}
TString homedir = gGrid->GetHomeDirectory();
TString workdir = homedir + fGridWorkingDir;
- if (!gGrid->Cd(workdir)) {
- gGrid->Cd(homedir);
- if (gGrid->Mkdir(workdir)) {
- gGrid->Cd(fGridWorkingDir);
- Info("CreateJDL", "\n##### Created alien working directory %s", fGridWorkingDir.Data());
- } else {
- Warning("CreateJDL", "Working directory %s cannot be created.\n Using %s instead.",
- workdir.Data(), homedir.Data());
- fGridWorkingDir = "";
- }
- }
+ if (DirectoryExists(workdir)) {
+ gGrid->Cd(workdir);
+ return;
+ }
+ // Work directory not existing - create it
+ gGrid->Cd(homedir);
+ if (gGrid->Mkdir(workdir)) {
+ gGrid->Cd(fGridWorkingDir);
+ Info("CreateJDL", "\n##### Created alien working directory %s", fGridWorkingDir.Data());
+ } else {
+ Warning("CreateJDL", "Working directory %s cannot be created.\n Using %s instead.",
+ workdir.Data(), homedir.Data());
+ fGridWorkingDir = "";
+ }
}
//______________________________________________________________________________
Error("CkeckInputData", "AliEn path to base data directory must be set.\n = Use: SetGridDataDir()");
return kFALSE;
}
- if (!gGrid->Cd(fGridDataDir)) {
+ if (!DirectoryExists(fGridDataDir)) {
Error("CheckInputData", "Data directory %s not existing.", fGridDataDir.Data());
return kFALSE;
}
TIter next(arr);
while ((os=(TObjString*)next())) {
path = Form("%s/%s ", fGridDataDir.Data(), os->GetString().Data());
- if (!gGrid->Cd(path)) {
- Warning("CheckInputData", "Run number %s not found in path: %s", os->GetString().Data(), path.Data());
+ if (!DirectoryExists(path)) {
+ Warning("CheckInputData", "Run number %s not found in path: <%s>", os->GetString().Data(), path.Data());
continue;
}
path = Form("%s/%s.xml", workdir.Data(),os->GetString().Data());
Info("CheckDataType", "Using run range [%d, %d]", fRunRange[0], fRunRange[1]);
for (Int_t irun=fRunRange[0]; irun<=fRunRange[1]; irun++) {
path = Form("%s/%d ", fGridDataDir.Data(), irun);
- if (!gGrid->Cd(path)) {
- Warning("CheckInputData", "Run number %d not found in path: %s", irun, path.Data());
+ if (!DirectoryExists(path)) {
+// Warning("CheckInputData", "Run number %d not found in path: <%s>", irun, path.Data());
continue;
}
path = Form("%s/%d.xml", workdir.Data(),irun);
if (fInputFiles && fInputFiles->GetEntries()) return kTRUE;
// Make a single data collection from data directory.
path = fGridDataDir;
- if (!gGrid->Cd(path)) {
+ if (!DirectoryExists(path)) {
Error("CreateDataset", "Path to data directory %s not valid",fGridDataDir.Data());
return kFALSE;
}
- CdWork();
+// CdWork();
if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml";
else file = Form("%s.xml", gSystem->BaseName(path));
if (gSystem->AccessPathName(file)) {
command += " ";
command += pattern;
command += conditions;
- printf("command: %s\n", command.Data());
+ Printf("command: %s", command.Data());
TGridResult *res = gGrid->Command(command);
if (res) delete res;
// Write standard output to file
TIter next(arr);
while ((os=(TObjString*)next())) {
path = Form("%s/%s ", fGridDataDir.Data(), os->GetString().Data());
- if (!gGrid->Cd(path)) continue;
- CdWork();
+ if (!DirectoryExists(path)) continue;
+// CdWork();
if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml";
else file = Form("%s.xml", os->GetString().Data());
// If local collection file does not exist, create it via 'find' command.
cbase = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data()));
} else {
cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data()));
- printf(" Merging collection <%s> into masterjob input...\n", file.Data());
+ Printf(" Merging collection <%s> into masterjob input...", file.Data());
cbase->Add(cadd);
delete cadd;
}
Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", schunk.Data());
continue;
}
- printf("Exporting merged collection <%s> and copying to AliEn.\n", schunk.Data());
+ Printf("Exporting merged collection <%s> and copying to AliEn.", schunk.Data());
cbase->ExportXML(Form("file://%s", schunk.Data()),kFALSE,kFALSE, schunk, "Merged runs");
TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data()));
if (!FileExists(schunk)) {
// Process a full run range.
for (Int_t irun=fRunRange[0]; irun<=fRunRange[1]; irun++) {
path = Form("%s/%d ", fGridDataDir.Data(), irun);
- if (!gGrid->Cd(path)) continue;
- CdWork();
+ if (!DirectoryExists(path)) continue;
+// CdWork();
if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml";
else file = Form("%d.xml", irun);
if (FileExists(file) && fNrunsPerMaster<2 && !TestBit(AliAnalysisGrid::kTest)) {
// Check if the collection for the chunk exist locally.
Int_t nchunk = (nruns-1)/fNrunsPerMaster;
if (FileExists(fInputFiles->At(nchunk)->GetName())) continue;
- printf(" Merging collection <%s> into %d runs chunk...\n",file.Data(),fNrunsPerMaster);
+ Printf(" Merging collection <%s> into %d runs chunk...",file.Data(),fNrunsPerMaster);
if (((nruns-1)%fNrunsPerMaster) == 0) {
schunk = Form("%d", irun);
cbase = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data()));
Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", schunk.Data());
continue;
}
- printf("Exporting merged collection <%s> and copying to AliEn.\n", schunk.Data());
+ Printf("Exporting merged collection <%s> and copying to AliEn.", schunk.Data());
cbase->ExportXML(Form("file://%s", schunk.Data()),kFALSE,kFALSE, schunk, "Merged runs");
if (FileExists(schunk)) {
Info("CreateDataset", "\n##### Dataset %s exist. Skipping copy...", schunk.Data());
error = kTRUE;
} else {
if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("%s/%s", workdir.Data(), fGridOutputDir.Data());
- if (!gGrid->Cd(fGridOutputDir)) {
+ if (!DirectoryExists(fGridOutputDir)) {
if (gGrid->Mkdir(fGridOutputDir)) {
Info("CreateJDL", "\n##### Created alien output directory %s", fGridOutputDir.Data());
} else {
return kTRUE;
}
+//______________________________________________________________________________
+Bool_t AliAnalysisAlien::DirectoryExists(const char *dirname)
+{
+// Returns true if directory exists. Can be also a path.
+ if (!gGrid) return kFALSE;
+ // Check if dirname is a path
+ TString dirstripped = dirname;
+ dirstripped = dirstripped.Strip();
+ dirstripped = dirstripped.Strip(TString::kTrailing, '/');
+ TString dir = gSystem->BaseName(dirstripped);
+ dir += "/";
+ TString path = gSystem->DirName(dirstripped);
+ TGridResult *res = gGrid->Ls(path, "-F");
+ if (!res) return kFALSE;
+ TIter next(res);
+ TMap *map;
+ TObject *obj;
+ while ((map=dynamic_cast<TMap*>(next()))) {
+ obj = map->GetValue("name");
+ if (!obj) break;
+ if (dir == obj->GetName()) {
+ delete res;
+ return kTRUE;
+ }
+ }
+ delete res;
+ return kFALSE;
+}
+
//______________________________________________________________________________
void AliAnalysisAlien::CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags)
{
void AliAnalysisAlien::Print(Option_t *) const
{
// Print current plugin settings.
- printf("### AliEn analysis plugin current settings ###\n");
- printf("= Production mode:______________________________ %d\n", fProductionMode);
- printf("= Version of API requested: ____________________ %s\n", fAPIVersion.Data());
- printf("= Version of ROOT requested: ___________________ %s\n", fROOTVersion.Data());
- printf("= Version of AliRoot requested: ________________ %s\n", fAliROOTVersion.Data());
+ Printf("### AliEn analysis plugin current settings ###");
+ Printf("= Production mode:______________________________ %d", fProductionMode);
+ Printf("= Version of API requested: ____________________ %s", fAPIVersion.Data());
+ Printf("= Version of ROOT requested: ___________________ %s", fROOTVersion.Data());
+ Printf("= Version of AliRoot requested: ________________ %s", fAliROOTVersion.Data());
if (fUser.Length())
- printf("= User running the plugin: _____________________ %s\n", fUser.Data());
- printf("= Grid workdir relative to user $HOME: _________ %s\n", fGridWorkingDir.Data());
- printf("= Grid output directory relative to workdir: ___ %s\n", fGridOutputDir.Data());
- printf("= Data base directory path requested: __________ %s\n", fGridDataDir.Data());
- printf("= Data search pattern: _________________________ %s\n", fDataPattern.Data());
- printf("= Input data format: ___________________________ %s\n", fInputFormat.Data());
+ Printf("= User running the plugin: _____________________ %s", fUser.Data());
+ Printf("= Grid workdir relative to user $HOME: _________ %s", fGridWorkingDir.Data());
+ Printf("= Grid output directory relative to workdir: ___ %s", fGridOutputDir.Data());
+ Printf("= Data base directory path requested: __________ %s", fGridDataDir.Data());
+ Printf("= Data search pattern: _________________________ %s", fDataPattern.Data());
+ Printf("= Input data format: ___________________________ %s", fInputFormat.Data());
if (fRunNumbers.Length())
- printf("= Run numbers to be processed: _________________ %s\n", fRunNumbers.Data());
+ Printf("= Run numbers to be processed: _________________ %s", fRunNumbers.Data());
if (fRunRange[0])
- printf("= Run range to be processed: ___________________ %d-%d\n", fRunRange[0], fRunRange[1]);
+ Printf("= Run range to be processed: ___________________ %d-%d", fRunRange[0], fRunRange[1]);
if (!fRunRange[0] && !fRunNumbers.Length()) {
TIter next(fInputFiles);
TObject *obj;
TString list;
while ((obj=next())) list += obj->GetName();
- printf("= Input files to be processed: _________________ %s\n", list.Data());
+ Printf("= Input files to be processed: _________________ %s", list.Data());
}
if (TestBit(AliAnalysisGrid::kTest))
- printf("= Number of input files used in test mode: _____ %d\n", fNtestFiles);
- printf("= List of output files to be registered: _______ %s\n", fOutputFiles.Data());
- printf("= List of outputs going to be archived: ________ %s\n", fOutputArchive.Data());
- printf("= List of outputs that should not be merged: ___ %s\n", fMergeExcludes.Data());
- printf("=====================================================================\n");
- printf("= Job price: ___________________________________ %d\n", fPrice);
- printf("= Time to live (TTL): __________________________ %d\n", fTTL);
- printf("= Max files per subjob: ________________________ %d\n", fSplitMaxInputFileNumber);
+ Printf("= Number of input files used in test mode: _____ %d", fNtestFiles);
+ Printf("= List of output files to be registered: _______ %s", fOutputFiles.Data());
+ Printf("= List of outputs going to be archived: ________ %s", fOutputArchive.Data());
+ Printf("= List of outputs that should not be merged: ___ %s", fMergeExcludes.Data());
+ Printf("=====================================================================");
+ Printf("= Job price: ___________________________________ %d", fPrice);
+ Printf("= Time to live (TTL): __________________________ %d", fTTL);
+ Printf("= Max files per subjob: ________________________ %d", fSplitMaxInputFileNumber);
if (fMaxInitFailed>0)
- printf("= Max number of subjob fails to kill: __________ %d\n", fMaxInitFailed);
+ Printf("= Max number of subjob fails to kill: __________ %d", fMaxInitFailed);
if (fMasterResubmitThreshold>0)
- printf("= Resubmit master job if failed subjobs >_______ %d\n", fMasterResubmitThreshold);
+ Printf("= Resubmit master job if failed subjobs >_______ %d", fMasterResubmitThreshold);
if (fNrunsPerMaster>0)
- printf("= Number of runs per master job: _______________ %d\n", fNrunsPerMaster);
- printf("= Number of files in one chunk to be merged: ___ %d\n", fMaxMergeFiles);
- printf("= Name of the generated execution script: ______ %s\n",fExecutable.Data());
+ Printf("= Number of runs per master job: _______________ %d", fNrunsPerMaster);
+ Printf("= Number of files in one chunk to be merged: ___ %d", fMaxMergeFiles);
+ Printf("= Name of the generated execution script: ______ %s",fExecutable.Data());
if (fArguments.Length())
- printf("= Arguments for the execution script: __________ %s\n",fArguments.Data());
- printf("= Name of the generated analysis macro: ________ %s\n",fAnalysisMacro.Data());
- printf("= User analysis files to be deployed: __________ %s\n",fAnalysisSource.Data());
- printf("= Additional libs to be loaded or souces to be compiled runtime: <%s>\n",fAdditionalLibs.Data());
- printf("= Master jobs split mode: ______________________ %s\n",fSplitMode.Data());
+ Printf("= Arguments for the execution script: __________ %s",fArguments.Data());
+ Printf("= Name of the generated analysis macro: ________ %s",fAnalysisMacro.Data());
+ Printf("= User analysis files to be deployed: __________ %s",fAnalysisSource.Data());
+ Printf("= Additional libs to be loaded or souces to be compiled runtime: <%s>",fAdditionalLibs.Data());
+ Printf("= Master jobs split mode: ______________________ %s",fSplitMode.Data());
if (fDatasetName)
- printf("= Custom name for the dataset to be created: ___ %s\n", fDatasetName.Data());
- printf("= Name of the generated JDL: ___________________ %s\n", fJDLName.Data());
+ Printf("= Custom name for the dataset to be created: ___ %s", fDatasetName.Data());
+ Printf("= Name of the generated JDL: ___________________ %s", fJDLName.Data());
if (fIncludePath.Data())
- printf("= Include path for runtime task compilation: ___ %s\n", fIncludePath.Data());
+ Printf("= Include path for runtime task compilation: ___ %s", fIncludePath.Data());
if (fCloseSE.Length())
- printf("= Force job outputs to storage element: ________ %s\n", fCloseSE.Data());
+ Printf("= Force job outputs to storage element: ________ %s", fCloseSE.Data());
if (fFriendChainName.Length())
- printf("= Open friend chain file on worker: ____________ %s\n", fFriendChainName.Data());
+ Printf("= Open friend chain file on worker: ____________ %s", fFriendChainName.Data());
if (fPackages) {
TIter next(fPackages);
TObject *obj;
TString list;
while ((obj=next())) list += obj->GetName();
- printf("= Par files to be used: ________________________ %s\n", list.Data());
+ Printf("= Par files to be used: ________________________ %s", list.Data());
}
}
}
// Get the output path
if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("/%s/%s/%s", gGrid->GetHomeDirectory(), fGridWorkingDir.Data(), fGridOutputDir.Data());
- if (!gGrid->Cd(fGridOutputDir)) {
+ if (!DirectoryExists(fGridOutputDir)) {
Error("MergeOutputs", "Grid output directory %s not found. Terminate() will NOT be executed", fGridOutputDir.Data());
return kFALSE;
}
fMergeExcludes.Contains(output_file.Data())) continue;
// Perform a 'find' command in the output directory, looking for registered outputs
command = Form("find %s/ *%s", fGridOutputDir.Data(), output_file.Data());
- printf("command: %s\n", command.Data());
+ Printf("command: %s", command.Data());
TGridResult *res = gGrid->Command(command);
if (!res) continue;
TFileMerger *fm = 0;
}
output_chunk = output_file;
output_chunk.ReplaceAll(".root", Form("_%04d.root", count_chunk));
- printf("%s\n", output_chunk.Data());
+ Printf("%s", output_chunk.Data());
count_chunk++;
if (gSystem->AccessPathName(output_chunk)) continue;
// Merged file with chunks up to <count_chunk> found
- printf("Resume merging of <%s> from <%s>\n", output_file.Data(), output_chunk.Data());
+ Printf("Resume merging of <%s> from <%s>", output_file.Data(), output_chunk.Data());
previous_chunk = output_chunk;
break;
}
if (!fRunNumbers.Length() && !fRunRange[0]) {
// Submit a given xml or a set of runs
res = gGrid->Command(Form("submit %s", fJDLName.Data()));
- printf("*************************** %s\n",Form("submit %s", fJDLName.Data()));
+ Printf("*************************** %s",Form("submit %s", fJDLName.Data()));
if (res) {
const char *cjobId = res->GetKey(0,"jobId");
if (!cjobId) {
if (!fNsubmitted) ntosubmit = 1;
else {
TString status = GetJobStatus(firstmaster, lastmaster, nrunning, nwaiting, nerror, ndone);
- printf("=== master %d: %s\n", lastmaster, status.Data());
+ Printf("=== master %d: %s", lastmaster, status.Data());
// If last master not split, just return
if (status != "SPLIT") {iscalled = kFALSE; return;}
// No more than 100 waiting jobs
if (nwaiting>100) {iscalled = kFALSE; return;}
npermaster = (nrunning+nwaiting+nerror+ndone)/fNsubmitted;
if (npermaster) ntosubmit = (100-nwaiting)/npermaster;
- printf("=== WAITING(%d) RUNNING(%d) DONE(%d) OTHER(%d) NperMaster=%d => to submit %d jobs\n",
+ Printf("=== WAITING(%d) RUNNING(%d) DONE(%d) OTHER(%d) NperMaster=%d => to submit %d jobs",
nwaiting, nrunning, ndone, nerror, npermaster, ntosubmit);
}
Int_t nmasterjobs = fInputFiles->GetEntries();
if (fNsubmitted>=nmasterjobs) {iscalled = kFALSE; return;}
TString query;
query = Form("submit %s %s %03d", fJDLName.Data(), fInputFiles->At(fNsubmitted)->GetName(), fNsubmitted);
- printf("********* %s\n",query.Data());
+ Printf("********* %s",query.Data());
res = gGrid->Command(query);
if (res) {
TString cjobId1 = res->GetKey(0,"jobId");
if (copy) {
CdWork();
TString workdir = gGrid->GetHomeDirectory();
+ TString bindir = Form("%s/bin", workdir.Data());
+ if (!DirectoryExists(bindir)) gGrid->Mkdir(bindir);
workdir += fGridWorkingDir;
TString executable = Form("%s/bin/%s", gGrid->GetHomeDirectory(), fExecutable.Data());
if (FileExists(executable)) gGrid->Rm(executable);
out << "fi" << endl;
}
delete arr;
+ out << "if ! [ -f outputs_valid ] ; then" << endl;
+ out << " error=1" << endl;
+ out << " echo \"Output files were not validated by the analysis manager\" >> stdout" << endl;
+ out << " echo \"Output files were not validated by the analysis manager\" >> stderr" << endl;
+ out << "fi" << endl;
+
out << "if [ $error = 0 ] ; then" << endl;
out << " echo \"* ---------------- Job Validated ------------------*\"" << out_stream << endl;
out << "fi" << endl;
Int_t AliAnalysisManager::GetEntry(Long64_t entry, Int_t getall)
{
// Read one entry of the tree or a whole branch.
- if (fDebug > 0) printf("== AliAnalysisManager::GetEntry(%lld)\n", entry);
+ if (fDebug > 0) Printf("== AliAnalysisManager::GetEntry(%lld)", entry);
fCurrentEntry = entry;
return fTree ? fTree->GetTree()->GetEntry(entry, getall) : 0;
}
Bool_t init = kFALSE;
if (!tree) return kFALSE; // Should not happen - protected in selector caller
if (fDebug > 0) {
- printf("->AliAnalysisManager::Init(%s)\n", tree->GetName());
+ Printf("->AliAnalysisManager::Init(%s)", tree->GetName());
}
// Call InitTree of EventHandler
if (fOutputEventHandler) {
}
top->SetData(tree);
if (fDebug > 0) {
- printf("<-AliAnalysisManager::Init(%s)\n", tree->GetName());
+ Printf("<-AliAnalysisManager::Init(%s)", tree->GetName());
}
return kTRUE;
}
// The SlaveBegin() function is called after the Begin() function.
// When running with PROOF SlaveBegin() is called on each slave server.
// The tree argument is deprecated (on PROOF 0 is passed).
- if (fDebug > 0) printf("->AliAnalysisManager::SlaveBegin()\n");
+ if (fDebug > 0) Printf("->AliAnalysisManager::SlaveBegin()");
static Bool_t isCalled = kFALSE;
Bool_t init = kFALSE;
Bool_t initOK = kTRUE;
if (fOutputEventHandler) {
if (fMode == kProofAnalysis) {
// Merging AOD's in PROOF via TProofOutputFile
- if (fDebug > 1) printf(" Initializing AOD output file %s...\n", fOutputEventHandler->GetOutputFileName());
+ if (fDebug > 1) Printf(" Initializing AOD output file %s...", fOutputEventHandler->GetOutputFileName());
init = fOutputEventHandler->Init("proof");
if (!init) msg = "Failed to initialize output handler on worker";
} else {
task->CreateOutputObjects();
if (curdir) curdir->cd();
}
- if (fDebug > 0) printf("<-AliAnalysisManager::SlaveBegin()\n");
+ if (fDebug > 0) Printf("<-AliAnalysisManager::SlaveBegin()");
}
//______________________________________________________________________________
return kFALSE;
}
- if (fDebug > 0) printf("->AliAnalysisManager::Notify() file: %s\n", curfile->GetName());
+ if (fDebug > 0) Printf("->AliAnalysisManager::Notify() file: %s", curfile->GetName());
TIter next(fTasks);
AliAnalysisTask *task;
// Call Notify for all tasks
if (fMCtruthEventHandler) {
fMCtruthEventHandler->Notify(curfile->GetName());
}
- if (fDebug > 0) printf("<-AliAnalysisManager::Notify()\n");
+ if (fDebug > 0) Printf("<-AliAnalysisManager::Notify()");
return kTRUE;
}
// The entry is always the local entry number in the current tree.
// Assuming that fChain is the pointer to the TChain being processed,
// use fChain->GetTree()->GetEntry(entry).
- if (fDebug > 0) printf("->AliAnalysisManager::Process(%lld)\n", entry);
+ if (fDebug > 0) Printf("->AliAnalysisManager::Process(%lld)", entry);
if (fInputEventHandler) fInputEventHandler ->BeginEvent(entry);
if (fOutputEventHandler) fOutputEventHandler ->BeginEvent(entry);
GetEntry(entry);
ExecAnalysis();
- if (fDebug > 0) printf("<-AliAnalysisManager::Process()\n");
+ if (fDebug > 0) Printf("<-AliAnalysisManager::Process()");
return kTRUE;
}
{
// Pack all output data containers in the output list. Called at SlaveTerminate
// stage in PROOF case for each slave.
- if (fDebug > 0) printf("->AliAnalysisManager::PackOutput()\n");
+ if (fDebug > 0) Printf("->AliAnalysisManager::PackOutput()");
if (!target) {
Error("PackOutput", "No target. Aborting.");
return;
AliAnalysisTask *task;
while ((task=(AliAnalysisTask*)nexttask())) {
if (!task->IsPostEventLoop()) {
- if (fDebug > 0) printf("->FinishTaskOutput: task %s\n", task->GetName());
+ if (fDebug > 0) Printf("->FinishTaskOutput: task %s", task->GetName());
task->FinishTaskOutput();
- if (fDebug > 0) printf("<-FinishTaskOutput: task %s\n", task->GetName());
+ if (fDebug > 0) Printf("<-FinishTaskOutput: task %s", task->GetName());
}
}
const char *filename = output->GetFileName();
if (!(strcmp(filename, "default")) && fOutputEventHandler) {
isManagedByHandler = kTRUE;
- printf("#### Handler output. Extra: %s\n", fExtraFiles.Data());
+ Printf("#### Handler output. Extra: %s", fExtraFiles.Data());
filename = fOutputEventHandler->GetOutputFileName();
}
// Check if data was posted to this container. If not, issue an error.
if (!output->GetData() && !isManagedByHandler) {
- Error("PackOutput", "No data for output container %s. Forgot to PostData ?\n", output->GetName());
+ Error("PackOutput", "No data for output container %s. Forgot to PostData ?", output->GetName());
continue;
}
if (!output->IsSpecialOutput()) {
if (file) file->cd();
else file = new TFile(filename, "RECREATE");
if (file->IsZombie()) {
- Fatal("PackOutput", "Could not recreate file %s\n", filename);
+ Fatal("PackOutput", "Could not recreate file %s", filename);
return;
}
output->SetFile(file);
output->GetData()->Write();
}
}
- if (fDebug > 1) printf("PackOutput %s: memory merge, file resident output\n", output->GetName());
+ if (fDebug > 1) Printf("PackOutput %s: memory merge, file resident output", output->GetName());
if (fDebug > 2) {
- printf(" file %s listing content:\n", filename);
+ Printf(" file %s listing content:", filename);
file->ls();
}
file->Close();
if (opwd) opwd->cd();
} else {
// Memory-resident outputs
- if (fDebug > 1) printf("PackOutput %s: memory merge memory resident output\n", filename);
+ if (fDebug > 1) Printf("PackOutput %s: memory merge memory resident output", filename);
}
AliAnalysisDataWrapper *wrap = 0;
if (isManagedByHandler) {
continue;
}
TString outFilename = file->GetName();
- if (fDebug > 1) printf("PackOutput %s: special output\n", output->GetName());
+ if (fDebug > 1) Printf("PackOutput %s: special output", output->GetName());
if (isManagedByHandler) {
// Terminate IO for files managed by the output handler
if (file) file->Write();
if (file && fDebug > 2) {
- printf(" handled file %s listing content:\n", file->GetName());
+ Printf(" handled file %s listing content:", file->GetName());
file->ls();
}
fOutputEventHandler->TerminateIO();
}
file->Clear();
if (fDebug > 2) {
- printf(" file %s listing content:\n", output->GetFileName());
+ Printf(" file %s listing content:", output->GetFileName());
file->ls();
}
file->Close();
} else {
// No special location specified-> use TProofOutputFile as merging utility
// The file at this output slot must be opened in CreateOutputObjects
- if (fDebug > 1) printf(" File for container %s to be merged via file merger...\n", output->GetName());
+ if (fDebug > 1) Printf(" File for container %s to be merged via file merger...", output->GetName());
}
}
}
}
- if (fDebug > 0) printf("<-AliAnalysisManager::PackOutput: output list contains %d containers\n", target->GetSize());
+ if (fDebug > 0) Printf("<-AliAnalysisManager::PackOutput: output list contains %d containers", target->GetSize());
}
//______________________________________________________________________________
void AliAnalysisManager::ImportWrappers(TList *source)
{
// Import data in output containers from wrappers coming in source.
- if (fDebug > 0) printf("->AliAnalysisManager::ImportWrappers()\n");
+ if (fDebug > 0) Printf("->AliAnalysisManager::ImportWrappers()");
TIter next(fOutputs);
AliAnalysisDataContainer *cont;
AliAnalysisDataWrapper *wrap;
}
icont++;
if (fDebug > 1) {
- printf(" Importing data for container %s", cont->GetName());
- if (strlen(filename)) printf(" -> file %s\n", filename);
- else printf("\n");
+ Printf(" Importing data for container %s", cont->GetName());
+ if (strlen(filename)) Printf(" -> file %s", filename);
+ else Printf("");
}
cont->ImportData(wrap);
}
- if (fDebug > 0) printf("<-AliAnalysisManager::ImportWrappers(): %d containers imported\n", icont);
+ if (fDebug > 0) Printf("<-AliAnalysisManager::ImportWrappers(): %d containers imported", icont);
}
//______________________________________________________________________________
void AliAnalysisManager::UnpackOutput(TList *source)
{
// Called by AliAnalysisSelector::Terminate only on the client.
- if (fDebug > 0) printf("->AliAnalysisManager::UnpackOutput()\n");
+ if (fDebug > 0) Printf("->AliAnalysisManager::UnpackOutput()");
if (!source) {
Error("UnpackOutput", "No target. Aborting.");
return;
}
- if (fDebug > 1) printf(" Source list contains %d containers\n", source->GetSize());
+ if (fDebug > 1) Printf(" Source list contains %d containers", source->GetSize());
if (fMode == kProofAnalysis) ImportWrappers(source);
task->CheckNotify(kTRUE);
// If task is active, execute it
if (task->IsPostEventLoop() && task->IsActive()) {
- if (fDebug > 0) printf("== Executing post event loop task %s\n", task->GetName());
+ if (fDebug > 0) Printf("== Executing post event loop task %s", task->GetName());
task->ExecuteTask();
}
}
}
}
- if (fDebug > 0) printf("<-AliAnalysisManager::UnpackOutput()\n");
+ if (fDebug > 0) Printf("<-AliAnalysisManager::UnpackOutput()");
}
//______________________________________________________________________________
// The Terminate() function is the last function to be called during
// a query. It always runs on the client, it can be used to present
// the results graphically.
- if (fDebug > 0) printf("->AliAnalysisManager::Terminate()\n");
+ if (fDebug > 0) Printf("->AliAnalysisManager::Terminate()");
AliAnalysisTask *task;
TIter next(fTasks);
// Call Terminate() for tasks
if (fOutputEventHandler) filename = fOutputEventHandler->GetOutputFileName();
TFile *aodfile = (TFile*)gROOT->GetListOfFiles()->FindObject(filename);
if (aodfile) {
- if (fDebug > 1) printf("Writing output handler file: %s\n", filename);
+ if (fDebug > 1) Printf("Writing output handler file: %s", filename);
aodfile->Write();
continue;
}
if (file->IsZombie()) continue;
output->SetFile(file);
file->cd();
- if (fDebug > 1) printf(" writing output data %s to file %s\n", output->GetData()->GetName(), file->GetName());
+ if (fDebug > 1) Printf(" writing output data %s to file %s", output->GetData()->GetName(), file->GetName());
if (output->GetData()->InheritsFrom(TCollection::Class())) {
// If data is a collection, we set the name of the collection
// as the one of the container and we save as a single key.
delete tree;
}
if (cdir) cdir->cd();
+ }
+ // Validate the output files
+ if (ValidateOutputFiles()) {
+ ofstream out;
+ out.open("outputs_valid", ios::out);
+ out.close();
}
- if (fDebug > 0) printf("<-AliAnalysisManager::Terminate()\n");
+ if (fDebug > 0) Printf("<-AliAnalysisManager::Terminate()");
}
//______________________________________________________________________________
// kInputContainer = 1, used to store input data
// kOutputContainer = 2, used for posting results
if (fContainers->FindObject(name)) {
- Error("CreateContainer","A container named %s already defined !\n",name);
+ Error("CreateContainer","A container named %s already defined !",name);
return NULL;
}
AliAnalysisDataContainer *cont = new AliAnalysisDataContainer(name, datatype);
{
// Initialization of analysis chain of tasks. Should be called after all tasks
// and data containers are properly connected
- // Check for input/output containers
+ // Reset flag and remove valid_outputs file if exists
fInitOK = kFALSE;
+ if (!gSystem->AccessPathName("outputs_valid"))
+ gSystem->Unlink("outputs_valid");
// Check for top tasks (depending only on input data containers)
if (!fTasks->First()) {
Error("InitAnalysis", "Analysis has no tasks !");
Error("StartAnalysis","Analysis manager was not initialized !");
return;
}
- if (fDebug > 0) printf("StartAnalysis %s\n",GetName());
+ if (fDebug > 0) Printf("StartAnalysis %s",GetName());
TString anaType = type;
anaType.ToLower();
fMode = kLocalAnalysis;
break;
case kProofAnalysis:
if (!gROOT->GetListOfProofs() || !gROOT->GetListOfProofs()->GetEntries()) {
- printf("StartAnalysis: no PROOF!!!\n");
+ Error("StartAnalysis", "No PROOF!!! Aborting.");
return;
}
sprintf(line, "gProof->AddInput((TObject*)0x%lx);", (ULong_t)this);
cout << "===== RUNNING PROOF ANALYSIS " << GetName() << " ON CHAIN " << chain->GetName() << endl;
chain->Process("AliAnalysisSelector", "", nentries, firstentry);
} else {
- printf("StartAnalysis: no chain\n");
+ Error("StartAnalysis", "No chain!!! Aborting.");
return;
}
break;
Error("StartAnalysis","Analysis manager was not initialized !");
return;
}
- if (fDebug > 0) printf("StartAnalysis %s\n",GetName());
+ if (fDebug > 0) Printf("StartAnalysis %s",GetName());
TString anaType = type;
anaType.ToLower();
if (!anaType.Contains("proof")) {
}
if (!gROOT->GetListOfProofs() || !gROOT->GetListOfProofs()->GetEntries()) {
- printf("StartAnalysis: no PROOF!!!\n");
+ Error("StartAnalysis", "No PROOF!!! Aborting.");
return;
}
sprintf(line, "gProof->AddInput((TObject*)0x%lx);", (ULong_t)this);
return f;
}
sprintf(line, "TProofOutputFile *pf = new TProofOutputFile(\"%s\");", filename);
- if (fDebug > 1) printf("=== %s\n", line);
+ if (fDebug > 1) Printf("=== %s", line);
gROOT->ProcessLine(line);
sprintf(line, "pf->OpenFile(\"%s\");", option);
gROOT->ProcessLine(line);
if (fDebug > 1) {
gROOT->ProcessLine("pf->Print()");
- printf(" == proof file name: %s\n", gFile->GetName());
+ Printf(" == proof file name: %s", gFile->GetName());
}
sprintf(line, "((TList*)0x%lx)->Add(pf);",(ULong_t)fSelector->GetOutputList());
- if (fDebug > 1) printf("=== %s\n", line);
+ if (fDebug > 1) Printf("=== %s", line);
gROOT->ProcessLine(line);
return gFile;
}
type = "mix";
}
}
+
+//______________________________________________________________________________
+Bool_t AliAnalysisManager::ValidateOutputFiles() const
+{
+// Validate all output files.
+ TIter next(fOutputs);
+ AliAnalysisDataContainer *output;
+ TDirectory *cdir = gDirectory;
+ while ((output=(AliAnalysisDataContainer*)next())) {
+ TString filename = output->GetFileName();
+ if (filename == "default") {
+ if (!fOutputEventHandler) continue;
+ filename = fOutputEventHandler->GetOutputFileName();
+ }
+ // Check if the file is closed
+ TFile *file = (TFile*)gROOT->GetListOfFiles()->FindObject(filename);
+ if (file) {
+ Warning("ValidateOutputs", "File %s was not closed. Closing.", filename.Data());
+ file->Close();
+ }
+ file = TFile::Open(filename);
+ if (!file || file->IsZombie() || file->TestBit(TFile::kRecovered)) {
+ Error("ValidateOutputs", "Output file <%s> was not created or invalid", filename.Data());
+ cdir->cd();
+ return kFALSE;
+ }
+ file->Close();
+ }
+ cdir->cd();
+ return kTRUE;
+}
git://git.uio.no / u / mrichter / AliRoot.git / commitdiff