c < recCon->fRecPointArray[0].fMultiplicity; c++)
+               {
+                 printf("x = %d -- z = %d -- energy = %f\n", recCon->fRecPointArray[0].fDigitsList[c].fX, recCon->fRecPointArray[0].fDigitsList[c].fZ,   recCon->fRecPointArray[0].fDigitsList[c].fEnergy );
+               }
+             printf("\n");
+             for(int b = 0; b < recCon->fRecPointArray[1].fMultiplicity; b++)
+               {
+                 printf("x = %d -- z = %d -- energy = %f\n", recCon->fRecPointArray[1].fDigitsList[b].fX, recCon->fRecPointArray[1].fDigitsList[b].fZ,   recCon->fRecPointArray[1].fDigitsList[b].fEnergy );
+               }
+             printf("\n");
+             
+                    
+           }
+         else
+           printf("Multiplicity: %d\n\n", recCon->fRecPointArray[0].fMultiplicity);
+         count += nClusters;
+         //hist->Fill(emcRecPoints->GetEntriesFast() - recCon->fNRecPoints);
+       }
+      a++;
+    }
+  
+  
+  TFile *outfile = new TFile("histogram.root","recreate");
+  //  hist->Write();
+  outfile->Close();
+
+  printf("Clusterizing done!\n");
+  printf("Total number of clusters: %d\n", count);
+  
+  printf("Time pr event (us): %f\n", (float)total/((float)clusterizer->GetNEvents()*(float)a));
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/clusterizer/clusterCompare/clusterTest_old.cxx b/HLT/PHOS/clusterizer/clusterCompare/clusterTest_old.cxx
new file mode 100644 (file)
index 0000000..8493f8d
--- /dev/null
@@ -0,0 +1,110 @@
+
+#include "AliHLTPHOSDigitContainerStruct.h"
+#include "AliHLTPHOSRecPointContainerStruct.h"
+#include "AliPHOSDigit.h"
+#include "AliPHOSGetter.h"
+#include "AliHLTPHOSClusterizer.h"
+#include "AliPHOSReconstructor.h"
+#include "AliPHOSGeometry.h"
+#include "TH2I.h"
+#include "TFile.h"
+
+Int_t clusterTest();
+
+int main()
+{
+  clusterTest();
+  return 0;
+}
+
+Int_t clusterTest()
+{
+  
+  AliHLTPHOSDigitContainerStruct *digCon = new AliHLTPHOSDigitContainerStruct();
+  
+  AliHLTPHOSRecPointContainerStruct *recCon = new AliHLTPHOSRecPointContainerStruct();
+  AliHLTPHOSClusterizer *clusterizer = new AliHLTPHOSClusterizer();
+
+  AliPHOSDigit * offDig = 0;
+  int nClusters = 0;
+  float energy = 0;
+  float time = 0;
+  Int_t coord[4];
+  int a = 0;
+
+  clock_t start = 0; 
+  clock_t end = 0;
+  clock_t total = 0;
+
+  AliPHOSGeometry *geometry = AliPHOSGeometry::GetInstance();
+
+  TH2F *hist = new TH2F("hist", "hist", 56, 1, 56, 64, 2, 65);
+  TFile *outfile = new TFile("histogram.root","recreate");
+
+  AliPHOSGetter *getter = AliPHOSGetter::Instance("/home/odjuvsla/Workspace/Simulations/test4/galice.root");
+  TClonesArray* digs = getter->Digits(); 
+  
+  clusterizer->SetOfflineMode("/home/odjuvsla/Workspace/Simulations/test4/galice.root");
+  clusterizer->SetRecPointContainer(recCon);
+
+  while(a < 5000)
+    {
+      for(int k = 0; k < getter->MaxEvent(); k++)
+       {
+         
+         //getter->Event(k,"D");
+         //digCon->fNDigits = digs->GetEntries();
+         
+         clusterizer->GetEvent(k);
+         
+         /*  for(int i = 0; i < digs->GetEntries(); i++)
+           {
+             offDig = (AliPHOSDigit*)digs->At(i);
+             digCon->fDigitDataStruct[i].fID = offDig->GetId();
+             digCon->fDigitDataStruct[i].fEnergy = offDig->GetEnergy();
+             digCon->fDigitDataStruct[i].fTime = offDig->GetTime();
+             hist->Fill(coord[3], coord[2], offDig->GetEnergy());
+           }
+           
+         
+         outfile->Open("histogram.root", "recreate");
+         hist->Write();
+         outfile->Close("histogram.root");
+         
+         */
+         
+         start = clock();
+         clusterizer->SetDigitContainer(digCon);
+         nClusters = clusterizer->ClusterizeEvent();
+         clusterizer->CalculateCenterOfGravity();
+         end = clock();
+
+         total += end - start;
+         /*
+           printf("Event #: %d\n", k);
+           printf("Number of clusters found: ", nClusters);
+
+           for(int m = 0; m < nClusters; m++)
+           {
+           energy = 0;
+           for (int n = 0; n < recCon->fRecPointArray[m].fMultiplicity; n++)
+           {
+           energy += recCon->fRecPointArray[m].fDigitsList[n].fEnergy;
+           }
+           printf("Clusters:\n");
+           printf("Cluster energy: %f\n", energy);
+           printf("Cluster position: x = %f -- z = %f\n", recCon->fRecPointArray[m].fX, recCon->fRecPointArray[m].fZ);
+           printf("Digit multiplicity: %d\n", recCon->fRecPointArray[m].fMultiplicity);
+           }
+         */     
+       }
+      a++;
+    }
+  printf("Clusterizing done!\n");
+  
+  printf("Time pr event (us): %f\n", (float)total/((float)getter->MaxEvent()*(float)a));
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/clusterizer/clusterTest/Makefile b/HLT/PHOS/clusterizer/clusterTest/Makefile
new file mode 100644 (file)
index 0000000..50ebec3
--- /dev/null
@@ -0,0 +1,39 @@
+include Makefile.arch
+
+
+MAINO       = clusterTest.$(ObjSuf)
+
+MAINS       = clusterTest.$(SrcSuf)
+
+MAIN        = clusterTest$(ExeSuf)
+
+
+OBJS          = $(MAINO) 
+PROGRAMS      = $(MAIN) 
+
+
+.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)
+
+all:            $(PROGRAMS)
+
+
+$(MAIN):       $(MAINO)
+               $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) $(ALILIBS) -lTreePlayer -lMathCore -lThread -lpthread -L/home/odjuvsla/Workspace/alice/AliRoot/lib/tgt_linux -lRAWDatabase -lRAWDatarec -lRAWDatasim -lPHOSbase -lPHOSrec -lPHOSsim -lSTEER -lSTEERBase -lTPCbase -lAliHLTUtil -lAliHLTPHOS -lHLTbase -lHLTinterface $(OutPutOpt)$(MAIN)
+               @echo "$@ done"
+#              $(LD) $(LDFLAGS) $^ $(LIBS) $(GLIBS) -lTreePlayer -lMathCore -lThread -lpthread $(OutPutOpt)$(MAIN)
+
+
+
+clean:
+               @rm -f $(OBJS) core
+
+distclean:      clean
+               @rm -f $(PROGRAMS) *Dict.* *.def *.exp \
+                  *.root *.ps *.so *.lib *.dll *.d .def so_locations
+               @rm -rf cxx_repository
+
+.SUFFIXES: .$(SrcSuf)
+       
+
+.$(SrcSuf).$(ObjSuf):
+       $(CXX) $(CXXFLAGS) -c $<
diff --git a/HLT/PHOS/clusterizer/clusterTest/Makefile.arch b/HLT/PHOS/clusterizer/clusterTest/Makefile.arch
new file mode 100644 (file)
index 0000000..1049ca2
--- /dev/null
@@ -0,0 +1,569 @@
+# -*- mode: makefile -*-
+#
+# Makefile containing platform dependencies for ROOT based projects.
+#
+# Copyright (c) 2000 Rene Brun and Fons Rademakers
+#
+# Author: Fons Rademakers, 29/2/2000
+
+ROOTCONFIG   := root-config
+
+ARCH         := $(shell $(ROOTCONFIG) --arch)
+PLATFORM     := $(shell $(ROOTCONFIG) --platform)
+
+CXX           =
+ObjSuf        = o
+SrcSuf        = cxx
+ExeSuf        =
+DllSuf        = so
+OutPutOpt     = -o # keep whitespace after "-o"
+
+ROOTCFLAGS   := $(shell $(ROOTCONFIG) --cflags)
+ROOTLDFLAGS  := $(shell $(ROOTCONFIG) --ldflags)
+ROOTLIBS     := $(shell $(ROOTCONFIG) --libs)
+ROOTGLIBS    := $(shell $(ROOTCONFIG) --glibs)
+HASTHREAD    := $(shell $(ROOTCONFIG) --has-thread)
+
+ifeq ($(ARCH),linux)
+# Linux with egcs, gcc 2.9x, gcc 3.x (>= RedHat 5.2)
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+#CXXFLAGS      = -Wall -fPIC -g
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),hpuxacc)
+# HP-UX 10.x with aCC
+CXX           = aCC
+CXXFLAGS      = -O +Z
+LD            = aCC
+LDFLAGS       = -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxia64acc)
+# HP-UX 11i 1.5 (IA-64) with aCC
+CXX           = aCC
+CXXFLAGS      = +DD64 -O +Z
+LD            = aCC
+LDFLAGS       = +DD64 -O -z
+SOFLAGS       = -b
+endif
+
+ifeq ($(ARCH),hpuxgcc)
+# HP-UX 10.x with g++
+CXXFLAGS      = -O -fPIC
+CXX           = g++
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -fPIC -shared
+endif
+
+ifeq ($(ARCH),hurddeb)
+# GNU/Hurd
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),aix)
+# IBM AIX xlC 4.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aix5)
+# IBM AIX xlC 5.x
+CXX           = xlC
+CXXFLAGS      = -O
+LD            = xlC
+LDFLAGS       = -O
+SOFLAGS       =
+DllSuf        = a
+endif
+
+ifeq ($(ARCH),aixgcc)
+# IBM AIX with GCC
+CXX           = g++
+CXXFLAGS      = -O
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+DllSuf        = a
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),solaris)
+# Solaris CC
+CXX           = /opt/SUNWspro/bin/CC
+CXXFLAGS      = -O -KPIC
+LD            = /opt/SUNWspro/bin/CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisCC5)
+# Solaris CC 5.0
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),solarisgcc)
+# Solaris gcc
+CXX           = g++
+CXXFLAGS      = -O -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),solariskcc)
+# Solaris kcc
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O4 -KPIC
+LD            = KCC
+LDFLAGS       = -O4
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),solarisx86)
+# Solaris CC on Intel
+CXX           = CC
+CXXFLAGS      = -O -KPIC
+LD            = CC
+LDFLAGS       = -O
+SOFLAGS       = -G
+endif
+
+ifeq ($(ARCH),sgicc)
+# SGI
+CXX           = CC -n32  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -n32 -LANG:std  -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgicc64)
+# SGI
+CXX           = CC -64  -I/usr/include/CC.sgi
+CXXFLAGS      = -O
+LD            = CC -64 -LANG:std -I/usr/include/CC.sgi
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgigcc)
+# SGI 6.x with gcc
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -Wl,-u,__builtin_new -Wl,-u,__builtin_delete -Wl,-u,__nw__FUiPv
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgin32gcc)
+# SGI 6.x with gcc for n32 ABI
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O -L/usr/lib32 -Wl,-woff,134 -lgen
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),sgikcc)
+# SGI with KCC
+CXX           = KCC -n32 --one_instantiation_per_object
+CXXFLAGS      = -O
+LD            = KCC -n32
+LDFLAGS       = -O
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),alphagcc)
+# Alpha/OSF with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphakcc)
+# Alpha/OSF with kai compiler (not yet valid)
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC
+LD            = KCC
+LDFLAGS       = -O
+SOFLAGS       = -Wl,-expect_unresolved,* -shared
+endif
+
+ifeq ($(ARCH),alphacxx6)
+# Alpha/OSF with cxx6
+CXX           = cxx
+CXXFLAGS      = -O
+LD            = cxx
+LDFLAGS       = -O
+SOFLAGS       = -shared -nocxxstd -Wl,-expect_unresolved,*,-msym
+endif
+
+ifeq ($(ARCH),linuxrh51)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxrh42)
+# Linux with gcc 2.7.2.x (RedHat 4.2)
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O1 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O1
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxdeb2ppc)
+# Debian/Linux on the PowerPC
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxsuse6)
+# Linux with gcc 2.7.2.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxkcc)
+# Linux with the KAI compiler
+CXX           = KCC --one_instantiation_per_object
+CXXFLAGS      = -O -fPIC +K0
+LD            = KCC
+LDFLAGS       = -O $(shell $(ROOTCONFIG) --cflags)
+SOFLAGS       =
+endif
+
+ifeq ($(ARCH),linuxicc)
+# Linux with Intel icc compiler
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxppcgcc)
+# MkLinux with gcc and glibc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64gcc)
+# Itanium Linux with gcc 2.9x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64sgi)
+# Itanium Linux with sgiCC
+CXX           = sgiCC
+CXXFLAGS      = -O -Wall -fPIC
+LD            = gsgiCC
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxia64ecc)
+# Itanium Linux with Intel icc (was ecc)
+ICC_MAJOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f1)
+ICC_MINOR    := $(shell icc -v 2>&1 | awk '{ if (NR==1) print $$2 }' | \
+                cut -d'.' -f2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+ifeq ($(ICC_MAJOR),8)
+ifneq ($(ICC_MINOR),0)
+CXXFLAGS     += -wd1572
+endif
+endif
+endif
+
+ifeq ($(ARCH),linuxx8664gcc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxppc64gcc)
+# PPC64 Linux with gcc 3.x
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxx8664icc)
+# AMD Opteron and Intel EM64T (64 bit mode) Linux with Intel icc compiler
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476 -wd1572
+LD            = icpc
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxalphagcc)
+# Alpha Linux with gcc
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),linuxarm)
+# ARM Linux with egcs
+CXX           = g++
+CXXFLAGS      = -O -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),mklinux)
+# MkLinux with libc5
+CXX           = g++
+CXXFLAGS      = -O2 -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O2
+SOFLAGS       = -shared
+endif
+
+ifeq ($(ARCH),freebsd)
+# FreeBSD with libc5
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd4)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),freebsd5)
+# FreeBSD with glibc
+CXXFLAGS     += -W -Wall -fPIC
+LD            = $(CXX)
+endif
+
+ifeq ($(ARCH),openbsd)
+# OpenBSD with libc
+CXX           = g++
+CXXFLAGS      = -O -pipe -W -Wall -fPIC
+LD            = g++
+LDFLAGS       = -O
+SOFLAGS       = -shared -Wl,-x
+endif
+
+ifeq ($(ARCH),macosx)
+# MacOS X with cc (GNU cc 2.95.2 and gcc 3.3)
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 c++
+else
+UNDEFOPT      = suppress
+LD            = c++
+endif
+endif
+SOFLAGS       = -dynamiclib -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),macosxicc)
+# MacOS X with Intel icc compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = icc
+CXXFLAGS      = -O -fPIC -wd1476
+LDFLAGS       = -O
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 icpc
+endif
+SOFLAGS       = -dynamiclib -single_module -Xlinker -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosx64)
+# MacOS X >= 10.4 with gcc 64 bit mode (GNU gcc 4.*)
+# Only specific option (-m64) comes from root-config
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = c++
+CXXFLAGS      = -O2 -pipe -Wall -W -Woverloaded-virtual
+LDFLAGS       = -O2 -bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 c++
+SOFLAGS       = -dynamiclib -single_module -undefined dynamic_lookup
+endif
+
+ifeq ($(ARCH),macosxxlc)
+# MacOS X with IBM xlC compiler
+MACOSX_MINOR := $(shell sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2)
+CXX           = xlC
+CXXFLAGS      = -O
+LDFLAGS       = -O -Wl,-bind_at_load
+# The SOFLAGS will be used to create the .dylib,
+# the .so will be created separately
+DllSuf        = dylib
+ifeq ($(MACOSX_MINOR),4)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.4 xlC
+else
+ifeq ($(MACOSX_MINOR),3)
+UNDEFOPT      = dynamic_lookup
+LD            = MACOSX_DEPLOYMENT_TARGET=10.3 xlC
+else
+UNDEFOPT      = suppress
+LD            = xlC
+endif
+endif
+SOFLAGS       = -qmkshrobj -single_module -undefined $(UNDEFOPT)
+endif
+
+ifeq ($(ARCH),win32)
+# Windows with the VC++ compiler
+VC_MAJOR     := $(shell unset VS_UNICODE_OUTPUT; cl.exe 2>&1 | awk '{ if (NR==1) print $$8 }' | \
+                cut -d'.' -f1)
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -nologo -I$(shell $(ROOTCONFIG) --incdir) -FIw32pragma.h
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32old)
+# Windows with the VC++ compiler
+ObjSuf        = obj
+SrcSuf        = cxx
+ExeSuf        = .exe
+DllSuf        = dll
+OutPutOpt     = -out:
+CXX           = cl
+CXXOPT        = -O2
+#CXXOPT        = -Z7
+CXXFLAGS      = $(CXXOPT) -G5 -GR -GX -MD -DWIN32 -D_WINDOWS -nologo \
+                -DVISUAL_CPLUSPLUS -D_X86_=1 -D_DLL
+LD            = link
+LDOPT         = -opt:ref
+#LDOPT         = -debug
+LDFLAGS       = $(LDOPT) -pdb:none -nologo
+SOFLAGS       = -DLL
+
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(ARCH),win32gcc)
+# Windows with gcc
+DllSuf        = dll
+ExeSuf        = .exe
+CXX           = g++
+CXXFLAGS      = -O -pipe -Wall -Woverloaded-virtual -I/usr/X11R6/include
+LD            = g++
+LDFLAGS       = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc \
+               -L/usr/X11R6/lib 
+SOFLAGS       = -shared -D_DLL -Wl,--export-all-symbols
+EXPLLINKLIBS  = $(ROOTLIBS) $(ROOTGLIBS)
+endif
+
+ifeq ($(CXX),)
+$(error $(ARCH) invalid architecture)
+endif
+
+#CXXFLAGS     += $(ROOTCFLAGS) -I/home/odjuvsla/Workspace/alice/AliRootDev/RAW -I/home/odjuvsla/Workspace/alice/AliRootDev/include
+CXXFLAGS     += $(ROOTCFLAGS) -I$(ALICE_ROOT)/RAW -I$(ALICE_ROOT)/include -I$(ALICE_ROOT)/PHOS -I$(ALICE_ROOT)/HLT/PHOS -I$(ALICE_ROOT)/HLT/BASE
+LDFLAGS      += $(ROOTLDFLAGS)
+LIBS          = $(ROOTLIBS) $(SYSLIBS)
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
+ROOTLIBS      = -L$(ROOTSYS)/lib -lXMLIO -lMinuit -lGeom -lVMC -lEG
+ALILIBS              = -L$(ALICE_ROOT)/lib/tgt_linux -lESD -lCDB -lAOD
+#ALILIBS             = -L/home/odjuvsla/Workspace/alice/AliRootDev/lib/tgt_linux -lESD -lCDB
+
+GLIBS         = $(ROOTGLIBS) $(SYSLIBS)
diff --git a/HLT/PHOS/clusterizer/clusterTest/clusterTest.cxx b/HLT/PHOS/clusterizer/clusterTest/clusterTest.cxx
new file mode 100644 (file)
index 0000000..bb853a7
--- /dev/null
@@ -0,0 +1,58 @@
+
+#include "AliHLTPHOSDigitContainerStruct.h"
+#include "AliHLTPHOSRecPointContainerStruct.h"
+#include "AliHLTPHOSClusterizer.h"
+#include "AliPHOSGetter.h"
+
+#define NLOOPS 10
+
+Int_t clusterTest();
+
+int main()
+{
+  clusterTest();
+  return 0;
+}
+
+Int_t clusterTest()
+{
+  
+  AliHLTPHOSDigitContainerStruct *digCon = new AliHLTPHOSDigitContainerStruct();  
+  AliHLTPHOSRecPointContainerStruct *recCon = new AliHLTPHOSRecPointContainerStruct();
+  AliHLTPHOSClusterizer *clusterizer = new AliHLTPHOSClusterizer();
+  AliPHOSGetter *getter = AliPHOSGetter::Instance("/home/odjuvsla/Workspace/Simulations/test3/galice.root");
+  int nClusters = 0;
+  int a = 0;
+
+  clock_t start = 0; 
+  clock_t end = 0;
+  clock_t total = 0;
+  
+  clusterizer->SetOfflineMode(getter);
+  clusterizer->SetRecPointContainer(recCon);
+
+  while(a < NLOOPS)
+    {
+      for(int k = 0; k < clusterizer->GetNEvents(); k++)
+       {
+                 
+         clusterizer->GetEvent(k);
+  
+         start = clock();
+         clusterizer->SetDigitContainer(digCon);
+         nClusters = clusterizer->ClusterizeEvent();
+         clusterizer->CalculateCenterOfGravity();
+         end = clock();
+
+         total += end - start;
+       }
+      a++;
+    }
+  printf("Clusterizing done!\n");
+  
+  printf("Time pr event (us): %f\n", (float)total/((float)clusterizer->GetNEvents()*(float)a));
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/clusterizer/clusterTest/clusterTest_old.cxx b/HLT/PHOS/clusterizer/clusterTest/clusterTest_old.cxx
new file mode 100644 (file)
index 0000000..8493f8d
--- /dev/null
@@ -0,0 +1,110 @@
+
+#include "AliHLTPHOSDigitContainerStruct.h"
+#include "AliHLTPHOSRecPointContainerStruct.h"
+#include "AliPHOSDigit.h"
+#include "AliPHOSGetter.h"
+#include "AliHLTPHOSClusterizer.h"
+#include "AliPHOSReconstructor.h"
+#include "AliPHOSGeometry.h"
+#include "TH2I.h"
+#include "TFile.h"
+
+Int_t clusterTest();
+
+int main()
+{
+  clusterTest();
+  return 0;
+}
+
+Int_t clusterTest()
+{
+  
+  AliHLTPHOSDigitContainerStruct *digCon = new AliHLTPHOSDigitContainerStruct();
+  
+  AliHLTPHOSRecPointContainerStruct *recCon = new AliHLTPHOSRecPointContainerStruct();
+  AliHLTPHOSClusterizer *clusterizer = new AliHLTPHOSClusterizer();
+
+  AliPHOSDigit * offDig = 0;
+  int nClusters = 0;
+  float energy = 0;
+  float time = 0;
+  Int_t coord[4];
+  int a = 0;
+
+  clock_t start = 0; 
+  clock_t end = 0;
+  clock_t total = 0;
+
+  AliPHOSGeometry *geometry = AliPHOSGeometry::GetInstance();
+
+  TH2F *hist = new TH2F("hist", "hist", 56, 1, 56, 64, 2, 65);
+  TFile *outfile = new TFile("histogram.root","recreate");
+
+  AliPHOSGetter *getter = AliPHOSGetter::Instance("/home/odjuvsla/Workspace/Simulations/test4/galice.root");
+  TClonesArray* digs = getter->Digits(); 
+  
+  clusterizer->SetOfflineMode("/home/odjuvsla/Workspace/Simulations/test4/galice.root");
+  clusterizer->SetRecPointContainer(recCon);
+
+  while(a < 5000)
+    {
+      for(int k = 0; k < getter->MaxEvent(); k++)
+       {
+         
+         //getter->Event(k,"D");
+         //digCon->fNDigits = digs->GetEntries();
+         
+         clusterizer->GetEvent(k);
+         
+         /*  for(int i = 0; i < digs->GetEntries(); i++)
+           {
+             offDig = (AliPHOSDigit*)digs->At(i);
+             digCon->fDigitDataStruct[i].fID = offDig->GetId();
+             digCon->fDigitDataStruct[i].fEnergy = offDig->GetEnergy();
+             digCon->fDigitDataStruct[i].fTime = offDig->GetTime();
+             hist->Fill(coord[3], coord[2], offDig->GetEnergy());
+           }
+           
+         
+         outfile->Open("histogram.root", "recreate");
+         hist->Write();
+         outfile->Close("histogram.root");
+         
+         */
+         
+         start = clock();
+         clusterizer->SetDigitContainer(digCon);
+         nClusters = clusterizer->ClusterizeEvent();
+         clusterizer->CalculateCenterOfGravity();
+         end = clock();
+
+         total += end - start;
+         /*
+           printf("Event #: %d\n", k);
+           printf("Number of clusters found: ", nClusters);
+
+           for(int m = 0; m < nClusters; m++)
+           {
+           energy = 0;
+           for (int n = 0; n < recCon->fRecPointArray[m].fMultiplicity; n++)
+           {
+           energy += recCon->fRecPointArray[m].fDigitsList[n].fEnergy;
+           }
+           printf("Clusters:\n");
+           printf("Cluster energy: %f\n", energy);
+           printf("Cluster position: x = %f -- z = %f\n", recCon->fRecPointArray[m].fX, recCon->fRecPointArray[m].fZ);
+           printf("Digit multiplicity: %d\n", recCon->fRecPointArray[m].fMultiplicity);
+           }
+         */     
+       }
+      a++;
+    }
+  printf("Clusterizing done!\n");
+  
+  printf("Time pr event (us): %f\n", (float)total/((float)getter->MaxEvent()*(float)a));
+  
+  return 0;
+}
+  
+  
diff --git a/HLT/PHOS/clusterizer/clusterTest/test.pair b/HLT/PHOS/clusterizer/clusterTest/test.pair
new file mode 100644 (file)
index 0000000..e69de29
diff --git a/HLT/PHOS/tru/AliHLTPHOSTRUMapper.cxx b/HLT/PHOS/tru/AliHLTPHOSTRUMapper.cxx
new file mode 100644 (file)
index 0000000..615ba5e
--- /dev/null
@@ -0,0 +1,88 @@
+ /**************************************************************************
+ * This file is property of and copyright by the ALICE HLT Project        *
+ * All rights reserved.                                                   *
+ *                                                                        *
+ * Primary Authors: Oystein Djuvsland                                     *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+#include "AliHLTPHOSTRUMapper.h"
+
+#define N_CHANNELS_ADC 8
+#define N_ADCS_TRU 14
+#define N_ADCS_MASK 2
+#define N_XCRYSTALS_TRU 16
+#define N_ZCRYSTALS_TRU 28
+#define N_ZCRYSTALS 56
+#define N_XCRYSTALS 64
+#define N_XCRYSTALS_ADC 16
+#define N_ZCRYSTALS_ADC 2
+#define CHANNEL_MASK 1
+
+AliHLTPHOSTRUMapper::AliHLTPHOSTRUMapper()
+{
+}
+
+
+AliHLTPHOSTRUMapper::~AliHLTPHOSTRUMapper()
+{
+}
+
+void
+AliHLTPHOSTRUMapper::GetChannelMask(x, z, Short_t *maskArray)
+{
+  Int_t chNb = -1;
+  Int_t ADCNb = -1;
+  
+  for(Int_t i = 0; i < N_ADCS_TRU/N_ADCS_MASK; i++)
+  {
+    maskArray[i] = 0;
+  }
+  
+  chNb = fChannelLookupArrayPtr[x];
+  
+  ADCNb = N_ADCS_TRU - z/N_ZCRYSTALS_ADC;
+  
+  maskArray[(ADCNb-1)/N_ADCS_MASK] = (CHANNEL_MASK << chNb)  << ((1 - ADCNb % N_ADCS_MASK) * N_CHANNELS_ADC );
+  
+}
+
+Int_t
+AliHLTPHOSTRUMapper::GetTRUMask(x, z, Short_t *maskArray)
+{
+  Int_t TRUNb = x/N_XCRYSTALS_TRU + z/N_ZCRYSTALS_TRU;
+  
+  GetChannelMask(x, z, maskArray);
+  
+  return TRUNb;
+}
+
+void 
+AliHLTPHOSTRUMapper::GetLookUpTable()
+{
+  ifstream infile;
+  
+  inFile.open("channelLookup.txt");
+  
+  for(Int_t i = 0; i < 8; i++)
+  {
+    inFile >> fChannelLookupArrayPtr[i];  
+  }
+    
+  inFile.close();
+}
+  
+  
+  
+  
+  
+  
+  
+  
\ No newline at end of file
diff --git a/HLT/PHOS/tru/AliHLTPHOSTRUMapper.h b/HLT/PHOS/tru/AliHLTPHOSTRUMapper.h
new file mode 100644 (file)
index 0000000..39cc784
--- /dev/null
@@ -0,0 +1,46 @@
+//
+// C++ Interface: AliHLTPHOSTRUMapper
+//
+// Description: 
+//
+//
+// Author: Øystein Djuvsland <oystein.djuvsland@gmail.com>, (C) 2007
+//
+// Copyright: See COPYING file that comes with this distribution
+//
+//
+ /**************************************************************************
+ * This file is property of and copyright by the ALICE HLT Project        *
+ * All rights reserved.                                                   *
+ *                                                                        *
+ * Primary Authors: Oystein Djuvsland                                     *
+ *                                                                        *
+ * Permission to use, copy, modify and distribute this software and its   *
+ * documentation strictly for non-commercial purposes is hereby granted   *
+ * without fee, provided that the above copyright notice appears in all   *
+ * copies and that both the copyright notice and this permission notice   *
+ * appear in the supporting documentation. The authors make no claims     *
+ * about the suitability of this software for any purpose. It is          *
+ * provided "as is" without express or implied warranty.                  *
+ **************************************************************************/
+
+#ifndef ALIHLTPHOSTRUMAPPER_H
+#define ALIHLTPHOSTRUMAPPER_H
+
+/**
+       @author Øystein Djuvsland <oystein.djuvsland@gmail.com>
+*/
+class AliHLTPHOSTRUMapper : public AliHLTPHOSBase
+{
+public:
+    AliHLTPHOSTRUMapper();
+
+    ~AliHLTPHOSTRUMapper();
+    
+    Int_t GetChannelMask(Int_t x, Int_t z, Short_t *maskArray);
+    Int_t GetTRUMask(Int_t x, Int_t z, Short_t *maskArray);
+
+};
+
+#endif
diff --git a/HLT/PHOS/tru/alihltphosmipcounter_interface.h b/HLT/PHOS/tru/alihltphosmipcounter_interface.h
new file mode 100644 (file)
index 0000000..0512243
--- /dev/null
@@ -0,0 +1,17 @@
+#ifndef __ALIHLTPHOSMIPCOUNTER_INTERFACE_H
+#define __ALIHLTPHOSMIPCOUNTER_INTERFACE_H
+
+class AliHLTPHOSMIPCounterInterface
+{
+public:
+    AliHLTPHOSMIPCounterInterface() {}
+    virtual ~AliHLTPHOSMIPCounterInterface() {}
+
+
+private:
+    AliHLTPHOSMIPCounterInterface( const AliHLTPHOSMIPCounterInterface& source );
+    void operator = ( const AliHLTPHOSMIPCounterInterface& source );
+};
+
+
+#endif // __ALIHLTPHOSMIPCOUNTER_INTERFACE_H