-//Replace User Task with your Add Task and appropriate parameters\r
-\r
-Bool_t SetupPar(const char *parfile);\r
-\r
-void runGridpPb(bool isAOD = kFALSE)\r
-{\r
- // Load common libraries\r
- gSystem->Load("libCore.so"); \r
- gSystem->Load("libTree.so");\r
- gSystem->Load("libGeom.so");\r
- gSystem->Load("libVMC.so");\r
- gSystem->Load("libPhysics.so");\r
- gSystem->Load("libMinuit.so"); \r
- gSystem->Load("libGui.so");\r
- gSystem->Load("libXMLParser.so");\r
- gSystem->Load("libSTEERBase.so");\r
- gSystem->Load("libESD.so");\r
- gSystem->Load("libCDB.so");\r
- gSystem->Load("libAOD.so");\r
- gSystem->Load("libANALYSIS.so");\r
- gSystem->Load("libANALYSISalice.so");\r
-\r
- //lib necessary for dielectron\r
- gSystem->Load("libCORRFW.so");\r
- gSystem->Load("libPWGflowBase.so");\r
- gSystem->Load("libPWGflowTasks.so");\r
-\r
- gSystem->Load("libTENDER"); \r
- gSystem->Load("libTENDERSupplies"); \r
- gSystem->Load("libProof.so");\r
- gSystem->Load("libRAWDatabase.so");\r
- gSystem->Load("libSTEER.so");\r
- gSystem->Load("libTOFbase.so");\r
-\r
- gSystem->Load("libTRDbase.so");\r
- gSystem->Load("libVZERObase.so");\r
- gSystem->Load("libPWGHFbase.so");\r
- gSystem->Load("libPWGHFhfe.so"); \r
- gSystem->Load("libTENDERSupplies.so"); \r
-\r
- // Load common libraries\r
-\r
- // Use AliRoot includes to compile our task\r
- gROOT->ProcessLine(".include $ALICE_ROOT/include");\r
- gROOT->ProcessLine(".include $ALICE_ROOT/PWGHF/");\r
- gROOT->ProcessLine(".include $ALICE_ROOT/PWGHF/hfe");\r
- gROOT->ProcessLine(".include $ALICE_ROOT/PWG/FLOW");\r
- gROOT->ProcessLine(".include $ALICE_ROOT/PWG/FLOW/Base");\r
- gROOT->ProcessLine(".include $ALICE_ROOT/PWG/FLOW/Tasks");\r
-\r
- // Create and configure the alien handler plugin\r
- gROOT->LoadMacro("CreateAlienHandlerpPb.C");\r
- AliAnalysisGrid *alienHandler = CreateAlienHandlerpPb(isAOD); \r
- if (!alienHandler) return;\r
-\r
- // Create the analysis manager\r
- AliAnalysisManager *mgr = new AliAnalysisManager("tpctofAnalysis");\r
-\r
- // Connect plug-in to the analysis manager\r
- mgr->SetGridHandler(alienHandler);\r
-\r
- TString macroname = "$ALICE_ROOT/ANALYSIS/macros/train/";\r
- if(isAOD)\r
- macroname += "AddAODHandler.C";\r
- else\r
- macroname += "AddESDHandler.C";\r
- gROOT->Macro(macroname.Data());\r
-\r
-\r
- //==== Physics Selection ====\r
- if(!isAOD){\r
- gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");\r
- AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection();\r
- }\r
- //==== Add tender ====\r
-\r
-// gROOT->LoadMacro("AddTaskTender.C");\r
-// AddTaskTender();\r
-\r
- //===== ADD PID RESPONSE: ===\r
-\r
- gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");\r
- AddTaskPIDResponse();\r
-\r
- //===== ADD CENTRALITY: ===\r
- gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskCentrality.C");\r
- AddTaskCentrality();\r
-\r
- //===== ADD TASK::\r
- gROOT->LoadMacro("$ALICE_ROOT/PWGHF/hfe/macros/AddTaskHFEpPb.C");\r
- AddTaskHFEpPb(isAOD);\r
- if(!isAOD){\r
- gROOT->LoadMacro("$ALICE_ROOT/PWGHF/hfe/macros/AddTaskHFEnpepPb.C");\r
- AddTaskHFEnpepPb();\r
- }\r
-\r
-\r
- // Enable debug printouts\r
- //mgr->SetDebugLevel(10);\r
-\r
- if (!mgr->InitAnalysis())\r
- return;\r
-\r
- mgr->PrintStatus();\r
- // Start analysis in grid.\r
- mgr->StartAnalysis("grid");\r
-};\r
+#include <fstream>
+#include <iostream>
+#include <string>
+
+TString g_aliroot_version;
+TString g_root_version;
+TString g_sample;
+TString g_plugin_mode;
+TString g_train_dir;
+TArrayI g_runlist;
+
+AliAnalysisAlien *CreateGridHandler(){
+ //
+ // Setup main settings of the Alien plugin
+ //
+ AliAnalysisAlien *plugin = new AliAnalysisAlien();
+ plugin->SetRunMode(g_plugin_mode.Data());
+ if(!g_plugin_mode.CompareTo("Terminate"))
+ plugin->SetMergeViaJDL(kFALSE);
+ else
+ plugin->SetMergeViaJDL(kTRUE);
+ plugin->SetOverwriteMode();
+ plugin->SetNtestFiles(1);
+
+ plugin->SetAPIVersion("V1.1x");
+ plugin->SetROOTVersion(g_root_version.Data());
+ plugin->SetAliROOTVersion(g_aliroot_version.Data());
+
+ plugin->SetOutputToRunNo();
+ plugin->AddIncludePath("-I. .I$ALIEN_ROOT/api/lib -I$ROOTSYS/lib -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_ROOT/PWGHF/ -I$ALICE_ROOT/PWGHF/hfe/macros -I$ALICE_ROOT/PWGHF/hfe -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/ANALYSIS/Tender -I$ALICE_ROOT/ANALYSIS/TenderSupplies -I$ALICE_ROOT/PWG/ -I$ALICE_ROOT/PWG/FLOW -I$ALICE_ROOT/PWG/Base -I$ALICE_ROOT/PWG/Tasks");
+ plugin->SetAdditionalLibs("libGui.so libXMLParser.so libSTEERBase.so libESD.so libAOD.so libCDB.so libANALYSIS.so libANALYSISalice.so libCORRFW.so libPWGflowBase.so libPWGflowTasks.so libPWGHFhfe.so libTENDER.so libProof.so libRAWDatabase.so libSTEER.so libTOFbase.so");
+
+ plugin->SetDefaultOutputs(kFALSE);
+ plugin->SetOutputFiles("AnalysisResults.root");
+ plugin->SetExecutableCommand("aliroot -b -q");
+ plugin->SetTTL(30000);
+ plugin->SetInputFormat("xml-single");
+ plugin->SetPrice(1);
+ plugin->SetSplitMode("se");
+ return plugin;
+}
+
+void SplitConfigEntry(const std::string &input, TString &key, TString &value){
+ //
+ // Decode key and value of a config entry
+ //
+ std::istringstream stream(input, istringstream::in);
+ std::string tmp;
+ stream >> tmp;
+ key = tmp.c_str();
+ stream >> tmp;
+ value = tmp.c_str();
+}
+
+void DecodeRunlist(const TString &val){
+ //
+ // Tokenize run list
+ //
+ TObjArray *runstrings = val.Tokenize(",");
+ TObjString *os;
+ TString runstr;
+ TIter runIter(runstrings);
+ g_runlist.Set(runstrings->GetEntries());
+ int nruns(0);
+ while((os = dynamic_cast<TObjString *>(runIter()))){
+ runstr = os->String();
+ g_runlist[nruns++] = runstr.Atoi();
+ }
+ delete runstrings;
+}
+
+bool IsMC(const TString &val){
+ //
+ // Determine whether sample is MC or Data
+ //
+ if(!val.CompareTo("MC")) return true;
+ return false;
+}
+
+bool FindDataSample(const TMap &lookup, TObjArray &sampleinfis){
+ //
+ // Find Data sample in the list of samples
+ //
+ TObjArray *entry = dynamic_cast<TObjArray *>(lookup.GetValue(g_sample.Data()));
+ if(!entry){
+ printf("Sample %s not found in the list of samples", g_sample.Data());
+ return false;
+ }
+ // Copy to output container
+ sampleinfis.SetOwner(kFALSE);
+ for(int ival = 0; ival < 4; ival++) sampleinfis.AddAt(entry->At(ival), ival);
+ return true;
+}
+
+bool GetData(TObjArray &in, TString &out, int pos){
+ //
+ // Helper function reading data string
+ //
+ TObjString *entry = dynamic_cast<TObjString *>(in.At(pos));
+ if(!entry){
+ printf("Entry at pos %d not a string\n", pos);
+ return false;
+ }
+ out = entry->String();
+ return true;
+}
+
+void AddSample(TMap &lookup,
+ const char *key, const char* datadir, const char * pattern, const char *sampletype, const char *dataformat){
+ //
+ // Add sample entry to the lookup table
+ //
+ TObjArray *infos = new TObjArray();
+ infos->AddAt(new TObjString(datadir), 0);
+ infos->AddAt(new TObjString(pattern), 1);
+ infos->AddAt(new TObjString(sampletype), 2);
+ infos->AddAt(new TObjString(dataformat), 3);
+ lookup.Add(new TObjString(key), infos);
+}
+
+void Generate_Sample_Lookup(TMap &lookup){
+ //
+ // Create Lookup table for each period
+ // Vector contains
+ // - path
+ // - pattern
+ // - MC/Data
+ // - ESD/AOD
+ //
+ AddSample(lookup, "LHC13b.pass2", "/alice/data/2013/LHC13b", "*/pass2/*/AliESDs.root", "Data", "ESD");
+ AddSample(lookup, "LHC13b.pass2.AOD", "/alice/data/2013/LHC13b", "*/pass2/AOD/*/AliAOD.root", "Data", "AOD");
+ AddSample(lookup, "LHC13b.pass2.AOD126", "/alice/data/2013/LHC13b", "*/pass2/AOD126/*/AliAOD.root", "Data", "AOD");
+ AddSample(lookup, "LHC13c.pass1", "/alice/data/2013/LHC13c/", "*/pass1/*/AliESDs.root", "Data", "ESD");
+ AddSample(lookup, "LHC13c.pass1.AOD", "/alice/data/2013/LHC13c/", "*/pass1/AOD/*/AliAOD.root", "Data", "AOD");
+ AddSample(lookup, "LHC13c.pass1.AOD126", "/alice/data/2013/LHC13c/", "*/pass1/AOD126/*/AliAOD.root", "Data", "AOD");
+ AddSample(lookup, "LHC13b2", "/alice/sim/2013/LHC13b2", "*/*/AliESDs.root", "MC", "ESD");
+ AddSample(lookup, "LHC13b2.AOD", "/alice/sim/2013/LHC13b2", "*/AliAOD.root", "MC", "AOD");
+ AddSample(lookup, "LHC13b2plus", "/alice/sim/2013/LHC13b2_plus", "*/*/AliESDs.root", "MC", "ESD");
+ AddSample(lookup, "LHC13b2plus.AOD", "/alice/sim/2013/LHC13b2_plus", "*/AliAOD.root", "MC", "AOD");
+ AddSample(lookup, "LHC13b3", "/alice/sim/2013/LHC13b3", "*/*/AliESDs.root", "MC", "ESD");
+ AddSample(lookup, "LHC13b3.AOD", "/alice/sim/2013/LHC13b3", "*/AliAOD.root", "MC", "AOD");
+ printf("Lookup table with sample information generated\n");
+}
+
+void ConfigParser(const char *configname){
+ //
+ // Parse configuration
+ //
+ std::ifstream in(configname);
+ std::string config;
+ TString key, value;
+ while(getline(in, config)){
+ SplitConfigEntry(config, key, value);
+ key.ToLower();
+ if(!key.CompareTo("aliroot")){
+ // Aliroot version
+ g_aliroot_version = value;
+ continue;
+ }
+ if(!key.CompareTo("root")){
+ // root version
+ g_root_version = value;
+ continue;
+ }
+ if(!key.CompareTo("sample")){
+ // sample name
+ g_sample = value;
+ continue;
+ }
+ if(!key.CompareTo("runlist")){
+ // Runlist
+ DecodeRunlist(value);
+ continue;
+ }
+ if(!key.CompareTo("mode")){
+ g_plugin_mode = value;
+ continue;
+ }
+ if(!key.CompareTo("traindir")){
+ g_train_dir = value;
+ continue;
+ }
+ printf("Unknown key: %s\n", key.Data());
+ }
+}
+
+bool MakeSample(AliAnalysisAlien *plugin, TMap &lookup){
+ //
+ // Fill Sample information (Data dir, pattern, run list) to the Alien plugin
+ //
+ TObjArray infos;
+ bool found = FindDataSample(lookup, infos);
+ if(!found){
+ printf("sample %s not found\n", g_sample.Data());
+ return false;
+ }
+ TString datadir, pattern, type;
+ GetData(infos, datadir, 0);
+ GetData(infos, pattern, 1);
+ GetData(infos, type, 2);
+ plugin->SetGridDataDir(datadir.Data());
+ plugin->SetDataPattern(pattern.Data());
+ if(!IsMC(type)) plugin->SetRunPrefix("000");
+ // Add runs to the sample
+ for(int irun = 0; irun < g_runlist.GetSize(); irun++){
+ plugin->AddRunNumber(g_runlist[irun]);
+ }
+ return true;
+}
+
+bool CreateTrainDir(AliAnalysisAlien *plugin, const TMap &lookup){
+ //
+ // Make train data dir name and JDL, C and sh file names
+ //
+ TObjArray infos;
+ bool found = FindDataSample(lookup, infos);
+ if(!found){
+ printf("sample %s not found\n", g_sample.Data());
+ return false;
+ }
+ TString type; GetData(infos, type, 2);
+
+ // check whether the train dir is already provided or needs to be specified
+ if(!g_train_dir.Length()){
+ // Query number of train runs before
+ const char *gridhome = gGrid->GetHomeDirectory();
+ const char gridoutdir[256];
+ sprintf(gridoutdir, "%sAnalysis_pPb/%s", gridhome, type.Data());
+ TGridResult *trainruns = gGrid->Ls(gridoutdir);
+ int nruns = trainruns->GetEntries();
+ // Get Date and time
+ TDatime time;
+ g_train_dir = Form("%d_%d%02d%02d_%02d%02d", nruns, time.GetYear(), time.GetMonth(), time.GetDay(), time.GetHour(), time.GetMinute());
+ }
+
+ plugin->SetGridWorkingDir(Form("Analysis_pPb/%s/%s", type.Data(), g_train_dir.Data()));
+ plugin->SetJDLName(Form("TPCTOFanalysispPb_%s_%s.jdl", type.Data(), g_train_dir.Data()));
+ plugin->SetExecutable(Form("TPCTOFanalysispPb_%s_%s.sh", type.Data(), g_train_dir.Data()));
+ plugin->SetAnalysisMacro(Form("TPCTOFanalysispPb_%s_%s.C", type.Data(), g_train_dir.Data()));
+ return true;
+}
+
+void SetupUtil(bool IsMC, bool isAOD){
+ //
+ // Setup utility packages
+ //
+ // 1. Physics Selection (ESD only)
+ // 2. Tender (ESD only)
+ // 3. PID Response (always)
+ // 4. Centrality Task (ESD only)
+ //
+
+ //==== Physics Selection ====
+ if(!isAOD){
+ gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
+ AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection(isMC);
+ }
+
+ //==== Add tender ====
+ if(!isAOD){
+ gROOT->LoadMacro("AddTaskTender.C");
+ AddTaskTender();
+ }
+
+ //===== ADD PID RESPONSE: ===
+ gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");
+ AddTaskPIDResponse();
+
+ //===== ADD CENTRALITY: ===
+ if(!isAOD){
+ gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskCentrality.C");
+ AddTaskCentrality();
+ }
+}
+
+void SetupHandlers(bool isMC, bool isAOD){
+ //
+ // Setup Handlers
+ //
+ TString macrobase = "$ALICE_ROOT/ANALYSIS/macros/train/";
+ TString macroname = macrobase;
+ if(isAOD)
+ macroname += "AddAODHandler.C";
+ else
+ macroname += "AddESDHandler.C";
+ gROOT->Macro(macroname.Data());
+
+ if(isMC){
+ // Add MC truth event handler
+ gROOT->LoadMacro(Form("%s/AddMCHandler.C", macrobase.Data()));
+ AddMCHandler();
+ }
+}
+
+void SetupHFEtask(bool isMC, bool isAOD){
+ gROOT->LoadMacro("$ALICE_ROOT/PWGHF/hfe/macros/AddTaskHFEpPb.C");
+ AddTaskHFEpPb(isAOD);
+ if(!isAOD){
+ gROOT->LoadMacro("$ALICE_ROOT/PWGHF/hfe/macros/AddTaskHFEnpepPb.C");
+ AddTaskHFEnpepPb();
+ }
+}
+
+void SetupTrain(const TMap &lookup){
+ //
+ // Setup train:
+ // Determine whether the trains run on MC or Data
+ // and ESDs or AODs and Configure Handlers, utils
+ // and HFE task according to this
+ //
+ bool isMC(false), isAOD(false);
+ TObjArray infos;
+ bool found = FindDataSample(lookup, infos);
+ if(!found) return;
+ TString type, mode;
+ GetData(infos, type, 2);
+ GetData(infos, mode, 3);
+ isMC = IsMC(type);
+ if(!mode.CompareTo("AOD")) isAOD = true;
+
+ SetupHandlers(isMC, isAOD);
+ SetupUtil(isMC, isAOD);
+ SetupHFEtask(isMC, isAOD);
+}
+
+void GenerateMergeConfigs(){
+ //
+ // Generate configurations for merging
+ // (MergeViaJDL and Terminate)
+ //
+
+ // Write config for MergeViaJDL
+ std::ofstream outMerge("configMerge.txt");
+ outMerge << "aliroot " << g_aliroot_version.Data() << std::endl;
+ outMerge << "root " << g_root_version.Data() << std::endl;
+ outMerge << "sample " << g_sample.Data() << std::endl;
+ outMerge << "mode MergeViaJDL\n";
+ outMerge << "traindir " << g_train_dir.Data() << std::endl;
+ outMerge << "runlist ";
+ for(int irun = 0; irun < g_runlist.GetSize()-1; irun++) outMerge << g_runlist[irun] << ",";
+ outMerge << g_runlist[g_runlist.GetSize()-1] << std::endl;
+ outMerge.close();
+ // Write config for Terminate
+ std::ofstream outTerminate("configTerminate.txt");
+ outMerge << "aliroot " << g_aliroot_version.Data() << std::endl;
+ outMerge << "root " << g_root_version.Data() << std::endl;
+ outMerge << "sample " << g_sample.Data() << std::endl;
+ outMerge << "mode Terminate\n";
+ outMerge << "traindir " << g_train_dir.Data() << std::endl;
+ outMerge << "runlist ";
+ for(int irun = 0; irun < g_runlist.GetSize()-1; irun++) outMerge << g_runlist[irun] << ",";
+ outMerge << g_runlist[g_runlist.GetSize()-1] << std::endl;
+ outMerge.close();
+
+ printf("Configurations for MergeViaJDL and terminate generated\n");
+}
+
+void runGridpPb(const char *config = "config.txt"){
+ //
+ // run analysis
+ //
+
+ TGrid::Connect("alien://");
+
+ // Create Lookup with sample information
+ TMap sampleinfos;
+ Generate_Sample_Lookup(sampleinfos);
+
+ ConfigParser(config);
+
+ // Configure alien plugin
+ AliAnalysisAlien *plugin = CreateGridHandler();
+ if(!CreateTrainDir(plugin, sampleinfos)){
+ printf("Cannot setup output directory\n");
+ return;
+ }
+ if(!MakeSample(plugin, sampleinfos)){
+ printf("Cannot create data sample\n");
+ return;
+ }
+ if(!g_plugin_mode.CompareTo("full")){
+ // full mode, creating config files for the merging stage
+ GenerateMergeConfigs();
+ }
+
+ AliAnalysisManager *mgr = new AliAnalysisManager("tpctofanalysis");
+ mgr->SetGridHandler(plugin);
+
+ SetupTrain(sampleinfos);
+
+ // Run train
+ if (!mgr->InitAnalysis()) return;
+ mgr->PrintStatus();
+ // Start analysis in grid.
+ mgr->StartAnalysis("grid");
+}
+
git://git.uio.no / u / mrichter / AliRoot.git / commitdiff