SetDebug removed and AliLog is implemented

diff --git a/PMD/AliPMDClusterFinder.cxx b/PMD/AliPMDClusterFinder.cxx
index 16320a00b8ad5611c1233c4fd5c6c03103cd9672..beac2228f7d303e056b492f8f8b51d2ea39e8912 100644 (file)
--- a/PMD/AliPMDClusterFinder.cxx
+++ b/PMD/AliPMDClusterFinder.cxx
@@ -27,6 +27,7 @@
 #include <TObjArray.h>
 #include <TClonesArray.h>
 
+#include "AliLog.h"
 #include "AliRunLoader.h"
 #include "AliLoader.h"
 #include "AliRawReader.h"
@@ -38,8 +39,25 @@
 #include "AliPMDrecpoint1.h"
 #include "AliPMDRawStream.h"
 
+
+
 ClassImp(AliPMDClusterFinder)
 
+AliPMDClusterFinder::AliPMDClusterFinder():
+  fRunLoader(0),
+  fPMDLoader(0),
+  fTreeD(0),
+  fTreeR(0),
+  fDigits(new TClonesArray("AliPMDdigit", 1000)),
+  fRecpoints(new TClonesArray("AliPMDrecpoint1", 1000)),
+  fNpoint(0),
+  fEcut(0.)
+{
+//
+// Constructor
+//
+}
+// ------------------------------------------------------------------------- //
 AliPMDClusterFinder::AliPMDClusterFinder(AliRunLoader* runLoader):
   fRunLoader(runLoader),
   fPMDLoader(runLoader->GetLoader("PMDLoader")),
@@ -48,7 +66,6 @@ AliPMDClusterFinder::AliPMDClusterFinder(AliRunLoader* runLoader):
   fDigits(new TClonesArray("AliPMDdigit", 1000)),
   fRecpoints(new TClonesArray("AliPMDrecpoint1", 1000)),
   fNpoint(0),
-  fDebug(0),
   fEcut(0.)
 {
 //
@@ -88,16 +105,17 @@ void AliPMDClusterFinder::Digits2RecPoints(Int_t ievt)
 
   TObjArray *pmdcont = new TObjArray();
   AliPMDClustering *pmdclust = new AliPMDClustering();
-  pmdclust->SetDebug(fDebug);
+
   pmdclust->SetEdepCut(fEcut);
 
   fRunLoader->GetEvent(ievt);
-  //cout << " ***** Beginning::Digits2RecPoints *****" << endl;
+
 
   fTreeD = fPMDLoader->TreeD();
   if (fTreeD == 0x0)
     {
-      cout << " Can not get TreeD" << endl;
+      AliFatal("AliPMDClusterFinder: Can not get TreeD");
+
     }
   AliPMDdigit  *pmddigit;
   TBranch *branch = fTreeD->GetBranch("PMDDigit");
@@ -140,7 +158,9 @@ void AliPMDClusterFinder::Digits2RecPoints(Int_t ievt)
       pmdclust->DoClust(idet,ismn,fCellADC,pmdcont);
       
       Int_t nentries1 = pmdcont->GetEntries();
-//      cout << " nentries1 = " << nentries1 << endl;
+
+      AliDebug(1,Form("Total number of clusters/module = %d",nentries1));
+
       for (Int_t ient1 = 0; ient1 < nentries1; ient1++)
        {
          AliPMDcluster *pmdcl = (AliPMDcluster*)pmdcont->UncheckedAt(ient1);
@@ -169,7 +189,201 @@ void AliPMDClusterFinder::Digits2RecPoints(Int_t ievt)
   delete pmdclust;
   delete pmdcont;
     
-  //  cout << " ***** End::Digits2RecPoints *****" << endl;
+}
+// ------------------------------------------------------------------------- //
+
+void AliPMDClusterFinder::Digits2RecPoints(AliRawReader *rawReader,
+                                          TTree *clustersTree)
+{
+  // Converts RAW data to recpoints after running clustering
+  // algorithm on CPV and PREshower plane
+  //
+
+  Float_t  clusdata[5];
+
+  TObjArray *pmdcont = new TObjArray();
+  AliPMDClustering *pmdclust = new AliPMDClustering();
+
+  pmdclust->SetEdepCut(fEcut);
+
+  ResetRecpoint();
+
+  Int_t bufsize = 16000;
+  clustersTree->Branch("PMDRecpoint", &fRecpoints, bufsize); 
+
+  const Int_t kDDL = 6;
+  const Int_t kRow = 48;
+  const Int_t kCol = 96;
+
+  Int_t idet = 0;
+  Int_t iSMN = 0;
+  
+  for (Int_t indexDDL = 0; indexDDL < kDDL; indexDDL++)
+    {
+      if (indexDDL < 4)
+       {
+         iSMN = 6;
+       }
+      else if (indexDDL >= 4)
+       {
+         iSMN = 12;
+       }
+      Int_t ***precpvADC;
+      precpvADC = new int **[iSMN];
+      for (Int_t i=0; i<iSMN; i++) precpvADC[i] = new int *[kRow];
+      for (Int_t i=0; i<iSMN;i++)
+       {
+         for (Int_t j=0; j<kRow; j++) precpvADC[i][j] = new int [kCol];
+       }
+      for (Int_t i = 0; i < iSMN; i++)
+       {
+         for (Int_t j = 0; j < kRow; j++)
+           {
+             for (Int_t k = 0; k < kCol; k++)
+               {
+                 precpvADC[i][j][k] = 0;
+               }
+           }
+       }
+      ResetCellADC();
+      rawReader->Reset();
+      AliPMDRawStream pmdinput(rawReader);
+      rawReader->Select(12, indexDDL, indexDDL);
+      while(pmdinput.Next())
+       {
+         Int_t det = pmdinput.GetDetector();
+         Int_t smn = pmdinput.GetSMN();
+         //Int_t mcm = pmdinput.GetMCM();
+         //Int_t chno = pmdinput.GetChannel();
+         Int_t row = pmdinput.GetRow();
+         Int_t col = pmdinput.GetColumn();
+         Int_t sig = pmdinput.GetSignal();
+         
+         Int_t indexsmn = 0;
+
+         if (indexDDL < 4)
+           {
+             if (det != 0)
+               AliError(Form("*DDL %d and Detector NUMBER %d NOT MATCHING *",
+                             indexDDL, det));
+             indexsmn = smn - indexDDL * 6;
+           }
+         else if (indexDDL == 4)
+           {
+             if (det != 1)
+               AliError(Form("*DDL %d and Detector NUMBER %d NOT MATCHING *",
+                             indexDDL, det));
+             if (smn < 6)
+               {
+                 indexsmn = smn;
+               }
+             else if (smn >= 12 && smn < 18)
+               {
+                 indexsmn = smn - 6;
+               }
+           }
+         else if (indexDDL == 5)
+           {
+             if (det != 1)
+               AliError(Form("*DDL %d and Detector NUMBER %d NOT MATCHING *",
+                             indexDDL, det));
+             if (smn >= 6 && smn < 12)
+               {
+                 indexsmn = smn - 6;
+               }
+             else if (smn >= 18 && smn < 24)
+               {
+                 indexsmn = smn - 12;
+               }
+           }         
+         precpvADC[indexsmn][row][col] = sig;
+       } // while loop
+
+      Int_t ismn = 0;
+      for (Int_t indexsmn = 0; indexsmn < iSMN; indexsmn++)
+       {
+         ResetCellADC();
+         for (Int_t irow = 0; irow < kRow; irow++)
+           {
+             for (Int_t icol = 0; icol < kCol; icol++)
+               {
+                 fCellADC[irow][icol] = 
+                   (Double_t) precpvADC[indexsmn][irow][icol];
+               } // row
+           }     // col
+         if (indexDDL < 4)
+           {
+             ismn = indexsmn + indexDDL * 6;
+             idet = 0;
+           }
+         else if (indexDDL == 4)
+           {
+             if (indexsmn < 6)
+               {
+                 ismn = indexsmn;
+               }
+             else if (indexsmn >= 6 && indexsmn < 12)
+               {
+                 ismn = indexsmn + 6;
+               }
+             idet = 1;
+           }
+         else if (indexDDL == 5)
+           {
+             if (indexsmn < 6)
+               {
+                 ismn = indexsmn + 6;
+               }
+             else if (indexsmn >= 6 && indexsmn < 12)
+               {
+                 ismn = indexsmn + 12;
+               }
+             idet = 1;
+           }
+
+
+         pmdclust->DoClust(idet,ismn,fCellADC,pmdcont);
+         Int_t nentries1 = pmdcont->GetEntries();
+
+         AliDebug(1,Form("Total number of clusters/module = %d",nentries1));
+
+         for (Int_t ient1 = 0; ient1 < nentries1; ient1++)
+           {
+             AliPMDcluster *pmdcl = 
+               (AliPMDcluster*)pmdcont->UncheckedAt(ient1);
+             idet        = pmdcl->GetDetector();
+             ismn        = pmdcl->GetSMN();
+             clusdata[0] = pmdcl->GetClusX();
+             clusdata[1] = pmdcl->GetClusY();
+             clusdata[2] = pmdcl->GetClusADC();
+             clusdata[3] = pmdcl->GetClusCells();
+             clusdata[4] = pmdcl->GetClusRadius();
+
+             AddRecPoint(idet,ismn,clusdata);
+           }
+         pmdcont->Clear();
+         
+         //fTreeR->Fill();
+         clustersTree->Fill();
+         ResetRecpoint();
+
+
+       } // smn
+
+      for (Int_t i=0; i<iSMN; i++)
+       {
+         for (Int_t j=0; j<kRow; j++) delete [] precpvADC[i][j];
+       }
+      for (Int_t i=0; i<iSMN; i++) delete [] precpvADC[i];
+      delete precpvADC;
+    } // DDL Loop
+  
+  ResetCellADC();
+  
+  //   delete the pointers
+  delete pmdclust;
+  delete pmdcont;
+
 }
 // ------------------------------------------------------------------------- //
 
@@ -183,7 +397,7 @@ void AliPMDClusterFinder::Digits2RecPoints(Int_t ievt, AliRawReader *rawReader)
 
   TObjArray *pmdcont = new TObjArray();
   AliPMDClustering *pmdclust = new AliPMDClustering();
-  pmdclust->SetDebug(fDebug);
+
   pmdclust->SetEdepCut(fEcut);
 
   fRunLoader->GetEvent(ievt);
@@ -252,15 +466,15 @@ void AliPMDClusterFinder::Digits2RecPoints(Int_t ievt, AliRawReader *rawReader)
          if (indexDDL < 4)
            {
              if (det != 0)
-               printf(" *** DDL %d and Detector NUMBER %d NOT MATCHING *** ",
-                      indexDDL, det);
+               AliError(Form("*DDL %d and Detector NUMBER %d NOT MATCHING *",
+                             indexDDL, det));
              indexsmn = smn - indexDDL * 6;
            }
          else if (indexDDL == 4)
            {
              if (det != 1)
-               printf(" *** DDL %d and Detector NUMBER %d NOT MATCHING *** ",
-                      indexDDL, det);
+               AliError(Form("*DDL %d and Detector NUMBER %d NOT MATCHING *",
+                             indexDDL, det));
              if (smn < 6)
                {
                  indexsmn = smn;
@@ -273,8 +487,8 @@ void AliPMDClusterFinder::Digits2RecPoints(Int_t ievt, AliRawReader *rawReader)
          else if (indexDDL == 5)
            {
              if (det != 1)
-               printf(" *** DDL %d and Detector NUMBER %d NOT MATCHING *** ",
-                      indexDDL, det);
+               AliError(Form("*DDL %d and Detector NUMBER %d NOT MATCHING *",
+                             indexDDL, det));
              if (smn >= 6 && smn < 12)
                {
                  indexsmn = smn - 6;
@@ -332,7 +546,9 @@ void AliPMDClusterFinder::Digits2RecPoints(Int_t ievt, AliRawReader *rawReader)
 
          pmdclust->DoClust(idet,ismn,fCellADC,pmdcont);
          Int_t nentries1 = pmdcont->GetEntries();
-         //      cout << " nentries1 = " << nentries1 << endl;
+
+         AliDebug(1,Form("Total number of clusters/module = %d",nentries1));
+
          for (Int_t ient1 = 0; ient1 < nentries1; ient1++)
            {
              AliPMDcluster *pmdcl = 
@@ -372,7 +588,6 @@ void AliPMDClusterFinder::Digits2RecPoints(Int_t ievt, AliRawReader *rawReader)
   delete pmdclust;
   delete pmdcont;
 
-  //  cout << " ***** End::Digits2RecPoints :: Raw *****" << endl;
 }
 // ------------------------------------------------------------------------- //
 void AliPMDClusterFinder::SetCellEdepCut(Float_t ecut)
@@ -380,11 +595,6 @@ void AliPMDClusterFinder::SetCellEdepCut(Float_t ecut)
   fEcut = ecut;
 }
 // ------------------------------------------------------------------------- //
-void AliPMDClusterFinder::SetDebug(Int_t idebug)
-{
-  fDebug = idebug;
-}
-// ------------------------------------------------------------------------- //
 void AliPMDClusterFinder::AddRecPoint(Int_t idet,Int_t ismn,Float_t *clusdata)
 {
   // Add Reconstructed points

diff --git a/PMD/AliPMDClusterFinder.h b/PMD/AliPMDClusterFinder.h
index 7b76131799f4678c2e6588b822655f61bd0bb9f7..2a6eeb9cf72d9ddf369dd05f8f55450c4a9b9c19 100644 (file)
--- a/PMD/AliPMDClusterFinder.h
+++ b/PMD/AliPMDClusterFinder.h
@@ -19,18 +19,19 @@ class AliLoader;
 class AliRunLoader;
 class AliRawReader;
 
-class AliPMDClusterFinder
+class AliPMDClusterFinder : public TObject
 {
 
  public:
 
+  AliPMDClusterFinder();
   AliPMDClusterFinder(AliRunLoader* runLoader);
   virtual ~AliPMDClusterFinder();
 
   void Digits2RecPoints(Int_t ievt);
+  void Digits2RecPoints(AliRawReader *rawReader, TTree *clustersTree);
   void Digits2RecPoints(Int_t ievt, AliRawReader *rawReader);
   void SetCellEdepCut(Float_t ecut);
-  void SetDebug(Int_t idebug);
   void AddRecPoint(Int_t idet, Int_t ismn, Float_t * clusdata);
   void ResetCellADC();
   void ResetRecpoint();
@@ -51,14 +52,13 @@ class AliPMDClusterFinder
 
   Int_t   fNpoint;          // 
   Int_t   fDetNo;           // Detector Number (0:PRE, 1:CPV)
-  Int_t   fDebug;           // Debugging switch (0:NO, 1:YES)
   Float_t fEcut;            // Energy/ADC cut per cell
 
   static const Int_t fgkRow = 48; // Total number of rows in one unitmodule
   static const Int_t fgkCol = 96; // Total number of cols in one unitmodule
   Double_t fCellADC[fgkRow][fgkCol]; // Array containing individual cell ADC
 
-  ClassDef(AliPMDClusterFinder,6) // To run PMD clustering
+  ClassDef(AliPMDClusterFinder,7) // To run PMD clustering
 };
 #endif
 

diff --git a/PMD/AliPMDClustering.cxx b/PMD/AliPMDClustering.cxx
index 25e237ae457b5f382bcf6a1a934e9d83deac1c88..f9c766413b22785318f5bec30124e1b1ca879b96 100644 (file)
--- a/PMD/AliPMDClustering.cxx
+++ b/PMD/AliPMDClustering.cxx
@@ -42,16 +42,17 @@
 #include "Riostream.h"
 #include <TNtuple.h>
 #include <TObjArray.h>
+#include <stdio.h>
+
 #include "AliPMDcluster.h"
 #include "AliPMDClustering.h"
-#include <stdio.h>
+#include "AliLog.h"
 
 ClassImp(AliPMDClustering)
 
 const Double_t AliPMDClustering::fgkSqroot3by2=0.8660254;  // sqrt(3.)/2.
 
 AliPMDClustering::AliPMDClustering():
-  fDebug(0),
   fCutoff(0.0)
 {
   for(int i = 0; i < kNDIMX; i++)
@@ -108,28 +109,22 @@ void AliPMDClustering::DoClust(Int_t idet, Int_t ismn, Double_t celladc[48][96],
       if (fEdepCell[i1][i2] > cutoff ) nmx1 = nmx1 + 1;
     }
   // nmx1 --- number of cells having ener dep >= cutoff
-  if (fDebug == 1)
-    {
-      cout << " nmx1 " << nmx1 << endl;
-    }
+
+  AliDebug(1,Form("Number of cells having energy >= %f are %d",cutoff,nmx1));
 
   //  if (nmx1 == 0 | nmx1 == -1) return;
 
   if (nmx1 == 0) nmx1 = 1;
   ave=ave/nmx1;
-  if (fDebug == 1)
-    {
-      cout <<"kNMX " << kNMX << " nmx1 " << nmx1<< " ave "<<ave<<
-       " cutoff " << cutoff << endl;
-    }
 
+  AliDebug(1,Form("Number of cells in a SuperM = %d and Average = %f",
+                 kNMX,ave));
+          
   incr = CrClust(ave, cutoff, nmx1);
   RefClust(incr);
-  if (fDebug == 1)
-    {
-      cout << "fClno " << fClno << endl;
-    }
 
+  AliDebug(1,Form("Detector Plane = %d  Serial Module No = %d Number of clusters = %d",idet, ismn, fClno));
+  
   for(i1=0; i1<=fClno; i1++)
     {
       Float_t cluXC    = (Float_t) fClusters[0][i1];
@@ -225,11 +220,8 @@ int AliPMDClustering::CrClust(double ave, double cutoff, int nmx1)
   // ofstream ofl0("cells_loc",ios::out);
   // initialize fInfocl[2][kNDIMX][kNDIMY]
 
-  if (fDebug == 1)
-    {
-      printf(" *** Inside CrClust **  kNMX = %d nmx1 = %d kNDIMX = %d kNDIMY = %d ave = %f cutoff = %f\n",
-            kNMX,nmx1,kNDIMX,kNDIMY,ave,cutoff);
-    }
+  AliDebug(1,Form("kNMX = %d nmx1 = %d kNDIMX = %d kNDIMY = %d ave = %f cutoff = %f",kNMX,nmx1,kNDIMX,kNDIMY,ave,cutoff));
+  
   for (j=0; j < kNDIMX; j++){
     for(k=0; k < kNDIMY; k++){
       fInfocl[0][j][k] = 0;
@@ -349,17 +341,16 @@ void AliPMDClustering::RefClust(int incr)
   for(i=0; i<incr; i++){
     if(fInfcl[0][i] != nsupcl){ nsupcl=nsupcl+1; }
     if (nsupcl > 4500) {
-      Error("RefClust", "Too many superclusters!");
+      AliWarning("RefClust: Too many superclusters!");
       nsupcl = 4500;
       break;
     }
     ncl[nsupcl]=ncl[nsupcl]+1;
   }
-  if (fDebug == 1)
-    {
-      cout << " # of cells " <<incr+1 << " # of superclusters " << nsupcl+1
-          << endl;
-    }
+
+  AliDebug(1,Form("Number of cells = %d Number of Superclusters = %d",
+                 incr+1,nsupcl+1));
+
   id=-1;
   icl=-1;
   for(i=0; i<nsupcl; i++){
@@ -370,7 +361,7 @@ void AliPMDClustering::RefClust(int incr)
       // cluster center at the centyer of the cell
       // cluster radius = half cell dimension
       if (fClno >= 5000) {
-       Error("RefClust", "Too many clusters!");
+       AliWarning("RefClust: Too many clusters! more than 5000");
        return;
       }
       fClno = fClno + 1;
@@ -390,7 +381,7 @@ void AliPMDClustering::RefClust(int incr)
       id   = id + 1;
       icl  = icl+1;
       if (fClno >= 5000) {
-       Error("RefClust", "Too many clusters!");
+       AliWarning("RefClust: Too many clusters! more than 5000");
        return;
       }
       fClno = fClno+1;
@@ -536,7 +527,7 @@ void AliPMDClustering::RefClust(int incr)
       }
       for(j=0; j<=ig; j++){
        if (fClno >= 5000) {
-         Error("RefClust", "Too many clusters!");
+         AliWarning("RefClust: Too many clusters! more than 5000");
          return;
        }
        fClno               = fClno + 1;
@@ -721,7 +712,7 @@ double AliPMDClustering::Ranmar() const
       cm = 16777213./16777216.;
     }
     else{
-      cout << " wrong initialization " << endl;
+      AliWarning("Wrong initialization");
     }
   }
   else{
@@ -745,7 +736,3 @@ void AliPMDClustering::SetEdepCut(Float_t decut)
   fCutoff = decut;
 }
 // ------------------------------------------------------------------------ //
-void AliPMDClustering::SetDebug(Int_t idebug)
-{
-  fDebug = idebug;
-}

diff --git a/PMD/AliPMDClustering.h b/PMD/AliPMDClustering.h
index d4db3d09ffdae07c4b8d5037fa857e2511bef1e0..bfc939e9c386459e77b84ed90969e4ffa6a5a412 100644 (file)
--- a/PMD/AliPMDClustering.h
+++ b/PMD/AliPMDClustering.h
@@ -37,21 +37,20 @@ class AliPMDClustering: public TObject
   AliPMDClustering();
   virtual ~AliPMDClustering();
 
-  void DoClust(Int_t idet, Int_t ismn, Double_t celladc[][96],
-              TObjArray *pmdcont);
-  void Order();
-
-  Int_t CrClust(Double_t ave, Double_t cutoff, Int_t nmx1);
-  void RefClust(Int_t incr);
-  void GaussFit(Int_t ncell, Int_t nclust, Double_t &x,
-               Double_t &y, Double_t &z, Double_t &xc,
-               Double_t &yc, Double_t &zc, Double_t &rc);
+  void     DoClust(Int_t idet, Int_t ismn, Double_t celladc[][96],
+                  TObjArray *pmdcont);
+  void     Order();
+  
+  Int_t    CrClust(Double_t ave, Double_t cutoff, Int_t nmx1);
+  void     RefClust(Int_t incr);
+  void     GaussFit(Int_t ncell, Int_t nclust, Double_t &x,
+                   Double_t &y, Double_t &z, Double_t &xc,
+                   Double_t &yc, Double_t &zc, Double_t &rc);
   Double_t Distance(Double_t x1, Double_t y1,
                    Double_t x2, Double_t y2);
   Double_t Ranmar() const;
-  void SetEdepCut(Float_t decut);
-  void SetDebug(Int_t idebug);
-
+  void     SetEdepCut(Float_t decut);
+  
  protected:
 
   static const Double_t fgkSqroot3by2;  // fgkSqroot3by2 = sqrt(3.)/2.
@@ -114,9 +113,8 @@ class AliPMDClustering: public TObject
     coord --- x and y coordinates of center of each cell
   */
 
-  Int_t fDebug;    // Switch for debug (1:Print, 0:Noprint)
   Float_t fCutoff; // Energy(ADC) cutoff per cell before clustering
 
-  ClassDef(AliPMDClustering,3) // Does clustering for PMD
+  ClassDef(AliPMDClustering,5) // Does clustering for PMD
 };
 #endif