PWG4/macros/AnalysisTrainPWG4Jets.C

   1 //===================== ANALYSIS TRAIN =========================================
   2 // To use: copy this macro to your work directory, modify the global part to match
   3 // your needs, then run root.
   4 //    root[0] .L AnalysisTrain.C
   5 // Grid full mode as below (other modes: test, offline, submit, terminate)
   6 //    root[1] AnalysisTrainPWG-244Jets("grid", "full")
   7 // CAF mode (requires root v5-23-02 + aliroot v4-16-Rev08)
   8 //    root[2] AnalysisTrainPWG4Jets("proof")
   9 // Local mode requires AliESds.root or AliAOD.root in ./data directory
  10 //    root[3] AnalysisTrainPWG4Jets("local")
  11 // In proof and grid modes, a token is needed and sourcing the produced environment file.
  12 //
  13 // If 'saveTrain' flag is set, the train will generate a directory name and run
  14 // in this directory. A configuration file 'ConfigTrain.C' will be generated.
  15 // One can replay at any time the train via:
  16 //    root[1] AnalysisTrainPWG4Jets(ana_mode, plugin_mode, "train_default_<date>/ConfigTrain.C")
  17
  18 // For Usage with fastjet run in "offline" first and then "submit"
  19 // jdl and analysismacro are automatically patched after "offline" mode
  20
  21 // =============================================================================
  22 // ### General Steering variables
  23 // =============================================================================
  24 //== general setup variables
  25 TString     kTrainName         = "testAnalysis"; // *CHANGE ME* (no blancs or special characters)
  26 TString     kJobTag            = "PWG4 Jet Tasks analysis train configured"; // *CHANGE ME*
  27
  28 // Usage of par files ONLY in grid mode and ONLY if the code is not available
  29 // in the deployed AliRoot versions. Par file search path: local dir, if not there $ALICE_ROOT.
  30 // To refresh par files, remove the ones in the workdir, then do "make <target.par>" in
  31 // AliRoot.
  32 Bool_t      kUsePAR             = kFALSE;  // use par files for extra libs
  33 Bool_t      kUseCPAR            = kFALSE;  // use par files for common libs
  34 Bool_t      kFillAOD = kFALSE;  // switch of AOD filling for on the fly analysis
  35 Int_t       kSaveAOD = 8;        // Bit switch 1 = Full AOD 2 = Jet AOD , 4 = PartCorr, 8 = JCORRAN
  36 //== general input and output variables
  37
  38 Int_t       iAODanalysis       = 1;      // Analysis on input AOD's
  39 Int_t       iAODhandler        = 1;      // Analysis produces an AOD or dAOD's
  40 Int_t       iESDfilter         = 0;      // ESD to AOD filter (barrel + muon tracks)
  41 Int_t       iPhysicsSelection  = 1;      // ESD to AOD filter (barrel + muon tracks)
  42 Bool_t      useTender           = kFALSE; // use tender wagon
  43 Bool_t      kUseKinefilter     = kFALSE; // use Kinematics filter
  44 Bool_t      kUseMuonfilter     = kFALSE; // use Kinematics filter
  45 TString     kCommonOutputFileName = "PWG4_JetTasksOutput.root";
  46 TString     kCaloQAOutputFileName = "PWG4_CaloQAOutput.root";
  47
  48
  49 //== general process variables
  50
  51 // ### Other flags to steer the analysis
  52 //==============================================================================
  53 Bool_t      kSkipTerminate      = kTRUE; // Do not call Teminate
  54 Bool_t      kUseDate            = kFALSE; // use date in train name
  55 Bool_t      kUseDebug           = kTRUE; // activate debugging
  56 Int_t         kErrorIgnoreLevel = -1; // takes the errror print level from .rootrc
  57 // From TError.h:
  58 // const Int_t kUnset    =  -1;
  59 // const Int_t kPrint    =   0;
  60 // const Int_t kInfo     =   1000;
  61 // const Int_t kWarning  =   2000;
  62 // const Int_t kError    =   3000;
  63 // const Int_t kBreak    =   4000;
  64 // const Int_t kSysError =   5000;
  65 // const Int_t kFatal    =   6000;
  66 Int_t         kUseSysInfo         = 0; // activate debugging
  67 Long64_t kNumberOfEvents     = 1234567890; // number of events to process from the chain
  68 Bool_t      kUseMC              = kTRUE;  // use MC info
  69 Bool_t      kIsMC               = kTRUE;  // is MC info, if false it overwrites Use(AOD)MC
  70 Bool_t      kUseAODMC           = kTRUE;  // use MC infA
  71 Bool_t      kUseESDTags         = kFALSE; // use ESD tags for selection
  72 Bool_t      kUseTR              = kFALSE;  // use track references
  73 Bool_t      kUseAODTags         = kFALSE;  // use AOD tags
  74 Bool_t      kSaveTrain          = kFALSE;  // save train configuration as:
  75
  76
  77 // ### Analysis modules to be included. Some may not be yet fully implemented.
  78 //==============================================================================
  79 Int_t       iJETAN             = 1;      // Jet analysis (PWG4) // 1 write standard 2 write non-standard jets, 3 wrtie both
  80 Int_t       iDIJETAN           = 1;
  81 Int_t       iJETANLib          = 1;
  82 Int_t       iPWG1QASym         = 0;      // Eva's QA task compiled on the fly...
  83 Int_t       iPWG4JetTasks      = 0;      // all jet tasks flag for lib laoding
  84 Int_t       iPWG4JetServices   = 0;      // jet spectrum analysis
  85 Int_t       iPWG4JetSpectrum   = 0;      // jet spectrum analysis
  86 Int_t       iPWG4JCORRAN       = 0;      // JCORRAN module
  87 Int_t       iPWG4UE            = 0;      // Underlying Event analysis
  88 Int_t       iPWG4LeadingUE     = 0;      // Underlying Event analysis
  89 Int_t       iPWG4CorrectionsUE = 0;      // Underlying Event analysis
  90 Int_t       iPWG4TmpSourceSara = 0;      // Underlying Event analysis not in svn
  91 Int_t       iPWG4Fragmentation = 0;      // Official Fragmentation
  92 Int_t       iPWG4JetChem       = 0;      // Jet chemistry
  93 Int_t       iPWG4PtQAMC        = 0;      // Marta's QA tasks
  94 Int_t       iPWG4PtSpectra     = 0;      // Marta's QA tasks
  95 Int_t       iPWG4PtQATPC       = 0;      // Marta's QA tasks
  96 Int_t       iPWG4Cosmics     = 0;      // Marta's Cosmics Taks
  97 Int_t       iPWG4ThreeJets     = 0;      // Sona's thrust task
  98 Int_t       iPWG4QGSep     = 0;          // Sona's QG Separation task
  99 Int_t       iPWG4Minijet       = 0;      // Eva's Mini Jet Task cluster task
 100 Int_t       iPWG4KMeans        = 0;      // Andreas' KMeans task
 101 Int_t       iPWG4Cluster       = 0;      // CKB cluster task
 102 Int_t       iEMCUtilLibs       = 0;      // Flag to satisfy dependence on EMC utils
 103 Int_t       iPWG4PartCorrLibs  = 0;      // Gustavo's part corr analysis
 104 Int_t       iPWG4PartCorr      = 0;      // Gustavo's part corr analysis
 105 Int_t       iPWG4CaloQA        = 0;      // Gustavo's part corr analysis
 106 Int_t       iPWG4JetCorr       = 0;     // Paul's jet corr analysis
 107 Int_t       iPWG4Tagged        = 0;      // Gustavo's part corr analysis
 108 Int_t       iPWG4omega3pi      = 0;      // Omega to 3 pi analysis (PWG4)
 109 Int_t       iPWG4GammaConvLib     = 0;      // Gamma Conversio
 110 Int_t       iPWG4GammaConv     = 0;      // Gamma Conversio
 111 Int_t       iPWG4CaloConv     = 0;      // Gamma Conversio
 112 Int_t       kHighPtFilterMask  = 32;     // change depending on the used AOD Filter
 113 TString     kDeltaAODJetName   = "AliAOD.Jets.root";
 114 TString     kDeltaAODJCORRANName   = "AliAOD.JCORRAN.root";
 115 TString     kDeltaAODPartCorrName   = "deltaAODPartCorr.root";
 116
 117
 118 //==============================================================================
 119 // ### PROOF Steering varibales
 120 //==============================================================================
 121 //== proof setup variables
 122 TString     kProofCluster      = "alicecaf.cern.ch";
 123 Bool_t      kProofUseAFPAR     = kFALSE;  // use AF special par file
 124 TString     kProofAFversion          = "AF-v4-17";
 125 //== proof input and output variables
 126 TString     kProofDataSet      = "/COMMON/COMMON/LHC09a4_run8100X#/esdTree";
 127 Bool_t      kProofSaveToAlien   = kFALSE; // save proof outputs in AliEn train_[trainName]_ddMonthyyyy_time.C
 128 TString     kProofOutdir       = "";
 129 Bool_t      kProofClearPackages = kFALSE;
 130 Int_t       kProofEvents = 10000;
 131 Int_t       kProofOffset = 0;
 132 //== proof process variables
 133
 134
 135 //==============================================================================
 136 // ### Grid plugin Steering varibiables
 137 //==============================================================================
 138 //== grid plugin setup variables
 139 Bool_t      kPluginUse         = kTRUE;   // do not change
 140 Bool_t      kPluginUseProductionMode  = kFALSE;   // use the plugin in production mode
 141 TString     kPluginRootVersion       = "v5-27-06a-1";  // *CHANGE ME IF MORE RECENT IN GRID*
 142 TString     kPluginAliRootVersion    = "v4-19-15-AN";  // *CHANGE ME IF MORE RECENT IN GRID*
 143 Bool_t      kPluginMergeViaJDL       = kTRUE;  // merge via JDL
 144 Bool_t      kPluginFastReadOption   = kFALSE;  // use xrootd tweaks
 145 Bool_t      kPluginOverwriteMode    = kTRUE;  // overwrite existing collections
 146 Int_t       kPluginOutputToRunNumber = 1;     // write the output to subdirs named after run number
 147 // TString kPluginExecutableCommand = "root -b -q";
 148 TString     kPluginExecutableCommand = "source /Users/kleinb/setup_32bit_aliroot_trunk_clean_root_trunk.sh; alienroot -b -q ";
 149
 150 // == grid plugin input and output variables
 151 TString     kGridDatadir      = "/alice/sim/PDC_08b/LHC09a1/AOD/";
 152 Int_t         kGridMaxRunsFromList = 999999999;
 153 Int_t         kGridOffsetRunFromList = 0; // skip the first n runs from the list
 154 TString     kGridLocalRunList = "";
 155 TString     kGridOutdir       = ""; // AliEn output directory. If blank will become output_<kTrainName>
 156 TString     kGridDataSet      = ""; // sub working directory not to confuse different run xmls
 157 Int_t         kGridRunRange[2]       =  {0, -1}; // Set the run range
 158 TString     kGridRunPattern        = "%03d"; // important for leading zeroes!!
 159 TString     kGridPassPattern       = "";
 160 TString     kGridExtraFiles        = ""; // files that will be added to the input list in the JDL...
 161 Int_t         kGridMaxMergeFiles      = 12; // Number of files merged in a chunk grid run range
 162 TString     kGridMergeExclude       = "AliAOD.root"; // Files that should not be merged
 163 TString     kGridOutputStorages      = "disk=2"; // Make replicas on the storages
 164 // == grid process variables
 165 Int_t       kGridRunsPerMaster     = 100; // Number of runs per master job
 166 Int_t       kGridFilesPerJob       = 100; // Maximum number of files per job (gives size of AOD)
 167
 168 //==============================================================================
 169 // ### Local Steering variables
 170 //==============================================================================
 171 //== local setup variables
 172 //== local input and output variables
 173 TString     kLocalXMLDataset   = ""; // Change local xml dataset for local interactive analysis
 174 TString     kLocalDataList   = "local_deltaaod.txt"; // Change local xml dataset for local interactive analysis
 175 // == local process variables
 176
 177 TString kPluginMode;
 178
 179
 180 // Temporaries.
 181 TString anaPars = "";
 182 TString anaLibs = "";
 183 TString anaLibsExtra = "";
 184 TString anaSources = "";
 185 // Function signatures
 186 class AliAnalysisAlien;
 187
 188 //______________________________________________________________________________
 189 void AnalysisTrainPWG4Jets(const char *analysis_mode="local",
 190                            const char *plugin_mode="",
 191                            const char *config_file="",Int_t iOffset = 0,Int_t iTotal = 0)
 192 {
 193 // Main analysis train macro. If a configuration file is provided, all parameters
 194 // are taken from there but may be altered by CheckModuleFlags.
 195
 196   // these flag may be needed by the config file
 197   kPluginMode = plugin_mode;
 198
 199   if (strlen(config_file) && !LoadConfig(config_file)) return;
 200   if(iTotal>0)kGridMaxRunsFromList = iTotal; // overwrites the settings from config file
 201   if(iOffset)kGridOffsetRunFromList = iOffset;
 202   if(iOffset)kProofOffset = iOffset;
 203
 204
 205    TString smode(analysis_mode);
 206    smode.ToUpper();
 207    if (kSaveTrain)WriteConfig();
 208    // Check compatibility of selected modules
 209    CheckModuleFlags(smode);
 210    //     gROOT->ProcessLine(".trace");
 211
 212    printf("==================================================================\n");
 213    printf("===========    RUNNING ANALYSIS TRAIN %s IN %s MODE   ==========\n", kTrainName.Data(),smode.Data());
 214    printf("==================================================================\n");
 215                               printf("=  Configuring analysis train for:                               =\n");
 216    if (iAODanalysis) printf("=  AOD analysis                                                  =\n");
 217    else                     printf("=  ESD analysis                                                  =\n");
 218    if (iPhysicsSelection)   printf("=  Physics selection                                                =\n");
 219    if (useTender)   printf("=  Using tender                                                =\n");
 220    if (iESDfilter)   printf("=  ESD filter                                                    =\n");
 221    if (iJETAN)       printf("=  Jet analysis                                                  =\n");
 222    printf("==================================================================\n");
 223
 224    char *printMask = ":: %20s  %10d\n";
 225    printf(printMask,"Fill AOD",(UInt_t)kFillAOD);
 226    printf(printMask,"Save AOD", (UInt_t)kSaveAOD);
 227    printf(printMask,"MC truth", (UInt_t)kUseMC);
 228    printf(printMask,"KINE filter", (UInt_t)kUseKinefilter);
 229    printf(printMask,"track refs", (UInt_t)kUseTR);
 230    printf(printMask,"tags", (UInt_t)kUseESDTags);
 231    printf(printMask,"AOD tags", (UInt_t)kUseAODTags);
 232    printf(printMask,"debugging", (UInt_t)kUseDebug);
 233    printf(printMask,"PAR files", (UInt_t)kUsePAR);
 234    printf(printMask,"AliEn plugin", (UInt_t)kPluginUse);
 235    printf(printMask,"PWG1 QA sym", iPWG1QASym);
 236    printf(printMask,"PWG4 Source Sara",iPWG4TmpSourceSara);
 237    printf(printMask,"PWG4 Fragmentation",iPWG4Fragmentation);
 238    printf(printMask,"PWG4 Jet Chem",iPWG4JetChem);
 239    printf(printMask,"PWG4 Jet tasks",iPWG4JetTasks);
 240    printf(printMask,"PWG4 Jet Services",iPWG4JetServices);
 241    printf(printMask,"PWG4 Jet Spectrum",iPWG4JetSpectrum);
 242    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 243    printf(printMask,"PWG4 UE",iPWG4UE);
 244    printf(printMask,"PWG4 Leading UE",iPWG4LeadingUE);
 245    printf(printMask,"PWG4 Corrections UE",iPWG4CorrectionsUE);
 246    printf(printMask,"PWG4 Pt QA MC",iPWG4PtQAMC);
 247    printf(printMask,"PWG4 Pt Spectra",iPWG4PtSpectra);
 248    printf(printMask,"PWG4 Pt QA TPC",iPWG4PtQATPC);
 249    printf(printMask,"PWG4 Cosmics",iPWG4Cosmics);
 250    printf(printMask,"PWG4 Three Jets",iPWG4ThreeJets);
 251    printf(printMask,"PWG4 QGSep",iPWG4QGSep);
 252    printf(printMask,"PWG4 Minijet",iPWG4Minijet);
 253    printf(printMask,"PWG4 KMeans",iPWG4KMeans);
 254    printf(printMask,"PWG4 Cluster",iPWG4Cluster);
 255    printf(printMask,"PWG4 Part Corr",iPWG4PartCorr);
 256    printf(printMask,"PWG4 Calo QA",iPWG4CaloQA);
 257    printf(printMask,"PWG4 Jet Corr",iPWG4JetCorr);
 258    printf(printMask,"PWG4 JCORRAN",iPWG4JCORRAN);
 259    printf(printMask,"PWG4 Tagged",iPWG4Tagged);
 260    printf(printMask,"PWG4 omega to 3 pi ",iPWG4omega3pi);
 261    printf(printMask,"PWG4 Gamma Conv",iPWG4GammaConv);
 262    printf(printMask,"PWG4 Calo Conv",iPWG4CaloConv);
 263    printf(printMask,"HighPt FilterMask",kHighPtFilterMask);
 264
 265    //==========================================================================
 266    // Connect to back-end system
 267    if (!Connect(smode)) {
 268       ::Error("AnalysisTrain", "Could not connect to %s back-end", analysis_mode);
 269       return;
 270    }
 271
 272    // Load common libraries and set include path
 273    if (!LoadCommonLibraries(smode)) {
 274       ::Error("AnalysisTrain", "Could not load common libraries");
 275       return;
 276    }
 277
 278
 279
 280    // Make the analysis manager and connect event handlers
 281    AliAnalysisManager *mgr  = new AliAnalysisManager("PWG4Train", "pwg4 mini train");
 282    if (kCommonOutputFileName.Length()>0)mgr->SetCommonFileName(kCommonOutputFileName.Data());
 283    if (kProofSaveToAlien) mgr->SetSpecialOutputLocation(kProofOutdir);
 284    mgr->SetNSysInfo(0);
 285    if (!strcmp(plugin_mode, "test")) mgr->SetNSysInfo(1);
 286    if (kUseSysInfo)mgr->SetNSysInfo(kUseSysInfo);
 287    mgr->SetSkipTerminate(kSkipTerminate);
 288
 289    // Load analysis specific libraries
 290    if (!LoadAnalysisLibraries(smode)) {
 291       ::Error("AnalysisTrain", "Could not load analysis libraries");
 292      return;
 293    }
 294
 295    // Create input handler (input container created automatically)
 296    if (iAODanalysis) {
 297    // AOD input handler
 298       AliAODInputHandler *aodH = new AliAODInputHandler();
 299       mgr->SetInputEventHandler(aodH);
 300       if (iPWG4JetTasks) aodH->AddFriend(Form("deltas/%s",kDeltaAODJetName.Data()));
 301       if (iPWG4PartCorr) aodH->AddFriend(Form("deltas/%s"kDeltaAODJetName.Data()));
 302    } else {
 303    // ESD input handler
 304       AliESDInputHandler *esdHandler = new AliESDInputHandler();
 305       if (kUseESDTags) esdHandler->SetReadTags();
 306       esdHandler->SetReadFriends(kFALSE);
 307       mgr->SetInputEventHandler(esdHandler);
 308       //      if(iPWG4PtQATPC&& !kTrainName.Contains("pass5"))esdHandler->SetActiveBranches("ESDfriend");
 309
 310    }
 311
 312    // Monte Carlo handler
 313    if (kUseMC && !iAODanalysis) {
 314       AliMCEventHandler* mcHandler = new AliMCEventHandler();
 315       mgr->SetMCtruthEventHandler(mcHandler);
 316       mcHandler->SetReadTR(kUseTR);
 317    }
 318    // AOD output container, created automatically when setting an AOD handler
 319    if (iAODhandler) {
 320       // AOD output handler
 321       AliAODHandler* aodHandler   = new AliAODHandler();
 322       aodHandler->SetOutputFileName("AliAOD.root");
 323       aodHandler->SetFillAODforRun(kFillAOD);
 324
 325       mgr->SetOutputEventHandler(aodHandler);
 326       //
 327       if (iAODanalysis) {
 328
 329         //         aodHandler->SetCreateNonStandardAOD();
 330         //      if (iJETAN)aodHandler->SetOutputFileName(kDeltaAODJetName.Data());
 331       }
 332       AliAnalysisDataContainer * cout_aod = mgr->GetCommonOutputContainer();
 333       cout_aod->SetSpecialOutput();
 334    }
 335    // Debugging if needed
 336
 337    if (kUseDebug){
 338      mgr->SetDebugLevel(3);
 339    }
 340    if(kUseSysInfo>0){
 341      mgr->RegisterExtraFile("syswatch.root");
 342      if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 343      kGridMergeExclude += "syswatch.root";
 344    }
 345    else{
 346      AliLog::SetGlobalLogLevel(AliLog::kError);
 347    }
 348
 349
 350    //==========================================================================
 351    // Create the chain. In this example it is created only from ALIEN files but
 352    // can be done to work in batch or grid mode as well.
 353    TChain *chain = CreateChain(smode, plugin_mode);
 354
 355    //==========================================================================
 356    // Load the tasks configuration macros for all wagons. These files are supposed now to be
 357    // in the current workdir, but in AliEn they will be in the file catalog,
 358    // mapped from AliRoot and pecified in the jdl input list.
 359
 360    // For now connection to top input container and common AOD output container
 361    // is done in this macro, but in future these containers will be connected
 362    // from each task configuration macro.
 363
 364    //
 365    // Tender and supplies. Needs to be called for every event.
 366    //
 367    if (useTender) {
 368       gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/TenderSupplies/AddTaskTender.C");
 369       AliAnalysisTaskSE *tender = AddTaskTender(kTRUE);
 370       //      tender->SelectCollisionCandidates();
 371       tender->SetDebugLevel(2);
 372    }
 373
 374
 375
 376    if(iPhysicsSelection && !iAODanalysis){
 377      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
 378      AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(kIsMC,kTRUE,kTRUE); // last flag also adds information on
 379    }
 380
 381    if (iESDfilter && !iAODanalysis) {
 382       //  ESD filter task configuration.
 383       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskESDFilterPWG4Train.C");
 384       AliAnalysisTaskESDfilter *taskesdfilter = AddTaskESDFilter(kUseKinefilter,kUseMuonfilter);
 385       taskesdfilter->SetEnableFillAOD(kFALSE);
 386       if(kIsMC){
 387         mgr->RegisterExtraFile("pyxsec_hists.root");
 388         if(kGridMergeExclude.Length())kGridMergeExclude += " ";
 389         kGridMergeExclude += "pyxsec_hists.root";
 390
 391       }
 392    }
 393
 394    // AOD tags
 395    if (kUseAODTags) {
 396       AliAnalysisTaskTagCreator* tagTask = new AliAnalysisTaskTagCreator("AOD Tag Creator");
 397       mgr->AddTask(tagTask);
 398       AliAnalysisDataContainer *coutTags = mgr->CreateContainer("cTag",  TTree::Class(),
 399                                            AliAnalysisManager::kOutputContainer, "AOD.tag.root");
 400       mgr->ConnectInput (tagTask, 0, mgr->GetCommonInputContainer());
 401       mgr->ConnectOutput(tagTask, 1, coutTags);
 402    }
 403
 404     // Jet analysis
 405    if (iJETAN) {
 406       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJets.C");
 407       AliAnalysisTaskJets *taskjets = 0;
 408       if(iJETAN&1)taskjets = AddTaskJets(kHighPtFilterMask);
 409       if(iJETAN&2){
 410         UInt_t selection = 0;
 411         if(!kFillAOD){
 412           selection = 0xffffff&~(1<<13)&~(1<<5)&~(1<<6); // switch OFF DA and all R = 0.7 to save processing time
 413           selection &= ~(1<<1)&~(1<<2)&~(1<<4)&~(1<<6)&~(1<<8)&~(1<<10)&~(1<<12);
 414         }
 415         else {
 416           selection = 0xffffff&~(1<<13)&~(1<<5)&~(1<<6); // switch OFF DA and all R = 0.7 to save processing time;
 417           selection &= ~(1<<1)&~(1<<2)&~(1<<4)&~(1<<6)&~(1<<8)&~(1<<10)&~(1<<12);
 418         }
 419         AddTaskJetsDelta(kDeltaAODJetName.Data(),kHighPtFilterMask,kUseAODMC,selection);
 420         AddTaskJets("AOD","FASTKT",0.2,kHighPtFilterMask);
 421       }
 422       if (!taskjets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 423    }
 424
 425    if(iPWG4Cluster){
 426      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCluster.C");
 427      AliAnalysisTaskJetCluster *taskCl = 0;
 428      if(iPWG4Cluster&1){
 429        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"KT",0.4,0,1); // this one is for the background random jets
 430        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"KT",0.6,0,1); // this one is for the background jets
 431        taskCl = AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"ANTIKT",0.4,0,1); // this one is for the background random jets
 432
 433        if(kUseAODMC){
 434          taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelection,"KT",0.6,0,1); // this one is for the background jets
 435          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelection,"KT",0.6,0,1); // this one is for the background jets
 436          taskCl = AddTaskJetCluster("AODMC","",kHighPtFilterMask,iPhysicsSelection,"KT",0.4,0,1); // this one is for the background random jets
 437          taskCl = AddTaskJetCluster("AODMC2","",kHighPtFilterMask,iPhysicsSelection,"KT",0.4,0,1); // this one is for the background random jets
 438        }
 439
 440        if (!taskCl) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCluster cannot run for this train conditions - EXCLUDED");
 441      }
 442      if(iPWG4Cluster&2){
 443        UInt_t selection = 0;
 444        if(!iAODanalysis) selection = 0xffffff;
 445        else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
 446        selection&=~(1<<4); // exluded R = .04 already the dafault
 447        selection&=~(1<<6); // exluded R = .04 already the dafault
 448        AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelection,"KT",selection);
 449      }
 450      if(iPWG4Cluster&4){
 451        UInt_t selection = 0;
 452        if(!iAODanalysis){
 453          selection = 0xffffff;
 454          selection &= ~(1<<1)&~(1<<3)&~(1<<5)&~(1<<7)&~(1<<9);
 455        }
 456        else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
 457        selection&=~(1<<4); // exluded R = .04 already the dafault
 458        selection&=~(1<<6); // exluded R = .04 already the dafault
 459        AddTaskJetClusterDelta(kHighPtFilterMask,kUseAODMC,iPhysicsSelection,"ANTIKT",selection);
 460        //       AddTaskJetCluster("AOD","",kHighPtFilterMask,iPhysicsSelection,"ANTIKT",0.4,0,1);
 461
 462      }
 463    }
 464
 465    if (iDIJETAN) {
 466       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskDiJets.C");
 467       AliAnalysisTaskDiJets *taskdijets = 0;
 468       if(iDIJETAN&1)taskdijets = AddTaskDiJets();
 469       if (!taskdijets) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJets cannot run for this train conditions - EXCLUDED");
 470       if(iDIJETAN&2){
 471         taskdijets = AddTaskDiJets("jetsAOD_CDF07");
 472         taskdijets = AddTaskDiJets("jetsAOD_DA07");
 473         taskdijets = AddTaskDiJets("jetsAOD_FASTJET07");
 474         taskdijets = AddTaskDiJets("jetsAOD_FASTKT07");
 475         taskdijets = AddTaskDiJets("jetsAOD_SISCONE07");
 476         taskdijets = AddTaskDiJets("jetsAOD_UA107");
 477       }
 478    }
 479
 480    if(iPWG1QASym){
 481      gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
 482      AliAnalysisTaskQASym *taskQASym = AddTaskQAsym(-1);
 483      if (!taskQASym) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQASym cannot run for this train conditions - EXCLUDED");
 484    }
 485
 486
 487
 488    if(iPWG4TmpSourceSara){
 489      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskEta.C");
 490      AliAnalysisTaskEta *taskEta = AddTaskEta();
 491      if (!taskEta) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskEta cannot run for this train conditions - EXCLUDED");
 492    }
 493
 494    if(iPWG4Fragmentation){
 495      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskFragmentationFunction.C");
 496        AliAnalysisTaskFragmentationFunction *taskFrag = 0;
 497      if(kUseAODMC){
 498        taskFrag = AddTaskFragmentationFunction(1<<1,kHighPtFilterMask);
 499        taskFrag = AddTaskFragmentationFunction(1<<2,kHighPtFilterMask);
 500        //       taskFrag = AddTaskFragmentationFunction(1<<3,kHighPtFilterMask);
 501        taskFrag = AddTaskFragmentationFunction(1<<5,kHighPtFilterMask);
 502        taskFrag = AddTaskFragmentationFunction(1<<11);  // w/o acceptance cuts
 503        taskFrag =  AddTaskFragmentationFunction(1<<12);  // with acceptance cuts
 504        // anti-kt
 505        taskFrag = AddTaskFragmentationFunction(1<<21);  // w/o acceptance cuts
 506        taskFrag = AddTaskFragmentationFunction(1<<22);  // with acceptance cuts
 507
 508      }
 509      else{
 510        taskFrag = AddTaskFragmentationFunction(1<<0,kHighPtFilterMask);
 511        taskFrag = AddTaskFragmentationFunction(1<<10,kHighPtFilterMask);
 512        taskFrag = AddTaskFragmentationFunction(1<<20,kHighPtFilterMask);
 513      }
 514
 515      if (!taskFrag) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskFragmentationFunction cannot run for this train conditions - EXCLUDED");
 516    }
 517
 518
 519    if(iPWG4JetChem){
 520      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetChem.C");
 521      AliAnalysisTask *taskChem = AddTaskJetChem();
 522      if (!taskChem) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetChem cannot run for this train conditions - EXCLUDED");
 523    }
 524
 525
 526    if(iPWG4JetServices){
 527      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetServices.C");
 528      AliAnalysisTaskJetServices *taskjetServ = 0;
 529      taskjetServ = AddTaskJetServices();
 530      if (!taskjetServ) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetServices cannot run for this train conditions - EXCLUDED");
 531      if(kGridRunRange[0]>0)taskjetServ->SetRunRange(kGridRunRange[0],kGridRunRange[1]);
 532      else taskjetServ->SetRunRange(110000,160000);
 533      taskjetServ->SetMCData(kIsMC);
 534      taskjetServ->SetUsePhysicsSelection((Bool_t)iPhysicsSelection);
 535      taskjetServ->SetDebugLevel(0);
 536    }
 537
 538    if(iPWG4JetSpectrum){
 539      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetSpectrum2.C");
 540      AliAnalysisTaskJetSpectrum2 *taskjetSpectrum = 0;
 541      if(iPWG4JetSpectrum&1){
 542        taskjetSpectrum = AddTaskJetSpectrum2("jets","","",kHighPtFilterMask,iPhysicsSelection);
 543        if(!iAODanalysis){
 544          //      taskjetSpectrum = AddTaskJetSpectrum2("jets","tracks32",32,iPhysicsSelection);       // tmp hack to give it a different name
 545          //      taskjetSpectrum = AddTaskJetSpectrum2("jets","64",64,iPhysicsSelection);
 546
 547          taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","clustersAOD_ANTIKT04","",kHighPtFilterMask,iPhysicsSelection);
 548
 549          if(kIsMC){
 550
 551            UInt_t eventSelection =  AliAnalysisHelperJetTasks::kIsPileUp|AliAnalysisHelperJetTasks::kVertexIn;
 552            if(iPhysicsSelection)eventSelection |=  AliAnalysisHelperJetTasks::kPhysicsSelection;
 553            taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
 554            taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC2_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
 555
 556            eventSelection =  AliAnalysisHelperJetTasks::kIsCosmic|AliAnalysisHelperJetTasks::kVertexIn;
 557            if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
 558            taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
 559
 560            eventSelection =  AliAnalysisHelperJetTasks::kNone;
 561            taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC2_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
 562            taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","jetsAODMC_FASTJET04","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
 563
 564          }
 565          else{
 566            UInt_t eventSelection =  AliAnalysisHelperJetTasks::kIsPileUp|AliAnalysisHelperJetTasks::kVertexIn;
 567            if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
 568            taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
 569
 570            eventSelection =  AliAnalysisHelperJetTasks::kIsCosmic|AliAnalysisHelperJetTasks::kVertexIn;
 571            if(iPhysicsSelection)eventSelection |= AliAnalysisHelperJetTasks::kPhysicsSelection;
 572            taskjetSpectrum = AddTaskJetSpectrum2("jetsAOD_FASTJET04","","",kHighPtFilterMask,iPhysicsSelection,eventSelection);
 573          }
 574        }
 575        if (!taskjetSpectrum) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskJetSpectrum2 cannot run for this train conditions - EXCLUDED");
 576        //       taskjetSpectrum->SetDebugLevel(1);
 577      }
 578
 579      if(iPWG4JetSpectrum&2){
 580        UInt_t selection = 0;
 581        if(!iAODanalysis){
 582          selection = 0xffffff;
 583          // switch off 07 radii
 584          selection &= ~(1<<6)&~(1<<11)&~(1<<12)&~(1<<13)&~(1<<14);
 585        }
 586        else selection = 1<<0|1<<1|1<<2|1<<3|1<<4|1<<5|1<<7|1<<8|1<<9;
 587        AddTaskJetSpectrum2Delta(kHighPtFilterMask,kUseAODMC,iPhysicsSelection,selection,0,kTRUE);
 588      }
 589    }
 590    if(iPWG4JCORRAN){
 591      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJCORRANTask.C");
 592      AliJCORRANTask* corran = AddTaskJCORRAN(kDeltaAODJCORRANName.Data(),0);
 593      if(!corran)::Warning("AnalysisTrainPWG4Jets", "AliJCORRANTask cannot run for this train conditions - EXCLUDED");
 594      else{
 595        if(kDeltaAODJCORRANName.Length()>0)mgr->RegisterExtraFile(kDeltaAODJCORRANName.Data());
 596      }
 597    }
 598
 599    if(iPWG4UE){
 600      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskUE.C");
 601      AliAnalysisTaskUE *taskUE = 0;
 602      if(iPWG4UE&1)taskUE = AddTaskUE();
 603      if(iPWG4UE&2){
 604        taskUE  =AddTaskUE("jetsAOD_CDF04","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
 605        //       taskUE  =AddTaskUE("jetsAOD_CDF07","CDF", "LJ", "TRANSV","MSP");
 606        taskUE  =AddTaskUE("jetsAOD_SISCONE04","CDF", "LJ", "TRANSV","MSP");
 607        //       taskUE  =AddTaskUE("jetsAOD_SISCONE07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
 608        taskUE  =AddTaskUE("jetsAOD_ICDF","CDF","LJ","TRANSV","MSP");
 609        taskUE  =AddTaskUE("jetsAOD_FASTKT04","CDF", "LJ", "TRANSV","MSP");
 610        //       taskUE  =AddTaskUE("jetsAOD_FASTKT07","CDF", "LJ", "TRANSV","MSP"); //finder not yet in train
 611        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta05", "TRANSV","MSP");
 612        taskUE  =AddTaskUE("jetsAOD_NONE","CDF", "MP_eta09", "TRANSV","MSP");
 613      }
 614
 615      if (!taskUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskUE cannot run for this train conditions - EXCLUDED");
 616    }
 617
 618    if(iPWG4LeadingUE){
 619      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskLeadingTrackUE.C");
 620      AliAnalysisTaskLeadingTrackUE *taskLeadingUE = AddTaskLeadingTrackUE(kUseMC);
 621      if (!taskLeadingUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTasLeadingTrackkUE cannot run for this train conditions - EXCLUDED");
 622      //     taskLeadingUE->SetFilterBit(64);
 623    }
 624
 625
 626    if(iPWG4CorrectionsUE){
 627      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCorrectionsUE.C");
 628      AliAnalysisTaskCorrectionsUE *taskCorrectionsUE = 0;
 629      if(iPWG4CorrectionsUE&1)taskCorrectionsUE = AddTaskCorrectionsUE("jetsAOD_NONE","CDF","MP_eta05","TRANSV","MSP",kFALSE);
 630      if (!taskCorrectionsUE) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskCorrectionsUE cannot run for this train conditions - EXCLUDED");
 631    }
 632
 633    if(iPWG4ThreeJets){
 634      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskThreeJets.C");
 635      AliAnalysisTaskThreeJets *taskThree = AddTaskThreeJets();
 636      if(!taskThree)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskThreets cannot run for this train conditions - EXCLUDED");
 637    }
 638    if(iPWG4QGSep){
 639      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskQGSep.C");
 640      AliAnalysisTaskQGSep *taskQGSep = AddTaskQGSep(kUseMC,iAODanalysis);
 641      if(!taskQGSep)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQGSep cannot run for this train conditions - EXCLUDED");
 642    }
 643
 644
 645    if(iPWG4Minijet){
 646      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskMinijet.C");
 647      AliAnalysisTaskMinijet *taskMini = AddTaskMinijet(-1,"esd",kUseMC,kGridDataSet);
 648      // if we ha highmult trigger add another task
 649      if(!taskMini)::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskMinjet cannot run for this train conditions - EXCLUDED");
 650    }
 651
 652
 653    if(iPWG4PtQAMC){
 654      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQAMC.C");
 655      AliPWG4HighPtQAMC *taskQAMC = 0;
 656      if(kUseMC){
 657        if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),0);
 658        if(iPWG4PtQAMC&1)taskQAMC = AddTaskPWG4HighPtQAMC(kGridDataSet.Data(),1);
 659      }
 660      if (!taskQAMC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQAMC cannot run for this train conditions - EXCLUDED");
 661    }
 662
 663    if(iPWG4PtQATPC){
 664      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtQATPConly.C");
 665      AliPWG4HighPtQATPConly *taskQATPC = 0;
 666      if(iPWG4PtQATPC&1)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),1);
 667      if(iPWG4PtQATPC&2)taskQATPC = AddTaskPWG4HighPtQATPConly(kGridDataSet.Data(),2);
 668
 669  if (!taskQATPC) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskQATPC cannot run for this train conditions - EXCLUDED");
 670    }
 671
 672    if(iPWG4Cosmics){
 673      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4CosmicCandidates.C");
 674
 675      AliPWG4CosmicCandidates *taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(0);
 676      taskPWG4CosmicCandidates = AddTaskPWG4CosmicCandidates(1);
 677
 678      if (!taskPWG4CosmicCandidates) ::Warning("AnalysisTrainPWG4Jets", "AddTaskPWG4CosmicCandidates cannot run for this train conditions - EXCLUDED");
 679    }
 680
 681
 682    if(iPWG4PtSpectra){
 683      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPWG4HighPtSpectra.C");
 684      AliPWG4HighPtSpectra *taskPtSpectra = AddTaskPWG4HighPtSpectra(kGridDataSet.Data());
 685      if (!taskPtSpectra) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskPtSpectra cannot run for this train conditions - EXCLUDED");
 686    }
 687    if(iPWG4KMeans){
 688      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskKMeans.C");
 689      AliAnalysisTaskKMeans *taskKMeans = AddTaskKMeans();
 690      if (!taskKMeans) ::Warning("AnalysisTrainPWG4Jets", "AliAnalysisTaskKMenans cannot run for this train conditions - EXCLUDED");
 691    }
 692
 693    if(iPWG4PartCorr){
 694      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskPartCorr.C");
 695      AliAnalysisTaskParticleCorrelation *taskpartcorrPHOS = AddTaskPartCorr("AOD", "PHOS",kFALSE,kIsMC);
 696      if (!taskpartcorrPHOS) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation PHOS cannot run for this train conditions - EXCLUDED");
 697      AliAnalysisTaskParticleCorrelation *taskpartcorrEMCAL = AddTaskPartCorr("AOD", "EMCAL",kFALSE,kIsMC);
 698      if (!taskpartcorrEMCAL) ::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation EMCAL cannot run for this train conditions - EXCLUDED");
 699      if(kDeltaAODPartCorrName.Length()>0)mgr->RegisterExtraFile(kDeltaAODPartCorrName.Data());
 700    }
 701
 702    if(iPWG4CaloQA){
 703      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
 704      AliAnalysisTaskParticleCorrelation *taskcaloQA =  AddTaskCalorimeterQA("ESD",kFALSE,kIsMC,kCaloQAOutputFileName.Data());
 705      if(!taskcaloQA)::Warning("AnalysisTrainNew", "AliAnalysisTaskParticleCorrelation QA cannot run - EXCLUDED");
 706      //  if(kCaloQAOutputFileName.Length()>0)mgr->RegisterExtraFile(kCaloQAOutputFileName.Data());
 707    }
 708
 709    if(iPWG4JetCorr){
 710      //     using namespace JetCorrelHD;
 711      TString cdir = gSystem->WorkingDirectory();
 712      gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
 713      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskJetCorrel.C");
 714      AliAnalysisTaskJetCorrel *taskjetcorr = AddTaskJetCorrel();
 715      gSystem->ChangeDirectory(cdir);
 716      if (!taskjetcorr) ::Warning("AnalysisTrainNew", "AliAnalysisTaskJetCorrel  cannot run for this train conditions - EXCLUDED");
 717    }
 718
 719    if(iPWG4Tagged){
 720      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskTaggedPhotons.C");
 721      AliAnalysisTaskTaggedPhotons * taskTagged = AddTaskTaggedPhotons(kFALSE); // EMCAL
 722      taskTagged = AddTaskTaggedPhotons(kTRUE); // PHOS
 723      if (!taskTagged) ::Warning("AnalysisTrainNew", "AliAnalysisTaskTaggedPhotons  cannot run for this train conditions - EXCLUDED");
 724    }
 725    if (iPWG4omega3pi) {
 726      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskomega3pi.C");
 727      AliAnalysisTaskOmegaPi0PiPi *taskomega3pi = AddTaskomega3pi();
 728      if (!taskomega3pi) ::Warning("AnalysisTrainNew", "AliAnalysisTaskomega3pi cannot run\
 729  for these train conditions - EXCLUDED");
 730    }
 731
 732    // PWG4 gamma conversion analysis
 733    if (iPWG4GammaConv) {
 734       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskGammaConversion.C");
 735       TString cdir = gSystem->WorkingDirectory();
 736       gSystem->ChangeDirectory(gSystem->ExpandPathName("$ALICE_ROOT/PWG4/macros/"));
 737       //      TString gcArguments = "-run-on-train -run-jet -run-chic -run-neutralmeson -run-cf";
 738       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
 739       //      TString gcArguments = "-run-on-train -run-jet -run-neutralmeson -run-cf -use-own-xyz";
 740       TString gcArguments = "-run-on-train -run-jet -run-omega-meson -use-own-xyz -run-neutralmeson -no-aod";
 741       //      TString kGCAnalysisCutSelectionId="9003562000100310";
 742       //      TString kGCAnalysisCutSelectionId="9003562000100312";
 743       //      gcArguments.Append(Form(" -set-cut-selection %s ",kGCAnalysisCutSelectionId.Data()));
 744       if(!kIsMC)gcArguments += " -mc-off";
 745       AliAnalysisTaskGammaConversion * taskGammaConversion = AddTaskGammaConversion(gcArguments,mgr->GetCommonInputContainer());
 746       gSystem->ChangeDirectory(cdir);
 747       taskGammaConversion->SelectCollisionCandidates();
 748       if (!taskGammaConversion) ::Warning("AnalysisTrainNew", "AliAnalysisTaskGammaConversion cannot run for these train conditions - EXCLUDED");
 749    }
 750
 751    if (iPWG4CaloConv) {
 752       gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/AddTaskCaloConv.C");
 753       AliAnalysisTaskCaloConv * taskCaloConv = AddTaskCaloConv();
 754       if (!taskCaloConv) ::Warning("AnalysisTrainNew", "AliAnalysisTaskCaloConv cannot run for these train conditions - EXCLUDED");
 755    }
 756
 757
 758
 759    //==========================================================================
 760    // FOR THE REST OF THE TASKS THE MACRO AddTaskXXX() is not yet implemented/
 761    // Run the analysis
 762    //
 763    if (kPluginUse) {
 764       AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
 765       AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
 766    }
 767
 768    if (mgr->InitAnalysis()) {
 769      mgr->PrintStatus();
 770      // if (kSaveTrain || strlen(config_file)) gSystem->ChangeDirectory(kTrainName);
 771      if (!strcmp(plugin_mode,"submit")&&smode=="GRID"){
 772        TString alien_workdir = gGrid->GetHomeDirectory();
 773        if (iAODanalysis) alien_workdir += "analysisAOD";
 774        else              alien_workdir += "analysisESD";
 775        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
 776        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
 777        printf("=== AnalysisTrainPWG4Jets:: Registering jdl in the work directory alien://%s/%s, should be done by the manager! ===\n",
 778               alien_workdir.Data(),gridhandler->GetGridOutputDir());
 779
 780        TString dest;
 781        dest = Form("%s/%s/%s.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
 782        if(AliAnalysisAlien::FileExists(dest.Data())){
 783          //      Printf("%s exist on grid removing...",dest.Data());
 784          //      gGrid->Rm(dest.Data());
 785        }
 786        TFile::Cp(Form("file:%s.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
 787
 788
 789        TString dest;
 790        dest = Form("%s/%s/%s_merge.jdl",alien_workdir.Data(),gridhandler->GetGridOutputDir(),kTrainName.Data());
 791        if(AliAnalysisAlien::FileExists(dest.Data())){
 792          //      Printf("%s exist on grid removing...",dest.Data());
 793          //      gGrid->Rm(dest.Data());
 794        }
 795        TFile::Cp(Form("file:%s_merge.jdl",kTrainName.Data()),Form("alien://%s",dest.Data()));
 796
 797
 798        dest = Form("%s/rootfiles/STEER/LQ1dRef_v1.root",gGrid->GetHomeDirectory());
 799        if(AliAnalysisAlien::FileExists(dest.Data())){
 800          Printf("%s exist on grid removing...",dest.Data());
 801          gGrid->Rm(dest.Data());
 802        }
 803        TFile::Cp(Form("file:%s/STEER/LQ1dRef_v1.root",
 804                       gSystem->ExpandPathName("$ALICE_ROOT")),Form("alien://%s",dest.Data()));
 805      }
 806      AliLog::SetGlobalLogLevel(AliLog::kError);
 807      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
 808        TFile * fM = TFile::Open("manager_local.root","RECREATE");
 809        mgr->Write();
 810        fM->Close();
 811      }
 812
 813      // grmpf, aliroot error handler overwrites root
 814      gErrorIgnoreLevel = kErrorIgnoreLevel;
 815      if(gErrorIgnoreLevel>3000) AliLog::SetGlobalLogLevel(AliLog::kFatal);
 816      StartAnalysis(smode, chain);
 817      if((kUseSysInfo>0&&smode=="LOCAL")||!strcmp(plugin_mode, "test")){
 818        for(int i = 0;i < mgr->GetTopTasks()->GetEntries();i++){
 819          mgr->ProfileTask(i);
 820        }
 821      }
 822      if (!strcmp(plugin_mode, "offline")&&smode=="GRID"){
 823        // Offline mode path files
 824        //       PatchJDL();
 825        PatchAnalysisMacro();
 826      }
 827
 828      if (kSaveTrain && smode=="GRID") {
 829        AliAnalysisAlien *gridhandler = (AliAnalysisAlien*)mgr->GetGridHandler();
 830        TString alien_workdir = gGrid->GetHomeDirectory();
 831        if (iAODanalysis) alien_workdir += "analysisAOD";
 832        else              alien_workdir += "analysisESD";
 833        if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
 834        //     kGridOutdir = gridhandler->GetGridOutputDir();
 835        printf("=== Registering ConfigTrain.C in the work directory <%s> ===\n",
 836                 alien_workdir.Data());
 837        if (AliAnalysisAlien::FileExists(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data())))
 838          gGrid->Rm(Form("%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
 839        if (strcmp(plugin_mode, "test"))
 840          TFile::Cp(Form("file:%sConfig.C",kTrainName.Data()), Form("alien://%s/%sConfig.C", alien_workdir.Data(), kTrainName.Data()));
 841      }
 842    }
 843 }
 844
 845 //______________________________________________________________________________
 846 void StartAnalysis(const char *mode, TChain *chain) {
 847 // Start analysis.
 848    Int_t imode = -1;
 849    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
 850    if (!strcmp(mode, "LOCAL")) imode = 0;
 851    if (!strcmp(mode, "PROOF")) imode = 1;
 852    if (!strcmp(mode, "GRID"))  imode = 2;
 853    switch (imode) {
 854       case 0:
 855          if (!chain) {
 856             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
 857             return;
 858          }
 859          mgr->StartAnalysis(mode, chain,kNumberOfEvents);
 860          return;
 861       case 1:
 862          if (!kProofDataSet.Length()) {
 863             ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "kProofDataSet is empty");
 864             return;
 865          }
 866          mgr->StartAnalysis(mode, kProofDataSet, kProofEvents,kProofOffset);
 867          return;
 868       case 2:
 869          if (kPluginUse) {
 870             if (!mgr->GetGridHandler()) {
 871                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Grid plugin not initialized");
 872                return;
 873             }
 874             mgr->StartAnalysis("grid",chain,kNumberOfEvents);
 875          } else {
 876             if (!chain) {
 877                ::Error("AnalysisTrainPWG4Jets.C::StartAnalysis", "Cannot create the chain");
 878                return;
 879             }
 880             mgr->StartAnalysis(mode, chain);
 881             mgr->StartAnalysis(mode, chain,kNumberOfEvents);
 882          }
 883          return;
 884    }
 885 }
 886
 887 //______________________________________________________________________________
 888 void CheckModuleFlags(const char *mode) {
 889 // Checks selected modules and insure compatibility
 890    Int_t imode = -1;
 891    if (!strcmp(mode, "LOCAL")) imode = 0;
 892    if (!strcmp(mode, "PROOF")) imode = 1;
 893    if (!strcmp(mode, "GRID"))  imode = 2;
 894
 895
 896    if (kUseCPAR) {
 897      kPluginAliRootVersion    = ""; // NO aliroot if we use CPAR
 898    }
 899
 900    if (imode==1) {
 901       if (!kUsePAR) {
 902          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PAR files enabled due to PROOF analysis");
 903          kUsePAR = kTRUE;
 904       }
 905    }
 906    if (imode != 2) {
 907       ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AliEn plugin disabled since not in GRID mode");
 908       kPluginUse = kFALSE;
 909    }
 910
 911
 912    if(!kIsMC){
 913      // switch off anthin related to MC
 914      kUseMC = 0;
 915      kUseAODMC = 0;
 916      kUseTR = kFALSE;
 917    }
 918
 919    if (iAODanalysis) {
 920    // AOD analysis
 921       if (kUseMC)
 922          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "MC usage disabled in analysis on AOD's");
 923       if (kUseAODTags)
 924          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "AOD tags usage disabled in analysis on AOD's");
 925       kUseMC = kFALSE;
 926       kUseTR = kFALSE;
 927       kUseAODTags = kFALSE;
 928       if (iESDfilter)
 929          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "ESD filter disabled in analysis on AOD's");
 930       iESDfilter   = 0;
 931       if (iPhysicsSelection)
 932          ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "Physics Selection disabled in analysis on AOD's");
 933       iPhysicsSelection   = 0;
 934       if (!iAODhandler) {
 935          if (iJETAN)
 936             ::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "JETAN disabled in analysis on AOD's without AOD handler");
 937          iJETAN = 0;
 938          iDIJETAN = 0;
 939       }
 940       // Disable tasks that do not work yet on AOD data
 941       if(iPWG4JCORRAN)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 JCORRAN disabled in analysis on AOD's");
 942       iPWG4JCORRAN = 0;
 943       if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
 944       iPWG4PtQAMC        = 0;
 945       if( iPWG4PtQATPC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtTPC disabled in analysis on AOD's");
 946       iPWG4PtQATPC        = 0;
 947       if( iPWG4Cosmics)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Comics disabled in analysis on AOD's");
 948       iPWG4Cosmics        = 0;
 949
 950       if( iPWG4PtSpectra)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis on AOD's");
 951       iPWG4PtSpectra     = 0;
 952       if(iPWG4KMeans)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4KMeans disabled on AOD's");
 953       iPWG4KMeans       = 0;
 954       if (iPWG4JetCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4Jetcorr disabled on AOD's");
 955       iPWG4JetCorr = 0;
 956       if (iPWG4PartCorr)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4partcorr disabled on AOD's");
 957       iPWG4PartCorr = 0;
 958       if (iPWG4CaloQA)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4CaloQA disabled on AOD's");
 959       iPWG4CaloQA = 0;
 960       if (iPWG4Tagged)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4tagged disabled on AOD's");
 961       iPWG4Tagged = 0;
 962       if (iPWG4omega3pi)
 963         ::Info("AnalysisTrainNew.C::CheckModuleFlags", "PWG4omega3pi disabled on AOD's");
 964       iPWG4omega3pi = 0;
 965       if(iPWG1QASym)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG1 QA Sym disabled in analysis on AOD's");
 966       if (iPWG4GammaConv)::Info("AnalysisPWG4Jets.C::CheckModuleFlags", "PWG4gammaconv disabled on AOD's");
 967       iPWG4GammaConv = 0;
 968       iPWG1QASym     = 0;
 969    } else {
 970    // ESD analysis
 971      if (!kUseMC){
 972        kUseTR = kFALSE;
 973
 974        if(kUseKinefilter)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 Kine Filter disabled in analysis without MC");
 975        kUseKinefilter = kFALSE;
 976        if( iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 PtQAMC disabled in analysis without MC");
 977        iPWG4PtQAMC        = 0;
 978        if( iPWG4CorrectionsUE)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "PWG4 CorrectionsUE disabled in analysis without MC");
 979        iPWG4CorrectionsUE = 0;
 980      }
 981      if (!kUseTR) {
 982        if(iPWG4PtQAMC)::Info("AnalysisTrainPWG4Jets.C::CheckModuleFlags", "iPWG4QATPCMC disabled if not reading track references");
 983        iPWG4PtQAMC        = 0;
 984      }
 985      if (iJETAN){
 986        iESDfilter=1;
 987      }
 988       if (!iESDfilter){
 989         kUseKinefilter = kFALSE;
 990         kUseMuonfilter = kFALSE;
 991       }
 992       if(!iJETAN){
 993         iPWG4JetSpectrum = iPWG4UE =  iPWG4CorrectionsUE = iPWG4ThreeJets = iPWG4QGSep = iDIJETAN = 0;
 994       }
 995    }
 996    iPWG4JetTasks = iPWG4JetServices||iPWG4JetSpectrum||iPWG4UE||iPWG4LeadingUE||iPWG4PtQAMC||iPWG4PtSpectra||iPWG4PtQATPC||iPWG4Cosmics||iPWG4ThreeJets||iPWG4QGSep||iPWG4JetChem||iPWG4Minijet||iPWG4Fragmentation;
 997    iPWG4PartCorrLibs = iPWG4PartCorr||iPWG4Tagged||iPWG4CaloQA;
 998    iPWG4GammaConvLib = iPWG4GammaConv||iPWG4CaloConv;
 999
1000
1001    iEMCUtilLibs = iPWG4PartCorrLibs||iPWG4JCORRAN||iPWG4GammaConvLib;
1002    iJETANLib = iPWG4JetTasks||iJETAN||iDIJETAN;
1003
1004    if (iESDfilter) {iAODhandler=1;}
1005    if (kUseKinefilter && !kUseMC) kUseKinefilter = kFALSE;
1006    if (kUseAODTags && !iAODhandler) kUseAODTags = kFALSE;
1007
1008
1009
1010 }
1011
1012 //______________________________________________________________________________
1013 Bool_t Connect(const char *mode) {
1014 // Connect <username> to the back-end system.
1015    Int_t imode = -1;
1016    if (!strcmp(mode, "LOCAL")) imode = 0;
1017    if (!strcmp(mode, "PROOF")) imode = 1;
1018    if (!strcmp(mode, "GRID"))  imode = 2;
1019    TString username = gSystem->Getenv("alien_API_USER");
1020    switch (imode) {
1021       case 0:
1022          break;
1023       case 1:
1024          if  (!username.Length()) {
1025             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1026                            1. Have called: alien-token-init <username>\n \
1027                            2. Have called: >source /tmp/gclient_env_$UID");
1028             return kFALSE;
1029          }
1030          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to PROOF cluster <%s>",
1031                 username.Data(), kProofCluster.Data());
1032          gEnv->SetValue("XSec.GSI.DelegProxy", "2");
1033 //         TProof::Open(Form("%s@%s:31093", username.Data(), kProofCluster.Data()));
1034          TProof::Open(Form("%s@%s", username.Data(), kProofCluster.Data()));
1035          if (!gProof) {
1036             if (strcmp(gSystem->Getenv("XrdSecGSISRVNAMES"), "lxfsrd0506.cern.ch"))
1037                ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Environment XrdSecGSISRVNAMES different from lxfsrd0506.cern.ch");
1038             return kFALSE;
1039          }
1040          if(kProofClearPackages)gProof->ClearPackages();
1041
1042          if(kProofSaveToAlien){
1043            TGrid::Connect("alien://");
1044            if (gGrid) {
1045              TString homedir = gGrid->GetHomeDirectory();
1046              TString workdir = homedir + kTrainName;
1047              if (!gGrid->Cd(workdir)) {
1048                gGrid->Cd(homedir);
1049                if (gGrid->Mkdir(workdir)) {
1050                  gGrid->Cd(kTrainName);
1051                  ::Info("AnalysisTrainPWG4Jets::Connect()", "Directory %s created", gGrid->Pwd());
1052                }
1053              }
1054              gGrid->Mkdir("proof_output");
1055              gGrid->Cd("proof_output");
1056              kProofOutdir = Form("alien://%s", gGrid->Pwd());
1057            }
1058          }
1059          break;
1060       case 2:
1061          if  (!username.Length()) {
1062             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode), "Make sure you:\n \
1063                            1. Have called: alien-token-init <username>\n \
1064                            2. Have called: >source /tmp/gclient_env_$UID");
1065             return kFALSE;
1066          }
1067          if (kPluginUse && !gSystem->Getenv("alien_CLOSE_SE")) {
1068             ::Error(Form("AnalysisTrainPWG4Jets.C::Connect <%s>", mode),
1069                            "When using the AliEn plugin it is preferable to define the \
1070                            variable alien_CLOSE_SE in your environment.");
1071             return kFALSE;
1072          }
1073          ::Info("AnalysisTrainPWG4Jets.C::Connect", "Connecting user <%s> to AliEn ...",
1074                 username.Data());
1075          TGrid::Connect("alien://");
1076          if (!gGrid || !gGrid->IsConnected()) return kFALSE;
1077          break;
1078       default:
1079          ::Error("AnalysisTrainPWG4Jets.C::Connect", "Unknown run mode: %s", mode);
1080          return kFALSE;
1081    }
1082    ::Info("AnalysisTrainPWG4Jets.C::Connect","Connected in %s mode", mode);
1083    return kTRUE;
1084 }
1085
1086 //______________________________________________________________________________
1087 Bool_t LoadCommonLibraries(const char *mode)
1088 {
1089 // Load common analysis libraries.
1090    Int_t imode = -1;
1091    if (!strcmp(mode, "LOCAL")) imode = 0;
1092    if (!strcmp(mode, "PROOF")) imode = 1;
1093    if (!strcmp(mode, "GRID"))  imode = 2;
1094    if (!gSystem->Getenv("ALICE_ROOT")) {
1095       ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Analysis train requires that ALICE_ROOT is set to pick up Configurations");
1096       return kFALSE;
1097    }
1098    Bool_t success = kTRUE;
1099    // ROOT libraries
1100    gSystem->Load("libTree.so");
1101    gSystem->Load("libGeom.so");
1102    gSystem->Load("libVMC.so");
1103    gSystem->Load("libPhysics.so");
1104
1105    // Load framework classes. Par option ignored here.
1106    switch (imode) {
1107       case 0:
1108       case 2:
1109          if (kUseCPAR) {
1110             success &= LoadLibrary("STEERBase", mode, kTRUE);
1111             success &= LoadLibrary("ESD", mode, kTRUE);
1112             success &= LoadLibrary("AOD", mode, kTRUE);
1113             success &= LoadLibrary("ANALYSIS", mode, kTRUE);
1114             success &= LoadLibrary("ANALYSISalice", mode, kTRUE);
1115             success &= LoadLibrary("CORRFW", mode, kTRUE);
1116          } else {
1117             success &= LoadLibrary("libSTEERBase.so", mode);
1118             success &= LoadLibrary("libESD.so", mode);
1119             success &= LoadLibrary("libAOD.so", mode);
1120             success &= LoadLibrary("libANALYSIS.so", mode);
1121             success &= LoadLibrary("libANALYSISalice.so", mode);
1122             success &= LoadLibrary("libCORRFW.so", mode);
1123             gROOT->ProcessLine(".include $ALICE_ROOT/include");
1124          }
1125          break;
1126       case 1:
1127          Int_t ires = -1;
1128          if (kProofUseAFPAR && !gSystem->AccessPathName(kProofAFversion)) ires = gProof->UploadPackage(kProofAFversion);
1129          if (ires < 0) {
1130             success &= LoadLibrary("STEERBase", mode);
1131             success &= LoadLibrary("ESD", mode);
1132             success &= LoadLibrary("AOD", mode);
1133             success &= LoadLibrary("ANALYSIS", mode);
1134             success &= LoadLibrary("ANALYSISalice", mode);
1135             success &= LoadLibrary("CORRFW", mode);
1136          } else {
1137             ires = gProof->EnablePackage(kProofAFversion);
1138             if (ires<0) success = kFALSE;
1139             success &= LoadLibrary("CORRFW", mode);
1140          }
1141          break;
1142       default:
1143          ::Error("AnalysisTrainPWG4Jets.C::LoadCommonLibraries", "Unknown run mode: %s", mode);
1144          return kFALSE;
1145    }
1146    if (success) {
1147       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    SUCCESS");
1148       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Include path for Aclic compilation:\n%s",
1149               gSystem->GetIncludePath());
1150    } else {
1151       ::Info("AnalysisTrainPWG4Jets.C::LoadCommodLibraries", "Load common libraries:    FAILED");
1152    }
1153
1154    return success;
1155 }
1156
1157 //______________________________________________________________________________
1158 Bool_t LoadAnalysisLibraries(const char *mode)
1159 {
1160 // Load common analysis libraries.
1161   Bool_t success = kTRUE;
1162   if (useTender) {
1163       if (!LoadLibrary("TENDER", mode, kTRUE) ||
1164           !LoadLibrary("TENDERSupplies", mode, kTRUE)) return kFALSE;
1165    }
1166    if (iESDfilter) {
1167      /*
1168       if (!LoadLibrary("PWG3base", mode, kTRUE) ||
1169           !LoadLibrary("PWG3muon", mode, kTRUE)) return kFALSE;
1170      */
1171    }
1172    // JETAN
1173    if (iJETANLib) {
1174      // this part needs some rework in case we do not need the fastjed finders for processing
1175      if (!LoadLibrary("JETAN", mode, kTRUE)) return kFALSE;
1176      if (!strcmp(mode, "PROOF")){
1177        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libCGAL.so\"\)", kTRUE);
1178        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libfastjet.so\"\)", kTRUE);
1179        // problem when loading siscone copiled with different gcc version??
1180        // gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libsiscone.so\"\)", kTRUE);
1181        gProof->Exec("gSystem->Load\(\"/afs/cern.ch/user/d/dperrino/public/libSISConePlugin.so\"\)", kTRUE);
1182      }
1183      if(!kUsePAR){
1184        if (!LoadLibrary("CGAL", mode, kTRUE)) return kFALSE;
1185        if (!LoadLibrary("fastjet", mode, kTRUE)) return kFALSE;
1186        if (!LoadLibrary("siscone", mode, kTRUE)) return kFALSE;
1187        if (!LoadLibrary("SISConePlugin", mode, kTRUE)) return kFALSE;
1188      }
1189      else{
1190        // par files plus FASTJET needs some extra work... need to change
1191        // the loading sequence in the auto generated .C file
1192        if (!LoadLibrary("libCGAL.so", mode, kTRUE)) return kFALSE;
1193        if (!LoadLibrary("libfastjet.so", mode, kTRUE)) return kFALSE;
1194        if (!LoadLibrary("libsiscone.so", mode, kTRUE)) return kFALSE;
1195        if (!LoadLibrary("libSISConePlugin.so", mode, kTRUE)) return kFALSE;
1196      }
1197      if (!LoadLibrary("FASTJETAN", mode, kTRUE)) return kFALSE;
1198    }
1199    if(iPWG4JetTasks){
1200      if (!LoadLibrary("PWG4JetTasks", mode, kTRUE)) return kFALSE;
1201    }
1202
1203    if(iPWG1QASym){
1204      if (!LoadSource(Form("%s/PWG1/AliAnalysisTaskQASym.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1205    }
1206    if(iPWG4TmpSourceSara){
1207      if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1208      if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskEta.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1209    }
1210
1211    /*
1212    if(iPWG4JetChem){
1213      if(!kUsePAR)gSystem->AddIncludePath("-I$ALICE_ROOT/include/JetTasks"); // ugly hack!!
1214      if(!LoadSource(Form("%s/PWG4/JetTasks/AliAnalysisTaskJetChem.cxx",gSystem->ExpandPathName("$ALICE_ROOT")), mode, kTRUE))return kFALSE;
1215    }
1216    */
1217
1218    if(iEMCUtilLibs){
1219      if (!LoadLibrary("EMCALUtils", mode, kTRUE) ||
1220          !LoadLibrary("PHOSUtils", mode, kTRUE)) return kFALSE;
1221    }
1222
1223    if (iPWG4PartCorrLibs) {
1224       if (!LoadLibrary("PWG4PartCorrBase", mode, kTRUE) ||
1225           !LoadLibrary("PWG4PartCorrDep", mode, kTRUE)) return kFALSE;
1226    }
1227    if(iPWG4JCORRAN){
1228      // PWG4 particle correlations
1229      if(!LoadLibrary("PWG4JCORRAN",mode,kTRUE))return kFALSE;
1230    }
1231    if (iPWG4JetCorr) {
1232      if (!LoadLibrary("PWG4JetCorrel", mode, kTRUE)) return kFALSE;
1233    }
1234    if (iPWG4omega3pi) {
1235      if (!LoadLibrary("PWG4omega3pi", mode, kTRUE)) return kFALSE;
1236    }
1237    if (iPWG4GammaConvLib) {
1238       if (!LoadLibrary("PWG4GammaConv", mode, kTRUE)) return kFALSE;
1239    }
1240
1241    ::Info("AnalysisTrainPWG4Jets.C::LoadAnalysisLibraries", "Load other libraries:   SUCCESS");
1242    return kTRUE;
1243 }
1244
1245 //______________________________________________________________________________
1246 Bool_t LoadLibrary(const char *module, const char *mode, Bool_t rec=kFALSE)
1247 {
1248 // Load a module library in a given mode. Reports success.
1249    Int_t imode = -1;
1250    Int_t result;
1251    TString smodule(module);
1252    if (!strcmp(mode, "LOCAL")) imode = 0;
1253    if (!strcmp(mode, "PROOF")) imode = 1;
1254    if (!strcmp(mode, "GRID"))  imode = 2;
1255    TString mod(module);
1256    if (!mod.Length()) {
1257       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Empty module name");
1258       return kFALSE;
1259    }
1260    // If a library is specified, just load it
1261    if (smodule.EndsWith(".so")) {
1262       mod.Remove(mod.Index(".so"));
1263       result = gSystem->Load(mod);
1264       if (result < 0) {
1265          ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load library %s", module);
1266          return kFALSE;
1267       }
1268       if (rec) anaLibs += Form("%s.so ",mod.Data());
1269       if (rec) anaLibsExtra += Form("%s.so ",mod.Data());
1270       return kTRUE;
1271    }
1272    // Check if the library is already loaded
1273    if (strlen(gSystem->GetLibraries(Form("%s.so", module), "", kFALSE)) > 0)
1274       return kTRUE;
1275    switch (imode) {
1276       case 0:
1277       case 2:
1278          if (kUsePAR) {
1279             result = SetupPar(module);
1280             if (rec) anaPars += Form("%s.par ", module);
1281          } else {
1282             result = gSystem->Load(Form("lib%s.so", module));
1283             if (rec) anaLibs += Form("lib%s.so ", module);
1284          }
1285          break;
1286       case 1:
1287         if(!gSystem->AccessPathName(module)){
1288           ::Info("AnalysisTrainPWG4Jets.C::LoadLibrary", "Removing directory %s",module);
1289           gSystem->Exec(Form("rm -rf %s",module));
1290         }
1291          result = gProof->UploadPackage(module);
1292          if (result<0) {
1293             result = gProof->UploadPackage(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", module)));
1294             if (result<0) {
1295                ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not find module %s.par in current directory nor in $ALICE_ROOT", module);
1296                return kFALSE;
1297             }
1298          }
1299          result = gProof->EnablePackage(module);
1300          break;
1301       default:
1302          return kFALSE;
1303    }
1304    if (result < 0) {
1305       ::Error("AnalysisTrainPWG4Jets.C::LoadLibrary", "Could not load module %s", module);
1306       return kFALSE;
1307    }
1308    return kTRUE;
1309 }
1310
1311
1312
1313 //______________________________________________________________________________
1314 Bool_t LoadSource(const char *source, const char *mode, Bool_t rec=kFALSE)
1315 {
1316 // Load a module library in a given mode. Reports success.
1317    Int_t imode = -1;
1318    Int_t result = -1;
1319    if (!strcmp(mode, "LOCAL")) imode = 0;
1320    if (!strcmp(mode, "PROOF")) imode = 1;
1321    if (!strcmp(mode, "GRID"))  imode = 2;
1322    TString ssource(source);
1323    TString basename = gSystem->BaseName(ssource.Data());
1324    if (!ssource.Length()) {
1325       ::Error("AnalysisTrainPWG4Jets.C::LoadSource", "Empty task name");
1326       return kFALSE;
1327    }
1328    // we have a source code so compile it
1329    if (ssource.EndsWith(".cxx")) {
1330      // need to copy it here other wise the path is also used on grid...
1331      ssource.Remove(ssource.Index(".cxx"));
1332      basename.Remove(basename.Index(".cxx"));
1333      Printf("LoadSources:: Copying...  path %s{cxx,h}",ssource.Data());
1334      gSystem->Exec(Form("cp %s.cxx . ",ssource.Data()));
1335      gSystem->Exec(Form("cp %s.h . ",ssource.Data()));
1336      // Path to code
1337      // only needed for local compilation, in grid and proof mode
1338      // the task headers are uploaded
1339      //     path.Remove(path.Index(gSystem->BaseName(path.Data())));
1340      // Printf("LoadSources:: Including path %s",path.Data());
1341      //  if(path.Length()>0)gROOT->ProcessLine(Form(".include %s",path.Data()));
1342      Printf("LoadSources:: Loading...  path %s",basename.Data());
1343      switch (imode) {
1344      case 0:
1345        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1346        break;
1347      case 1:
1348        result = gProof->LoadMacro(Form("%s.cxx++g",basename.Data()));
1349        break;
1350      case 2:
1351        result = gROOT->LoadMacro(Form("%s.cxx++g",basename.Data()));
1352        if (rec){
1353          // what we want to compile
1354          anaSources += Form("%s.cxx ",basename.Data());
1355          // what we need as input...
1356          anaLibs += Form("%s.cxx %s.h ",basename.Data(),basename.Data());
1357        }
1358        break;
1359      default:
1360        return kFALSE;
1361      }
1362    }
1363    if (result < 0) {
1364       ::Error("AnalysisTrainPWG4Jets.C::LoadSources", "Could not load source %s", source);
1365       return kFALSE;
1366    }
1367    return kTRUE;
1368 }
1369
1370
1371 //______________________________________________________________________________
1372 TChain *CreateChain(const char *mode, const char *plugin_mode)
1373 {
1374 // Create the input chain
1375    Int_t imode = -1;
1376    if (!strcmp(mode, "LOCAL")) imode = 0;
1377    if (!strcmp(mode, "PROOF")) imode = 1;
1378    if (!strcmp(mode, "GRID"))  imode = 2;
1379    TChain *chain = NULL;
1380    // Local chain
1381    switch (imode) {
1382       case 0:
1383          if (iAODanalysis) {
1384             if (!kLocalXMLDataset.Length()) {
1385                // Local AOD
1386                chain = new TChain("aodTree");
1387                TString line;
1388                ifstream in;
1389                in.open(kLocalDataList.Data());
1390                while (in.good()) {
1391                  in >> line;
1392                  if (line.Length() == 0) continue;
1393                  // cout << " line = " << line << endl;
1394                  chain->Add(line.Data());
1395                }
1396             } else {
1397                // Interactive AOD
1398                chain = CreateChainSingle(kLocalXMLDataset, "aodTree");
1399             }
1400          } else {
1401            if (!kLocalXMLDataset.Length()) {
1402              // Local ESD
1403              chain = new TChain("esdTree");
1404              TString line;
1405              ifstream in;
1406              in.open(kLocalDataList.Data());
1407              while (in.good()) {
1408                in >> line;
1409                if (line.Length() == 0) continue;
1410                cout << " line = " << line << endl;
1411                chain->Add(line.Data());
1412              }
1413            } else {
1414              // Interactive ESD
1415                chain = CreateChainSingle(kLocalXMLDataset, "esdTree");
1416            }
1417          }
1418          break;
1419       case 1:
1420          break;
1421       case 2:
1422          if (kPluginUse) {
1423 //            AliAnalysisGrid *alienHandler = CreateAlienHandler(plugin_mode);
1424 //            AliAnalysisManager::GetAnalysisManager()->SetGridHandler(alienHandler);
1425          } else {
1426             TString           treeName = "esdTree";
1427             if (iAODanalysis) treeName = "aodTree";
1428             chain = CreateChainSingle("wn.xml", treeName);
1429          }
1430          break;
1431       default:
1432    }
1433    if (chain && chain->GetNtrees()) return chain;
1434    return NULL;
1435 }
1436
1437 //______________________________________________________________________________
1438 TChain* CreateChainSingle(const char* xmlfile, const char *treeName)
1439 {
1440    printf("*******************************\n");
1441    printf("*** Getting the ESD Chain   ***\n");
1442    printf("*******************************\n");
1443    TAlienCollection * myCollection  = TAlienCollection::Open(xmlfile);
1444
1445    if (!myCollection) {
1446       ::Error("AnalysisTrainPWG4Jets.C::CreateChainSingle", "Cannot create an AliEn collection from %s", xmlfile) ;
1447       return NULL ;
1448    }
1449
1450    TChain* chain = new TChain(treeName);
1451    myCollection->Reset() ;
1452    while ( myCollection->Next() ) chain->Add(myCollection->GetTURL("")) ;
1453    chain->ls();
1454    return chain;
1455 }
1456
1457 //______________________________________________________________________________
1458 Int_t SetupPar(char* pararchivename)
1459 {
1460    if (!pararchivename || !strlen(pararchivename)) return -1;
1461    char processline[1024];
1462    if (gSystem->AccessPathName(Form("%s.par", pararchivename))) {
1463       if (!gSystem->AccessPathName(Form("%s/%s.par", gSystem->Getenv("ALICE_ROOT"),pararchivename))) {
1464          ::Info("AnalysisTrainPWG4Jets.C::SetupPar", "Getting %s.par from $ALICE_ROOT", pararchivename);
1465         TFile::Cp(gSystem->ExpandPathName(Form("$ALICE_ROOT/%s.par", pararchivename)),
1466                   Form("%s.par",pararchivename));
1467       } else {
1468          ::Error("AnalysisTrainPWG4Jets.C::SetupPar", "Cannot find %s.par", pararchivename);
1469          return -1;
1470       }
1471    }
1472    if (kPluginUse && kSaveTrain) gSystem->Exec(Form("ln -s ../%s.par %s",pararchivename, kTrainName.Data()));
1473    gSystem->Exec(Form("tar xvzf %s.par", pararchivename));
1474
1475    TString ocwd = gSystem->WorkingDirectory();
1476    if (!gSystem->ChangeDirectory(pararchivename)) return -1;
1477
1478    // check for BUILD.sh and execute
1479    if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) {
1480       printf("*******************************\n");
1481       printf("*** Building PAR archive    ***\n");
1482       printf("*******************************\n");
1483       if (gSystem->Exec("PROOF-INF/BUILD.sh")) {
1484          Error("runProcess","Cannot Build the PAR Archive! - Abort!");
1485          return -1;
1486       }
1487    }
1488
1489         // check for SETUP.C and execute
1490         if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) {
1491             printf("*******************************\n");
1492             printf("*** Setup PAR archive       ***\n");
1493             printf("*******************************\n");
1494             gROOT->Macro("PROOF-INF/SETUP.C");
1495         }
1496         if (!gSystem->ChangeDirectory(ocwd.Data())) return -1;
1497    return 0;
1498 }
1499
1500 //______________________________________________________________________________
1501 AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
1502 {
1503 // Check if user has a valid token, otherwise make one. This has limitations.
1504 // One can always follow the standard procedure of calling alien-token-init then
1505 //   source /tmp/gclient_env_$UID in the current shell.
1506 //   if (!AliAnalysisGrid::CreateToken()) return NULL;
1507    AliAnalysisAlien *plugin = new AliAnalysisAlien();
1508 // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
1509    plugin->SetRunMode(plugin_mode);
1510    if (kPluginUseProductionMode) plugin->SetProductionMode();
1511    plugin->SetJobTag(kJobTag);
1512    plugin->SetNtestFiles(1);
1513 //   plugin->SetPreferedSE("ALICE::NIHAM::File");
1514 // Set versions of used packages
1515    plugin->SetAPIVersion("V1.1x");
1516    //   plugin->SetAPIVersion("V1.0x");
1517 //   plugin->SetAPIVersion("V2.4");
1518    plugin->SetROOTVersion(kPluginRootVersion);
1519    plugin->SetAliROOTVersion(kPluginAliRootVersion);
1520 // Declare input data to be processed.
1521 // Method 1: Create automatically XML collections using alien 'find' command.
1522 // Define production directory LFN
1523    plugin->SetGridDataDir(kGridDatadir.Data());
1524 // Set data search pattern
1525    if (iAODanalysis) plugin->SetDataPattern(" *AliAOD.root");
1526    //   else              plugin->SetDataPattern(Form(" %s/*/*ESD.tag.root",kGridPassPattern.Data()));
1527    else              plugin->SetDataPattern(Form(" %s/*/*AliESDs.root",kGridPassPattern.Data()));
1528 // ...then add run numbers to be considered
1529 //   plugin->SetRunRange(kGridRunRange[0], kGridRunRange[1]);
1530    for (Int_t i=kGridRunRange[0]; i<=kGridRunRange[1]; i++) {
1531      Printf("AnalysisTrainPWG4Jets Adding run number %s", Form(kGridRunPattern.Data(),i));
1532      plugin->AddRunNumber(Form(kGridRunPattern.Data(),i));
1533    }
1534
1535    if(kGridLocalRunList.Length()>0){
1536      ifstream in1;
1537      in1.open(kGridLocalRunList.Data());
1538      int iRun;
1539      int icount = 0;
1540      /*
1541      char c;
1542      char cLine[250];
1543      while(!in1.eof()){
1544        c = in1.get();
1545        if ( (c >= '0') && (c <= '9') )
1546          {
1547            in1.putback (c);
1548            in1>>iRun;
1549            Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1550            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1551        }
1552      else
1553        {
1554          in1.putback (c);
1555          in1.getline(cLine,250);
1556
1557        }
1558      }
1559      */
1560
1561      Int_t nRun = 0;
1562
1563      // just use run numbers, negatives will be excluded
1564      while(in1>>iRun){
1565        if(iRun>= kGridOffsetRunFromList&&(nRun<kGridMaxRunsFromList)){
1566            Printf("AnalysisTrainPWG4Jets Adding run number from File %s", Form(kGridRunPattern.Data(),iRun));
1567            plugin->AddRunNumber(Form(kGridRunPattern.Data(),iRun));
1568            nRun++;
1569        }
1570        else{
1571          Printf("AnalysisTrainPWG4Jets Skipping run number from File %d", iRun);
1572        }
1573      }
1574    }
1575
1576 // Method 2: Declare existing data files (raw collections, xml collections, root file)
1577 // If no path mentioned data is supposed to be in the work directory (see SetGridWorkingDir())
1578 // XML collections added via this method can be combined with the first method if
1579 // the content is compatible (using or not tags)
1580 //   plugin->AddDataFile("tag.xml");
1581 //   plugin->AddDataFile("/alice/data/2008/LHC08c/000057657/raw/Run57657.Merged.RAW.tag.root");
1582 // Define alien work directory where all files will be copied. Relative to alien $HOME.
1583    TString alien_workdir = "";
1584
1585    if (iAODanalysis)  alien_workdir += "analysisAOD";
1586    else               alien_workdir += "analysisESD";
1587    if(kGridDataSet.Length()>0)alien_workdir += Form("/%s",kGridDataSet.Data());
1588    plugin->SetGridWorkingDir(alien_workdir.Data());
1589
1590    // Declare alien output directory. Relative to working directory.
1591    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1592    plugin->SetGridOutputDir(kGridOutdir);
1593
1594    // Add external packages
1595    if (iJETAN||iDIJETAN) {
1596       plugin->AddExternalPackage("boost::v1_43_0");
1597       plugin->AddExternalPackage("cgal::v3.6");
1598       plugin->AddExternalPackage("fastjet::v2.4.2");
1599    }
1600
1601
1602    // set extra libs before par file compilation
1603    anaLibs += kGridExtraFiles;
1604    anaLibs     = anaLibs.Strip();
1605    Printf("anaLibs %s",anaLibs.Data());
1606    Printf("anaLibsExtra %s",anaLibsExtra.Data());
1607
1608    if (anaLibs.Length())          plugin->SetAdditionalLibs(anaLibs.Data());
1609    if (anaLibsExtra.Length())     plugin->SetAdditionalRootLibs(anaLibsExtra.Data());
1610
1611    TString ana_sources = "";
1612    TString ana_add = "";
1613    if (kUsePAR && anaPars.Length()) {
1614       printf("%s\n", anaPars.Data());
1615       TObjArray *arr;
1616       TObjString *objstr;
1617       arr = anaPars.Tokenize(" ");
1618       TIter next(arr);
1619       while ((objstr=(TObjString*)next())) plugin->EnablePackage(objstr->GetString());
1620       delete arr;
1621    }
1622
1623 // Declare the analysis source files names separated by blancs. To be compiled runtime
1624 // using ACLiC on the worker nodes.
1625    ana_sources = anaSources.Strip();
1626 // Declare all libraries (other than the default ones for the framework. These will be
1627 // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
1628
1629    if (ana_sources.Length()) plugin->SetAnalysisSource(ana_sources);
1630    plugin->SetExecutableCommand(kPluginExecutableCommand.Data());
1631    // Declare the output file names separated by blancs.
1632    // (can be like: file.root or file.root@ALICE::Niham::File)
1633    plugin->SetMergeExcludes(kGridMergeExclude);
1634    plugin->SetMaxMergeFiles(kGridMaxMergeFiles);
1635    plugin->SetNrunsPerMaster(kGridRunsPerMaster);
1636    plugin->SetMergeViaJDL(kPluginMergeViaJDL);
1637    // Use fastread option
1638    plugin->SetFastReadOption(kPluginFastReadOption);
1639    // UseOverwrite mode
1640    plugin->SetOverwriteMode(kPluginOverwriteMode);
1641    // Optionally define the files to be archived.
1642    //   plugin->SetOutputArchive("log_archive.zip:stdout,stderr@ALICE::NIHAM::File root_archive.zip:AliAOD.root,AOD.tag.root@ALICE::NIHAM::File");
1643    plugin->SetOutputToRunNo(kPluginOutputToRunNumber);     // write the output to subdirs named after run number
1644
1645    // Put default output files to archive
1646    TString listhists = "";
1647    TString listaods  = "";
1648    AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1649    TIter next(mgr->GetOutputs());
1650    AliAnalysisDataContainer *output;
1651    while ((output=(AliAnalysisDataContainer*)next())) {
1652       const char *filename = output->GetFileName();
1653       if (!(strcmp(filename, "default"))) {
1654         if (!mgr->GetOutputEventHandler()) continue;
1655          filename = mgr->GetOutputEventHandler()->GetOutputFileName();
1656          if (listaods.Length()) listaods += " ";
1657          listaods += filename;
1658       } else {
1659         if(!listhists.Contains(filename)){
1660           if (listhists.Length()) listhists += " ";
1661           listhists += filename;
1662         }
1663       }
1664    }
1665
1666    if (mgr->GetExtraFiles().Length()) {
1667      if (listaods.Length()) listaods += " ";
1668      listaods += mgr->GetExtraFiles();
1669    }
1670
1671    // if we do not fill the aod we do not need to store it
1672    //   kGridMergeExclude = listaods;
1673
1674    if(kSaveAOD!=0){
1675      TString outputFiles =  "";
1676      outputFiles += mgr->GetExtraFiles();
1677      if (listhists.Length()) outputFiles += " ";
1678      outputFiles += listhists;
1679      plugin->SetDefaultOutputs(kFALSE);
1680      Printf("%s:%d Starting with the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
1681      // remove
1682      // no harm done when we try to remove something that is not there :)
1683      if(!(kSaveAOD&(1<<0))){
1684        outputFiles.ReplaceAll("AliAOD.root ","");
1685        listaods.ReplaceAll("AliAOD.root ","");
1686      }
1687      if(!(kSaveAOD&(1<<1))){
1688        if(kDeltaAODJetName.Length())outputFiles.ReplaceAll(kDeltaAODJetName.Data(),"");
1689        if(kDeltaAODJetName.Length())listaods.ReplaceAll(kDeltaAODJetName.Data(),"");
1690
1691      }
1692      if(!(kSaveAOD&(1<<2))){
1693        if(kDeltaAODPartCorrName.Length())outputFiles.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
1694        if(kDeltaAODPartCorrName.Length())listaods.ReplaceAll(kDeltaAODPartCorrName.Data(),"");
1695      }
1696      if(!(kSaveAOD&(1<<3))){
1697        if(kDeltaAODJCORRANName.Length())outputFiles.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
1698        if(kDeltaAODJCORRANName.Length())listaods.ReplaceAll(kDeltaAODJCORRANName.Data(),"");
1699      }
1700
1701      //
1702      Printf("%s:%d Saving the files %s",(char*)__FILE__,__LINE__,outputFiles.Data());
1703      plugin->SetOutputFiles(outputFiles.Data());
1704    }
1705
1706    TString outputArchive;
1707    outputArchive = Form("log_archive.zip:std*@%s","disk=1");
1708    listaods.ReplaceAll(" ", ",");
1709    listhists.ReplaceAll(" ", ",");
1710    if (listhists.Length()){
1711      outputArchive += " ";
1712      outputArchive += "root_archive.zip:";
1713      outputArchive += listhists;
1714      if (listaods.Length()){
1715        outputArchive += ",";
1716        outputArchive += listaods;
1717      }
1718      outputArchive += Form("@%s", kGridOutputStorages.Data());
1719    }
1720    else{
1721
1722      if (listaods.Length()){
1723        // we have only aod'ish output
1724        outputArchive += " ";
1725        outputArchive += "root_archive.zip:";
1726        outputArchive += listaods;
1727        outputArchive += Form("@%s", kGridOutputStorages.Data());
1728      }
1729      else{
1730        // no other outputs than std..
1731       ::Fatal("AnalysisTrainPWG4Jets", "No task output !");
1732      }
1733    }
1734
1735    plugin->SetDefaultOutputs(kFALSE);
1736    plugin->SetOutputArchive(outputArchive);
1737
1738
1739    // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
1740    plugin->SetAnalysisMacro(Form("%s.C", kTrainName.Data()));
1741    // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
1742    plugin->SetSplitMaxInputFileNumber(kGridFilesPerJob);
1743    // Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
1744    //   plugin->SetMaxInitFailed(5);
1745    // Optionally resubmit threshold.
1746    // plugin->SetMasterResubmitThreshold(90);
1747    // Optionally set time to live (default 30000 sec)
1748    plugin->SetTTL(54000); // 15h...
1749    // Optionally set input format (default xml-single)
1750    plugin->SetInputFormat("xml-single");
1751    // Optionally modify the name of the generated JDL (default analysis.jdl)
1752    plugin->SetJDLName(Form("%s.jdl", kTrainName.Data()));
1753    // Optionally modify the executable name (default analysis.sh)
1754    plugin->SetExecutable(Form("%s.sh", kTrainName.Data()));
1755    // Optionally modify job price (default 1)
1756    plugin->SetPrice(1);
1757    // Optionally modify split mode (default 'se')
1758    plugin->SetSplitMode("se");
1759    return plugin;
1760 }
1761
1762 //______________________________________________________________________________
1763 void WriteConfig()
1764 {
1765 // Write train configuration in a file. The file name has the format:
1766 // train_[trainName]_ddMonthyyyy_time.C
1767    if (kUseDate) {
1768       gSystem->Exec("date +%d%b%Y_%Hh%M > date.tmp");
1769       ifstream fdate("date.tmp");
1770       if (!fdate.is_open()) {
1771          ::Error("AnalysisTrainPWG4Jets.C::Export","Could not generate file name");
1772          return;
1773       }
1774       const char date[64];
1775       fdate.getline(date,64);
1776       fdate.close();
1777       gSystem->Exec("rm date.tmp");
1778       kTrainName = Form("train_%s_%s", kTrainName.Data(), date);
1779    } else {
1780       kTrainName = Form("train_%s", kTrainName.Data());
1781    }
1782    TString cdir = gSystem->WorkingDirectory();
1783    gSystem->MakeDirectory(kTrainName);
1784    gSystem->ChangeDirectory(kTrainName);
1785    ofstream out;
1786    out.open(Form("%sConfig.C",kTrainName.Data()), ios::out);
1787    if (out.bad()) {
1788       ::Error("AnalysisTrainPWG4Jets.C::Export", "Cannot open ConfigTrain.C for writing");
1789       return;
1790    }
1791    out << "{" << endl;
1792    out << "   kTrainName      = " << "\"" << kTrainName.Data() << "\";" << endl;
1793    out << "   kProofCluster   = " << "\"" << kProofCluster.Data() << "\";" << endl;
1794    out << "   kProofUseAFPAR        = " << kProofUseAFPAR << ";" << endl;
1795    if (kProofUseAFPAR)
1796       out << "   kProofAFversion       = " << kProofAFversion.Data() << ";" << endl;
1797    out << "   kProofDataSet   = " << "\"" << kProofDataSet.Data() << "\";" << endl;
1798    out << "   kPluginUse       = " << kPluginUse << ";" << endl;
1799    out << "   kUsePAR          = " << kUsePAR << ";" << endl;
1800    out << "   kUseCPAR         = " << kUseCPAR << ";" << endl;
1801    out << "   kPluginRootVersion    = " << "\"" << kPluginRootVersion.Data() << "\";" << endl;
1802    out << "   kPluginAliRootVersion = " << "\"" << kPluginAliRootVersion.Data() << "\";" << endl;
1803    out << "   kGridDatadir   = " << "\"" << kGridDatadir.Data() << "\";" << endl;
1804    if (!kGridOutdir.Length()) kGridOutdir = Form("output_%s",kTrainName.Data());
1805    out << "   kGridOutdir    = " << "\"" << kGridOutdir.Data() << "\";" << endl;
1806    out << "   kGridMaxMergeFiles   = " << kGridMaxMergeFiles << ";" << endl;
1807    out << "   kGridMergeExclude    = " << "\"" << kGridMergeExclude.Data() << "\";" << endl;
1808    out << "   kGridRunsPerMaster  = " << kGridRunsPerMaster << ";" << endl;
1809    out << "   kGridFilesPerJob    = " << kGridFilesPerJob << ";" << endl;
1810    out << "   kGridRunRange[0]    = " << kGridRunRange[0] << ";" << endl;
1811    out << "   kGridRunRange[1]    = " << kGridRunRange[1] << ";" << endl;
1812    out << "   kUseDebug          = " << kUseDebug << ";" << endl;
1813    out << "   kUseMC           = " << kUseMC << ";" << endl;
1814    out << "   kUseESDTags         = " << kUseESDTags << ";" << endl;
1815    out << "   kUseKinefilter      = " << kUseKinefilter << ";" << endl;
1816    out << "   kUseTR           = " << kUseTR << ";" << endl;
1817    out << "   kUseAODTags      = " << kUseAODTags << ";" << endl;
1818    out << "   kSaveTrain       = " << "kFALSE;" << endl << endl;
1819    out << "   // Analysis modules" << endl;
1820    out << "   iAODanalysis    = " << iAODanalysis << ";" << endl;
1821    out << "   iAODhandler     = " << iAODhandler << ";" << endl;
1822    out << "   iESDfilter      = " << iESDfilter << ";" << endl;
1823    out << "   iJETAN          = " << iJETAN << ";" << endl;
1824    out << "// Configuration fot the wagons" << endl;
1825    out << "}" << endl;
1826    ::Info("AnalysisTrainPWG4Jets.C::WriteConfig", "Train configuration wrote to file %s", Form("config_%s.C", kTrainName.Data()));
1827    gSystem->ChangeDirectory(cdir);
1828 }
1829
1830 //______________________________________________________________________________
1831 Bool_t LoadConfig(const char *filename)
1832 {
1833 // Read train configuration from file
1834    if (gSystem->AccessPathName(filename)) {
1835       ::Error("AnalysisTrainPWG4Jets.C::LoadConfig", "Config file name not found");
1836       return kFALSE;
1837    }
1838    gROOT->ProcessLine(Form(".x %s", filename));
1839    ::Info("AnalysisTrainPWG4Jets.C::LoadConfig", "Train configuration loaded from file %s", filename);
1840    return kTRUE;
1841 }
1842
1843 Bool_t PatchJDL(){
1844   Printf(">>> Patching JDL");
1845   AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
1846   AliAnalysisAlien*    gridHandler = (AliAnalysisAlien*)mgr->GetGridHandler();
1847   TGridJDL *jdl = gridHandler->GetGridJDL();
1848   if(iJETAN)jdl->AddToPackages("fastjet","v2.4.0");
1849   gridHandler->WriteJDL(kFALSE);
1850   Printf("<<<  Patching JDL");
1851   return kTRUE;
1852 }
1853
1854 Bool_t PatchAnalysisMacro(){
1855   Printf(">>> Patching AnalysisMacro");
1856   gSystem->Exec(Form("mv %s.C %s.C_tmp",kTrainName.Data(),kTrainName.Data()));
1857
1858   ifstream in1;
1859   in1.open(Form("%s.C_tmp", kTrainName.Data()));
1860   char cLine[250];
1861   TString st;
1862   while(in1.getline(cLine,250)){
1863     st += cLine;
1864     st += "\n";
1865   }
1866   Int_t index= -1;
1867   index = st.Index("gSystem->Load(\"libPhysics\");");
1868   index += strlen("gSystem->Load(\"libPhysics\");");
1869   /*
1870     TObjArray *arr;
1871     TObjString *objstr;
1872     arr = anaLibs.Tokenize(" ");
1873     TIter next(arr);
1874
1875     add += "\n\n // added by CKB \n";
1876     while ((objstr=(TObjString*)next())){
1877       if(objstr->GetString().Contains("PWG3"))continue;
1878       if(objstr->GetString().EndsWith(".so"))add += Form("gSystem->Load(\"%s\");\n",objstr->GetString().Data());
1879     }
1880     delete arr;
1881     */
1882     //    add += Form("AliLog::SetGlobalLogLevel(%d);\n",AliLog::GetGlobalLogLevel());
1883   TString add = "";
1884
1885   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1886   add += "\n\n // added by CKB \n";
1887   if(kErrorIgnoreLevel>0)add += Form("gErrorIgnoreLevel = %d;\n",kErrorIgnoreLevel);
1888   add += "\n gSystem->AddIncludePath(\"./\"); \n";
1889   if(gGrid&&kPluginAliRootVersion.Length()==0){
1890     add += "\n // Dirty hack for TRD reference data \n";
1891     add += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
1892     add += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
1893     add += "\"); \n";
1894   }
1895   add += "// BKC \n\n";
1896   st.Insert(index,add.Data());
1897
1898   if(kUseDebug){
1899     //    st.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
1900   }
1901
1902   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
1903     index = st.Index("gSystem->AddIncludePath(\"-I$"); // uncommen $ALICE_ROOT include for par files
1904     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1905     st.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
1906   }
1907
1908   if(AliLog::GetGlobalLogLevel()==AliLog::kFatal){
1909     index = st.Index("AliLog::SetGlobal"); // ncomment setting of log level, do my own
1910     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1911     st.Insert(index,"AliLog::SetGlobalLogLevel(AliLog::kFatal);// CKB \n  // CKB comment out for own setting \n  //");
1912   }
1913
1914   ofstream out;
1915   out.open(Form("%s.C", kTrainName.Data()));
1916   if (out.bad()) {
1917     return kFALSE;
1918   }
1919   out << st << endl;
1920   Printf("<<< Patching AnalysisMacro");
1921
1922
1923
1924
1925
1926   Printf(">>> Patching Merge Macro");
1927   gSystem->Exec(Form("mv %s_merge.C %s_merge.C_tmp",kTrainName.Data(),kTrainName.Data()));
1928
1929   ifstream in2;
1930   in2.open(Form("%s_merge.C_tmp", kTrainName.Data()));
1931   TString st2;
1932   while(in2.getline(cLine,250)){
1933     st2 += cLine;
1934     st2 += "\n";
1935   }
1936   index = st2.Index("gSystem->Load(\"libPhysics\");");
1937   index += strlen("gSystem->Load(\"libPhysics\");");
1938   TString add2 = "";
1939   add2 += "\n gSystem->AddIncludePath(\"./\"); \n";
1940   if(gGrid&&kPluginAliRootVersion.Length()==0){
1941     add2 += "\n // Dirty hack for TRD reference data \n";
1942     add2 += "\n gSystem->Setenv(\"ALICE_ROOT\",\"";
1943     add2 += Form("alien://%s/rootfiles/",gGrid->GetHomeDirectory());
1944     add2 += "\"); \n";
1945   }
1946   add2 += "// BKC \n\n";
1947   if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1948   st2.Insert(index,add.Data());
1949
1950
1951   if(kUseDebug){
1952     //    st2.Insert(index,"\n gROOT->ProcessLine(\".trace\"); // CKB \n");
1953   }
1954
1955   if(kUseCPAR&&kPluginAliRootVersion.Length()==0){
1956     index = st2.Index("gSystem->AddIncludePath(\"-I$"); // uncomment $ALICE_ROOT include for par files
1957     if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1958     st2.Insert(index,"// CKB comment out whehn no aliroot is provided \n //");
1959   }
1960
1961   // do not exclude the extra files from merign, this is done explicitly in this train script
1962   //  index = st2.Index("mergeExcludes +="); // uncommen $ALICE_ROOT include for par files
1963   //  if(index<0)Printf("%s:%d index out of bounds",(char*)__FILE__,__LINE__);
1964   // st2.Insert(index,"// CKB comment out, handled explicitly by the train macro \n //");
1965
1966
1967   ofstream out2;
1968   out2.open(Form("%s_merge.C", kTrainName.Data()));
1969   if (out2.bad()) {
1970     return kFALSE;
1971   }
1972   out2 << st2 << endl;
1973   Printf("<<< Patching Merging Macro");
1974
1975
1976
1977   return kTRUE;
1978
1979 }