1 class AliAnalysisGrid;
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3 void RunAnalysisAODVertexingHF()
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6 // Test macro for AliAnalysisTaskSE's for heavy-flavour candidates
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7 // It has the structure of a Analysis Train:
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8 // - in this macro, change things related to running mode
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9 // and input preparation
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10 // - add your task using a AddTaskXXX macro
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12 // A.Dainese, andrea.dainese@lnl.infn.it
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13 // "grid" mode added by R.Bala, bala@to.infn.it
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17 TString analysisMode = "grid"; // "local", "grid", or "proof" (not yet)
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18 TString inputMode = "list"; // "list", "xml", or "dataset" (not yet)
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19 Long64_t nentries=1234567890,firstentry=0;
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20 Bool_t useParFiles=kFALSE;
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21 Bool_t useAlienPlugin=kTRUE;
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22 TString pluginmode="test";
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23 TString loadMacroPath="$ALICE_ROOT/PWG3/vertexingHF/";
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26 if(analysisMode=="grid") {
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28 TGrid::Connect("alien://");
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29 } else if(analysisMode=="proof") {
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30 // Connect to the PROOF cluster
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31 printf("PROOF mode not yet functional..\n");
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33 TProof::Open("alicecaf");
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34 //TProof::Reset("alicecaf");
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38 // AliRoot libraries
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39 if(analysisMode=="local" || analysisMode=="grid") {
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40 TString loadLibraries="LoadLibraries.C"; loadLibraries.Prepend(loadMacroPath.Data());
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41 gROOT->LoadMacro(loadLibraries.Data());
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42 LoadLibraries(useParFiles);
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43 } else if (analysisMode=="proof") {
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44 gSystem->Load("libTree.so");
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45 gSystem->Load("libGeom.so");
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46 gSystem->Load("libPhysics.so");
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47 gSystem->Load("libVMC.so");
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48 // Enable the needed packages
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49 //gProof->ClearPackages();
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51 gProof->UploadPackage("AF-v4-16");
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52 gProof->EnablePackage("AF-v4-16");
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54 TString parDir="/afs/cern.ch/user/d/dainesea/code/";
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56 // --- Enable the STEERBase Package
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57 parFile="STEERBase.par"; parFile.Prepend(parDir.Data());
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58 gProof->UploadPackage(parFile.Data());
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59 gProof->EnablePackage("STEERBase");
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60 // --- Enable the ESD Package
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61 parFile="ESD.par"; parFile.Prepend(parDir.Data());
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62 gProof->UploadPackage(parFile.Data());
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63 gProof->EnablePackage("ESD");
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64 // --- Enable the AOD Package
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65 parFile="AOD.par"; parFile.Prepend(parDir.Data());
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66 gProof->UploadPackage(parFile.Data());
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67 gProof->EnablePackage("AOD");
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68 // --- Enable the ANALYSIS Package
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69 parFile="ANALYSIS.par"; parFile.Prepend(parDir.Data());
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70 gProof->UploadPackage(parFile.Data());
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71 gProof->EnablePackage("ANALYSIS");
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72 // --- Enable the ANALYSISalice Package
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73 parFile="ANALYSISalice.par"; parFile.Prepend(parDir.Data());
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74 gProof->UploadPackage(parFile.Data());
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75 gProof->EnablePackage("ANALYSISalice");
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76 // --- Enable the CORRFW Package
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77 parFile="CORRFW.par"; parFile.Prepend(parDir.Data());
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78 gProof->UploadPackage(parFile.Data());
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79 gProof->EnablePackage("CORRFW");
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80 // --- Enable the PWG3base Package
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81 parFile="PWG3base.par"; parFile.Prepend(parDir.Data());
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82 gProof->UploadPackage(parFile.Data());
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83 gProof->EnablePackage("PWG3base");
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84 // --- Enable the PWG3vertexingHF Package
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85 parFile="PWG3vertexingHF.par"; parFile.Prepend(parDir.Data());
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86 gProof->UploadPackage(parFile.Data());
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87 gProof->EnablePackage("PWG3vertexingHF");
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88 // --- Enable the JETAN Package
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89 parFile="JETAN.par"; parFile.Prepend(parDir.Data());
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90 gProof->UploadPackage(parFile.Data());
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91 gProof->EnablePackage("JETAN");
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92 // --- Enable the PWG3muon Package
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93 parFile="PWG3muon.par"; parFile.Prepend(parDir.Data());
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94 gProof->UploadPackage(parFile.Data());
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95 gProof->EnablePackage("PWG3muon");
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96 // --- Enable the PWG4PartCorrBase Package
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97 parFile="PWG4PartCorrBase.par"; parFile.Prepend(parDir.Data());
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98 gProof->UploadPackage(parFile.Data());
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99 gProof->EnablePackage("PWG4PartCorrBase");
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100 // --- Enable the PWG4PartCorrDep Package
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101 parFile="PWG4PartCorrDep.par"; parFile.Prepend(parDir.Data());
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102 gProof->UploadPackage(parFile.Data());
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103 gProof->EnablePackage("PWG4PartCorrDep");
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105 gProof->ShowEnabledPackages(); // show a list of enabled packages
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109 // Create Alien plugin, if requested
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110 if(useAlienPlugin) {
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111 AliAnalysisGrid *alienHandler = CreateAlienHandler(pluginmode,useParFiles);
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112 if(!alienHandler) return;
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116 //-------------------------------------------------------------------
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117 // Prepare input chain
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118 TChain *chainAOD = 0;
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119 TString dataset; // for proof
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121 if(!useAlienPlugin) {
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122 TString makeAODInputChain="MakeAODInputChain.C"; makeAODInputChain.Prepend(loadMacroPath.Data());
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123 gROOT->LoadMacro(makeAODInputChain.Data());
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124 if(inputMode=="list") {
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126 chainAOD = MakeAODInputChain();// with this it reads ./AliAOD.root and ./AliAOD.VertexingHF.root
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127 //chainAOD = MakeAODInputChain("alien:///alice/cern.ch/user/r/rbala/newtrain/out_lhc08x/180100/",1,1);
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128 } else if(inputMode=="xml") {
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130 chainAOD = MakeAODInputChain("collection_aod.xml","collection_aodHF.xml");
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131 } else if(inputMode=="dataset") {
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133 //gProof->ShowDataSet();
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134 dataset="/ITS/dainesea/AODVertexingHF_LHC08x_180100_small";
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135 chainAOD = MakeAODInputChainCAF(dataset.Data());
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139 // Create the analysis manager
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140 AliAnalysisManager *mgr = new AliAnalysisManager("My Manager","My Manager");
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141 mgr->SetDebugLevel(10);
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142 // Connect plug-in to the analysis manager
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143 if(useAlienPlugin) mgr->SetGridHandler(alienHandler);
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147 AliAODInputHandler *inputHandler = new AliAODInputHandler();
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148 mgr->SetInputEventHandler(inputHandler);
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149 //-------------------------------------------------------------------
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152 //-------------------------------------------------------------------
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153 // Analysis tasks (wagons of the train)
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157 taskName="AddTaskCompareHF.C"; taskName.Prepend(loadMacroPath.Data());
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158 gROOT->LoadMacro(taskName.Data());
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159 AliAnalysisTaskSECompareHF *cmpTask = AddTaskCompareHF();
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161 taskName="AddTaskDplus.C"; taskName.Prepend(loadMacroPath.Data());
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162 gROOT->LoadMacro(taskName.Data());
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163 AliAnalysisTaskSEDplus *dplusTask = AddTaskDplus();
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165 //taskName="AddTaskSelectHF.C"; taskName.Prepend(loadMacroPath.Data());
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166 //gROOT->LoadMacro(taskName.Data());
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167 //AliAnalysisTaskSESelectHF *seleTask = AddTaskSelectHF();
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169 taskName="AddTaskBkgLikeSignD0.C"; taskName.Prepend(loadMacroPath.Data());
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170 gROOT->LoadMacro(taskName.Data());
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171 AliAnalysisTaskSEBkgLikeSignD0 *lsD0Task = AddTaskBkgLikeSignD0();
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173 taskName="AddTaskBkgLikeSignJPSI.C"; taskName.Prepend(loadMacroPath.Data());
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174 gROOT->LoadMacro(taskName.Data());
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175 AliAnalysisTaskSEBkgLikeSignJPSI *lsJPSITask = AddTaskBkgLikeSignJPSI();
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177 //taskName="AddTaskBtoJPSItoEle.C"; taskName.Prepend(loadMacroPath.Data());
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178 //gROOT->LoadMacro(taskName.Data());
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179 //AliAnalysisTaskSEBtoJPSItoEle *jpsiTask = AddTaskBtoJPSItoEle();
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181 //taskName="AddTaskCF.C"; taskName.Prepend(loadMacroPath.Data());
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182 //gROOT->LoadMacro(taskName.Data());
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183 //AliCFHeavyFlavourTask *cfTask = AddTaskCF();
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185 //taskName="AddTaskCFMultiVar.C"; taskName.Prepend(loadMacroPath.Data());
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186 //gROOT->LoadMacro(taskName.Data());
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187 //AliCFHeavyFlavourTaskMultiVar *cfmvTask = AddTaskCFMultiVar();
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189 taskName="AddTaskCFMultiVarMultiStep.C"; taskName.Prepend(loadMacroPath.Data());
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190 gROOT->LoadMacro(taskName.Data());
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191 //AliCFHeavyFlavourTaskMultiVarMultiStep *cfmvmsTask = AddTaskCFMultiVarMultiStep();
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194 //-------------------------------------------------------------------
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197 // Run the analysis
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199 if(chainAOD) printf("CHAIN HAS %d ENTRIES\n",(Int_t)chainAOD->GetEntries());
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201 if(!mgr->InitAnalysis()) return;
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202 mgr->PrintStatus();
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203 if(analysisMode=="grid" && !useAlienPlugin) analysisMode="local";
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204 mgr->StartAnalysis(analysisMode.Data(),chainAOD,nentries,firstentry);
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208 //_____________________________________________________________________________
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210 AliAnalysisGrid* CreateAlienHandler(TString pluginmode="test",Bool_t useParFiles=kFALSE)
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212 // Check if user has a valid token, otherwise make one. This has limitations.
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213 // One can always follow the standard procedure of calling alien-token-init then
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214 // source /tmp/gclient_env_$UID in the current shell.
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215 if (!AliAnalysisGrid::CreateToken()) return NULL;
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216 AliAnalysisAlien *plugin = new AliAnalysisAlien();
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217 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
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218 plugin->SetRunMode(pluginmode.Data());
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219 plugin->SetUser("dainesea");
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220 plugin->SetNtestFiles(1);
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221 // Set versions of used packages
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222 plugin->SetAPIVersion("V2.4");
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223 plugin->SetROOTVersion("v5-23-02");
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224 plugin->SetAliROOTVersion("v4-17-00");
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225 // Declare input data to be processed.
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226 // Method 1: Create automatically XML collections using alien 'find' command.
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227 // Define production directory LFN
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228 //plugin->SetGridDataDir("/alice/cern.ch/user/r/rbala/newtrain/out_lhc08x/");
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229 plugin->SetGridDataDir("/alice/cern.ch/user/m/mgheata/analysisESD/output_train_default_28May2009_09h33/");
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230 // Set data search pattern
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231 plugin->SetDataPattern("AliAOD.root");
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232 plugin->SetFriendChainName("AliAOD.VertexingHF.root");
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233 // ...then add run numbers to be considered
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234 plugin->AddRunNumber(529007);
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236 //plugin->SetRunRange(529000,529007);
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237 // Method 2: Declare existing data files (raw collections, xml collections, root file)
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238 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
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239 // XML collections added via this method can be combined with the first method if
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240 // the content is compatible (using or not tags)
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241 //plugin->AddDataFile("/alice/cern.ch/user/r/rbala/newtrain/collection/collection_aod_lhc08w.xml");
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242 // plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
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243 // Define alien work directory where all files will be copied. Relative to alien $HOME.
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244 plugin->SetGridWorkingDir("work");
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245 // Declare alien output directory. Relative to working directory.
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246 plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
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247 // Declare the analysis source files names separated by blancs. To be compiled runtime
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248 // using ACLiC on the worker nodes.
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249 //plugin->SetAnalysisSource("$ALICE_ROOT/PWG3/vertexingHF/AliAnalysisTaskSECompareHF.cxx");
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250 // Declare all libraries (other than the default ones for the framework. These will be
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251 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
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252 plugin->SetAdditionalLibs("libPWG3vertexingHF.so libPWG3base.so libPWG3muon.so libPWG4PartCorrBase.so libPWG4PartCorrDep.so");
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255 plugin->EnablePackage("STEERBase.par");
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256 plugin->EnablePackage("ESD.par");
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257 plugin->EnablePackage("AOD.par");
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258 plugin->EnablePackage("ANALYSIS.par");
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259 plugin->EnablePackage("ANALYSISalice.par");
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260 plugin->EnablePackage("CORRFW.par");
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261 plugin->EnablePackage("PWG3base.par");
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262 plugin->EnablePackage("PWG3vertexingHF.par");
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263 plugin->EnablePackage("PWG3muon.par");
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264 plugin->EnablePackage("PWG4PartCorrBase.par");
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265 plugin->EnablePackage("PWG4PartCorrDep.par");
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267 // Declare the output file names separated by blancs.
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268 // (can be like: file.root or file.root@ALICE::Niham::File)
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269 plugin->SetOutputFiles("CmpHF.root");
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270 // Optionally define the files to be archived.
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271 // plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:*.root@ALICE::NIHAM::File");
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272 plugin->SetOutputArchive("log_archive.zip:stdout,stderr");
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273 // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
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274 plugin->SetAnalysisMacro("AnalysisHF.C");
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275 // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
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276 plugin->SetSplitMaxInputFileNumber(5);
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277 // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
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278 //plugin->SetMaxInitFailed(5);
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279 // Optionally resubmit threshold.
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280 //plugin->SetMasterResubmitThreshold(90);
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281 // Optionally set time to live (default 30000 sec)
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282 //plugin->SetTTL(20000);
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283 // Optionally set input format (default xml-single)
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284 plugin->SetInputFormat("xml-single");
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285 // Optionally modify the name of the generated JDL (default analysis.jdl)
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286 plugin->SetJDLName("TaskHF.jdl");
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287 // Optionally modify job price (default 1)
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288 //plugin->SetPrice(1);
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289 // Optionally modify split mode (default 'se')
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290 plugin->SetSplitMode("se");
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291 // Optionally set the preferred SE
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292 plugin->SetPreferedSE("ALICE::Legnaro::SE");
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