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c57f56b7 | 1 | /************************************************************************** |
2 | * Copyright(c) 1998-2007, ALICE Experiment at CERN, All rights reserved. * | |
3 | * * | |
4 | * Author: The ALICE Off-line Project. * | |
5 | * Contributors are mentioned in the code where appropriate. * | |
6 | * * | |
7 | * Permission to use, copy, modify and distribute this software and its * | |
8 | * documentation strictly for non-commercial purposes is hereby granted * | |
9 | * without fee, provided that the above copyright notice appears in all * | |
10 | * copies and that both the copyright notice and this permission notice * | |
11 | * appear in the supporting documentation. The authors make no claims * | |
12 | * about the suitability of this software for any purpose. It is * | |
13 | * provided "as is" without express or implied warranty. * | |
14 | **************************************************************************/ | |
15 | ||
16 | // Author: Mihaela Gheata, 01/09/2008 | |
17 | ||
18 | //============================================================================== | |
19 | // AliAnalysisAlien - AliEn utility class. Provides interface for creating | |
20 | // a personalized JDL, finding and creating a dataset. | |
21 | //============================================================================== | |
22 | ||
65eb22f8 | 23 | #include "AliAnalysisAlien.h" |
24 | ||
c57f56b7 | 25 | #include "Riostream.h" |
0f389141 | 26 | #include "TEnv.h" |
105631b5 | 27 | #include "TKey.h" |
7c2cd90a | 28 | #include "TBits.h" |
0f389141 | 29 | #include "TError.h" |
c57f56b7 | 30 | #include "TROOT.h" |
31 | #include "TSystem.h" | |
715da79c | 32 | #include "TInterpreter.h" |
c57f56b7 | 33 | #include "TFile.h" |
830acc4c | 34 | #include "TFileCollection.h" |
3bdcb562 | 35 | #include "TChain.h" |
c57f56b7 | 36 | #include "TObjString.h" |
37 | #include "TObjArray.h" | |
77f34eae | 38 | #include "TMacro.h" |
c57f56b7 | 39 | #include "TGrid.h" |
40 | #include "TGridResult.h" | |
41 | #include "TGridCollection.h" | |
42 | #include "TGridJDL.h" | |
d2a409b2 | 43 | #include "TGridJobStatusList.h" |
44 | #include "TGridJobStatus.h" | |
c57f56b7 | 45 | #include "TFileMerger.h" |
46 | #include "AliAnalysisManager.h" | |
77f34eae | 47 | #include "AliAnalysisTaskCfg.h" |
bb885a9e | 48 | #include "AliVEventHandler.h" |
49 | #include "AliAnalysisDataContainer.h" | |
65eb22f8 | 50 | #include "AliMultiInputEventHandler.h" |
c57f56b7 | 51 | |
c82bb898 | 52 | using std::ofstream; |
53 | using std::ifstream; | |
54 | using std::ios; | |
55 | using std::endl; | |
c57f56b7 | 56 | ClassImp(AliAnalysisAlien) |
6c395669 | 57 | #if 0 |
58 | ; | |
59 | #endif | |
c57f56b7 | 60 | |
6c395669 | 61 | namespace { |
62 | Bool_t copyLocal2Alien(const char* where, const char* loc, const char* rem) | |
63 | { | |
64 | TString sl(Form("file:%s", loc)); | |
65 | TString sr(Form("alien://%s", rem)); | |
66 | Bool_t ret = TFile::Cp(sl, sr); | |
67 | if (!ret) { | |
68 | Warning(where, "Failed to copy %s to %s", sl.Data(), sr.Data()); | |
69 | } | |
70 | return ret; | |
71 | } | |
72 | } | |
73 | ||
c57f56b7 | 74 | //______________________________________________________________________________ |
75 | AliAnalysisAlien::AliAnalysisAlien() | |
76 | :AliAnalysisGrid(), | |
77 | fGridJDL(NULL), | |
0f389141 | 78 | fMergingJDL(NULL), |
c57f56b7 | 79 | fPrice(0), |
80 | fTTL(0), | |
81 | fSplitMaxInputFileNumber(0), | |
82 | fMaxInitFailed(0), | |
83 | fMasterResubmitThreshold(0), | |
bb885a9e | 84 | fNtestFiles(0), |
319593fb | 85 | fNrunsPerMaster(0), |
16a4353c | 86 | fMaxMergeFiles(0), |
b3e07543 | 87 | fMaxMergeStages(0), |
d2a409b2 | 88 | fNsubmitted(0), |
a3e84053 | 89 | fProductionMode(0), |
cd11251e | 90 | fOutputToRunNo(0), |
0f389141 | 91 | fMergeViaJDL(0), |
92 | fFastReadOption(0), | |
e1c22e21 | 93 | fOverwriteMode(1), |
149d288c | 94 | fNreplicas(2), |
3bdcb562 | 95 | fNproofWorkers(0), |
27734f0e | 96 | fNproofWorkersPerSlave(0), |
3bdcb562 | 97 | fProofReset(0), |
715da79c | 98 | fNMCevents(0), |
99 | fNMCjobs(0), | |
c57f56b7 | 100 | fRunNumbers(), |
101 | fExecutable(), | |
0a1c1f7f | 102 | fExecutableCommand(), |
c57f56b7 | 103 | fArguments(), |
631c0b05 | 104 | fExecutableArgs(), |
c57f56b7 | 105 | fAnalysisMacro(), |
106 | fAnalysisSource(), | |
d3b18c4c | 107 | fValidationScript(), |
d5c6455a | 108 | fAdditionalRootLibs(), |
c57f56b7 | 109 | fAdditionalLibs(), |
715da79c | 110 | fGeneratorLibs(), |
c57f56b7 | 111 | fSplitMode(), |
112 | fAPIVersion(), | |
113 | fROOTVersion(), | |
114 | fAliROOTVersion(), | |
648174cf | 115 | fExternalPackages(), |
c57f56b7 | 116 | fUser(), |
117 | fGridWorkingDir(), | |
118 | fGridDataDir(), | |
119 | fDataPattern(), | |
120 | fGridOutputDir(), | |
121 | fOutputArchive(), | |
122 | fOutputFiles(), | |
123 | fInputFormat(), | |
e7c71df0 | 124 | fDatasetName(), |
c57f56b7 | 125 | fJDLName(), |
d3b18c4c | 126 | fTerminateFiles(), |
bb885a9e | 127 | fMergeExcludes(), |
37d21c01 | 128 | fRegisterExcludes(), |
f965131e | 129 | fIncludePath(), |
bb885a9e | 130 | fCloseSE(), |
0df6ccf2 | 131 | fFriendChainName(), |
c6cb3634 | 132 | fJobTag(), |
648174cf | 133 | fOutputSingle(), |
5fce53f4 | 134 | fRunPrefix(), |
3bdcb562 | 135 | fProofCluster(), |
136 | fProofDataSet(), | |
137 | fFileForTestMode(), | |
3bdcb562 | 138 | fAliRootMode(), |
d88e4159 | 139 | fProofProcessOpt(), |
f47d5cb4 | 140 | fMergeDirName(), |
4e5c5506 | 141 | fInputFiles(0), |
28ce6c9c | 142 | fPackages(0), |
77f34eae | 143 | fModules(0), |
d88e4159 | 144 | fProofParam(), |
a41b2882 | 145 | fDropToShell(true), |
715da79c | 146 | fMCLoop(false), |
a41b2882 | 147 | fGridJobIDs(""), |
148 | fGridStages(""), | |
780ec36d | 149 | fFriendLibs(""), |
150 | fTreeName() | |
c57f56b7 | 151 | { |
152 | // Dummy ctor. | |
153 | SetDefaults(); | |
154 | } | |
155 | ||
156 | //______________________________________________________________________________ | |
157 | AliAnalysisAlien::AliAnalysisAlien(const char *name) | |
158 | :AliAnalysisGrid(name), | |
159 | fGridJDL(NULL), | |
0f389141 | 160 | fMergingJDL(NULL), |
c57f56b7 | 161 | fPrice(0), |
162 | fTTL(0), | |
163 | fSplitMaxInputFileNumber(0), | |
164 | fMaxInitFailed(0), | |
165 | fMasterResubmitThreshold(0), | |
bb885a9e | 166 | fNtestFiles(0), |
319593fb | 167 | fNrunsPerMaster(0), |
16a4353c | 168 | fMaxMergeFiles(0), |
b3e07543 | 169 | fMaxMergeStages(0), |
d2a409b2 | 170 | fNsubmitted(0), |
a3e84053 | 171 | fProductionMode(0), |
cd11251e | 172 | fOutputToRunNo(0), |
0f389141 | 173 | fMergeViaJDL(0), |
174 | fFastReadOption(0), | |
e1c22e21 | 175 | fOverwriteMode(1), |
149d288c | 176 | fNreplicas(2), |
3bdcb562 | 177 | fNproofWorkers(0), |
27734f0e | 178 | fNproofWorkersPerSlave(0), |
3bdcb562 | 179 | fProofReset(0), |
715da79c | 180 | fNMCevents(0), |
181 | fNMCjobs(0), | |
c57f56b7 | 182 | fRunNumbers(), |
183 | fExecutable(), | |
0a1c1f7f | 184 | fExecutableCommand(), |
c57f56b7 | 185 | fArguments(), |
631c0b05 | 186 | fExecutableArgs(), |
c57f56b7 | 187 | fAnalysisMacro(), |
188 | fAnalysisSource(), | |
d3b18c4c | 189 | fValidationScript(), |
d5c6455a | 190 | fAdditionalRootLibs(), |
c57f56b7 | 191 | fAdditionalLibs(), |
715da79c | 192 | fGeneratorLibs(), |
c57f56b7 | 193 | fSplitMode(), |
194 | fAPIVersion(), | |
195 | fROOTVersion(), | |
196 | fAliROOTVersion(), | |
648174cf | 197 | fExternalPackages(), |
c57f56b7 | 198 | fUser(), |
199 | fGridWorkingDir(), | |
200 | fGridDataDir(), | |
201 | fDataPattern(), | |
202 | fGridOutputDir(), | |
203 | fOutputArchive(), | |
204 | fOutputFiles(), | |
205 | fInputFormat(), | |
e7c71df0 | 206 | fDatasetName(), |
c57f56b7 | 207 | fJDLName(), |
d3b18c4c | 208 | fTerminateFiles(), |
bb885a9e | 209 | fMergeExcludes(), |
37d21c01 | 210 | fRegisterExcludes(), |
f965131e | 211 | fIncludePath(), |
bb885a9e | 212 | fCloseSE(), |
0df6ccf2 | 213 | fFriendChainName(), |
c6cb3634 | 214 | fJobTag(), |
648174cf | 215 | fOutputSingle(), |
5fce53f4 | 216 | fRunPrefix(), |
3bdcb562 | 217 | fProofCluster(), |
218 | fProofDataSet(), | |
219 | fFileForTestMode(), | |
3bdcb562 | 220 | fAliRootMode(), |
d88e4159 | 221 | fProofProcessOpt(), |
f47d5cb4 | 222 | fMergeDirName(), |
4e5c5506 | 223 | fInputFiles(0), |
28ce6c9c | 224 | fPackages(0), |
77f34eae | 225 | fModules(0), |
d88e4159 | 226 | fProofParam(), |
0ad3ea1f | 227 | fDropToShell(true), |
715da79c | 228 | fMCLoop(false), |
0ad3ea1f | 229 | fGridJobIDs(""), |
a41b2882 | 230 | fGridStages(""), |
780ec36d | 231 | fFriendLibs(""), |
232 | fTreeName() | |
c57f56b7 | 233 | { |
234 | // Default ctor. | |
235 | SetDefaults(); | |
236 | } | |
237 | ||
238 | //______________________________________________________________________________ | |
239 | AliAnalysisAlien::AliAnalysisAlien(const AliAnalysisAlien& other) | |
240 | :AliAnalysisGrid(other), | |
241 | fGridJDL(NULL), | |
0f389141 | 242 | fMergingJDL(NULL), |
c57f56b7 | 243 | fPrice(other.fPrice), |
244 | fTTL(other.fTTL), | |
245 | fSplitMaxInputFileNumber(other.fSplitMaxInputFileNumber), | |
246 | fMaxInitFailed(other.fMaxInitFailed), | |
247 | fMasterResubmitThreshold(other.fMasterResubmitThreshold), | |
bb885a9e | 248 | fNtestFiles(other.fNtestFiles), |
319593fb | 249 | fNrunsPerMaster(other.fNrunsPerMaster), |
16a4353c | 250 | fMaxMergeFiles(other.fMaxMergeFiles), |
b3e07543 | 251 | fMaxMergeStages(other.fMaxMergeStages), |
d2a409b2 | 252 | fNsubmitted(other.fNsubmitted), |
a3e84053 | 253 | fProductionMode(other.fProductionMode), |
cd11251e | 254 | fOutputToRunNo(other.fOutputToRunNo), |
0f389141 | 255 | fMergeViaJDL(other.fMergeViaJDL), |
256 | fFastReadOption(other.fFastReadOption), | |
257 | fOverwriteMode(other.fOverwriteMode), | |
149d288c | 258 | fNreplicas(other.fNreplicas), |
3bdcb562 | 259 | fNproofWorkers(other.fNproofWorkers), |
27734f0e | 260 | fNproofWorkersPerSlave(other.fNproofWorkersPerSlave), |
3bdcb562 | 261 | fProofReset(other.fProofReset), |
715da79c | 262 | fNMCevents(other.fNMCevents), |
263 | fNMCjobs(other.fNMCjobs), | |
c57f56b7 | 264 | fRunNumbers(other.fRunNumbers), |
265 | fExecutable(other.fExecutable), | |
0a1c1f7f | 266 | fExecutableCommand(other.fExecutableCommand), |
c57f56b7 | 267 | fArguments(other.fArguments), |
631c0b05 | 268 | fExecutableArgs(other.fExecutableArgs), |
c57f56b7 | 269 | fAnalysisMacro(other.fAnalysisMacro), |
270 | fAnalysisSource(other.fAnalysisSource), | |
d3b18c4c | 271 | fValidationScript(other.fValidationScript), |
d5c6455a | 272 | fAdditionalRootLibs(other.fAdditionalRootLibs), |
c57f56b7 | 273 | fAdditionalLibs(other.fAdditionalLibs), |
715da79c | 274 | fGeneratorLibs(other.fGeneratorLibs), |
c57f56b7 | 275 | fSplitMode(other.fSplitMode), |
276 | fAPIVersion(other.fAPIVersion), | |
277 | fROOTVersion(other.fROOTVersion), | |
278 | fAliROOTVersion(other.fAliROOTVersion), | |
648174cf | 279 | fExternalPackages(other.fExternalPackages), |
c57f56b7 | 280 | fUser(other.fUser), |
281 | fGridWorkingDir(other.fGridWorkingDir), | |
282 | fGridDataDir(other.fGridDataDir), | |
283 | fDataPattern(other.fDataPattern), | |
284 | fGridOutputDir(other.fGridOutputDir), | |
285 | fOutputArchive(other.fOutputArchive), | |
286 | fOutputFiles(other.fOutputFiles), | |
287 | fInputFormat(other.fInputFormat), | |
e7c71df0 | 288 | fDatasetName(other.fDatasetName), |
c57f56b7 | 289 | fJDLName(other.fJDLName), |
d3b18c4c | 290 | fTerminateFiles(other.fTerminateFiles), |
bb885a9e | 291 | fMergeExcludes(other.fMergeExcludes), |
37d21c01 | 292 | fRegisterExcludes(other.fRegisterExcludes), |
f965131e | 293 | fIncludePath(other.fIncludePath), |
bb885a9e | 294 | fCloseSE(other.fCloseSE), |
0df6ccf2 | 295 | fFriendChainName(other.fFriendChainName), |
c6cb3634 | 296 | fJobTag(other.fJobTag), |
648174cf | 297 | fOutputSingle(other.fOutputSingle), |
5fce53f4 | 298 | fRunPrefix(other.fRunPrefix), |
3bdcb562 | 299 | fProofCluster(other.fProofCluster), |
300 | fProofDataSet(other.fProofDataSet), | |
301 | fFileForTestMode(other.fFileForTestMode), | |
3bdcb562 | 302 | fAliRootMode(other.fAliRootMode), |
d88e4159 | 303 | fProofProcessOpt(other.fProofProcessOpt), |
f47d5cb4 | 304 | fMergeDirName(other.fMergeDirName), |
4e5c5506 | 305 | fInputFiles(0), |
28ce6c9c | 306 | fPackages(0), |
77f34eae | 307 | fModules(0), |
d88e4159 | 308 | fProofParam(), |
0ad3ea1f | 309 | fDropToShell(other.fDropToShell), |
715da79c | 310 | fMCLoop(other.fMCLoop), |
0ad3ea1f | 311 | fGridJobIDs(other.fGridJobIDs), |
a41b2882 | 312 | fGridStages(other.fGridStages), |
780ec36d | 313 | fFriendLibs(other.fFriendLibs), |
314 | fTreeName(other.fTreeName) | |
c57f56b7 | 315 | { |
316 | // Copy ctor. | |
317 | fGridJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); | |
0f389141 | 318 | fMergingJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); |
a8739e8a | 319 | fRunRange[0] = other.fRunRange[0]; |
320 | fRunRange[1] = other.fRunRange[1]; | |
c57f56b7 | 321 | if (other.fInputFiles) { |
322 | fInputFiles = new TObjArray(); | |
323 | TIter next(other.fInputFiles); | |
324 | TObject *obj; | |
325 | while ((obj=next())) fInputFiles->Add(new TObjString(obj->GetName())); | |
326 | fInputFiles->SetOwner(); | |
327 | } | |
4e5c5506 | 328 | if (other.fPackages) { |
329 | fPackages = new TObjArray(); | |
330 | TIter next(other.fPackages); | |
331 | TObject *obj; | |
332 | while ((obj=next())) fPackages->Add(new TObjString(obj->GetName())); | |
333 | fPackages->SetOwner(); | |
334 | } | |
77f34eae | 335 | if (other.fModules) { |
336 | fModules = new TObjArray(); | |
337 | fModules->SetOwner(); | |
338 | TIter next(other.fModules); | |
339 | AliAnalysisTaskCfg *mod, *crt; | |
340 | while ((crt=(AliAnalysisTaskCfg*)next())) { | |
341 | mod = new AliAnalysisTaskCfg(*crt); | |
342 | fModules->Add(mod); | |
343 | } | |
344 | } | |
c57f56b7 | 345 | } |
346 | ||
347 | //______________________________________________________________________________ | |
348 | AliAnalysisAlien::~AliAnalysisAlien() | |
349 | { | |
350 | // Destructor. | |
77f34eae | 351 | delete fGridJDL; |
352 | delete fMergingJDL; | |
353 | delete fInputFiles; | |
354 | delete fPackages; | |
355 | delete fModules; | |
28ce6c9c | 356 | fProofParam.DeleteAll(); |
c57f56b7 | 357 | } |
358 | ||
359 | //______________________________________________________________________________ | |
360 | AliAnalysisAlien &AliAnalysisAlien::operator=(const AliAnalysisAlien& other) | |
361 | { | |
362 | // Assignment. | |
363 | if (this != &other) { | |
364 | AliAnalysisGrid::operator=(other); | |
365 | fGridJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); | |
0f389141 | 366 | fMergingJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); |
c57f56b7 | 367 | fPrice = other.fPrice; |
368 | fTTL = other.fTTL; | |
369 | fSplitMaxInputFileNumber = other.fSplitMaxInputFileNumber; | |
370 | fMaxInitFailed = other.fMaxInitFailed; | |
371 | fMasterResubmitThreshold = other.fMasterResubmitThreshold; | |
bb885a9e | 372 | fNtestFiles = other.fNtestFiles; |
a3e84053 | 373 | fNrunsPerMaster = other.fNrunsPerMaster; |
374 | fMaxMergeFiles = other.fMaxMergeFiles; | |
b3e07543 | 375 | fMaxMergeStages = other.fMaxMergeStages; |
a3e84053 | 376 | fNsubmitted = other.fNsubmitted; |
377 | fProductionMode = other.fProductionMode; | |
cd11251e | 378 | fOutputToRunNo = other.fOutputToRunNo; |
0f389141 | 379 | fMergeViaJDL = other.fMergeViaJDL; |
380 | fFastReadOption = other.fFastReadOption; | |
381 | fOverwriteMode = other.fOverwriteMode; | |
149d288c | 382 | fNreplicas = other.fNreplicas; |
3bdcb562 | 383 | fNproofWorkers = other.fNproofWorkers; |
27734f0e | 384 | fNproofWorkersPerSlave = other.fNproofWorkersPerSlave; |
3bdcb562 | 385 | fProofReset = other.fProofReset; |
715da79c | 386 | fNMCevents = other.fNMCevents; |
387 | fNMCjobs = other.fNMCjobs; | |
c57f56b7 | 388 | fRunNumbers = other.fRunNumbers; |
389 | fExecutable = other.fExecutable; | |
0a1c1f7f | 390 | fExecutableCommand = other.fExecutableCommand; |
c57f56b7 | 391 | fArguments = other.fArguments; |
631c0b05 | 392 | fExecutableArgs = other.fExecutableArgs; |
c57f56b7 | 393 | fAnalysisMacro = other.fAnalysisMacro; |
394 | fAnalysisSource = other.fAnalysisSource; | |
d3b18c4c | 395 | fValidationScript = other.fValidationScript; |
d5c6455a | 396 | fAdditionalRootLibs = other.fAdditionalRootLibs; |
c57f56b7 | 397 | fAdditionalLibs = other.fAdditionalLibs; |
715da79c | 398 | fGeneratorLibs = other.fGeneratorLibs; |
c57f56b7 | 399 | fSplitMode = other.fSplitMode; |
400 | fAPIVersion = other.fAPIVersion; | |
401 | fROOTVersion = other.fROOTVersion; | |
402 | fAliROOTVersion = other.fAliROOTVersion; | |
648174cf | 403 | fExternalPackages = other.fExternalPackages; |
c57f56b7 | 404 | fUser = other.fUser; |
405 | fGridWorkingDir = other.fGridWorkingDir; | |
406 | fGridDataDir = other.fGridDataDir; | |
407 | fDataPattern = other.fDataPattern; | |
408 | fGridOutputDir = other.fGridOutputDir; | |
409 | fOutputArchive = other.fOutputArchive; | |
410 | fOutputFiles = other.fOutputFiles; | |
411 | fInputFormat = other.fInputFormat; | |
e7c71df0 | 412 | fDatasetName = other.fDatasetName; |
c57f56b7 | 413 | fJDLName = other.fJDLName; |
d3b18c4c | 414 | fTerminateFiles = other.fTerminateFiles; |
bb885a9e | 415 | fMergeExcludes = other.fMergeExcludes; |
37d21c01 | 416 | fRegisterExcludes = other.fRegisterExcludes; |
f965131e | 417 | fIncludePath = other.fIncludePath; |
bb885a9e | 418 | fCloseSE = other.fCloseSE; |
0df6ccf2 | 419 | fFriendChainName = other.fFriendChainName; |
c6cb3634 | 420 | fJobTag = other.fJobTag; |
648174cf | 421 | fOutputSingle = other.fOutputSingle; |
5fce53f4 | 422 | fRunPrefix = other.fRunPrefix; |
3bdcb562 | 423 | fProofCluster = other.fProofCluster; |
424 | fProofDataSet = other.fProofDataSet; | |
425 | fFileForTestMode = other.fFileForTestMode; | |
3bdcb562 | 426 | fAliRootMode = other.fAliRootMode; |
d88e4159 | 427 | fProofProcessOpt = other.fProofProcessOpt; |
f47d5cb4 | 428 | fMergeDirName = other.fMergeDirName; |
d88e4159 | 429 | fDropToShell = other.fDropToShell; |
715da79c | 430 | fMCLoop = other.fMCLoop; |
0ad3ea1f | 431 | fGridJobIDs = other.fGridJobIDs; |
432 | fGridStages = other.fGridStages; | |
a41b2882 | 433 | fFriendLibs = other.fFriendLibs; |
780ec36d | 434 | fTreeName = other.fTreeName; |
c57f56b7 | 435 | if (other.fInputFiles) { |
436 | fInputFiles = new TObjArray(); | |
437 | TIter next(other.fInputFiles); | |
438 | TObject *obj; | |
439 | while ((obj=next())) fInputFiles->Add(new TObjString(obj->GetName())); | |
440 | fInputFiles->SetOwner(); | |
441 | } | |
4e5c5506 | 442 | if (other.fPackages) { |
443 | fPackages = new TObjArray(); | |
444 | TIter next(other.fPackages); | |
445 | TObject *obj; | |
446 | while ((obj=next())) fPackages->Add(new TObjString(obj->GetName())); | |
447 | fPackages->SetOwner(); | |
448 | } | |
77f34eae | 449 | if (other.fModules) { |
450 | fModules = new TObjArray(); | |
451 | fModules->SetOwner(); | |
452 | TIter next(other.fModules); | |
453 | AliAnalysisTaskCfg *mod, *crt; | |
454 | while ((crt=(AliAnalysisTaskCfg*)next())) { | |
455 | mod = new AliAnalysisTaskCfg(*crt); | |
456 | fModules->Add(mod); | |
457 | } | |
458 | } | |
c57f56b7 | 459 | } |
460 | return *this; | |
461 | } | |
462 | ||
37d21c01 | 463 | //______________________________________________________________________________ |
464 | void AliAnalysisAlien::AddAdditionalLibrary(const char *name) | |
465 | { | |
466 | // Add a single additional library to be loaded. Extension must be present. | |
467 | TString lib(name); | |
468 | if (!lib.Contains(".")) { | |
469 | Error("AddAdditionalLibrary", "Extension not defined for %s", name); | |
470 | return; | |
471 | } | |
472 | if (fAdditionalLibs.Contains(name)) { | |
473 | Warning("AddAdditionalLibrary", "Library %s already added.", name); | |
474 | return; | |
475 | } | |
476 | if (!fAdditionalLibs.IsNull()) fAdditionalLibs += " "; | |
477 | fAdditionalLibs += lib; | |
478 | } | |
479 | ||
77f34eae | 480 | //______________________________________________________________________________ |
481 | void AliAnalysisAlien::AddModule(AliAnalysisTaskCfg *module) | |
482 | { | |
483 | // Adding a module. Checks if already existing. Becomes owned by this. | |
484 | if (!module) return; | |
485 | if (GetModule(module->GetName())) { | |
486 | Error("AddModule", "A module having the same name %s already added", module->GetName()); | |
487 | return; | |
488 | } | |
489 | if (!fModules) { | |
490 | fModules = new TObjArray(); | |
491 | fModules->SetOwner(); | |
492 | } | |
493 | fModules->Add(module); | |
494 | } | |
495 | ||
496 | //______________________________________________________________________________ | |
497 | void AliAnalysisAlien::AddModules(TObjArray *list) | |
498 | { | |
499 | // Adding a list of modules. Checks if already existing. Becomes owned by this. | |
500 | TIter next(list); | |
501 | AliAnalysisTaskCfg *module; | |
502 | while ((module = (AliAnalysisTaskCfg*)next())) AddModule(module); | |
503 | } | |
504 | ||
505 | //______________________________________________________________________________ | |
506 | Bool_t AliAnalysisAlien::CheckDependencies() | |
507 | { | |
508 | // Check if all dependencies are satisfied. Reorder modules if needed. | |
509 | Int_t nmodules = GetNmodules(); | |
510 | if (!nmodules) { | |
511 | Warning("CheckDependencies", "No modules added yet to check their dependencies"); | |
512 | return kTRUE; | |
513 | } | |
514 | AliAnalysisTaskCfg *mod = 0; | |
515 | AliAnalysisTaskCfg *dep = 0; | |
516 | TString depname; | |
517 | Int_t i, j, k; | |
518 | for (i=0; i<nmodules; i++) { | |
519 | mod = (AliAnalysisTaskCfg*) fModules->At(i); | |
520 | Int_t ndeps = mod->GetNdeps(); | |
521 | Int_t istart = i; | |
522 | for (j=0; j<ndeps; j++) { | |
523 | depname = mod->GetDependency(j); | |
524 | dep = GetModule(depname); | |
525 | if (!dep) { | |
526 | Error("CheckDependencies","Dependency %s not added for module %s", | |
527 | depname.Data(), mod->GetName()); | |
528 | return kFALSE; | |
529 | } | |
530 | if (dep->NeedsDependency(mod->GetName())) { | |
531 | Error("CheckDependencies","Modules %s and %s circularly depend on each other", | |
532 | mod->GetName(), dep->GetName()); | |
533 | return kFALSE; | |
534 | } | |
535 | Int_t idep = fModules->IndexOf(dep); | |
536 | // The dependency task must come first | |
537 | if (idep>i) { | |
538 | // Remove at idep and move all objects below up one slot | |
539 | // down to index i included. | |
540 | fModules->RemoveAt(idep); | |
3e40fd4c | 541 | for (k=idep-1; k>=i; k--) fModules->AddAt(fModules->RemoveAt(k),k+1); |
77f34eae | 542 | fModules->AddAt(dep, i++); |
543 | } | |
544 | //Redo from istart if dependencies were inserted | |
545 | if (i>istart) i=istart-1; | |
546 | } | |
547 | } | |
548 | return kTRUE; | |
549 | } | |
550 | ||
3e40fd4c | 551 | //______________________________________________________________________________ |
552 | AliAnalysisManager *AliAnalysisAlien::CreateAnalysisManager(const char *name, const char *filename) | |
553 | { | |
554 | // Create the analysis manager and optionally execute the macro in filename. | |
555 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); | |
715da79c | 556 | if (mgr) { |
557 | mgr->SetMCLoop(fMCLoop); | |
558 | return mgr; | |
559 | } | |
3e40fd4c | 560 | mgr = new AliAnalysisManager(name); |
561 | mgr->SetGridHandler((AliAnalysisGrid*)this); | |
715da79c | 562 | mgr->SetMCLoop(fMCLoop); |
3e40fd4c | 563 | if (strlen(filename)) { |
564 | TString line = gSystem->ExpandPathName(filename); | |
565 | line.Prepend(".x "); | |
566 | gROOT->ProcessLine(line.Data()); | |
567 | } | |
568 | return mgr; | |
569 | } | |
570 | ||
77f34eae | 571 | //______________________________________________________________________________ |
572 | Int_t AliAnalysisAlien::GetNmodules() const | |
573 | { | |
574 | // Get number of modules. | |
575 | if (!fModules) return 0; | |
576 | return fModules->GetEntries(); | |
577 | } | |
578 | ||
579 | //______________________________________________________________________________ | |
580 | AliAnalysisTaskCfg *AliAnalysisAlien::GetModule(const char *name) | |
581 | { | |
582 | // Get a module by name. | |
583 | if (!fModules) return 0; | |
584 | return (AliAnalysisTaskCfg*)fModules->FindObject(name); | |
585 | } | |
586 | ||
587 | //______________________________________________________________________________ | |
588 | Bool_t AliAnalysisAlien::LoadModule(AliAnalysisTaskCfg *mod) | |
589 | { | |
590 | // Load a given module. | |
591 | if (mod->IsLoaded()) return kTRUE; | |
192ddca2 | 592 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); |
593 | if (!mgr) { | |
594 | Error("LoadModule", "No analysis manager created yet. Use CreateAnalysisManager first."); | |
595 | return kFALSE; | |
596 | } | |
77f34eae | 597 | Int_t ndeps = mod->GetNdeps(); |
598 | TString depname; | |
599 | for (Int_t j=0; j<ndeps; j++) { | |
600 | depname = mod->GetDependency(j); | |
601 | AliAnalysisTaskCfg *dep = GetModule(depname); | |
602 | if (!dep) { | |
603 | Error("LoadModule","Dependency %s not existing for module %s", | |
604 | depname.Data(), mod->GetName()); | |
605 | return kFALSE; | |
606 | } | |
607 | if (!LoadModule(dep)) { | |
608 | Error("LoadModule","Dependency %s for module %s could not be loaded", | |
609 | depname.Data(), mod->GetName()); | |
610 | return kFALSE; | |
611 | } | |
612 | } | |
613 | // Load libraries for the module | |
614 | if (!mod->CheckLoadLibraries()) { | |
615 | Error("LoadModule", "Cannot load all libraries for module %s", mod->GetName()); | |
616 | return kFALSE; | |
617 | } | |
192ddca2 | 618 | // Check if a custom file name was requested |
619 | if (strlen(mod->GetOutputFileName())) mgr->SetCommonFileName(mod->GetOutputFileName()); | |
620 | ||
621 | // Check if a custom terminate file name was requested | |
622 | if (strlen(mod->GetTerminateFileName())) { | |
623 | if (!fTerminateFiles.IsNull()) fTerminateFiles += ","; | |
624 | fTerminateFiles += mod->GetTerminateFileName(); | |
625 | } | |
626 | ||
77f34eae | 627 | // Execute the macro |
628 | if (mod->ExecuteMacro()<0) { | |
629 | Error("LoadModule", "Executing the macro %s with arguments: %s for module %s returned a negative value", | |
630 | mod->GetMacroName(), mod->GetMacroArgs(), mod->GetName()); | |
631 | return kFALSE; | |
632 | } | |
633 | // Configure dependencies | |
634 | if (mod->GetConfigMacro() && mod->ExecuteConfigMacro()<0) { | |
635 | Error("LoadModule", "There was an error executing the deps config macro %s for module %s", | |
636 | mod->GetConfigMacro()->GetTitle(), mod->GetName()); | |
637 | return kFALSE; | |
638 | } | |
5e8c7c22 | 639 | // Adjust extra libraries |
640 | Int_t nlibs = mod->GetNlibs(); | |
641 | TString lib; | |
642 | for (Int_t i=0; i<nlibs; i++) { | |
643 | lib = mod->GetLibrary(i); | |
5e8c7c22 | 644 | lib = Form("lib%s.so", lib.Data()); |
c9d6bd12 | 645 | if (fAdditionalLibs.Contains(lib)) continue; |
5e8c7c22 | 646 | if (!fAdditionalLibs.IsNull()) fAdditionalLibs += " "; |
647 | fAdditionalLibs += lib; | |
648 | } | |
77f34eae | 649 | return kTRUE; |
650 | } | |
651 | ||
139fe6ba | 652 | //______________________________________________________________________________ |
653 | Bool_t AliAnalysisAlien::GenerateTrain(const char *name) | |
654 | { | |
655 | // Generate the full train. | |
656 | fAdditionalLibs = ""; | |
657 | if (!LoadModules()) return kFALSE; | |
658 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); | |
659 | if (!mgr->InitAnalysis()) return kFALSE; | |
d512d8e2 | 660 | mgr->RunLocalInit(); |
139fe6ba | 661 | mgr->PrintStatus(); |
662 | Int_t productionMode = fProductionMode; | |
663 | SetProductionMode(); | |
664 | TString macro = fAnalysisMacro; | |
665 | TString executable = fExecutable; | |
666 | TString validation = fValidationScript; | |
667 | TString execCommand = fExecutableCommand; | |
668 | SetAnalysisMacro(Form("%s.C", name)); | |
669 | SetExecutable(Form("%s.sh", name)); | |
a8e31fb0 | 670 | // SetExecutableCommand("aliroot -b -q "); |
139fe6ba | 671 | SetValidationScript(Form("%s_validation.sh", name)); |
672 | StartAnalysis(); | |
673 | SetProductionMode(productionMode); | |
674 | fAnalysisMacro = macro; | |
675 | fExecutable = executable; | |
676 | fExecutableCommand = execCommand; | |
677 | fValidationScript = validation; | |
678 | return kTRUE; | |
679 | } | |
680 | ||
77f34eae | 681 | //______________________________________________________________________________ |
21ca8e59 | 682 | Bool_t AliAnalysisAlien::GenerateTest(const char *name, const char *modname) |
77f34eae | 683 | { |
684 | // Generate test macros for a single module or for the full train. | |
5e8c7c22 | 685 | fAdditionalLibs = ""; |
77f34eae | 686 | if (strlen(modname)) { |
21ca8e59 | 687 | if (!CheckDependencies()) return kFALSE; |
688 | AliAnalysisTaskCfg *mod = GetModule(modname); | |
689 | if (!mod) { | |
690 | Error("GenerateTest", "cannot generate test for inexistent module %s", modname); | |
691 | return kFALSE; | |
692 | } | |
693 | if (!LoadModule(mod)) return kFALSE; | |
a41b2882 | 694 | if (!LoadFriendLibs()) return kFALSE; |
21ca8e59 | 695 | } else if (!LoadModules()) return kFALSE; |
696 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); | |
697 | if (!mgr->InitAnalysis()) return kFALSE; | |
d512d8e2 | 698 | mgr->RunLocalInit(); |
21ca8e59 | 699 | mgr->PrintStatus(); |
700 | SetLocalTest(kTRUE); | |
701 | Int_t productionMode = fProductionMode; | |
702 | SetProductionMode(); | |
703 | TString macro = fAnalysisMacro; | |
704 | TString executable = fExecutable; | |
705 | TString validation = fValidationScript; | |
706 | TString execCommand = fExecutableCommand; | |
707 | SetAnalysisMacro(Form("%s.C", name)); | |
708 | SetExecutable(Form("%s.sh", name)); | |
d66aa2a9 | 709 | fOutputFiles = GetListOfFiles("outaod"); |
710 | // Add extra files registered to the analysis manager | |
711 | TString extra = GetListOfFiles("ext"); | |
712 | if (!extra.IsNull()) { | |
713 | extra.ReplaceAll(".root", "*.root"); | |
714 | if (!fOutputFiles.IsNull()) fOutputFiles += ","; | |
715 | fOutputFiles += extra; | |
716 | } | |
a8e31fb0 | 717 | // SetExecutableCommand("aliroot -b -q "); |
21ca8e59 | 718 | SetValidationScript(Form("%s_validation.sh", name)); |
719 | WriteAnalysisFile(); | |
720 | WriteAnalysisMacro(); | |
721 | WriteExecutable(); | |
722 | WriteValidationScript(); | |
ffbe06b9 | 723 | WriteMergingMacro(); |
724 | WriteMergeExecutable(); | |
725 | WriteValidationScript(kTRUE); | |
21ca8e59 | 726 | SetLocalTest(kFALSE); |
727 | SetProductionMode(productionMode); | |
728 | fAnalysisMacro = macro; | |
729 | fExecutable = executable; | |
730 | fExecutableCommand = execCommand; | |
731 | fValidationScript = validation; | |
77f34eae | 732 | return kTRUE; |
733 | } | |
734 | ||
735 | //______________________________________________________________________________ | |
736 | Bool_t AliAnalysisAlien::LoadModules() | |
737 | { | |
738 | // Load all modules by executing the AddTask macros. Checks first the dependencies. | |
5e8c7c22 | 739 | fAdditionalLibs = ""; |
21ca8e59 | 740 | Int_t nmodules = GetNmodules(); |
741 | if (!nmodules) { | |
742 | Warning("LoadModules", "No module to be loaded"); | |
743 | return kTRUE; | |
744 | } | |
3e40fd4c | 745 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); |
746 | if (!mgr) { | |
747 | Error("LoadModules", "No analysis manager created yet. Use CreateAnalysisManager first."); | |
748 | return kFALSE; | |
749 | } | |
77f34eae | 750 | if (!CheckDependencies()) return kFALSE; |
21ca8e59 | 751 | nmodules = GetNmodules(); |
77f34eae | 752 | AliAnalysisTaskCfg *mod; |
21ca8e59 | 753 | for (Int_t imod=0; imod<nmodules; imod++) { |
754 | mod = (AliAnalysisTaskCfg*)fModules->At(imod); | |
77f34eae | 755 | if (!LoadModule(mod)) return kFALSE; |
756 | } | |
a41b2882 | 757 | // Load additional friend libraries |
758 | return LoadFriendLibs(); | |
77f34eae | 759 | } |
760 | ||
a41b2882 | 761 | //______________________________________________________________________________ |
762 | Bool_t AliAnalysisAlien::LoadFriendLibs() const | |
763 | { | |
764 | // Load libraries required for reading friends. | |
765 | if (fFriendLibs.Length()) { | |
766 | TObjArray *list = 0; | |
767 | TString lib; | |
768 | if (fFriendLibs.Contains(",")) list = fFriendLibs.Tokenize(","); | |
769 | else list = fFriendLibs.Tokenize(" "); | |
770 | for (Int_t ilib=0; ilib<list->GetEntriesFast(); ilib++) { | |
771 | lib = list->At(ilib)->GetName(); | |
772 | lib.ReplaceAll(".so",""); | |
773 | lib.ReplaceAll(" ",""); | |
774 | if (lib.BeginsWith("lib")) lib.Remove(0, 3); | |
775 | lib.Prepend("lib"); | |
776 | Int_t loaded = strlen(gSystem->GetLibraries(lib,"",kFALSE)); | |
777 | if (!loaded) loaded = gSystem->Load(lib); | |
778 | if (loaded < 0) { | |
779 | Error("LoadModules", "Cannot load library for friends %s", lib.Data()); | |
780 | return kFALSE; | |
781 | } | |
782 | } | |
783 | delete list; | |
784 | } | |
785 | return kTRUE; | |
786 | } | |
787 | ||
74013535 | 788 | //______________________________________________________________________________ |
789 | void AliAnalysisAlien::SetRunPrefix(const char *prefix) | |
790 | { | |
791 | // Set the run number format. Can be a prefix or a format like "%09d" | |
792 | fRunPrefix = prefix; | |
793 | if (!fRunPrefix.Contains("%")) fRunPrefix += "%d"; | |
794 | } | |
795 | ||
f965131e | 796 | //______________________________________________________________________________ |
797 | void AliAnalysisAlien::AddIncludePath(const char *path) | |
798 | { | |
799 | // Add include path in the remote analysis macro. | |
800 | TString p(path); | |
801 | if (p.Contains("-I")) fIncludePath += Form("%s ", path); | |
802 | else fIncludePath += Form("-I%s ", path); | |
803 | } | |
804 | ||
c57f56b7 | 805 | //______________________________________________________________________________ |
806 | void AliAnalysisAlien::AddRunNumber(Int_t run) | |
807 | { | |
808 | // Add a run number to the list of runs to be processed. | |
809 | if (fRunNumbers.Length()) fRunNumbers += " "; | |
74013535 | 810 | fRunNumbers += Form(fRunPrefix.Data(), run); |
c57f56b7 | 811 | } |
812 | ||
98690895 | 813 | //______________________________________________________________________________ |
814 | void AliAnalysisAlien::AddRunList(const char* runList) | |
815 | { | |
816 | // Add several runs into the list of runs; they are expected to be separated by a blank character. | |
817 | TString sList = runList; | |
818 | TObjArray *list = sList.Tokenize(" "); | |
819 | Int_t n = list->GetEntries(); | |
820 | for (Int_t i = 0; i < n; i++) { | |
821 | TObjString *os = (TObjString*)list->At(i); | |
822 | AddRunNumber(os->GetString().Atoi()); | |
823 | } | |
824 | delete list; | |
825 | } | |
826 | ||
ee75cfc3 | 827 | //______________________________________________________________________________ |
828 | void AliAnalysisAlien::AddRunNumber(const char* run) | |
829 | { | |
830 | // Add a run number to the list of runs to be processed. | |
7aa5d539 | 831 | TString runs = run; |
832 | TObjString *os; | |
833 | TObjArray *arr = runs.Tokenize(" "); | |
834 | TIter next(arr); | |
835 | TString prefix; | |
836 | prefix.Append(fRunPrefix, fRunPrefix.Index("%d")); | |
837 | while ((os=(TObjString*)next())){ | |
838 | if (fRunNumbers.Length()) fRunNumbers += " "; | |
839 | fRunNumbers += Form("%s%s", prefix.Data(), os->GetString().Data()); | |
840 | } | |
841 | delete arr; | |
ee75cfc3 | 842 | } |
843 | ||
c57f56b7 | 844 | //______________________________________________________________________________ |
845 | void AliAnalysisAlien::AddDataFile(const char *lfn) | |
846 | { | |
847 | // Adds a data file to the input to be analysed. The file should be a valid LFN | |
848 | // or point to an existing file in the alien workdir. | |
849 | if (!fInputFiles) fInputFiles = new TObjArray(); | |
850 | fInputFiles->Add(new TObjString(lfn)); | |
851 | } | |
648174cf | 852 | |
853 | //______________________________________________________________________________ | |
854 | void AliAnalysisAlien::AddExternalPackage(const char *package) | |
855 | { | |
856 | // Adds external packages w.r.t to the default ones (root,aliroot and gapi) | |
857 | if (fExternalPackages) fExternalPackages += " "; | |
858 | fExternalPackages += package; | |
859 | } | |
860 | ||
c57f56b7 | 861 | //______________________________________________________________________________ |
862 | Bool_t AliAnalysisAlien::Connect() | |
863 | { | |
864 | // Try to connect to AliEn. User needs a valid token and /tmp/gclient_env_$UID sourced. | |
865 | if (gGrid && gGrid->IsConnected()) return kTRUE; | |
d3b18c4c | 866 | if (fProductionMode) return kTRUE; |
c57f56b7 | 867 | if (!gGrid) { |
868 | Info("Connect", "Trying to connect to AliEn ..."); | |
869 | TGrid::Connect("alien://"); | |
870 | } | |
871 | if (!gGrid || !gGrid->IsConnected()) { | |
872 | Error("Connect", "Did not managed to connect to AliEn. Make sure you have a valid token."); | |
873 | return kFALSE; | |
874 | } | |
875 | fUser = gGrid->GetUser(); | |
876 | Info("Connect", "\n##### Connected to AliEn as user %s. Setting analysis user to <%s>", fUser.Data(), fUser.Data()); | |
877 | return kTRUE; | |
878 | } | |
879 | ||
880 | //______________________________________________________________________________ | |
881 | void AliAnalysisAlien::CdWork() | |
882 | { | |
883 | // Check validity of alien workspace. Create directory if possible. | |
884 | if (!Connect()) { | |
885 | Error("CdWork", "Alien connection required"); | |
886 | return; | |
887 | } | |
888 | TString homedir = gGrid->GetHomeDirectory(); | |
889 | TString workdir = homedir + fGridWorkingDir; | |
923e2ca5 | 890 | if (DirectoryExists(workdir)) { |
891 | gGrid->Cd(workdir); | |
892 | return; | |
893 | } | |
894 | // Work directory not existing - create it | |
895 | gGrid->Cd(homedir); | |
b93f8109 | 896 | if (gGrid->Mkdir(workdir, "-p")) { |
923e2ca5 | 897 | gGrid->Cd(fGridWorkingDir); |
d3b18c4c | 898 | Info("CdWork", "\n##### Created alien working directory %s", fGridWorkingDir.Data()); |
923e2ca5 | 899 | } else { |
d3b18c4c | 900 | Warning("CdWork", "Working directory %s cannot be created.\n Using %s instead.", |
923e2ca5 | 901 | workdir.Data(), homedir.Data()); |
902 | fGridWorkingDir = ""; | |
903 | } | |
c57f56b7 | 904 | } |
905 | ||
348be253 | 906 | //______________________________________________________________________________ |
907 | Bool_t AliAnalysisAlien::CheckFileCopy(const char *alienpath) | |
908 | { | |
909 | // Check if file copying is possible. | |
d3b18c4c | 910 | if (fProductionMode) return kTRUE; |
b5ae4fe0 | 911 | TString salienpath(alienpath); |
912 | if (salienpath.Contains(" ")) { | |
913 | Error("CheckFileCopy", "path: <%s> contains blancs - FIX IT !",alienpath); | |
914 | return kFALSE; | |
915 | } | |
348be253 | 916 | if (!Connect()) { |
917 | Error("CheckFileCopy", "Not connected to AliEn. File copying cannot be tested."); | |
918 | return kFALSE; | |
919 | } | |
d3339be3 | 920 | Info("CheckFileCopy", "Checking possibility to copy files to your AliEn home directory... \ |
921 | \n +++ NOTE: You can disable this via: plugin->SetCheckCopy(kFALSE);"); | |
348be253 | 922 | // Check if alien_CLOSE_SE is defined |
923 | TString closeSE = gSystem->Getenv("alien_CLOSE_SE"); | |
924 | if (!closeSE.IsNull()) { | |
925 | Info("CheckFileCopy", "Your current close storage is pointing to: \ | |
926 | \n alien_CLOSE_SE = \"%s\"", closeSE.Data()); | |
927 | } else { | |
928 | Warning("CheckFileCopy", "Your current close storage is empty ! Depending on your location, file copying may fail."); | |
929 | } | |
930 | // Check if grid directory exists. | |
931 | if (!DirectoryExists(alienpath)) { | |
932 | Error("CheckFileCopy", "Alien path %s does not seem to exist", alienpath); | |
933 | return kFALSE; | |
934 | } | |
b5ae4fe0 | 935 | TString stest = "plugin_test_copy"; |
936 | TFile f(stest, "RECREATE"); | |
348be253 | 937 | // User may not have write permissions to current directory |
938 | if (f.IsZombie()) { | |
939 | Error("CheckFileCopy", "Cannot create local test file. Do you have write access to current directory: <%s> ?", | |
940 | gSystem->WorkingDirectory()); | |
941 | return kFALSE; | |
942 | } | |
943 | f.Close(); | |
b5ae4fe0 | 944 | if (FileExists(Form("alien://%s/%s",alienpath, stest.Data()))) gGrid->Rm(Form("alien://%s/%s",alienpath, stest.Data())); |
945 | if (!TFile::Cp(stest.Data(), Form("alien://%s/%s",alienpath, stest.Data()))) { | |
d3339be3 | 946 | Error("CheckFileCopy", "Cannot copy files to Alien destination: <%s> This may be temporary, or: \ |
348be253 | 947 | \n# 1. Make sure you have write permissions there. If this is the case: \ |
948 | \n# 2. Check the storage availability at: http://alimonitor.cern.ch/stats?page=SE/table \ | |
949 | \n# Do: export alien_CLOSE_SE=\"working_disk_SE\" \ | |
950 | \n# To make this permanent put in in your .bashrc (in .alienshrc is not enough) \ | |
951 | \n# Redo token: rm /tmp/x509up_u$UID then: alien-token-init <username>", alienpath); | |
b5ae4fe0 | 952 | gSystem->Unlink(stest.Data()); |
348be253 | 953 | return kFALSE; |
954 | } | |
b5ae4fe0 | 955 | gSystem->Unlink(stest.Data()); |
956 | gGrid->Rm(Form("%s/%s",alienpath,stest.Data())); | |
d3339be3 | 957 | Info("CheckFileCopy", "### ...SUCCESS ###"); |
348be253 | 958 | return kTRUE; |
959 | } | |
960 | ||
c57f56b7 | 961 | //______________________________________________________________________________ |
962 | Bool_t AliAnalysisAlien::CheckInputData() | |
963 | { | |
964 | // Check validity of input data. If necessary, create xml files. | |
d3b18c4c | 965 | if (fProductionMode) return kTRUE; |
a8739e8a | 966 | if (!fInputFiles && !fRunNumbers.Length() && !fRunRange[0]) { |
d2a409b2 | 967 | if (!fGridDataDir.Length()) { |
968 | Error("CkeckInputData", "AliEn path to base data directory must be set.\n = Use: SetGridDataDir()"); | |
969 | return kFALSE; | |
970 | } | |
9f020952 | 971 | if (fMergeViaJDL) { |
972 | Error("CheckInputData", "Merging via jdl works only with run numbers, run range or provided xml"); | |
973 | return kFALSE; | |
974 | } | |
d2a409b2 | 975 | Info("CheckInputData", "Analysis will make a single xml for base data directory %s",fGridDataDir.Data()); |
23329835 | 976 | if (fDataPattern.Contains("tag") && TestBit(AliAnalysisGrid::kTest)) |
977 | TObject::SetBit(AliAnalysisGrid::kUseTags, kTRUE); // ADDED (fix problem in determining the tag usage in test mode) | |
d2a409b2 | 978 | return kTRUE; |
c57f56b7 | 979 | } |
980 | // Process declared files | |
a2f5fc01 | 981 | Bool_t isCollection = kFALSE; |
982 | Bool_t isXml = kFALSE; | |
983 | Bool_t useTags = kFALSE; | |
c57f56b7 | 984 | Bool_t checked = kFALSE; |
d3b18c4c | 985 | if (!TestBit(AliAnalysisGrid::kTest)) CdWork(); |
c57f56b7 | 986 | TString file; |
987 | TString workdir = gGrid->GetHomeDirectory(); | |
988 | workdir += fGridWorkingDir; | |
989 | if (fInputFiles) { | |
990 | TObjString *objstr; | |
991 | TIter next(fInputFiles); | |
992 | while ((objstr=(TObjString*)next())) { | |
993 | file = workdir; | |
994 | file += "/"; | |
995 | file += objstr->GetString(); | |
996 | // Store full lfn path | |
997 | if (FileExists(file)) objstr->SetString(file); | |
998 | else { | |
999 | file = objstr->GetName(); | |
1000 | if (!FileExists(objstr->GetName())) { | |
1001 | Error("CheckInputData", "Data file %s not found or not in your working dir: %s", | |
1002 | objstr->GetName(), workdir.Data()); | |
1003 | return kFALSE; | |
1004 | } | |
1005 | } | |
1006 | Bool_t iscoll, isxml, usetags; | |
1007 | CheckDataType(file, iscoll, isxml, usetags); | |
1008 | if (!checked) { | |
1009 | checked = kTRUE; | |
a2f5fc01 | 1010 | isCollection = iscoll; |
1011 | isXml = isxml; | |
1012 | useTags = usetags; | |
1013 | TObject::SetBit(AliAnalysisGrid::kUseTags, useTags); | |
c57f56b7 | 1014 | } else { |
a2f5fc01 | 1015 | if ((iscoll != isCollection) || (isxml != isXml) || (usetags != useTags)) { |
c57f56b7 | 1016 | Error("CheckInputData", "Some conflict was found in the types of inputs"); |
1017 | return kFALSE; | |
1018 | } | |
1019 | } | |
1020 | } | |
1021 | } | |
1022 | // Process requested run numbers | |
a8739e8a | 1023 | if (!fRunNumbers.Length() && !fRunRange[0]) return kTRUE; |
c57f56b7 | 1024 | // Check validity of alien data directory |
1025 | if (!fGridDataDir.Length()) { | |
1026 | Error("CkeckInputData", "AliEn path to base data directory must be set.\n = Use: SetGridDataDir()"); | |
1027 | return kFALSE; | |
1028 | } | |
923e2ca5 | 1029 | if (!DirectoryExists(fGridDataDir)) { |
c57f56b7 | 1030 | Error("CheckInputData", "Data directory %s not existing.", fGridDataDir.Data()); |
1031 | return kFALSE; | |
1032 | } | |
a2f5fc01 | 1033 | if (isCollection) { |
c57f56b7 | 1034 | Error("CheckInputData", "You are using raw AliEn collections as input. Cannot process run numbers."); |
1035 | return kFALSE; | |
1036 | } | |
1037 | ||
a2f5fc01 | 1038 | if (checked && !isXml) { |
c57f56b7 | 1039 | Error("CheckInputData", "Cannot mix processing of full runs with non-xml files"); |
1040 | return kFALSE; | |
1041 | } | |
1042 | // Check validity of run number(s) | |
1043 | TObjArray *arr; | |
1044 | TObjString *os; | |
74013535 | 1045 | TString format; |
319593fb | 1046 | Int_t nruns = 0; |
904f9f5f | 1047 | TString schunk, schunk2; |
c57f56b7 | 1048 | TString path; |
1049 | if (!checked) { | |
1050 | checked = kTRUE; | |
a2f5fc01 | 1051 | useTags = fDataPattern.Contains("tag"); |
1052 | TObject::SetBit(AliAnalysisGrid::kUseTags, useTags); | |
c57f56b7 | 1053 | } |
a2f5fc01 | 1054 | if (useTags != fDataPattern.Contains("tag")) { |
c57f56b7 | 1055 | Error("CheckInputData", "Cannot mix input files using/not using tags"); |
1056 | return kFALSE; | |
1057 | } | |
1058 | if (fRunNumbers.Length()) { | |
a8739e8a | 1059 | Info("CheckDataType", "Using supplied run numbers (run ranges are ignored)"); |
c57f56b7 | 1060 | arr = fRunNumbers.Tokenize(" "); |
1061 | TIter next(arr); | |
1062 | while ((os=(TObjString*)next())) { | |
1063 | path = Form("%s/%s ", fGridDataDir.Data(), os->GetString().Data()); | |
923e2ca5 | 1064 | if (!DirectoryExists(path)) { |
1065 | Warning("CheckInputData", "Run number %s not found in path: <%s>", os->GetString().Data(), path.Data()); | |
a8739e8a | 1066 | continue; |
c57f56b7 | 1067 | } |
1068 | path = Form("%s/%s.xml", workdir.Data(),os->GetString().Data()); | |
1069 | TString msg = "\n##### file: "; | |
1070 | msg += path; | |
1071 | msg += " type: xml_collection;"; | |
a2f5fc01 | 1072 | if (useTags) msg += " using_tags: Yes"; |
c57f56b7 | 1073 | else msg += " using_tags: No"; |
23329835 | 1074 | Info("CheckDataType", "%s", msg.Data()); |
319593fb | 1075 | if (fNrunsPerMaster<2) { |
d2a409b2 | 1076 | AddDataFile(Form("%s.xml", os->GetString().Data())); |
319593fb | 1077 | } else { |
1078 | nruns++; | |
1079 | if (((nruns-1)%fNrunsPerMaster) == 0) { | |
1080 | schunk = os->GetString(); | |
1081 | } | |
1082 | if ((nruns%fNrunsPerMaster)!=0 && os!=arr->Last()) continue; | |
1083 | schunk += Form("_%s.xml", os->GetString().Data()); | |
d2a409b2 | 1084 | AddDataFile(schunk); |
319593fb | 1085 | } |
c57f56b7 | 1086 | } |
1087 | delete arr; | |
a8739e8a | 1088 | } else { |
1089 | Info("CheckDataType", "Using run range [%d, %d]", fRunRange[0], fRunRange[1]); | |
1090 | for (Int_t irun=fRunRange[0]; irun<=fRunRange[1]; irun++) { | |
74013535 | 1091 | format = Form("%%s/%s ", fRunPrefix.Data()); |
1092 | path = Form(format.Data(), fGridDataDir.Data(), irun); | |
923e2ca5 | 1093 | if (!DirectoryExists(path)) { |
a8739e8a | 1094 | continue; |
1095 | } | |
74013535 | 1096 | format = Form("%%s/%s.xml", fRunPrefix.Data()); |
1097 | path = Form(format.Data(), workdir.Data(),irun); | |
a8739e8a | 1098 | TString msg = "\n##### file: "; |
1099 | msg += path; | |
1100 | msg += " type: xml_collection;"; | |
a2f5fc01 | 1101 | if (useTags) msg += " using_tags: Yes"; |
a8739e8a | 1102 | else msg += " using_tags: No"; |
23329835 | 1103 | Info("CheckDataType", "%s", msg.Data()); |
319593fb | 1104 | if (fNrunsPerMaster<2) { |
74013535 | 1105 | format = Form("%s.xml", fRunPrefix.Data()); |
1106 | AddDataFile(Form(format.Data(),irun)); | |
319593fb | 1107 | } else { |
1108 | nruns++; | |
1109 | if (((nruns-1)%fNrunsPerMaster) == 0) { | |
74013535 | 1110 | schunk = Form(fRunPrefix.Data(),irun); |
319593fb | 1111 | } |
74013535 | 1112 | format = Form("_%s.xml", fRunPrefix.Data()); |
1113 | schunk2 = Form(format.Data(), irun); | |
319593fb | 1114 | if ((nruns%fNrunsPerMaster)!=0 && irun != fRunRange[1]) continue; |
904f9f5f | 1115 | schunk += schunk2; |
d2a409b2 | 1116 | AddDataFile(schunk); |
319593fb | 1117 | } |
a8739e8a | 1118 | } |
904f9f5f | 1119 | if (!fInputFiles) { |
1120 | schunk += schunk2; | |
1121 | AddDataFile(schunk); | |
1122 | } | |
c57f56b7 | 1123 | } |
1124 | return kTRUE; | |
1125 | } | |
1126 | ||
21ca8e59 | 1127 | //______________________________________________________________________________ |
4a8b667c | 1128 | Int_t AliAnalysisAlien::CopyLocalDataset(const char *griddir, const char *pattern, Int_t nfiles, const char *output, const char *archivefile, const char *outputdir) |
21ca8e59 | 1129 | { |
1130 | // Copy data from the given grid directory according a pattern and make a local | |
1131 | // dataset. | |
2ba4c287 | 1132 | // archivefile (optional) results in that the archive containing the file <pattern> is copied. archivefile can contain a list of files (semicolon-separated) which are all copied |
21ca8e59 | 1133 | if (!Connect()) { |
1134 | Error("CopyLocalDataset", "Cannot copy local dataset with no grid connection"); | |
4a8b667c | 1135 | return 0; |
21ca8e59 | 1136 | } |
1137 | if (!DirectoryExists(griddir)) { | |
1138 | Error("CopyLocalDataset", "Data directory %s not existing.", griddir); | |
4a8b667c | 1139 | return 0; |
21ca8e59 | 1140 | } |
1141 | TString command = Form("find -z -l %d %s %s", nfiles, griddir, pattern); | |
1142 | printf("Running command: %s\n", command.Data()); | |
1143 | TGridResult *res = gGrid->Command(command); | |
1144 | Int_t nfound = res->GetEntries(); | |
1145 | if (!nfound) { | |
1146 | Error("CopyLocalDataset", "No file found in <%s> having pattern <%s>", griddir, pattern); | |
4a8b667c | 1147 | return 0; |
21ca8e59 | 1148 | } |
1149 | printf("... found %d files. Copying locally ...\n", nfound); | |
2ba4c287 | 1150 | |
1151 | // archives | |
1152 | TObjArray* additionalArchives = 0; | |
1153 | if (strlen(archivefile) > 0 && TString(archivefile).Contains(";")) { | |
1154 | additionalArchives = TString(archivefile).Tokenize(";"); | |
1155 | archivefile = additionalArchives->At(0)->GetName(); | |
1156 | additionalArchives->RemoveAt(0); | |
1157 | additionalArchives->Compress(); | |
1158 | } | |
1159 | ||
21ca8e59 | 1160 | // Copy files locally |
1161 | ofstream out; | |
1162 | out.open(output, ios::out); | |
1163 | TMap *map; | |
1164 | TString turl, dirname, filename, temp; | |
1165 | TString cdir = gSystem->WorkingDirectory(); | |
139fe6ba | 1166 | gSystem->MakeDirectory(outputdir); |
1167 | gSystem->ChangeDirectory(outputdir); | |
4a8b667c | 1168 | Int_t ncopied = 0; |
21ca8e59 | 1169 | for (Int_t i=0; i<nfound; i++) { |
1170 | map = (TMap*)res->At(i); | |
1171 | turl = map->GetValue("turl")->GetName(); | |
1172 | filename = gSystem->BaseName(turl.Data()); | |
1173 | dirname = gSystem->DirName(turl.Data()); | |
1174 | dirname = gSystem->BaseName(dirname.Data()); | |
1175 | gSystem->MakeDirectory(dirname); | |
43b807f6 | 1176 | |
1177 | TString source(turl); | |
1178 | TString targetFileName(filename); | |
1179 | ||
1180 | if (strlen(archivefile) > 0) { | |
4a8b667c | 1181 | // TODO here the archive in which the file resides should be determined |
1182 | // however whereis returns only a guid, and guid2lfn does not work | |
1183 | // Therefore we use the one provided as argument for now | |
1184 | source = Form("%s/%s", gSystem->DirName(source.Data()), archivefile); | |
1185 | targetFileName = archivefile; | |
43b807f6 | 1186 | } |
1187 | if (TFile::Cp(source, Form("file:./%s/%s", dirname.Data(), targetFileName.Data()))) { | |
4a8b667c | 1188 | Bool_t success = kTRUE; |
1189 | if (additionalArchives) { | |
1190 | for (Int_t j=0; j<additionalArchives->GetEntriesFast(); j++) { | |
1191 | TString target; | |
1192 | target.Form("./%s/%s", dirname.Data(), additionalArchives->At(j)->GetName()); | |
1193 | gSystem->MakeDirectory(gSystem->DirName(target)); | |
1194 | success &= TFile::Cp(Form("%s/%s", gSystem->DirName(source.Data()), additionalArchives->At(j)->GetName()), Form("file:%s", target.Data())); | |
1195 | } | |
1196 | } | |
2ba4c287 | 1197 | |
4a8b667c | 1198 | if (success) { |
1199 | if (strlen(archivefile) > 0) targetFileName = Form("%s#%s", targetFileName.Data(), gSystem->BaseName(turl.Data())); | |
1200 | out << cdir << Form("/%s/%s/%s", outputdir, dirname.Data(), targetFileName.Data()) << endl; | |
1201 | ncopied++; | |
1202 | } | |
21ca8e59 | 1203 | } |
1204 | } | |
1205 | gSystem->ChangeDirectory(cdir); | |
1206 | delete res; | |
4a8b667c | 1207 | delete additionalArchives; |
1208 | return ncopied; | |
21ca8e59 | 1209 | } |
1210 | ||
c57f56b7 | 1211 | //______________________________________________________________________________ |
1212 | Bool_t AliAnalysisAlien::CreateDataset(const char *pattern) | |
1213 | { | |
1214 | // Create dataset for the grid data directory + run number. | |
3af861ff | 1215 | const Int_t gMaxEntries = 15000; |
d3b18c4c | 1216 | if (fProductionMode || TestBit(AliAnalysisGrid::kOffline)) return kTRUE; |
c57f56b7 | 1217 | if (!Connect()) { |
1218 | Error("CreateDataset", "Cannot create dataset with no grid connection"); | |
1219 | return kFALSE; | |
1220 | } | |
1221 | ||
1222 | // Cd workspace | |
d3b18c4c | 1223 | if (!TestBit(AliAnalysisGrid::kTest)) CdWork(); |
c57f56b7 | 1224 | TString workdir = gGrid->GetHomeDirectory(); |
1225 | workdir += fGridWorkingDir; | |
1226 | ||
1227 | // Compose the 'find' command arguments | |
74013535 | 1228 | TString format; |
c57f56b7 | 1229 | TString command; |
780ec36d | 1230 | TString delimiter = pattern; |
1231 | delimiter.Strip(); | |
1232 | if (delimiter.Contains(" ")) delimiter = ""; | |
1233 | else delimiter = " "; | |
c57f56b7 | 1234 | TString options = "-x collection "; |
bb885a9e | 1235 | if (TestBit(AliAnalysisGrid::kTest)) options += Form("-l %d ", fNtestFiles); |
3af861ff | 1236 | else options += Form("-l %d ", gMaxEntries); // Protection for the find command |
c57f56b7 | 1237 | TString conditions = ""; |
3af861ff | 1238 | Int_t nstart = 0; |
1239 | Int_t ncount = 0; | |
1240 | Int_t stage = 0; | |
c57f56b7 | 1241 | TString file; |
1242 | TString path; | |
319593fb | 1243 | Int_t nruns = 0; |
904f9f5f | 1244 | TString schunk, schunk2; |
ab254fd1 | 1245 | TGridCollection *cbase=0, *cadd=0; |
d2a409b2 | 1246 | if (!fRunNumbers.Length() && !fRunRange[0]) { |
1247 | if (fInputFiles && fInputFiles->GetEntries()) return kTRUE; | |
1248 | // Make a single data collection from data directory. | |
1249 | path = fGridDataDir; | |
923e2ca5 | 1250 | if (!DirectoryExists(path)) { |
d2a409b2 | 1251 | Error("CreateDataset", "Path to data directory %s not valid",fGridDataDir.Data()); |
1252 | return kFALSE; | |
780ec36d | 1253 | } |
923e2ca5 | 1254 | // CdWork(); |
d2a409b2 | 1255 | if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml"; |
1256 | else file = Form("%s.xml", gSystem->BaseName(path)); | |
3af861ff | 1257 | while (1) { |
1258 | ncount = 0; | |
1259 | stage++; | |
1260 | if (gSystem->AccessPathName(file) || TestBit(AliAnalysisGrid::kTest) || fOverwriteMode) { | |
1261 | command = "find "; | |
1262 | command += Form("%s -o %d ",options.Data(), nstart); | |
1263 | command += path; | |
780ec36d | 1264 | command += delimiter; |
3af861ff | 1265 | command += pattern; |
1266 | command += conditions; | |
1267 | printf("command: %s\n", command.Data()); | |
1268 | TGridResult *res = gGrid->Command(command); | |
1269 | if (res) delete res; | |
1270 | // Write standard output to file | |
1271 | gROOT->ProcessLine(Form("gGrid->Stdout(); > __tmp%d__%s", stage, file.Data())); | |
1272 | Bool_t hasGrep = (gSystem->Exec("grep --version 2>/dev/null > /dev/null")==0)?kTRUE:kFALSE; | |
1273 | Bool_t nullFile = kFALSE; | |
1274 | if (!hasGrep) { | |
1275 | Warning("CreateDataset", "'grep' command not available on this system - cannot validate the result of the grid 'find' command"); | |
1276 | } else { | |
1277 | nullFile = (gSystem->Exec(Form("grep -c /event __tmp%d__%s 2>/dev/null > __tmp__",stage,file.Data()))==0)?kFALSE:kTRUE; | |
1278 | if (nullFile) { | |
1279 | Error("CreateDataset","Dataset %s produced by the previous find command is empty !", file.Data()); | |
1280 | gSystem->Exec("rm -f __tmp*"); | |
1281 | return kFALSE; | |
1282 | } | |
1283 | TString line; | |
1284 | ifstream in; | |
1285 | in.open("__tmp__"); | |
1286 | in >> line; | |
1287 | in.close(); | |
1288 | gSystem->Exec("rm -f __tmp__"); | |
1289 | ncount = line.Atoi(); | |
1290 | } | |
1291 | } | |
1292 | if (ncount == gMaxEntries) { | |
1293 | Info("CreateDataset", "Dataset %s has more than 15K entries. Trying to merge...", file.Data()); | |
1294 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"__tmp%d__%s\", 1000000);",stage,file.Data())); | |
1295 | if (!cbase) cbase = cadd; | |
1296 | else { | |
1297 | cbase->Add(cadd); | |
1298 | delete cadd; | |
defd7a3a | 1299 | } |
3af861ff | 1300 | nstart += ncount; |
1301 | } else { | |
1302 | if (cbase) { | |
1303 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"__tmp%d__%s\", 1000000);",stage,file.Data())); | |
1304 | printf("... please wait - TAlienCollection::Add() scales badly...\n"); | |
1305 | cbase->Add(cadd); | |
1306 | delete cadd; | |
1307 | cbase->ExportXML(Form("file://%s", file.Data()),kFALSE,kFALSE, file, "Merged entries for a run"); | |
1308 | delete cbase; cbase = 0; | |
1309 | } else { | |
1310 | TFile::Cp(Form("__tmp%d__%s",stage, file.Data()), file.Data()); | |
1311 | } | |
1312 | gSystem->Exec("rm -f __tmp*"); | |
1313 | Info("CreateDataset", "Created dataset %s with %d files", file.Data(), nstart+ncount); | |
1314 | break; | |
1315 | } | |
0f389141 | 1316 | } |
1317 | Bool_t fileExists = FileExists(file); | |
1318 | if (!TestBit(AliAnalysisGrid::kTest) && (!fileExists || fOverwriteMode)) { | |
d2a409b2 | 1319 | // Copy xml file to alien space |
0f389141 | 1320 | if (fileExists) gGrid->Rm(file); |
d2a409b2 | 1321 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); |
1322 | if (!FileExists(file)) { | |
1323 | Error("CreateDataset", "Command %s did NOT succeed", command.Data()); | |
1324 | return kFALSE; | |
1325 | } | |
1326 | // Update list of files to be processed. | |
1327 | } | |
1328 | AddDataFile(Form("%s/%s", workdir.Data(), file.Data())); | |
1329 | return kTRUE; | |
1330 | } | |
c57f56b7 | 1331 | // Several runs |
a2f5fc01 | 1332 | Bool_t nullResult = kTRUE; |
a8739e8a | 1333 | if (fRunNumbers.Length()) { |
1334 | TObjArray *arr = fRunNumbers.Tokenize(" "); | |
1335 | TObjString *os; | |
1336 | TIter next(arr); | |
1337 | while ((os=(TObjString*)next())) { | |
3af861ff | 1338 | nstart = 0; |
1339 | stage = 0; | |
0dab9d6d | 1340 | path = Form("%s/%s", fGridDataDir.Data(), os->GetString().Data()); |
923e2ca5 | 1341 | if (!DirectoryExists(path)) continue; |
1342 | // CdWork(); | |
a8739e8a | 1343 | if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml"; |
1344 | else file = Form("%s.xml", os->GetString().Data()); | |
319593fb | 1345 | // If local collection file does not exist, create it via 'find' command. |
3af861ff | 1346 | while (1) { |
1347 | ncount = 0; | |
1348 | stage++; | |
1349 | if (gSystem->AccessPathName(file) || TestBit(AliAnalysisGrid::kTest) || fOverwriteMode) { | |
1350 | command = "find "; | |
1351 | command += Form("%s -o %d ",options.Data(), nstart); | |
1352 | command += path; | |
780ec36d | 1353 | command += delimiter; |
3af861ff | 1354 | command += pattern; |
1355 | command += conditions; | |
1356 | TGridResult *res = gGrid->Command(command); | |
1357 | if (res) delete res; | |
1358 | // Write standard output to file | |
1359 | gROOT->ProcessLine(Form("gGrid->Stdout(); > __tmp%d__%s", stage,file.Data())); | |
1360 | Bool_t hasGrep = (gSystem->Exec("grep --version 2>/dev/null > /dev/null")==0)?kTRUE:kFALSE; | |
1361 | Bool_t nullFile = kFALSE; | |
1362 | if (!hasGrep) { | |
1363 | Warning("CreateDataset", "'grep' command not available on this system - cannot validate the result of the grid 'find' command"); | |
1364 | } else { | |
1365 | nullFile = (gSystem->Exec(Form("grep -c /event __tmp%d__%s 2>/dev/null > __tmp__",stage,file.Data()))==0)?kFALSE:kTRUE; | |
1366 | if (nullFile) { | |
1367 | Warning("CreateDataset","Dataset %s produced by: <%s> is empty !", file.Data(), command.Data()); | |
1368 | gSystem->Exec("rm -f __tmp*"); | |
1369 | fRunNumbers.ReplaceAll(os->GetString().Data(), ""); | |
1604c9ed | 1370 | break; |
3af861ff | 1371 | } |
1372 | TString line; | |
1373 | ifstream in; | |
1374 | in.open("__tmp__"); | |
1375 | in >> line; | |
1376 | in.close(); | |
1377 | gSystem->Exec("rm -f __tmp__"); | |
1378 | ncount = line.Atoi(); | |
1379 | } | |
1380 | nullResult = kFALSE; | |
1381 | } | |
1382 | if (ncount == gMaxEntries) { | |
1383 | Info("CreateDataset", "Dataset %s has more than 15K entries. Trying to merge...", file.Data()); | |
1384 | if (fNrunsPerMaster > 1) { | |
1385 | Error("CreateDataset", "File %s has more than %d entries. Please set the number of runs per master to 1 !", | |
1386 | file.Data(),gMaxEntries); | |
1387 | return kFALSE; | |
1388 | } | |
1389 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"__tmp%d__%s\", 1000000);",stage,file.Data())); | |
1390 | if (!cbase) cbase = cadd; | |
1391 | else { | |
1392 | cbase->Add(cadd); | |
1393 | delete cadd; | |
defd7a3a | 1394 | } |
3af861ff | 1395 | nstart += ncount; |
1396 | } else { | |
c89a84bc | 1397 | if (cbase && fNrunsPerMaster<2) { |
3af861ff | 1398 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"__tmp%d__%s\", 1000000);",stage,file.Data())); |
1399 | printf("... please wait - TAlienCollection::Add() scales badly...\n"); | |
1400 | cbase->Add(cadd); | |
1401 | delete cadd; | |
1402 | cbase->ExportXML(Form("file://%s", file.Data()),kFALSE,kFALSE, file, "Merged entries for a run"); | |
1403 | delete cbase; cbase = 0; | |
1404 | } else { | |
1405 | TFile::Cp(Form("__tmp%d__%s",stage, file.Data()), file.Data()); | |
1406 | } | |
1407 | gSystem->Exec("rm -f __tmp*"); | |
1408 | Info("CreateDataset", "Created dataset %s with %d files", file.Data(), nstart+ncount); | |
1409 | break; | |
d3339be3 | 1410 | } |
3af861ff | 1411 | } |
a8739e8a | 1412 | if (TestBit(AliAnalysisGrid::kTest)) break; |
319593fb | 1413 | // Check if there is one run per master job. |
1414 | if (fNrunsPerMaster<2) { | |
1415 | if (FileExists(file)) { | |
0f389141 | 1416 | if (fOverwriteMode) gGrid->Rm(file); |
1417 | else { | |
1418 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", file.Data()); | |
1419 | continue; | |
1420 | } | |
319593fb | 1421 | } |
1422 | // Copy xml file to alien space | |
1423 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); | |
1424 | if (!FileExists(file)) { | |
1425 | Error("CreateDataset", "Command %s did NOT succeed", command.Data()); | |
1426 | delete arr; | |
1427 | return kFALSE; | |
1428 | } | |
1429 | } else { | |
1430 | nruns++; | |
1431 | if (((nruns-1)%fNrunsPerMaster) == 0) { | |
1432 | schunk = os->GetString(); | |
1433 | cbase = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
1434 | } else { | |
1435 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
84fcd93f | 1436 | printf(" Merging collection <%s> into masterjob input...\n", file.Data()); |
319593fb | 1437 | cbase->Add(cadd); |
1438 | delete cadd; | |
1439 | } | |
1440 | if ((nruns%fNrunsPerMaster)!=0 && os!=arr->Last()) { | |
1441 | continue; | |
1442 | } | |
1443 | schunk += Form("_%s.xml", os->GetString().Data()); | |
0f389141 | 1444 | if (FileExists(schunk)) { |
1445 | if (fOverwriteMode) gGrid->Rm(file); | |
1446 | else { | |
1447 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", schunk.Data()); | |
1448 | continue; | |
1449 | } | |
319593fb | 1450 | } |
84fcd93f | 1451 | printf("Exporting merged collection <%s> and copying to AliEn\n", schunk.Data()); |
319593fb | 1452 | cbase->ExportXML(Form("file://%s", schunk.Data()),kFALSE,kFALSE, schunk, "Merged runs"); |
e95434bc | 1453 | TFile::Cp(Form("file:%s",schunk.Data()), Form("alien://%s/%s",workdir.Data(), schunk.Data())); |
319593fb | 1454 | if (!FileExists(schunk)) { |
1455 | Error("CreateDataset", "Copy command did NOT succeed for %s", schunk.Data()); | |
1456 | delete arr; | |
1457 | return kFALSE; | |
1458 | } | |
d3339be3 | 1459 | } |
a8739e8a | 1460 | } |
1461 | delete arr; | |
a2f5fc01 | 1462 | if (nullResult) { |
d3339be3 | 1463 | Error("CreateDataset", "No valid dataset corresponding to the query!"); |
1464 | return kFALSE; | |
1465 | } | |
a8739e8a | 1466 | } else { |
1467 | // Process a full run range. | |
1468 | for (Int_t irun=fRunRange[0]; irun<=fRunRange[1]; irun++) { | |
0dab9d6d | 1469 | format = Form("%%s/%s", fRunPrefix.Data()); |
3af861ff | 1470 | nstart = 0; |
1471 | stage = 0; | |
74013535 | 1472 | path = Form(format.Data(), fGridDataDir.Data(), irun); |
923e2ca5 | 1473 | if (!DirectoryExists(path)) continue; |
1474 | // CdWork(); | |
74013535 | 1475 | format = Form("%s.xml", fRunPrefix.Data()); |
a8739e8a | 1476 | if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml"; |
74013535 | 1477 | else file = Form(format.Data(), irun); |
0f389141 | 1478 | if (FileExists(file) && fNrunsPerMaster<2 && !TestBit(AliAnalysisGrid::kTest)) { |
1479 | if (fOverwriteMode) gGrid->Rm(file); | |
1480 | else { | |
1481 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", file.Data()); | |
1482 | continue; | |
1483 | } | |
a8739e8a | 1484 | } |
319593fb | 1485 | // If local collection file does not exist, create it via 'find' command. |
3af861ff | 1486 | while (1) { |
1487 | ncount = 0; | |
1488 | stage++; | |
1489 | if (gSystem->AccessPathName(file) || TestBit(AliAnalysisGrid::kTest) || fOverwriteMode) { | |
1490 | command = "find "; | |
1491 | command += Form("%s -o %d ",options.Data(), nstart); | |
1492 | command += path; | |
780ec36d | 1493 | command += delimiter; |
3af861ff | 1494 | command += pattern; |
1495 | command += conditions; | |
1496 | TGridResult *res = gGrid->Command(command); | |
1497 | if (res) delete res; | |
1498 | // Write standard output to file | |
1499 | gROOT->ProcessLine(Form("gGrid->Stdout(); > __tmp%d__%s", stage,file.Data())); | |
1500 | Bool_t hasGrep = (gSystem->Exec("grep --version 2>/dev/null > /dev/null")==0)?kTRUE:kFALSE; | |
1501 | Bool_t nullFile = kFALSE; | |
1502 | if (!hasGrep) { | |
1503 | Warning("CreateDataset", "'grep' command not available on this system - cannot validate the result of the grid 'find' command"); | |
1504 | } else { | |
1505 | nullFile = (gSystem->Exec(Form("grep -c /event __tmp%d__%s 2>/dev/null > __tmp__",stage,file.Data()))==0)?kFALSE:kTRUE; | |
1506 | if (nullFile) { | |
1507 | Warning("CreateDataset","Dataset %s produced by: <%s> is empty !", file.Data(), command.Data()); | |
1508 | gSystem->Exec("rm -f __tmp*"); | |
1604c9ed | 1509 | break; |
3af861ff | 1510 | } |
1511 | TString line; | |
1512 | ifstream in; | |
1513 | in.open("__tmp__"); | |
1514 | in >> line; | |
1515 | in.close(); | |
1516 | gSystem->Exec("rm -f __tmp__"); | |
1517 | ncount = line.Atoi(); | |
1518 | } | |
1519 | nullResult = kFALSE; | |
1520 | } | |
1521 | if (ncount == gMaxEntries) { | |
1522 | Info("CreateDataset", "Dataset %s has more than 15K entries. Trying to merge...", file.Data()); | |
1523 | if (fNrunsPerMaster > 1) { | |
1524 | Error("CreateDataset", "File %s has more than %d entries. Please set the number of runs per master to 1 !", | |
1525 | file.Data(),gMaxEntries); | |
1526 | return kFALSE; | |
1527 | } | |
1528 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"__tmp%d__%s\", 1000000);",stage,file.Data())); | |
1529 | if (!cbase) cbase = cadd; | |
1530 | else { | |
1531 | cbase->Add(cadd); | |
1532 | delete cadd; | |
defd7a3a | 1533 | } |
3af861ff | 1534 | nstart += ncount; |
1535 | } else { | |
c89a84bc | 1536 | if (cbase && fNrunsPerMaster<2) { |
3af861ff | 1537 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"__tmp%d__%s\", 1000000);",stage,file.Data())); |
1538 | printf("... please wait - TAlienCollection::Add() scales badly...\n"); | |
1539 | cbase->Add(cadd); | |
1540 | delete cadd; | |
1541 | cbase->ExportXML(Form("file://%s", file.Data()),kFALSE,kFALSE, file, "Merged entries for a run"); | |
1542 | delete cbase; cbase = 0; | |
1543 | } else { | |
1544 | TFile::Cp(Form("__tmp%d__%s",stage, file.Data()), file.Data()); | |
1545 | } | |
1546 | Info("CreateDataset", "Created dataset %s with %d files", file.Data(), nstart+ncount); | |
1547 | break; | |
d3339be3 | 1548 | } |
319593fb | 1549 | } |
a8739e8a | 1550 | if (TestBit(AliAnalysisGrid::kTest)) break; |
319593fb | 1551 | // Check if there is one run per master job. |
1552 | if (fNrunsPerMaster<2) { | |
1553 | if (FileExists(file)) { | |
0f389141 | 1554 | if (fOverwriteMode) gGrid->Rm(file); |
1555 | else { | |
1556 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", file.Data()); | |
1557 | continue; | |
1558 | } | |
319593fb | 1559 | } |
1560 | // Copy xml file to alien space | |
1561 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); | |
1562 | if (!FileExists(file)) { | |
1563 | Error("CreateDataset", "Command %s did NOT succeed", command.Data()); | |
1564 | return kFALSE; | |
1565 | } | |
1566 | } else { | |
1567 | nruns++; | |
95e5b448 | 1568 | // Check if the collection for the chunk exist locally. |
1569 | Int_t nchunk = (nruns-1)/fNrunsPerMaster; | |
0f389141 | 1570 | if (FileExists(fInputFiles->At(nchunk)->GetName())) { |
1571 | if (fOverwriteMode) gGrid->Rm(fInputFiles->At(nchunk)->GetName()); | |
1572 | else continue; | |
1573 | } | |
84fcd93f | 1574 | printf(" Merging collection <%s> into %d runs chunk...\n",file.Data(),fNrunsPerMaster); |
319593fb | 1575 | if (((nruns-1)%fNrunsPerMaster) == 0) { |
74013535 | 1576 | schunk = Form(fRunPrefix.Data(), irun); |
319593fb | 1577 | cbase = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); |
1578 | } else { | |
1579 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
1580 | cbase->Add(cadd); | |
1581 | delete cadd; | |
1582 | } | |
74013535 | 1583 | format = Form("%%s_%s.xml", fRunPrefix.Data()); |
1584 | schunk2 = Form(format.Data(), schunk.Data(), irun); | |
904f9f5f | 1585 | if ((nruns%fNrunsPerMaster)!=0 && irun!=fRunRange[1] && schunk2 != fInputFiles->Last()->GetName()) { |
319593fb | 1586 | continue; |
1587 | } | |
904f9f5f | 1588 | schunk = schunk2; |
319593fb | 1589 | if (FileExists(schunk)) { |
0f389141 | 1590 | if (fOverwriteMode) gGrid->Rm(schunk); |
1591 | else { | |
1592 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", schunk.Data()); | |
1593 | continue; | |
1594 | } | |
319593fb | 1595 | } |
84fcd93f | 1596 | printf("Exporting merged collection <%s> and copying to AliEn.\n", schunk.Data()); |
319593fb | 1597 | cbase->ExportXML(Form("file://%s", schunk.Data()),kFALSE,kFALSE, schunk, "Merged runs"); |
95e5b448 | 1598 | if (FileExists(schunk)) { |
0f389141 | 1599 | if (fOverwriteMode) gGrid->Rm(schunk); |
1600 | else { | |
1601 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping copy...", schunk.Data()); | |
1602 | continue; | |
1603 | } | |
95e5b448 | 1604 | } |
319593fb | 1605 | TFile::Cp(Form("file:%s",schunk.Data()), Form("alien://%s/%s",workdir.Data(), schunk.Data())); |
1606 | if (!FileExists(schunk)) { | |
1607 | Error("CreateDataset", "Copy command did NOT succeed for %s", schunk.Data()); | |
1608 | return kFALSE; | |
1609 | } | |
1610 | } | |
c57f56b7 | 1611 | } |
a2f5fc01 | 1612 | if (nullResult) { |
d3339be3 | 1613 | Error("CreateDataset", "No valid dataset corresponding to the query!"); |
1614 | return kFALSE; | |
1615 | } | |
a8739e8a | 1616 | } |
c57f56b7 | 1617 | return kTRUE; |
1618 | } | |
1619 | ||
1620 | //______________________________________________________________________________ | |
1621 | Bool_t AliAnalysisAlien::CreateJDL() | |
1622 | { | |
1623 | // Generate a JDL file according to current settings. The name of the file is | |
1624 | // specified by fJDLName. | |
ec5acdce | 1625 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); |
c57f56b7 | 1626 | Bool_t error = kFALSE; |
1627 | TObjArray *arr = 0; | |
1628 | Bool_t copy = kTRUE; | |
d3b18c4c | 1629 | if (fProductionMode || TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; |
c57f56b7 | 1630 | Bool_t generate = kTRUE; |
1631 | if (TestBit(AliAnalysisGrid::kTest) || TestBit(AliAnalysisGrid::kSubmit)) generate = kFALSE; | |
1632 | if (!Connect()) { | |
1633 | Error("CreateJDL", "Alien connection required"); | |
1634 | return kFALSE; | |
1635 | } | |
1636 | // Check validity of alien workspace | |
d3b18c4c | 1637 | TString workdir; |
1638 | if (!fProductionMode && !fGridWorkingDir.BeginsWith("/alice")) workdir = gGrid->GetHomeDirectory(); | |
1639 | if (!fProductionMode && !TestBit(AliAnalysisGrid::kTest)) CdWork(); | |
c57f56b7 | 1640 | workdir += fGridWorkingDir; |
1641 | if (generate) { | |
1642 | TObjString *os; | |
1e466628 | 1643 | if (!fInputFiles && !fMCLoop) { |
c57f56b7 | 1644 | Error("CreateJDL()", "Define some input files for your analysis."); |
1645 | error = kTRUE; | |
1646 | } | |
1647 | // Compose list of input files | |
1648 | // Check if output files were defined | |
1649 | if (!fOutputFiles.Length()) { | |
1650 | Error("CreateJDL", "You must define at least one output file"); | |
1651 | error = kTRUE; | |
1652 | } | |
1653 | // Check if an output directory was defined and valid | |
1654 | if (!fGridOutputDir.Length()) { | |
1655 | Error("CreateJDL", "You must define AliEn output directory"); | |
1656 | error = kTRUE; | |
1657 | } else { | |
d3b18c4c | 1658 | if (!fProductionMode) { |
1659 | if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("%s/%s", workdir.Data(), fGridOutputDir.Data()); | |
1660 | if (!DirectoryExists(fGridOutputDir)) { | |
1661 | if (gGrid->Mkdir(fGridOutputDir,"-p")) { | |
1662 | Info("CreateJDL", "\n##### Created alien output directory %s", fGridOutputDir.Data()); | |
1663 | } else { | |
1664 | Error("CreateJDL", "Could not create alien output directory %s", fGridOutputDir.Data()); | |
1665 | // error = kTRUE; | |
1666 | } | |
67a3b254 | 1667 | } else { |
1668 | Warning("CreateJDL", "#### Output directory %s exists! If this contains old data, jobs will fail with ERROR_SV !!! ###", fGridOutputDir.Data()); | |
d3b18c4c | 1669 | } |
1670 | gGrid->Cd(workdir); | |
1671 | } | |
c57f56b7 | 1672 | } |
1673 | // Exit if any error up to now | |
1674 | if (error) return kFALSE; | |
1675 | // Set JDL fields | |
0f389141 | 1676 | if (!fUser.IsNull()) { |
1677 | fGridJDL->SetValue("User", Form("\"%s\"", fUser.Data())); | |
1678 | fMergingJDL->SetValue("User", Form("\"%s\"", fUser.Data())); | |
6da4839e AG |
1679 | } |
1680 | TString executable = fExecutable; | |
1681 | if (!executable.BeginsWith("/")) | |
1682 | executable.Prepend(Form("%s/", workdir.Data())); | |
1683 | fGridJDL->SetExecutable(executable, "This is the startup script"); | |
1684 | TString mergeExec = executable; | |
0f389141 | 1685 | mergeExec.ReplaceAll(".sh", "_merge.sh"); |
1686 | fMergingJDL->SetExecutable(mergeExec, "This is the startup script"); | |
1687 | mergeExec.ReplaceAll(".sh", ".C"); | |
9c5cde18 | 1688 | fMergingJDL->AddToInputSandbox(Form("LF:%s", mergeExec.Data()), "List of input files to be uploaded to workers"); |
b5b9dee8 | 1689 | if (!fArguments.IsNull()) |
1690 | fGridJDL->SetArguments(fArguments, "Arguments for the executable command"); | |
d3b18c4c | 1691 | if (IsOneStageMerging()) fMergingJDL->SetArguments(fGridOutputDir); |
f47d5cb4 | 1692 | else { |
1693 | if (fProductionMode) fMergingJDL->SetArguments("wn.xml $4"); // xml, stage | |
1694 | else fMergingJDL->SetArguments("wn.xml $2"); // xml, stage | |
1695 | } | |
b3e07543 | 1696 | |
1f0d1ca2 | 1697 | fGridJDL->SetValue("TTL", Form("\"%d\"",fTTL)); |
1698 | fGridJDL->SetDescription("TTL", Form("Time after which the job is killed (%d min.)", fTTL/60)); | |
1699 | fMergingJDL->SetValue("TTL", Form("\"%d\"",fTTL)); | |
1700 | fMergingJDL->SetDescription("TTL", Form("Time after which the job is killed (%d min.)", fTTL/60)); | |
1701 | ||
0f389141 | 1702 | if (fMaxInitFailed > 0) { |
c57f56b7 | 1703 | fGridJDL->SetValue("MaxInitFailed", Form("\"%d\"",fMaxInitFailed)); |
0f389141 | 1704 | fGridJDL->SetDescription("MaxInitFailed", "Maximum number of first failing jobs to abort the master job"); |
1705 | } | |
6da4839e | 1706 | if (fSplitMaxInputFileNumber > 0 && !fMCLoop) { |
c57f56b7 | 1707 | fGridJDL->SetValue("SplitMaxInputFileNumber", Form("\"%d\"", fSplitMaxInputFileNumber)); |
0f389141 | 1708 | fGridJDL->SetDescription("SplitMaxInputFileNumber", "Maximum number of input files to be processed per subjob"); |
b3e07543 | 1709 | } |
d7eb1f39 | 1710 | if (!IsOneStageMerging()) { |
f47d5cb4 | 1711 | fMergingJDL->SetValue("SplitMaxInputFileNumber", Form("\"%d\"",fMaxMergeFiles)); |
b3e07543 | 1712 | fMergingJDL->SetDescription("SplitMaxInputFileNumber", "Maximum number of input files to be merged in one go"); |
0f389141 | 1713 | } |
1714 | if (fSplitMode.Length()) { | |
c57f56b7 | 1715 | fGridJDL->SetValue("Split", Form("\"%s\"", fSplitMode.Data())); |
0f389141 | 1716 | fGridJDL->SetDescription("Split", "We split per SE or file"); |
b3e07543 | 1717 | } |
1718 | fMergingJDL->SetValue("Split", "\"se\""); | |
1719 | fMergingJDL->SetDescription("Split", "We split per SE for merging in stages"); | |
0f389141 | 1720 | if (!fAliROOTVersion.IsNull()) { |
1721 | fGridJDL->AddToPackages("AliRoot", fAliROOTVersion,"VO_ALICE", "List of requested packages"); | |
1722 | fMergingJDL->AddToPackages("AliRoot", fAliROOTVersion, "VO_ALICE", "List of requested packages"); | |
1723 | } | |
1724 | if (!fROOTVersion.IsNull()) { | |
c57f56b7 | 1725 | fGridJDL->AddToPackages("ROOT", fROOTVersion); |
0f389141 | 1726 | fMergingJDL->AddToPackages("ROOT", fROOTVersion); |
1727 | } | |
1728 | if (!fAPIVersion.IsNull()) { | |
c57f56b7 | 1729 | fGridJDL->AddToPackages("APISCONFIG", fAPIVersion); |
0f389141 | 1730 | fMergingJDL->AddToPackages("APISCONFIG", fAPIVersion); |
1731 | } | |
648174cf | 1732 | if (!fExternalPackages.IsNull()) { |
1733 | arr = fExternalPackages.Tokenize(" "); | |
1734 | TIter next(arr); | |
1735 | while ((os=(TObjString*)next())) { | |
1736 | TString pkgname = os->GetString(); | |
1737 | Int_t index = pkgname.Index("::"); | |
1738 | TString pkgversion = pkgname(index+2, pkgname.Length()); | |
1739 | pkgname.Remove(index); | |
1740 | fGridJDL->AddToPackages(pkgname, pkgversion); | |
0f389141 | 1741 | fMergingJDL->AddToPackages(pkgname, pkgversion); |
648174cf | 1742 | } |
1743 | delete arr; | |
1744 | } | |
6da4839e AG |
1745 | if (!fMCLoop) { |
1746 | fGridJDL->SetInputDataListFormat(fInputFormat, "Format of input data"); | |
1747 | fGridJDL->SetInputDataList("wn.xml", "Collection name to be processed on each worker node"); | |
6da4839e | 1748 | } |
d7eb1f39 AG |
1749 | fMergingJDL->SetInputDataListFormat(fInputFormat, "Format of input data"); |
1750 | fMergingJDL->SetInputDataList("wn.xml", "Collection name to be processed on each worker node"); | |
0f389141 | 1751 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), fAnalysisMacro.Data()), "List of input files to be uploaded to workers"); |
f10e8481 | 1752 | TString analysisFile = fExecutable; |
1753 | analysisFile.ReplaceAll(".sh", ".root"); | |
1754 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(),analysisFile.Data())); | |
f866cba5 | 1755 | fMergingJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(),analysisFile.Data())); |
c57f56b7 | 1756 | if (fAdditionalLibs.Length()) { |
1757 | arr = fAdditionalLibs.Tokenize(" "); | |
1758 | TIter next(arr); | |
1759 | while ((os=(TObjString*)next())) { | |
1760 | if (os->GetString().Contains(".so")) continue; | |
1761 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), os->GetString().Data())); | |
0f389141 | 1762 | fMergingJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), os->GetString().Data())); |
c57f56b7 | 1763 | } |
1764 | delete arr; | |
1765 | } | |
4e5c5506 | 1766 | if (fPackages) { |
1767 | TIter next(fPackages); | |
1768 | TObject *obj; | |
0f389141 | 1769 | while ((obj=next())) { |
4e5c5506 | 1770 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), obj->GetName())); |
0f389141 | 1771 | fMergingJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), obj->GetName())); |
1772 | } | |
4e5c5506 | 1773 | } |
95e16f01 | 1774 | const char *comment = "List of output files and archives"; |
c57f56b7 | 1775 | if (fOutputArchive.Length()) { |
e4d9a069 | 1776 | TString outputArchive = fOutputArchive; |
1777 | if (!fRegisterExcludes.IsNull()) { | |
1778 | arr = fRegisterExcludes.Tokenize(" "); | |
1779 | TIter next1(arr); | |
1780 | while ((os=(TObjString*)next1())) { | |
1781 | outputArchive.ReplaceAll(Form("%s,",os->GetString().Data()),""); | |
1782 | outputArchive.ReplaceAll(os->GetString(),""); | |
1783 | } | |
1784 | delete arr; | |
1785 | } | |
1786 | arr = outputArchive.Tokenize(" "); | |
c57f56b7 | 1787 | TIter next(arr); |
0f389141 | 1788 | Bool_t first = kTRUE; |
0f389141 | 1789 | while ((os=(TObjString*)next())) { |
0f389141 | 1790 | if (!os->GetString().Contains("@") && fCloseSE.Length()) |
95e16f01 | 1791 | fGridJDL->AddToSet("Output", Form("%s@%s",os->GetString().Data(), fCloseSE.Data())); |
0f389141 | 1792 | else |
95e16f01 | 1793 | fGridJDL->AddToSet("Output", os->GetString()); |
1794 | if (first) fGridJDL->AddToSetDescription("Output", comment); | |
0f389141 | 1795 | first = kFALSE; |
1796 | } | |
c57f56b7 | 1797 | delete arr; |
f790bc1b | 1798 | // Output archive for the merging jdl |
f790bc1b | 1799 | if (TestBit(AliAnalysisGrid::kDefaultOutputs)) { |
b83f84f0 | 1800 | outputArchive = "log_archive.zip:std*@disk=1 "; |
f790bc1b | 1801 | // Add normal output files, extra files + terminate files |
0c0825e4 | 1802 | TString files; |
1803 | if (IsMergeAOD()) files = GetListOfFiles("outaodextter"); | |
1804 | else files = GetListOfFiles("outextter"); | |
37d21c01 | 1805 | // Do not register files in fRegisterExcludes |
1806 | if (!fRegisterExcludes.IsNull()) { | |
1807 | arr = fRegisterExcludes.Tokenize(" "); | |
f790bc1b | 1808 | TIter next1(arr); |
1809 | while ((os=(TObjString*)next1())) { | |
1810 | files.ReplaceAll(Form("%s,",os->GetString().Data()),""); | |
1811 | files.ReplaceAll(os->GetString(),""); | |
1812 | } | |
66d71516 | 1813 | delete arr; |
0f389141 | 1814 | } |
f790bc1b | 1815 | files.ReplaceAll(".root", "*.root"); |
ec5acdce | 1816 | |
1817 | if (mgr->IsCollectThroughput()) | |
95e16f01 | 1818 | outputArchive += Form("root_archive.zip:%s,*.stat@disk=%d %s@disk=%d",files.Data(),fNreplicas, mgr->GetFileInfoLog(),fNreplicas); |
ec5acdce | 1819 | else |
1820 | outputArchive += Form("root_archive.zip:%s,*.stat@disk=%d",files.Data(),fNreplicas); | |
f790bc1b | 1821 | } else { |
95f84779 | 1822 | TString files = fOutputArchive; |
1823 | files.ReplaceAll(".root", "*.root"); // nreplicas etc should be already atttached by use | |
1824 | outputArchive = files; | |
f790bc1b | 1825 | } |
0f389141 | 1826 | arr = outputArchive.Tokenize(" "); |
705adb3e | 1827 | TIter next2(arr); |
0f389141 | 1828 | first = kTRUE; |
705adb3e | 1829 | while ((os=(TObjString*)next2())) { |
0cdf65a8 | 1830 | TString currentfile = os->GetString(); |
0cdf65a8 | 1831 | if (!currentfile.Contains("@") && fCloseSE.Length()) |
95e16f01 | 1832 | fMergingJDL->AddToSet("Output", Form("%s@%s",currentfile.Data(), fCloseSE.Data())); |
0f389141 | 1833 | else |
95e16f01 | 1834 | fMergingJDL->AddToSet("Output", currentfile); |
1835 | if (first) fMergingJDL->AddToSetDescription("Output", comment); | |
0f389141 | 1836 | first = kFALSE; |
1837 | } | |
1838 | delete arr; | |
c57f56b7 | 1839 | } |
149d288c | 1840 | arr = fOutputFiles.Tokenize(","); |
c57f56b7 | 1841 | TIter next(arr); |
0f389141 | 1842 | Bool_t first = kTRUE; |
43da816a | 1843 | while ((os=(TObjString*)next())) { |
e1eaf596 | 1844 | // Ignore ouputs in jdl that are also in outputarchive |
1845 | TString sout = os->GetString(); | |
f790bc1b | 1846 | sout.ReplaceAll("*", ""); |
1847 | sout.ReplaceAll(".root", ""); | |
e1eaf596 | 1848 | if (sout.Index("@")>0) sout.Remove(sout.Index("@")); |
1849 | if (fOutputArchive.Contains(sout)) continue; | |
37d21c01 | 1850 | // Ignore fRegisterExcludes |
1851 | if (fRegisterExcludes.Contains(sout)) continue; | |
0f389141 | 1852 | if (!first) comment = NULL; |
43da816a | 1853 | if (!os->GetString().Contains("@") && fCloseSE.Length()) |
95e16f01 | 1854 | fGridJDL->AddToSet("Output", Form("%s@%s",os->GetString().Data(), fCloseSE.Data())); |
43da816a | 1855 | else |
95e16f01 | 1856 | fGridJDL->AddToSet("Output", os->GetString()); |
1857 | if (first) fGridJDL->AddToSetDescription("Output", comment); | |
f790bc1b | 1858 | if (fMergeExcludes.Contains(sout)) continue; |
1859 | if (!os->GetString().Contains("@") && fCloseSE.Length()) | |
95e16f01 | 1860 | fMergingJDL->AddToSet("Output", Form("%s@%s",os->GetString().Data(), fCloseSE.Data())); |
f790bc1b | 1861 | else |
95e16f01 | 1862 | fMergingJDL->AddToSet("Output", os->GetString()); |
1863 | if (first) fMergingJDL->AddToSetDescription("Output", comment); | |
1864 | first = kFALSE; | |
43da816a | 1865 | } |
c57f56b7 | 1866 | delete arr; |
0f389141 | 1867 | fGridJDL->SetPrice((UInt_t)fPrice, "AliEn price for this job"); |
1868 | fMergingJDL->SetPrice((UInt_t)fPrice, "AliEn price for this job"); | |
d3b18c4c | 1869 | TString validationScript = fValidationScript; |
0f389141 | 1870 | fGridJDL->SetValidationCommand(Form("%s/%s", workdir.Data(),validationScript.Data()), "Validation script to be run for each subjob"); |
d3b18c4c | 1871 | validationScript.ReplaceAll(".sh", "_merge.sh"); |
0f389141 | 1872 | fMergingJDL->SetValidationCommand(Form("%s/%s", workdir.Data(),validationScript.Data()), "Validation script to be run for each subjob"); |
1873 | if (fMasterResubmitThreshold) { | |
1874 | fGridJDL->SetValue("MasterResubmitThreshold", Form("\"%d%%\"", fMasterResubmitThreshold)); | |
1875 | fGridJDL->SetDescription("MasterResubmitThreshold", "Resubmit failed jobs until DONE rate reaches this percentage"); | |
1876 | } | |
d2a409b2 | 1877 | // Write a jdl with 2 input parameters: collection name and output dir name. |
1878 | WriteJDL(copy); | |
c57f56b7 | 1879 | } |
1880 | // Copy jdl to grid workspace | |
a8739e8a | 1881 | if (copy) { |
b5e4aaa7 | 1882 | // Check if an output directory was defined and valid |
1883 | if (!fGridOutputDir.Length()) { | |
1884 | Error("CreateJDL", "You must define AliEn output directory"); | |
1885 | return kFALSE; | |
1886 | } else { | |
1887 | if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("%s/%s", workdir.Data(), fGridOutputDir.Data()); | |
bb2e67a0 | 1888 | if (!fProductionMode && !DirectoryExists(fGridOutputDir)) { |
b93f8109 | 1889 | if (gGrid->Mkdir(fGridOutputDir,"-p")) { |
b5e4aaa7 | 1890 | Info("CreateJDL", "\n##### Created alien output directory %s", fGridOutputDir.Data()); |
1891 | } else { | |
1892 | Error("CreateJDL", "Could not create alien output directory %s", fGridOutputDir.Data()); | |
1893 | return kFALSE; | |
1894 | } | |
1895 | } | |
1896 | gGrid->Cd(workdir); | |
1897 | } | |
648174cf | 1898 | if (TestBit(AliAnalysisGrid::kSubmit)) { |
0f389141 | 1899 | TString mergeJDLName = fExecutable; |
1900 | mergeJDLName.ReplaceAll(".sh", "_merge.jdl"); | |
648174cf | 1901 | TString locjdl = Form("%s/%s", fGridOutputDir.Data(),fJDLName.Data()); |
0f389141 | 1902 | TString locjdl1 = Form("%s/%s", fGridOutputDir.Data(),mergeJDLName.Data()); |
1903 | if (fProductionMode) { | |
648174cf | 1904 | locjdl = Form("%s/%s", workdir.Data(),fJDLName.Data()); |
0f389141 | 1905 | locjdl1 = Form("%s/%s", workdir.Data(),mergeJDLName.Data()); |
1906 | } | |
648174cf | 1907 | if (FileExists(locjdl)) gGrid->Rm(locjdl); |
0f389141 | 1908 | if (FileExists(locjdl1)) gGrid->Rm(locjdl1); |
1909 | Info("CreateJDL", "\n##### Copying JDL file <%s> to your AliEn output directory", fJDLName.Data()); | |
6c395669 | 1910 | if (!copyLocal2Alien("CreateJDL", fJDLName, locjdl)) |
1911 | Fatal("","Terminating"); | |
1912 | // TFile::Cp(Form("file:%s",fJDLName.Data()), Form("alien://%s", locjdl.Data())); | |
0f389141 | 1913 | if (fMergeViaJDL) { |
1914 | Info("CreateJDL", "\n##### Copying merging JDL file <%s> to your AliEn output directory", mergeJDLName.Data()); | |
6c395669 | 1915 | // TFile::Cp(Form("file:%s",mergeJDLName.Data()), Form("alien://%s", locjdl1.Data())); |
1916 | if (!copyLocal2Alien("CreateJDL", mergeJDLName.Data(), locjdl1)) | |
1917 | Fatal("","Terminating"); | |
0f389141 | 1918 | } |
648174cf | 1919 | } |
c57f56b7 | 1920 | if (fAdditionalLibs.Length()) { |
e7c71df0 | 1921 | arr = fAdditionalLibs.Tokenize(" "); |
c57f56b7 | 1922 | TObjString *os; |
1923 | TIter next(arr); | |
1924 | while ((os=(TObjString*)next())) { | |
c57f56b7 | 1925 | if (os->GetString().Contains(".so")) continue; |
4e5c5506 | 1926 | Info("CreateJDL", "\n##### Copying dependency: <%s> to your alien workspace", os->GetString().Data()); |
c57f56b7 | 1927 | if (FileExists(os->GetString())) gGrid->Rm(os->GetString()); |
6c395669 | 1928 | // TFile::Cp(Form("file:%s",os->GetString().Data()), Form("alien://%s/%s", workdir.Data(), os->GetString().Data())); |
1929 | if (!copyLocal2Alien("CreateJDL", os->GetString().Data(), | |
1930 | Form("%s/%s", workdir.Data(), os->GetString().Data()))) | |
1931 | Fatal("","Terminating"); | |
c57f56b7 | 1932 | } |
1933 | delete arr; | |
1934 | } | |
4e5c5506 | 1935 | if (fPackages) { |
1936 | TIter next(fPackages); | |
1937 | TObject *obj; | |
1938 | while ((obj=next())) { | |
fdbbc7be | 1939 | if (FileExists(obj->GetName())) gGrid->Rm(obj->GetName()); |
4e5c5506 | 1940 | Info("CreateJDL", "\n##### Copying dependency: <%s> to your alien workspace", obj->GetName()); |
6c395669 | 1941 | // TFile::Cp(Form("file:%s",obj->GetName()), Form("alien://%s/%s", workdir.Data(), obj->GetName())); |
1942 | if (!copyLocal2Alien("CreateJDL",obj->GetName(), | |
1943 | Form("%s/%s", workdir.Data(), obj->GetName()))) | |
1944 | Fatal("","Terminating"); | |
4e5c5506 | 1945 | } |
1946 | } | |
c57f56b7 | 1947 | } |
1948 | return kTRUE; | |
1949 | } | |
1950 | ||
a8739e8a | 1951 | //______________________________________________________________________________ |
d2a409b2 | 1952 | Bool_t AliAnalysisAlien::WriteJDL(Bool_t copy) |
a8739e8a | 1953 | { |
1954 | // Writes one or more JDL's corresponding to findex. If findex is negative, | |
1955 | // all run numbers are considered in one go (jdl). For non-negative indices | |
1956 | // they correspond to the indices in the array fInputFiles. | |
dec33edc | 1957 | if (!fInputFiles && !fMCLoop) return kFALSE; |
d3b18c4c | 1958 | TObject *os; |
1959 | TString workdir; | |
1960 | if (!fProductionMode && !fGridWorkingDir.BeginsWith("/alice")) workdir = gGrid->GetHomeDirectory(); | |
a8739e8a | 1961 | workdir += fGridWorkingDir; |
f47d5cb4 | 1962 | TString stageName = "$2"; |
1963 | if (fProductionMode) stageName = "$4"; | |
1964 | if (!fMergeDirName.IsNull()) { | |
1965 | fMergingJDL->AddToInputDataCollection(Form("LF:$1/%s/Stage_%s.xml,nodownload",fMergeDirName.Data(),stageName.Data()), "Collection of files to be merged for current stage"); | |
1966 | fMergingJDL->SetOutputDirectory(Form("$1/%s/Stage_%s/#alien_counter_03i#",fMergeDirName.Data(),stageName.Data()), "Output directory"); | |
1967 | } else { | |
1968 | fMergingJDL->AddToInputDataCollection(Form("LF:$1/Stage_%s.xml,nodownload",stageName.Data()), "Collection of files to be merged for current stage"); | |
1969 | fMergingJDL->SetOutputDirectory(Form("$1/Stage_%s/#alien_counter_03i#",stageName.Data()), "Output directory"); | |
1970 | } | |
d3b18c4c | 1971 | if (fProductionMode) { |
a8739e8a | 1972 | TIter next(fInputFiles); |
b3e07543 | 1973 | while ((os=next())) { |
d3b18c4c | 1974 | fGridJDL->AddToInputDataCollection(Form("LF:%s,nodownload", os->GetName()), "Input xml collections"); |
b3e07543 | 1975 | } |
56754bf6 | 1976 | if (!fOutputToRunNo) |
1977 | fGridJDL->SetOutputDirectory(Form("%s/#alien_counter_04i#", fGridOutputDir.Data())); | |
1978 | else | |
1979 | fGridJDL->SetOutputDirectory(fGridOutputDir); | |
d3b18c4c | 1980 | } else { |
1981 | if (!fRunNumbers.Length() && !fRunRange[0]) { | |
1982 | // One jdl with no parameters in case input data is specified by name. | |
1983 | TIter next(fInputFiles); | |
1984 | while ((os=next())) | |
1985 | fGridJDL->AddToInputDataCollection(Form("LF:%s,nodownload", os->GetName()), "Input xml collections"); | |
1986 | if (!fOutputSingle.IsNull()) | |
1987 | fGridJDL->SetOutputDirectory(Form("#alienfulldir#/../%s",fOutputSingle.Data()), "Output directory"); | |
1988 | else { | |
1989 | fGridJDL->SetOutputDirectory(Form("%s/#alien_counter_03i#", fGridOutputDir.Data()), "Output directory"); | |
b1dade98 | 1990 | // fMergingJDL->SetOutputDirectory(fGridOutputDir); |
d3b18c4c | 1991 | } |
1992 | } else { | |
1993 | // One jdl to be submitted with 2 input parameters: data collection name and output dir prefix | |
1994 | fGridJDL->AddToInputDataCollection(Form("LF:%s/$1,nodownload", workdir.Data()), "Input xml collections"); | |
1995 | if (!fOutputSingle.IsNull()) { | |
1996 | if (!fOutputToRunNo) fGridJDL->SetOutputDirectory(Form("#alienfulldir#/%s",fOutputSingle.Data()), "Output directory"); | |
1997 | else fGridJDL->SetOutputDirectory(Form("%s/$2",fGridOutputDir.Data()), "Output directory"); | |
1998 | } else { | |
1999 | fGridJDL->SetOutputDirectory(Form("%s/$2/#alien_counter_03i#", fGridOutputDir.Data()), "Output directory"); | |
d3b18c4c | 2000 | } |
2001 | } | |
a8739e8a | 2002 | } |
2003 | ||
a8739e8a | 2004 | // Generate the JDL as a string |
2005 | TString sjdl = fGridJDL->Generate(); | |
0f389141 | 2006 | TString sjdl1 = fMergingJDL->Generate(); |
f47d5cb4 | 2007 | // Final merge jdl |
2008 | if (!fMergeDirName.IsNull()) { | |
2009 | fMergingJDL->SetOutputDirectory(Form("$1/%s",fMergeDirName.Data()), "Output directory"); | |
2010 | fMergingJDL->AddToInputSandbox(Form("LF:$1/%s/Stage_%s.xml",fMergeDirName.Data(),stageName.Data())); | |
2011 | } else { | |
2012 | fMergingJDL->SetOutputDirectory("$1", "Output directory"); | |
2013 | fMergingJDL->AddToInputSandbox(Form("LF:$1/Stage_%s.xml",stageName.Data())); | |
2014 | } | |
b3e07543 | 2015 | TString sjdl2 = fMergingJDL->Generate(); |
2016 | Int_t index, index1; | |
95e16f01 | 2017 | sjdl.ReplaceAll("\",\"", "\",\n \""); |
a8739e8a | 2018 | sjdl.ReplaceAll("(member", "\n (member"); |
2019 | sjdl.ReplaceAll("\",\"VO_", "\",\n \"VO_"); | |
2020 | sjdl.ReplaceAll("{", "{\n "); | |
2021 | sjdl.ReplaceAll("};", "\n};"); | |
2022 | sjdl.ReplaceAll("{\n \n", "{\n"); | |
2023 | sjdl.ReplaceAll("\n\n", "\n"); | |
2024 | sjdl.ReplaceAll("OutputDirectory", "OutputDir"); | |
95e16f01 | 2025 | sjdl1.ReplaceAll("\",\"", "\",\n \""); |
0f389141 | 2026 | sjdl1.ReplaceAll("(member", "\n (member"); |
2027 | sjdl1.ReplaceAll("\",\"VO_", "\",\n \"VO_"); | |
2028 | sjdl1.ReplaceAll("{", "{\n "); | |
2029 | sjdl1.ReplaceAll("};", "\n};"); | |
2030 | sjdl1.ReplaceAll("{\n \n", "{\n"); | |
2031 | sjdl1.ReplaceAll("\n\n", "\n"); | |
2032 | sjdl1.ReplaceAll("OutputDirectory", "OutputDir"); | |
95e16f01 | 2033 | sjdl2.ReplaceAll("\",\"", "\",\n \""); |
b3e07543 | 2034 | sjdl2.ReplaceAll("(member", "\n (member"); |
2035 | sjdl2.ReplaceAll("\",\"VO_", "\",\n \"VO_"); | |
2036 | sjdl2.ReplaceAll("{", "{\n "); | |
2037 | sjdl2.ReplaceAll("};", "\n};"); | |
2038 | sjdl2.ReplaceAll("{\n \n", "{\n"); | |
2039 | sjdl2.ReplaceAll("\n\n", "\n"); | |
2040 | sjdl2.ReplaceAll("OutputDirectory", "OutputDir"); | |
a8739e8a | 2041 | sjdl += "JDLVariables = \n{\n \"Packages\",\n \"OutputDir\"\n};\n"; |
f60ef0ba | 2042 | sjdl.Prepend(Form("Jobtag = {\n \"comment:%s\"\n};\n", fJobTag.Data())); |
a8739e8a | 2043 | index = sjdl.Index("JDLVariables"); |
2044 | if (index >= 0) sjdl.Insert(index, "\n# JDL variables\n"); | |
4739b2aa | 2045 | sjdl += "Workdirectorysize = {\"5000MB\"};"; |
b3e07543 | 2046 | sjdl1 += "Workdirectorysize = {\"5000MB\"};"; |
0f389141 | 2047 | sjdl1 += "JDLVariables = \n{\n \"Packages\",\n \"OutputDir\"\n};\n"; |
d3b18c4c | 2048 | index = fJobTag.Index(":"); |
2049 | if (index < 0) index = fJobTag.Length(); | |
2050 | TString jobTag = fJobTag; | |
f47d5cb4 | 2051 | if (fProductionMode) jobTag.Insert(index,"_Stage$4"); |
d3b18c4c | 2052 | sjdl1.Prepend(Form("Jobtag = {\n \"comment:%s_Merging\"\n};\n", jobTag.Data())); |
f47d5cb4 | 2053 | if (fProductionMode) { |
2054 | sjdl1.Prepend("# Generated merging jdl (production mode) \ | |
2055 | \n# $1 = full alien path to output directory to be merged \ | |
2056 | \n# $2 = train number \ | |
2057 | \n# $3 = production (like LHC10b) \ | |
2058 | \n# $4 = merging stage \ | |
2059 | \n# Stage_<n>.xml made via: find <OutputDir> *Stage<n-1>/*root_archive.zip\n"); | |
2060 | sjdl2.Prepend(Form("Jobtag = {\n \"comment:%s_FinalMerging\"\n};\n", jobTag.Data())); | |
2061 | sjdl2.Prepend("# Generated merging jdl \ | |
2062 | \n# $1 = full alien path to output directory to be merged \ | |
2063 | \n# $2 = train number \ | |
2064 | \n# $3 = production (like LHC10b) \ | |
2065 | \n# $4 = merging stage \ | |
2066 | \n# Stage_<n>.xml made via: find <OutputDir> *Stage<n-1>/*root_archive.zip\n"); | |
2067 | } else { | |
2068 | sjdl1.Prepend("# Generated merging jdl \ | |
2069 | \n# $1 = full alien path to output directory to be merged \ | |
2070 | \n# $2 = merging stage \ | |
03335324 | 2071 | \n# xml made via: find <OutputDir> *Stage<n-1>/*root_archive.zip\n"); |
f47d5cb4 | 2072 | sjdl2.Prepend(Form("Jobtag = {\n \"comment:%s_FinalMerging\"\n};\n", jobTag.Data())); |
2073 | sjdl2.Prepend("# Generated merging jdl \ | |
2074 | \n# $1 = full alien path to output directory to be merged \ | |
2075 | \n# $2 = merging stage \ | |
03335324 | 2076 | \n# xml made via: find <OutputDir> *Stage<n-1>/*root_archive.zip\n"); |
f47d5cb4 | 2077 | } |
0f389141 | 2078 | index = sjdl1.Index("JDLVariables"); |
2079 | if (index >= 0) sjdl1.Insert(index, "\n# JDL variables\n"); | |
b3e07543 | 2080 | index = sjdl2.Index("JDLVariables"); |
2081 | if (index >= 0) sjdl2.Insert(index, "\n# JDL variables\n"); | |
4739b2aa | 2082 | sjdl1 += "Workdirectorysize = {\"5000MB\"};"; |
b3e07543 | 2083 | sjdl2 += "Workdirectorysize = {\"5000MB\"};"; |
2084 | index = sjdl2.Index("Split ="); | |
2085 | if (index>=0) { | |
2086 | index1 = sjdl2.Index("\n", index); | |
2087 | sjdl2.Remove(index, index1-index+1); | |
2088 | } | |
2089 | index = sjdl2.Index("SplitMaxInputFileNumber"); | |
2090 | if (index>=0) { | |
2091 | index1 = sjdl2.Index("\n", index); | |
2092 | sjdl2.Remove(index, index1-index+1); | |
2093 | } | |
2094 | index = sjdl2.Index("InputDataCollection"); | |
2095 | if (index>=0) { | |
2096 | index1 = sjdl2.Index(";", index); | |
2097 | sjdl2.Remove(index, index1-index+1); | |
2098 | } | |
2099 | index = sjdl2.Index("InputDataListFormat"); | |
2100 | if (index>=0) { | |
2101 | index1 = sjdl2.Index("\n", index); | |
2102 | sjdl2.Remove(index, index1-index+1); | |
2103 | } | |
2104 | index = sjdl2.Index("InputDataList"); | |
2105 | if (index>=0) { | |
2106 | index1 = sjdl2.Index("\n", index); | |
2107 | sjdl2.Remove(index, index1-index+1); | |
2108 | } | |
f47d5cb4 | 2109 | sjdl2.ReplaceAll("wn.xml", Form("Stage_%s.xml",stageName.Data())); |
a8739e8a | 2110 | // Write jdl to file |
a8739e8a | 2111 | ofstream out; |
d2a409b2 | 2112 | out.open(fJDLName.Data(), ios::out); |
a8739e8a | 2113 | if (out.bad()) { |
d3b18c4c | 2114 | Error("WriteJDL", "Bad file name: %s", fJDLName.Data()); |
a8739e8a | 2115 | return kFALSE; |
2116 | } | |
2117 | out << sjdl << endl; | |
b3e07543 | 2118 | out.close(); |
0f389141 | 2119 | TString mergeJDLName = fExecutable; |
2120 | mergeJDLName.ReplaceAll(".sh", "_merge.jdl"); | |
2121 | if (fMergeViaJDL) { | |
2122 | ofstream out1; | |
2123 | out1.open(mergeJDLName.Data(), ios::out); | |
b3e07543 | 2124 | if (out1.bad()) { |
d3b18c4c | 2125 | Error("WriteJDL", "Bad file name: %s", mergeJDLName.Data()); |
0f389141 | 2126 | return kFALSE; |
2127 | } | |
2128 | out1 << sjdl1 << endl; | |
b3e07543 | 2129 | out1.close(); |
2130 | ofstream out2; | |
2131 | TString finalJDL = mergeJDLName; | |
2132 | finalJDL.ReplaceAll(".jdl", "_final.jdl"); | |
2133 | out2.open(finalJDL.Data(), ios::out); | |
2134 | if (out2.bad()) { | |
2135 | Error("WriteJDL", "Bad file name: %s", finalJDL.Data()); | |
2136 | return kFALSE; | |
2137 | } | |
2138 | out2 << sjdl2 << endl; | |
2139 | out2.close(); | |
0f389141 | 2140 | } |
a8739e8a | 2141 | |
2142 | // Copy jdl to grid workspace | |
2143 | if (!copy) { | |
d3b18c4c | 2144 | Info("WriteJDL", "\n##### You may want to review jdl:%s and analysis macro:%s before running in <submit> mode", fJDLName.Data(), fAnalysisMacro.Data()); |
a8739e8a | 2145 | } else { |
d2a409b2 | 2146 | TString locjdl = Form("%s/%s", fGridOutputDir.Data(),fJDLName.Data()); |
0f389141 | 2147 | TString locjdl1 = Form("%s/%s", fGridOutputDir.Data(),mergeJDLName.Data()); |
b3e07543 | 2148 | TString finalJDL = mergeJDLName; |
2149 | finalJDL.ReplaceAll(".jdl", "_final.jdl"); | |
2150 | TString locjdl2 = Form("%s/%s", fGridOutputDir.Data(),finalJDL.Data()); | |
0f389141 | 2151 | if (fProductionMode) { |
b5fe9cba | 2152 | locjdl = Form("%s/%s", workdir.Data(),fJDLName.Data()); |
0f389141 | 2153 | locjdl1 = Form("%s/%s", workdir.Data(),mergeJDLName.Data()); |
b3e07543 | 2154 | locjdl2 = Form("%s/%s", workdir.Data(),finalJDL.Data()); |
0f389141 | 2155 | } |
d2a409b2 | 2156 | if (FileExists(locjdl)) gGrid->Rm(locjdl); |
0f389141 | 2157 | if (FileExists(locjdl1)) gGrid->Rm(locjdl1); |
b3e07543 | 2158 | if (FileExists(locjdl2)) gGrid->Rm(locjdl2); |
d3b18c4c | 2159 | Info("WriteJDL", "\n##### Copying JDL file <%s> to your AliEn output directory", fJDLName.Data()); |
6c395669 | 2160 | // TFile::Cp(Form("file:%s",fJDLName.Data()), Form("alien://%s", locjdl.Data())); |
2161 | if (!copyLocal2Alien("WriteJDL",fJDLName.Data(),locjdl.Data())) | |
2162 | Fatal("","Terminating"); | |
0f389141 | 2163 | if (fMergeViaJDL) { |
b3e07543 | 2164 | Info("WriteJDL", "\n##### Copying merging JDL files <%s> to your AliEn output directory", mergeJDLName.Data()); |
6c395669 | 2165 | // TFile::Cp(Form("file:%s",mergeJDLName.Data()), Form("alien://%s", locjdl1.Data())); |
2166 | // TFile::Cp(Form("file:%s",finalJDL.Data()), Form("alien://%s", locjdl2.Data())); | |
2167 | if (!copyLocal2Alien("WriteJDL",mergeJDLName.Data(),locjdl1.Data())) | |
2168 | Fatal("","Terminating"); | |
2169 | if (!copyLocal2Alien("WriteJDL",finalJDL.Data(),locjdl2.Data())) | |
2170 | Fatal("","Terminating"); | |
0f389141 | 2171 | } |
a8739e8a | 2172 | } |
2173 | return kTRUE; | |
2174 | } | |
2175 | ||
c57f56b7 | 2176 | //______________________________________________________________________________ |
5513444a | 2177 | Bool_t AliAnalysisAlien::FileExists(const char *lfn) |
c57f56b7 | 2178 | { |
2179 | // Returns true if file exists. | |
5513444a | 2180 | if (!gGrid) return kFALSE; |
2ea55496 | 2181 | TString slfn = lfn; |
2182 | slfn.ReplaceAll("alien://",""); | |
2183 | TGridResult *res = gGrid->Ls(slfn); | |
c57f56b7 | 2184 | if (!res) return kFALSE; |
2185 | TMap *map = dynamic_cast<TMap*>(res->At(0)); | |
2186 | if (!map) { | |
2187 | delete res; | |
2188 | return kFALSE; | |
2189 | } | |
2190 | TObjString *objs = dynamic_cast<TObjString*>(map->GetValue("name")); | |
2191 | if (!objs || !objs->GetString().Length()) { | |
2192 | delete res; | |
2193 | return kFALSE; | |
2194 | } | |
2195 | delete res; | |
2196 | return kTRUE; | |
2197 | } | |
2198 | ||
923e2ca5 | 2199 | //______________________________________________________________________________ |
2200 | Bool_t AliAnalysisAlien::DirectoryExists(const char *dirname) | |
2201 | { | |
2202 | // Returns true if directory exists. Can be also a path. | |
d7aac489 | 2203 | // Since there is not API in TAlien, we use the Cd trick: |
923e2ca5 | 2204 | if (!gGrid) return kFALSE; |
d7aac489 | 2205 | // Backup current path |
2206 | TString cpath = gGrid->Pwd(); | |
2207 | TString command = "cd "; | |
2208 | TString sdir(dirname); | |
2209 | sdir.ReplaceAll("alien://", ""); | |
2210 | command += sdir; | |
2211 | TGridResult *res = gGrid->Command(command); | |
2212 | if (!res) { | |
2213 | gGrid->Cd(cpath); | |
2214 | return kFALSE; | |
2215 | } | |
2216 | TMap *map = (TMap*)res->At(0); | |
2217 | if (!map) { | |
2218 | gGrid->Cd(cpath); | |
2219 | delete res; | |
2220 | return kFALSE; | |
923e2ca5 | 2221 | } |
d7aac489 | 2222 | TString sval = map->GetValue("__result__")->GetName(); |
2223 | Bool_t retval = (Bool_t)sval.Atoi(); | |
2224 | gGrid->Cd(cpath); | |
923e2ca5 | 2225 | delete res; |
d7aac489 | 2226 | return retval; |
2227 | } | |
923e2ca5 | 2228 | |
c57f56b7 | 2229 | //______________________________________________________________________________ |
a2f5fc01 | 2230 | void AliAnalysisAlien::CheckDataType(const char *lfn, Bool_t &isCollection, Bool_t &isXml, Bool_t &useTags) |
c57f56b7 | 2231 | { |
2232 | // Check input data type. | |
a2f5fc01 | 2233 | isCollection = kFALSE; |
2234 | isXml = kFALSE; | |
2235 | useTags = kFALSE; | |
c57f56b7 | 2236 | if (!gGrid) { |
2237 | Error("CheckDataType", "No connection to grid"); | |
2238 | return; | |
2239 | } | |
a2f5fc01 | 2240 | isCollection = IsCollection(lfn); |
c57f56b7 | 2241 | TString msg = "\n##### file: "; |
2242 | msg += lfn; | |
a2f5fc01 | 2243 | if (isCollection) { |
c57f56b7 | 2244 | msg += " type: raw_collection;"; |
2245 | // special treatment for collections | |
a2f5fc01 | 2246 | isXml = kFALSE; |
c57f56b7 | 2247 | // check for tag files in the collection |
2248 | TGridResult *res = gGrid->Command(Form("listFilesFromCollection -z -v %s",lfn), kFALSE); | |
2249 | if (!res) { | |
2250 | msg += " using_tags: No (unknown)"; | |
23329835 | 2251 | Info("CheckDataType", "%s", msg.Data()); |
c57f56b7 | 2252 | return; |
2253 | } | |
2254 | const char* typeStr = res->GetKey(0, "origLFN"); | |
2255 | if (!typeStr || !strlen(typeStr)) { | |
2256 | msg += " using_tags: No (unknown)"; | |
23329835 | 2257 | Info("CheckDataType", "%s", msg.Data()); |
c57f56b7 | 2258 | return; |
2259 | } | |
2260 | TString file = typeStr; | |
a2f5fc01 | 2261 | useTags = file.Contains(".tag"); |
2262 | if (useTags) msg += " using_tags: Yes"; | |
c57f56b7 | 2263 | else msg += " using_tags: No"; |
23329835 | 2264 | Info("CheckDataType", "%s", msg.Data()); |
c57f56b7 | 2265 | return; |
2266 | } | |
2267 | TString slfn(lfn); | |
2268 | slfn.ToLower(); | |
a2f5fc01 | 2269 | isXml = slfn.Contains(".xml"); |
2270 | if (isXml) { | |
c57f56b7 | 2271 | // Open xml collection and check if there are tag files inside |
2272 | msg += " type: xml_collection;"; | |
2273 | TGridCollection *coll = (TGridCollection*)gROOT->ProcessLine(Form("TAlienCollection::Open(\"alien://%s\",1);",lfn)); | |
2274 | if (!coll) { | |
2275 | msg += " using_tags: No (unknown)"; | |
23329835 | 2276 | Info("CheckDataType", "%s", msg.Data()); |
c57f56b7 | 2277 | return; |
2278 | } | |
2279 | TMap *map = coll->Next(); | |
2280 | if (!map) { | |
2281 | msg += " using_tags: No (unknown)"; | |
23329835 | 2282 | Info("CheckDataType", "%s", msg.Data()); |
c57f56b7 | 2283 | return; |
2284 | } | |
2285 | map = (TMap*)map->GetValue(""); | |
2286 | TString file; | |
2287 | if (map && map->GetValue("name")) file = map->GetValue("name")->GetName(); | |
a2f5fc01 | 2288 | useTags = file.Contains(".tag"); |
c57f56b7 | 2289 | delete coll; |
a2f5fc01 | 2290 | if (useTags) msg += " using_tags: Yes"; |
c57f56b7 | 2291 | else msg += " using_tags: No"; |
23329835 | 2292 | Info("CheckDataType", "%s", msg.Data()); |
c57f56b7 | 2293 | return; |
2294 | } | |
a2f5fc01 | 2295 | useTags = slfn.Contains(".tag"); |
c57f56b7 | 2296 | if (slfn.Contains(".root")) msg += " type: root file;"; |
f866cba5 | 2297 | else msg += " type: unknown file;"; |
a2f5fc01 | 2298 | if (useTags) msg += " using_tags: Yes"; |
c57f56b7 | 2299 | else msg += " using_tags: No"; |
23329835 | 2300 | Info("CheckDataType", "%s", msg.Data()); |
c57f56b7 | 2301 | } |
2302 | ||
4e5c5506 | 2303 | //______________________________________________________________________________ |
2304 | void AliAnalysisAlien::EnablePackage(const char *package) | |
2305 | { | |
2306 | // Enables a par file supposed to exist in the current directory. | |
2307 | TString pkg(package); | |
2308 | pkg.ReplaceAll(".par", ""); | |
2309 | pkg += ".par"; | |
2310 | if (gSystem->AccessPathName(pkg)) { | |
ebcdf05e | 2311 | Fatal("EnablePackage", "Package %s not found", pkg.Data()); |
4e5c5506 | 2312 | return; |
2313 | } | |
2314 | if (!TObject::TestBit(AliAnalysisGrid::kUsePars)) | |
2315 | Info("EnablePackage", "AliEn plugin will use .par packages"); | |
2316 | TObject::SetBit(AliAnalysisGrid::kUsePars, kTRUE); | |
2317 | if (!fPackages) { | |
2318 | fPackages = new TObjArray(); | |
2319 | fPackages->SetOwner(); | |
2320 | } | |
2321 | fPackages->Add(new TObjString(pkg)); | |
2322 | } | |
2323 | ||
3bdcb562 | 2324 | //______________________________________________________________________________ |
2325 | TChain *AliAnalysisAlien::GetChainForTestMode(const char *treeName) const | |
2326 | { | |
2327 | // Make a tree from files having the location specified in fFileForTestMode. | |
2328 | // Inspired from JF's CreateESDChain. | |
2329 | if (fFileForTestMode.IsNull()) { | |
2330 | Error("GetChainForTestMode", "For proof test mode please use SetFileForTestMode() pointing to a file that contains data file locations."); | |
2331 | return NULL; | |
2332 | } | |
2333 | if (gSystem->AccessPathName(fFileForTestMode)) { | |
2334 | Error("GetChainForTestMode", "File not found: %s", fFileForTestMode.Data()); | |
2335 | return NULL; | |
2336 | } | |
2337 | // Open the file | |
2338 | ifstream in; | |
2339 | in.open(fFileForTestMode); | |
2340 | Int_t count = 0; | |
2341 | // Read the input list of files and add them to the chain | |
b505f1f8 | 2342 | TString line; |
d6c60197 | 2343 | TString streeName(treeName); |
2344 | if (IsUseMCchain()) streeName = "TE"; | |
2345 | TChain *chain = new TChain(streeName); | |
06f67114 | 2346 | TList *friends = new TList(); |
2347 | TChain *cfriend = 0; | |
2348 | if (!fFriendChainName.IsNull()) { | |
2349 | TObjArray *list = fFriendChainName.Tokenize(" "); | |
2350 | TIter next(list); | |
2351 | TObjString *str; | |
2352 | while((str=(TObjString*)next())) { | |
2353 | cfriend = new TChain(streeName, str->GetName()); | |
2354 | friends->Add(cfriend); | |
2355 | chain->AddFriend(cfriend); | |
2356 | } | |
2357 | delete list; | |
2358 | } | |
2359 | TString bpath; | |
2360 | TIter nextfriend(friends); | |
b505f1f8 | 2361 | while (in.good()) |
2362 | { | |
3bdcb562 | 2363 | in >> line; |
ffbe06b9 | 2364 | if (line.IsNull() || line.BeginsWith("#")) continue; |
3bdcb562 | 2365 | if (count++ == fNtestFiles) break; |
2366 | TString esdFile(line); | |
2367 | TFile *file = TFile::Open(esdFile); | |
b505f1f8 | 2368 | if (file && !file->IsZombie()) { |
2369 | chain->Add(esdFile); | |
3bdcb562 | 2370 | file->Close(); |
b505f1f8 | 2371 | if (!fFriendChainName.IsNull()) { |
4b5d9e21 | 2372 | if (esdFile.Index("#") > -1) |
2373 | esdFile.Remove(esdFile.Index("#")); | |
06f67114 | 2374 | bpath = gSystem->DirName(esdFile); |
2375 | bpath += "/"; | |
2376 | TString fileFriend; | |
2377 | nextfriend.Reset(); | |
2378 | while ((cfriend=(TChain*)nextfriend())) { | |
2379 | fileFriend = bpath; | |
2380 | fileFriend += cfriend->GetTitle(); | |
2381 | file = TFile::Open(fileFriend); | |
2382 | if (file && !file->IsZombie()) { | |
2383 | file->Close(); | |
2384 | cfriend->Add(fileFriend); | |
2385 | } else { | |
2386 | Fatal("GetChainForTestMode", "Cannot open friend file: %s", fileFriend.Data()); | |
2387 | return 0; | |
2388 | } | |
2389 | } | |
4b5d9e21 | 2390 | } |
3bdcb562 | 2391 | } else { |
2392 | Error("GetChainforTestMode", "Skipping un-openable file: %s", esdFile.Data()); | |
2393 | } | |
b505f1f8 | 2394 | } |
2395 | in.close(); | |
2396 | if (!chain->GetListOfFiles()->GetEntries()) { | |
3bdcb562 | 2397 | Error("GetChainForTestMode", "No file from %s could be opened", fFileForTestMode.Data()); |
2398 | delete chain; | |
06f67114 | 2399 | friends->Delete(); |
2400 | delete friends; | |
3bdcb562 | 2401 | return NULL; |
b505f1f8 | 2402 | } |
b505f1f8 | 2403 | return chain; |
3bdcb562 | 2404 | } |
2405 | ||
d2a409b2 | 2406 | //______________________________________________________________________________ |
2407 | const char *AliAnalysisAlien::GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone) | |
2408 | { | |
2409 | // Get job status for all jobs with jobid>jobidstart. | |
2410 | static char mstatus[20]; | |
2411 | mstatus[0] = '\0'; | |
2412 | nrunning = 0; | |
2413 | nwaiting = 0; | |
2414 | nerror = 0; | |
2415 | ndone = 0; | |
2416 | TGridJobStatusList *list = gGrid->Ps(""); | |
2417 | if (!list) return mstatus; | |
2418 | Int_t nentries = list->GetSize(); | |
2419 | TGridJobStatus *status; | |
2420 | Int_t pid; | |
2421 | for (Int_t ijob=0; ijob<nentries; ijob++) { | |
2422 | status = (TGridJobStatus *)list->At(ijob); | |
8ddad121 | 2423 | pid = gROOT->ProcessLine(Form("atoi(((TAlienJobStatus*)%p)->GetKey(\"queueId\"));", status)); |
d2a409b2 | 2424 | if (pid<jobidstart) continue; |
2425 | if (pid == lastid) { | |
8ddad121 | 2426 | gROOT->ProcessLine(Form("sprintf((char*)%p,((TAlienJobStatus*)%p)->GetKey(\"status\"));",mstatus, status)); |
d2a409b2 | 2427 | } |
2428 | switch (status->GetStatus()) { | |
2429 | case TGridJobStatus::kWAITING: | |
2430 | nwaiting++; break; | |
2431 | case TGridJobStatus::kRUNNING: | |
2432 | nrunning++; break; | |
2433 | case TGridJobStatus::kABORTED: | |
2434 | case TGridJobStatus::kFAIL: | |
2435 | case TGridJobStatus::kUNKNOWN: | |
2436 | nerror++; break; | |
2437 | case TGridJobStatus::kDONE: | |
2438 | ndone++; | |
2439 | } | |
2440 | } | |
2441 | list->Delete(); | |
2442 | delete list; | |
2443 | return mstatus; | |
2444 | } | |
2445 | ||
c57f56b7 | 2446 | //______________________________________________________________________________ |
2447 | Bool_t AliAnalysisAlien::IsCollection(const char *lfn) const | |
2448 | { | |
2449 | // Returns true if file is a collection. Functionality duplicated from | |
2450 | // TAlien::Type() because we don't want to directly depend on TAlien. | |
2451 | if (!gGrid) { | |
2452 | Error("IsCollection", "No connection to grid"); | |
2453 | return kFALSE; | |
2454 | } | |
2455 | TGridResult *res = gGrid->Command(Form("type -z %s",lfn),kFALSE); | |
2456 | if (!res) return kFALSE; | |
2457 | const char* typeStr = res->GetKey(0, "type"); | |
2458 | if (!typeStr || !strlen(typeStr)) return kFALSE; | |
2459 | if (!strcmp(typeStr, "collection")) return kTRUE; | |
2460 | delete res; | |
2461 | return kFALSE; | |
2462 | } | |
2463 | ||
fe2d7fc2 | 2464 | //______________________________________________________________________________ |
2465 | Bool_t AliAnalysisAlien::IsSingleOutput() const | |
2466 | { | |
2467 | // Check if single-ouput option is on. | |
2468 | return (!fOutputSingle.IsNull()); | |
2469 | } | |
715da79c | 2470 | |
2471 | //______________________________________________________________________________ | |
2472 | Long64_t AliAnalysisAlien::RunMacroAndExtractLibs(const char* macro, const char *args, TString &libs) | |
2473 | { | |
2474 | // Tries to run the specified macro and return the libraries that it loads. | |
2475 | TString expname; | |
2476 | if (strlen(macro)) expname = gSystem->ExpandPathName(macro); | |
2477 | if (expname.IsNull() || gSystem->AccessPathName(expname)) { | |
2478 | ::Error("RunMacroAndExtractLibs","Cannot find macro %s in current directory", macro); | |
2479 | return -1; | |
2480 | } | |
2481 | TString oldlibs = gSystem->GetLibraries(); | |
2482 | TMacro m(expname); | |
2483 | Int_t error = 0; | |
2484 | Long64_t retval = m.Exec(args, &error); | |
2485 | if (error != TInterpreter::kNoError) | |
2486 | { | |
2487 | ::Error("RunMacroAndExtractLibs", "Macro interpretation %s failed", macro); | |
2488 | return -1; | |
2489 | } | |
2490 | libs = gSystem->GetLibraries(); | |
2491 | libs.ReplaceAll(oldlibs, ""); | |
2492 | libs.Strip(TString::kLeading); | |
2493 | TObjArray *libTokens = libs.Tokenize(" "); | |
2494 | libs = ""; | |
2495 | for (Int_t i=0; i<libTokens->GetEntries(); i++) { | |
2496 | if (!libs.IsNull()) libs += " "; | |
2497 | libs += gSystem->BaseName(libTokens->At(i)->GetName()); | |
2498 | } | |
2499 | delete libTokens; | |
2500 | return retval; | |
2501 | } | |
2502 | ||
16a4353c | 2503 | //______________________________________________________________________________ |
2504 | void AliAnalysisAlien::Print(Option_t *) const | |
2505 | { | |
2506 | // Print current plugin settings. | |
84fcd93f | 2507 | printf("### AliEn analysis plugin current settings ###\n"); |
d3b18c4c | 2508 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); |
2509 | if (mgr && mgr->IsProofMode()) { | |
2510 | TString proofType = "= PLUGIN IN PROOF MODE ON CLUSTER:_________________"; | |
2511 | if (TestBit(AliAnalysisGrid::kTest)) | |
2512 | proofType = "= PLUGIN IN PROOF LITE MODE ON CLUSTER:____________"; | |
2513 | printf("%s %s\n", proofType.Data(), fProofCluster.Data()); | |
2514 | if (!fProofDataSet.IsNull()) | |
2515 | printf("= Requested data set:___________________________ %s\n", fProofDataSet.Data()); | |
2516 | if (fProofReset==1) | |
2517 | printf("= Soft reset signal will be send to master______ CHANGE BEHAVIOR AFTER COMPLETION\n"); | |
2518 | if (fProofReset>1) | |
2519 | printf("= Hard reset signal will be send to master______ CHANGE BEHAVIOR AFTER COMPLETION\n"); | |
874de7ea | 2520 | if (!fROOTVersion.IsNull()) |
2521 | printf("= ROOT version requested________________________ %s\n", fROOTVersion.Data()); | |
d3b18c4c | 2522 | else |
2523 | printf("= ROOT version requested________________________ default\n"); | |
2524 | printf("= AliRoot version requested_____________________ %s\n", fAliROOTVersion.Data()); | |
2525 | if (!fAliRootMode.IsNull()) | |
2526 | printf("= Requested AliRoot mode________________________ %s\n", fAliRootMode.Data()); | |
2527 | if (fNproofWorkers) | |
2528 | printf("= Number of PROOF workers limited to____________ %d\n", fNproofWorkers); | |
2529 | if (fNproofWorkersPerSlave) | |
2530 | printf("= Maximum number of workers per slave___________ %d\n", fNproofWorkersPerSlave); | |
2531 | if (TestSpecialBit(kClearPackages)) | |
2532 | printf("= ClearPackages requested...\n"); | |
2533 | if (fIncludePath.Data()) | |
2534 | printf("= Include path for runtime task compilation: ___ %s\n", fIncludePath.Data()); | |
2535 | printf("= Additional libs to be loaded or souces to be compiled runtime: <%s>\n",fAdditionalLibs.Data()); | |
2536 | if (fPackages && fPackages->GetEntries()) { | |
2537 | TIter next(fPackages); | |
2538 | TObject *obj; | |
2539 | TString list; | |
2540 | while ((obj=next())) list += obj->GetName(); | |
2541 | printf("= Par files to be used: ________________________ %s\n", list.Data()); | |
2542 | } | |
2543 | if (TestSpecialBit(kProofConnectGrid)) | |
2544 | printf("= Requested PROOF connection to grid\n"); | |
2545 | return; | |
2546 | } | |
e1c22e21 | 2547 | printf("= OverwriteMode:________________________________ %d\n", fOverwriteMode); |
2548 | if (fOverwriteMode) { | |
2549 | printf("***** NOTE: Overwrite mode will overwrite the input generated datasets and partial results from previous analysis. \ | |
2550 | \n***** To disable, use: plugin->SetOverwriteMode(kFALSE);\n"); | |
2551 | } | |
348be253 | 2552 | printf("= Copy files to grid: __________________________ %s\n", (IsUseCopy())?"YES":"NO"); |
780ec36d | 2553 | printf("= Check if files can be copied to grid: ________ %s\n", (IsCheckCopy())?"YES":"NO:Print"); |
84fcd93f | 2554 | printf("= Production mode:______________________________ %d\n", fProductionMode); |
2555 | printf("= Version of API requested: ____________________ %s\n", fAPIVersion.Data()); | |
2556 | printf("= Version of ROOT requested: ___________________ %s\n", fROOTVersion.Data()); | |
2557 | printf("= Version of AliRoot requested: ________________ %s\n", fAliROOTVersion.Data()); | |
16a4353c | 2558 | if (fUser.Length()) |
84fcd93f | 2559 | printf("= User running the plugin: _____________________ %s\n", fUser.Data()); |
2560 | printf("= Grid workdir relative to user $HOME: _________ %s\n", fGridWorkingDir.Data()); | |
2561 | printf("= Grid output directory relative to workdir: ___ %s\n", fGridOutputDir.Data()); | |
780ec36d | 2562 | TString basedatadir = fGridDataDir; |
2563 | TString pattern = fDataPattern; | |
2564 | pattern.Strip(); | |
2565 | Int_t ind = pattern.Index(" "); | |
2566 | if (ind>=0) { | |
2567 | basedatadir += "/%run%/"; | |
2568 | basedatadir += pattern(0, ind); | |
2569 | pattern = pattern(ind+1, pattern.Length()); | |
2570 | } | |
2571 | printf("= Data base directory path requested: __________ %s\n", basedatadir.Data()); | |
2572 | printf("= Data search pattern: _________________________ %s\n", pattern.Data()); | |
84fcd93f | 2573 | printf("= Input data format: ___________________________ %s\n", fInputFormat.Data()); |
16a4353c | 2574 | if (fRunNumbers.Length()) |
84fcd93f | 2575 | printf("= Run numbers to be processed: _________________ %s\n", fRunNumbers.Data()); |
16a4353c | 2576 | if (fRunRange[0]) |
74013535 | 2577 | printf("= Run range to be processed: ___________________ %d-%d\n", fRunRange[0], fRunRange[1]); |
16a4353c | 2578 | if (!fRunRange[0] && !fRunNumbers.Length()) { |
2579 | TIter next(fInputFiles); | |
2580 | TObject *obj; | |
2581 | TString list; | |
2582 | while ((obj=next())) list += obj->GetName(); | |
84fcd93f | 2583 | printf("= Input files to be processed: _________________ %s\n", list.Data()); |
16a4353c | 2584 | } |
2585 | if (TestBit(AliAnalysisGrid::kTest)) | |
84fcd93f | 2586 | printf("= Number of input files used in test mode: _____ %d\n", fNtestFiles); |
2587 | printf("= List of output files to be registered: _______ %s\n", fOutputFiles.Data()); | |
2588 | printf("= List of outputs going to be archived: ________ %s\n", fOutputArchive.Data()); | |
2589 | printf("= List of outputs that should not be merged: ___ %s\n", fMergeExcludes.Data()); | |
37d21c01 | 2590 | printf("= List of outputs that should not be registered: %s\n", fRegisterExcludes.Data()); |
d3b18c4c | 2591 | printf("= List of outputs produced during Terminate: ___ %s\n", fTerminateFiles.Data()); |
84fcd93f | 2592 | printf("=====================================================================\n"); |
2593 | printf("= Job price: ___________________________________ %d\n", fPrice); | |
2594 | printf("= Time to live (TTL): __________________________ %d\n", fTTL); | |
2595 | printf("= Max files per subjob: ________________________ %d\n", fSplitMaxInputFileNumber); | |
16a4353c | 2596 | if (fMaxInitFailed>0) |
84fcd93f | 2597 | printf("= Max number of subjob fails to kill: __________ %d\n", fMaxInitFailed); |
16a4353c | 2598 | if (fMasterResubmitThreshold>0) |
84fcd93f | 2599 | printf("= Resubmit master job if failed subjobs >_______ %d\n", fMasterResubmitThreshold); |
149d288c | 2600 | printf("= Number of replicas for the output files_______ %d\n", fNreplicas); |
319593fb | 2601 | if (fNrunsPerMaster>0) |
84fcd93f | 2602 | printf("= Number of runs per master job: _______________ %d\n", fNrunsPerMaster); |
2603 | printf("= Number of files in one chunk to be merged: ___ %d\n", fMaxMergeFiles); | |
b5b9dee8 | 2604 | printf("= Name of the generated execution script: ______ %s\n", fExecutable.Data()); |
2605 | printf("= Executable command: __________________________ %s\n", fExecutableCommand.Data()); | |
16a4353c | 2606 | if (fArguments.Length()) |
84fcd93f | 2607 | printf("= Arguments for the execution script: __________ %s\n",fArguments.Data()); |
631c0b05 | 2608 | if (fExecutableArgs.Length()) |
2609 | printf("= Arguments after macro name in executable______ %s\n",fExecutableArgs.Data()); | |
84fcd93f | 2610 | printf("= Name of the generated analysis macro: ________ %s\n",fAnalysisMacro.Data()); |
2611 | printf("= User analysis files to be deployed: __________ %s\n",fAnalysisSource.Data()); | |
2612 | printf("= Additional libs to be loaded or souces to be compiled runtime: <%s>\n",fAdditionalLibs.Data()); | |
2613 | printf("= Master jobs split mode: ______________________ %s\n",fSplitMode.Data()); | |
16a4353c | 2614 | if (fDatasetName) |
84fcd93f | 2615 | printf("= Custom name for the dataset to be created: ___ %s\n", fDatasetName.Data()); |
2616 | printf("= Name of the generated JDL: ___________________ %s\n", fJDLName.Data()); | |
16a4353c | 2617 | if (fIncludePath.Data()) |
84fcd93f | 2618 | printf("= Include path for runtime task compilation: ___ %s\n", fIncludePath.Data()); |
16a4353c | 2619 | if (fCloseSE.Length()) |
84fcd93f | 2620 | printf("= Force job outputs to storage element: ________ %s\n", fCloseSE.Data()); |
16a4353c | 2621 | if (fFriendChainName.Length()) |
84fcd93f | 2622 | printf("= Open friend chain file on worker: ____________ %s\n", fFriendChainName.Data()); |
d3b18c4c | 2623 | if (fPackages && fPackages->GetEntries()) { |
16a4353c | 2624 | TIter next(fPackages); |
2625 | TObject *obj; | |
2626 | TString list; | |
2627 | while ((obj=next())) list += obj->GetName(); | |
84fcd93f | 2628 | printf("= Par files to be used: ________________________ %s\n", list.Data()); |
16a4353c | 2629 | } |
2630 | } | |
2631 | ||
c57f56b7 | 2632 | //______________________________________________________________________________ |
2633 | void AliAnalysisAlien::SetDefaults() | |
2634 | { | |
2635 | // Set default values for everything. What cannot be filled will be left empty. | |
2636 | if (fGridJDL) delete fGridJDL; | |
2637 | fGridJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); | |
0f389141 | 2638 | fMergingJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); |
c57f56b7 | 2639 | fPrice = 1; |
2640 | fTTL = 30000; | |
2641 | fSplitMaxInputFileNumber = 100; | |
2642 | fMaxInitFailed = 0; | |
2643 | fMasterResubmitThreshold = 0; | |
bb885a9e | 2644 | fNtestFiles = 10; |
149d288c | 2645 | fNreplicas = 2; |
a8739e8a | 2646 | fRunRange[0] = 0; |
2647 | fRunRange[1] = 0; | |
8e3bd06a | 2648 | fRunPrefix = "%d"; |
319593fb | 2649 | fNrunsPerMaster = 1; |
16a4353c | 2650 | fMaxMergeFiles = 100; |
c57f56b7 | 2651 | fRunNumbers = ""; |
2652 | fExecutable = "analysis.sh"; | |
5aa94dc3 | 2653 | fExecutableCommand = "root -b -q -x"; |
c57f56b7 | 2654 | fArguments = ""; |
631c0b05 | 2655 | fExecutableArgs = ""; |
c57f56b7 | 2656 | fAnalysisMacro = "myAnalysis.C"; |
2657 | fAnalysisSource = ""; | |
2658 | fAdditionalLibs = ""; | |
2659 | fSplitMode = "se"; | |
2660 | fAPIVersion = ""; | |
2661 | fROOTVersion = ""; | |
2662 | fAliROOTVersion = ""; | |
2663 | fUser = ""; // Your alien user name | |
2664 | fGridWorkingDir = ""; | |
2665 | fGridDataDir = ""; // Can be like: /alice/sim/PDC_08a/LHC08c9/ | |
2666 | fDataPattern = "*AliESDs.root"; // Can be like: *AliESDs.root, */pass1/*AliESDs.root, ... | |
0df6ccf2 | 2667 | fFriendChainName = ""; |
c57f56b7 | 2668 | fGridOutputDir = "output"; |
b83f84f0 | 2669 | fOutputArchive = "log_archive.zip:std*@disk=1 root_archive.zip:*.root@disk=2"; |
c57f56b7 | 2670 | fOutputFiles = ""; // Like "AliAODs.root histos.root" |
2671 | fInputFormat = "xml-single"; | |
2672 | fJDLName = "analysis.jdl"; | |
c6cb3634 | 2673 | fJobTag = "Automatically generated analysis JDL"; |
bb885a9e | 2674 | fMergeExcludes = ""; |
0f389141 | 2675 | fMergeViaJDL = 0; |
348be253 | 2676 | SetUseCopy(kTRUE); |
2677 | SetCheckCopy(kTRUE); | |
149d288c | 2678 | SetDefaultOutputs(kTRUE); |
e1c22e21 | 2679 | fOverwriteMode = 1; |
c57f56b7 | 2680 | } |
2681 | ||
a41b2882 | 2682 | //______________________________________________________________________________ |
2683 | void AliAnalysisAlien::SetFriendChainName(const char *name, const char *libnames) | |
2684 | { | |
2685 | // Set file name for the chain of friends and optionally additional libs to be loaded. | |
2686 | // Libs should be separated by blancs. | |
2687 | fFriendChainName = name; | |
06f67114 | 2688 | fFriendChainName.ReplaceAll(",", " "); |
2689 | fFriendChainName.Strip(); | |
2690 | fFriendChainName.ReplaceAll(" ", " "); | |
2691 | ||
a41b2882 | 2692 | fFriendLibs = libnames; |
1a3f255c | 2693 | if (fFriendLibs.Length()) { |
2694 | if(!fFriendLibs.Contains(".so")) | |
2695 | Fatal("SetFriendChainName()", "You should provide explicit library names (with extension)"); | |
2696 | fFriendLibs.ReplaceAll(",", " "); | |
2697 | fFriendLibs.Strip(); | |
2698 | fFriendLibs.ReplaceAll(" ", " "); | |
a41b2882 | 2699 | } |
2700 | } | |
2701 | ||
874de7ea | 2702 | //______________________________________________________________________________ |
2703 | void AliAnalysisAlien::SetRootVersionForProof(const char *version) | |
2704 | { | |
2705 | // Obsolete method. Use SetROOTVersion instead | |
2706 | Warning("SetRootVersionForProof", "Obsolete. Use SetROOTVersion instead"); | |
95e16f01 | 2707 | if (fROOTVersion.IsNull()) SetROOTVersion(version); |
2708 | else Error("SetRootVersionForProof", "ROOT version already set to %s", fROOTVersion.Data()); | |
874de7ea | 2709 | } |
2710 | ||
0f389141 | 2711 | //______________________________________________________________________________ |
b3e07543 | 2712 | Bool_t AliAnalysisAlien::CheckMergedFiles(const char *filename, const char *aliendir, Int_t nperchunk, const char *jdl) |
0f389141 | 2713 | { |
b3e07543 | 2714 | // Checks current merge stage, makes xml for the next stage, counts number of files, submits next stage. |
2715 | // First check if the result is already in the output directory. | |
2716 | if (FileExists(Form("%s/%s",aliendir,filename))) { | |
2717 | printf("Final merged results found. Not merging again.\n"); | |
7c2cd90a | 2718 | return kFALSE; |
2719 | } | |
b3e07543 | 2720 | // Now check the last stage done. |
2721 | Int_t stage = 0; | |
2722 | while (1) { | |
2723 | if (!FileExists(Form("%s/Stage_%d.xml",aliendir, stage+1))) break; | |
2724 | stage++; | |
2725 | } | |
2726 | // Next stage of merging | |
2727 | stage++; | |
2728 | TString pattern = "*root_archive.zip"; | |
2729 | if (stage>1) pattern = Form("Stage_%d/*root_archive.zip", stage-1); | |
2730 | TGridResult *res = gGrid->Command(Form("find -x Stage_%d %s %s", stage, aliendir, pattern.Data())); | |
2731 | if (res) delete res; | |
2732 | // Write standard output to file | |
2733 | gROOT->ProcessLine(Form("gGrid->Stdout(); > %s", Form("Stage_%d.xml",stage))); | |
2734 | // Count the number of files inside | |
2735 | ifstream ifile; | |
2736 | ifile.open(Form("Stage_%d.xml",stage)); | |
2737 | if (!ifile.good()) { | |
2738 | ::Error("CheckMergedFiles", "Could not redirect result of the find command to file %s", Form("Stage_%d.xml",stage)); | |
7c2cd90a | 2739 | return kFALSE; |
b3e07543 | 2740 | } |
2741 | TString line; | |
2742 | Int_t nfiles = 0; | |
2743 | while (!ifile.eof()) { | |
2744 | ifile >> line; | |
2745 | if (line.Contains("/event")) nfiles++; | |
7c2cd90a | 2746 | } |
b3e07543 | 2747 | ifile.close(); |
2748 | if (!nfiles) { | |
2749 | ::Error("CheckMergedFiles", "Cannot start Stage_%d merging since Stage_%d did not produced yet output", stage, stage-1); | |
2750 | return kFALSE; | |
2751 | } else { | |
2752 | printf("=== Stage_%d produced %d files\n", stage-1, nfiles); | |
7ae54d70 | 2753 | } |
b3e07543 | 2754 | // Copy the file in the output directory |
2755 | printf("===> Copying collection %s in the output directory %s\n", Form("Stage_%d.xml",stage), aliendir); | |
43d5e2dc | 2756 | // TFile::Cp(Form("Stage_%d.xml",stage), Form("alien://%s/Stage_%d.xml",aliendir,stage)); |
6c395669 | 2757 | if (!copyLocal2Alien("CheckMergedFiles", Form("Stage_%d.xml",stage), |
2758 | Form("%s/Stage_%d.xml",aliendir,stage))) Fatal("","Terminating"); | |
b3e07543 | 2759 | // Check if this is the last stage to be done. |
2760 | Bool_t laststage = (nfiles<nperchunk); | |
2761 | if (fMaxMergeStages && stage>=fMaxMergeStages) laststage = kTRUE; | |
0ad3ea1f | 2762 | Int_t jobId = 0; |
b3e07543 | 2763 | if (laststage) { |
2764 | printf("### Submiting final merging stage %d\n", stage); | |
2765 | TString finalJDL = jdl; | |
2766 | finalJDL.ReplaceAll(".jdl", "_final.jdl"); | |
03335324 | 2767 | TString query = Form("submit %s %s %d", finalJDL.Data(), aliendir, stage); |
0ad3ea1f | 2768 | jobId = SubmitSingleJob(query); |
b3e07543 | 2769 | } else { |
2770 | printf("### Submiting merging stage %d\n", stage); | |
03335324 | 2771 | TString query = Form("submit %s %s %d", jdl, aliendir, stage); |
0ad3ea1f | 2772 | jobId = SubmitSingleJob(query); |
7c2cd90a | 2773 | } |
0ad3ea1f | 2774 | if (!jobId) return kFALSE; |
2775 | ||
2776 | if (!fGridJobIDs.IsNull()) fGridJobIDs.Append(" "); | |
2777 | fGridJobIDs.Append(Form("%d", jobId)); | |
2778 | if (!fGridStages.IsNull()) fGridStages.Append(" "); | |
2779 | fGridStages.Append(Form("%s_merge_stage%d", | |
2780 | laststage ? "final" : "partial", stage)); | |
2781 | ||
b3e07543 | 2782 | return kTRUE; |
2783 | } | |
7c2cd90a | 2784 | |
105631b5 | 2785 | //______________________________________________________________________________ |
2786 | AliAnalysisManager *AliAnalysisAlien::LoadAnalysisManager(const char *fname) | |
2787 | { | |
2788 | // Loat the analysis manager from a file. | |
2789 | TFile *file = TFile::Open(fname); | |
2790 | if (!file) { | |
2791 | ::Error("LoadAnalysisManager", "Cannot open file %s", fname); | |
2792 | return 0; | |
2793 | } | |
2794 | TIter nextkey(file->GetListOfKeys()); | |
2795 | AliAnalysisManager *mgr = 0; | |
2796 | TKey *key; | |
2797 | while ((key=(TKey*)nextkey())) { | |
2798 | if (!strcmp(key->GetClassName(), "AliAnalysisManager")) | |
2799 | mgr = (AliAnalysisManager*)file->Get(key->GetName()); | |
2800 | } | |
2801 | if (!mgr) | |
2802 | ::Error("LoadAnalysisManager", "No analysis manager found in file %s", fname); | |
2803 | return mgr; | |
2804 | } | |
2805 | ||
7c2cd90a | 2806 | //______________________________________________________________________________ |
2807 | Int_t AliAnalysisAlien::SubmitSingleJob(const char *query) | |
2808 | { | |
2809 | // Submits a single job corresponding to the query and returns job id. If 0 submission failed. | |
2810 | if (!gGrid) return 0; | |
2811 | printf("=> %s ------> ",query); | |
2812 | TGridResult *res = gGrid->Command(query); | |
2813 | if (!res) return 0; | |
2814 | TString jobId = res->GetKey(0,"jobId"); | |
2815 | delete res; | |
2816 | if (jobId.IsNull()) { | |
2817 | printf("submission failed. Reason:\n"); | |
2818 | gGrid->Stdout(); | |
2819 | gGrid->Stderr(); | |
2820 | ::Error("SubmitSingleJob", "Your query %s could not be submitted", query); | |
2821 | return 0; | |
2822 | } | |
0ad3ea1f | 2823 | Int_t ijobId = jobId.Atoi(); |
2824 | printf(" Job id: '%s' (%d)\n", jobId.Data(), ijobId); | |
2825 | return ijobId; | |
7c2cd90a | 2826 | } |
2827 | ||
ec5acdce | 2828 | //______________________________________________________________________________ |
2829 | Bool_t AliAnalysisAlien::MergeInfo(const char *output, const char *collection) | |
2830 | { | |
2831 | // Merges a collection of output files using concatenation. | |
d66aa2a9 | 2832 | TString scoll(collection); |
2833 | if (!scoll.Contains(".xml")) return kFALSE; | |
ec5acdce | 2834 | TGridCollection *coll = (TGridCollection*)gROOT->ProcessLine(Form("TAlienCollection::Open(\"%s\");", collection)); |
2835 | if (!coll) { | |
2836 | ::Error("MergeInfo", "Input XML %s collection empty.", collection); | |
2837 | return kFALSE; | |
2838 | } | |
2839 | // Iterate grid collection | |
2840 | TString outtmp; | |
2841 | Bool_t merged = kFALSE; | |
2842 | Int_t ifile = 0; | |
2843 | while (coll->Next()) { | |
2844 | TString fname = gSystem->DirName(coll->GetTURL()); | |
2845 | fname += "/"; | |
2846 | fname += output; | |
2847 | outtmp = Form("%d_%s", ifile, output); | |
2848 | if (!TFile::Cp(fname, outtmp)) { | |
2849 | ::Error("MergeInfo", "Could not copy %s", fname.Data()); | |
2850 | continue; | |
2851 | } | |
2852 | ifile++; | |
2853 | if (ifile<2) { | |
2854 | gSystem->Exec(Form("cp %s lastmerged", outtmp.Data())); | |
2855 | continue; | |
2856 | } | |
2857 | gSystem->Exec(Form("cat lastmerged %s > tempmerged", outtmp.Data())); | |
2858 | gSystem->Exec("cp tempmerged lastmerged"); | |
2859 | } | |
2860 | if (ifile) { | |
2861 | gSystem->Exec(Form("cp lastmerged %s", output)); | |
2862 | gSystem->Exec(Form("rm tempmerged lastmerged *_%s", output)); | |
2863 | merged = kTRUE; | |
2864 | } | |
2865 | return merged; | |
2866 | } | |
2867 | ||
7c2cd90a | 2868 | //______________________________________________________________________________ |
b3e07543 | 2869 | Bool_t AliAnalysisAlien::MergeOutput(const char *output, const char *basedir, Int_t nmaxmerge, Int_t stage) |
7c2cd90a | 2870 | { |
b3e07543 | 2871 | // Merge given output files from basedir. Basedir can be an alien output directory |
2872 | // but also an xml file with root_archive.zip locations. The file merger will merge nmaxmerge | |
2873 | // files in a group (ignored for xml input). Merging can be done in stages: | |
2874 | // stage=0 : will merge all existing files in a single stage, supporting resume if run locally | |
2875 | // stage=1 : works with an xml of all root_archive.zip in the output directory | |
2876 | // stage>1 : works with an xml of all root_archive.zip in the Stage_<n-1> directory | |
a2f5fc01 | 2877 | TString outputFile = output; |
0f389141 | 2878 | TString command; |
a2f5fc01 | 2879 | TString outputChunk; |
2880 | TString previousChunk = ""; | |
b3e07543 | 2881 | TObjArray *listoffiles = new TObjArray(); |
2882 | // listoffiles->SetOwner(); | |
a2f5fc01 | 2883 | Int_t countChunk = 0; |
2884 | Int_t countZero = nmaxmerge; | |
0f389141 | 2885 | Bool_t merged = kTRUE; |
d66aa2a9 | 2886 | Bool_t isGrid = kTRUE; |
a2f5fc01 | 2887 | Int_t index = outputFile.Index("@"); |
2888 | if (index > 0) outputFile.Remove(index); | |
7c2cd90a | 2889 | TString inputFile = outputFile; |
b3e07543 | 2890 | TString sbasedir = basedir; |
2891 | if (sbasedir.Contains(".xml")) { | |
2892 | // Merge files pointed by the xml - ignore nmaxmerge and set ichunk to 0 | |
2893 | nmaxmerge = 9999999; | |
2894 | TGridCollection *coll = (TGridCollection*)gROOT->ProcessLine(Form("TAlienCollection::Open(\"%s\");", basedir)); | |
2895 | if (!coll) { | |
2896 | ::Error("MergeOutput", "Input XML collection empty."); | |
2897 | return kFALSE; | |
2898 | } | |
2899 | // Iterate grid collection | |
2900 | while (coll->Next()) { | |
2901 | TString fname = gSystem->DirName(coll->GetTURL()); | |
2902 | fname += "/"; | |
2903 | fname += inputFile; | |
2904 | listoffiles->Add(new TNamed(fname.Data(),"")); | |
2905 | } | |
ffbe06b9 | 2906 | } else if (sbasedir.Contains(".txt")) { |
d66aa2a9 | 2907 | // The file having the .txt extension is expected to contain a list of |
2908 | // folders where the output files will be looked. For alien folders, | |
2909 | // the full folder LFN is expected (starting with alien://) | |
ffbe06b9 | 2910 | // Assume lfn's on each line |
2911 | TString line; | |
2912 | ifstream in; | |
2913 | in.open(sbasedir); | |
d66aa2a9 | 2914 | if (in.fail()) { |
2915 | ::Error("MergeOutput", "File %s cannot be opened. Merging stopped." ,sbasedir.Data()); | |
2916 | return kTRUE; | |
2917 | } | |
ffbe06b9 | 2918 | Int_t nfiles = 0; |
2919 | while (in.good()) { | |
2920 | in >> line; | |
2921 | if (line.IsNull() || line.BeginsWith("#")) continue; | |
d66aa2a9 | 2922 | line.Strip(); |
2923 | if (!line.Contains("alien:")) isGrid = kFALSE; | |
2924 | line += "/"; | |
2925 | line += outputFile; | |
ffbe06b9 | 2926 | nfiles++; |
2927 | listoffiles->Add(new TNamed(line.Data(),"")); | |
2928 | } | |
d66aa2a9 | 2929 | in.close(); |
ffbe06b9 | 2930 | if (!nfiles) { |
2931 | ::Error("MergeOutput","Input file %s contains no files to be merged\n", sbasedir.Data()); | |
2932 | delete listoffiles; | |
2933 | return kFALSE; | |
2934 | } | |
b3e07543 | 2935 | } else { |
2936 | command = Form("find %s/ *%s", basedir, inputFile.Data()); | |
2937 | printf("command: %s\n", command.Data()); | |
2938 | TGridResult *res = gGrid->Command(command); | |
2939 | if (!res) { | |
2940 | ::Error("MergeOutput","No result for the find command\n"); | |
2941 | delete listoffiles; | |
2942 | return kFALSE; | |
2943 | } | |
2944 | TIter nextmap(res); | |
2945 | TMap *map = 0; | |
2946 | while ((map=(TMap*)nextmap())) { | |
2947 | TObjString *objs = dynamic_cast<TObjString*>(map->GetValue("turl")); | |
2948 | if (!objs || !objs->GetString().Length()) { | |
2949 | // Nothing found - skip this output | |
2950 | delete res; | |
2951 | delete listoffiles; | |
2952 | return kFALSE; | |
2953 | } | |
2954 | listoffiles->Add(new TNamed(objs->GetName(),"")); | |
2955 | } | |
2956 | delete res; | |
2957 | } | |
2958 | if (!listoffiles->GetEntries()) { | |
7c2cd90a | 2959 | ::Error("MergeOutput","No result for the find command\n"); |
b3e07543 | 2960 | delete listoffiles; |
0f389141 | 2961 | return kFALSE; |
2962 | } | |
2963 | ||
2964 | TFileMerger *fm = 0; | |
b3e07543 | 2965 | TIter next0(listoffiles); |
2966 | TObjArray *listoffilestmp = new TObjArray(); | |
2967 | listoffilestmp->SetOwner(); | |
2968 | TObject *nextfile; | |
2969 | TString snextfile; | |
2970 | // Keep only the files at upper level | |
2971 | Int_t countChar = 0; | |
2972 | while ((nextfile=next0())) { | |
2973 | snextfile = nextfile->GetName(); | |
2974 | Int_t crtCount = snextfile.CountChar('/'); | |
2975 | if (nextfile == listoffiles->First()) countChar = crtCount; | |
2976 | if (crtCount < countChar) countChar = crtCount; | |
2977 | } | |
2978 | next0.Reset(); | |
2979 | while ((nextfile=next0())) { | |
2980 | snextfile = nextfile->GetName(); | |
2981 | Int_t crtCount = snextfile.CountChar('/'); | |
2982 | if (crtCount > countChar) { | |
2983 | delete nextfile; | |
2984 | continue; | |
2985 | } | |
2986 | listoffilestmp->Add(nextfile); | |
2987 | } | |
2988 | delete listoffiles; | |
2989 | listoffiles = listoffilestmp; // Now contains 'good' files | |
2990 | listoffiles->Print(); | |
2991 | TIter next(listoffiles); | |
7c2cd90a | 2992 | // Check if there is a merge operation to resume. Works only for stage 0 or 1. |
a2f5fc01 | 2993 | outputChunk = outputFile; |
2994 | outputChunk.ReplaceAll(".root", "_*.root"); | |
0f389141 | 2995 | // Check for existent temporary merge files |
e1c22e21 | 2996 | // Check overwrite mode and remove previous partial results if needed |
7c2cd90a | 2997 | // Preserve old merging functionality for stage 0. |
2998 | if (stage==0) { | |
2999 | if (!gSystem->Exec(Form("ls %s 2>/dev/null", outputChunk.Data()))) { | |
3000 | while (1) { | |
3001 | // Skip as many input files as in a chunk | |
2ea55496 | 3002 | for (Int_t counter=0; counter<nmaxmerge; counter++) { |
b3e07543 | 3003 | nextfile = next(); |
3004 | if (!nextfile) { | |
2ea55496 | 3005 | ::Error("MergeOutput", "Mismatch found. Please remove partial merged files from local dir."); |
b3e07543 | 3006 | delete listoffiles; |
2ea55496 | 3007 | return kFALSE; |
3008 | } | |
b3e07543 | 3009 | snextfile = nextfile->GetName(); |
7c2cd90a | 3010 | } |
3011 | outputChunk = outputFile; | |
3012 | outputChunk.ReplaceAll(".root", Form("_%04d.root", countChunk)); | |
3013 | countChunk++; | |
3014 | if (gSystem->AccessPathName(outputChunk)) continue; | |
3015 | // Merged file with chunks up to <countChunk> found | |
3016 | ::Info("MergeOutput", "Resume merging of <%s> from <%s>\n", outputFile.Data(), outputChunk.Data()); | |
3017 | previousChunk = outputChunk; | |
3018 | break; | |
3019 | } | |
3020 | } | |
3021 | countZero = nmaxmerge; | |
3022 | ||
b3e07543 | 3023 | while ((nextfile=next())) { |
3024 | snextfile = nextfile->GetName(); | |
2ea55496 | 3025 | // Loop 'find' results and get next LFN |
7c2cd90a | 3026 | if (countZero == nmaxmerge) { |
3027 | // First file in chunk - create file merger and add previous chunk if any. | |
d66aa2a9 | 3028 | fm = new TFileMerger(isGrid); |
7c2cd90a | 3029 | fm->SetFastMethod(kTRUE); |
3030 | if (previousChunk.Length()) fm->AddFile(previousChunk.Data()); | |
3031 | outputChunk = outputFile; | |
3032 | outputChunk.ReplaceAll(".root", Form("_%04d.root", countChunk)); | |
3033 | } | |
3034 | // If last file found, put merged results in the output file | |
b3e07543 | 3035 | if (nextfile == listoffiles->Last()) outputChunk = outputFile; |
7c2cd90a | 3036 | // Add file to be merged and decrement chunk counter. |
b3e07543 | 3037 | fm->AddFile(snextfile); |
7c2cd90a | 3038 | countZero--; |
b3e07543 | 3039 | if (countZero==0 || nextfile == listoffiles->Last()) { |
7c2cd90a | 3040 | if (!fm->GetMergeList() || !fm->GetMergeList()->GetSize()) { |
3041 | // Nothing found - skip this output | |
3042 | ::Warning("MergeOutput", "No <%s> files found.", inputFile.Data()); | |
b3e07543 | 3043 | merged = kFALSE; |
3044 | break; | |
7c2cd90a | 3045 | } |
3046 | fm->OutputFile(outputChunk); | |
3047 | // Merge the outputs, then go to next chunk | |
3048 | if (!fm->Merge()) { | |
3049 | ::Error("MergeOutput", "Could not merge all <%s> files", outputFile.Data()); | |
b3e07543 | 3050 | merged = kFALSE; |
3051 | break; | |
7c2cd90a | 3052 | } else { |
3053 | ::Info("MergeOutputs", "\n##### Merged %d output files to <%s>", fm->GetMergeList()->GetSize(), outputChunk.Data()); | |
3054 | gSystem->Unlink(previousChunk); | |
3055 | } | |
b3e07543 | 3056 | if (nextfile == listoffiles->Last()) break; |
7c2cd90a | 3057 | countChunk++; |
3058 | countZero = nmaxmerge; | |
3059 | previousChunk = outputChunk; | |
0f389141 | 3060 | } |
0f389141 | 3061 | } |
b3e07543 | 3062 | delete listoffiles; |
3063 | delete fm; | |
7c2cd90a | 3064 | return merged; |
3065 | } | |
3066 | // Merging stage different than 0. | |
3067 | // Move to the begining of the requested chunk. | |
d66aa2a9 | 3068 | fm = new TFileMerger(isGrid); |
7c2cd90a | 3069 | fm->SetFastMethod(kTRUE); |
b3e07543 | 3070 | while ((nextfile=next())) fm->AddFile(nextfile->GetName()); |
3071 | delete listoffiles; | |
7c2cd90a | 3072 | if (!fm->GetMergeList() || !fm->GetMergeList()->GetSize()) { |
3073 | // Nothing found - skip this output | |
3074 | ::Warning("MergeOutput", "No <%s> files found.", inputFile.Data()); | |
3075 | delete fm; | |
3076 | return kFALSE; | |
3077 | } | |
b3e07543 | 3078 | fm->OutputFile(outputFile); |
7c2cd90a | 3079 | // Merge the outputs |
3080 | if (!fm->Merge()) { | |
3081 | ::Error("MergeOutput", "Could not merge all <%s> files", outputFile.Data()); | |
3082 | delete fm; | |
3083 | return kFALSE; | |
3084 | } else { | |
b3e07543 | 3085 | ::Info("MergeOutput", "\n##### Merged %d output files to <%s>", fm->GetMergeList()->GetSize(), outputFile.Data()); |
0f389141 | 3086 | } |
7c2cd90a | 3087 | delete fm; |
3088 | return kTRUE; | |
0f389141 | 3089 | } |
3090 | ||
c57f56b7 | 3091 | //______________________________________________________________________________ |
3092 | Bool_t AliAnalysisAlien::MergeOutputs() | |
3093 | { | |
3094 | // Merge analysis outputs existing in the AliEn space. | |
3095 | if (TestBit(AliAnalysisGrid::kTest)) return kTRUE; | |
3096 | if (TestBit(AliAnalysisGrid::kOffline)) return kFALSE; | |
3097 | if (!Connect()) { | |
3098 | Error("MergeOutputs", "Cannot merge outputs without grid connection. Terminate will NOT be executed"); | |
3099 | return kFALSE; | |
0f389141 | 3100 | } |
c9e8f7fd | 3101 | if (fMergeViaJDL) { |
3102 | if (!TestBit(AliAnalysisGrid::kMerge)) { | |
3103 | Info("MergeOutputs", "### Re-run with <MergeViaJDL> option in terminate mode of the plugin to submit merging jobs ###"); | |
3104 | return kFALSE; | |
3105 | } | |
3106 | if (fProductionMode) { | |
3107 | Info("MergeOutputs", "### Merging will be submitted by LPM manager... ###"); | |
3108 | return kFALSE; | |
3109 | } | |
0f389141 | 3110 | Info("MergeOutputs", "Submitting merging JDL"); |
a03be957 | 3111 | if (!SubmitMerging()) return kFALSE; |
0f389141 | 3112 | Info("MergeOutputs", "### Re-run with <MergeViaJDL> off to collect results after merging jobs are done ###"); |
c9e8f7fd | 3113 | Info("MergeOutputs", "### The Terminate() method is executed by the merging jobs"); |
001cb79e | 3114 | return kFALSE; |
c57f56b7 | 3115 | } |
3116 | // Get the output path | |
dc030a24 | 3117 | if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("%s/%s/%s", gGrid->GetHomeDirectory(), fGridWorkingDir.Data(), fGridOutputDir.Data()); |
923e2ca5 | 3118 | if (!DirectoryExists(fGridOutputDir)) { |
c57f56b7 | 3119 | Error("MergeOutputs", "Grid output directory %s not found. Terminate() will NOT be executed", fGridOutputDir.Data()); |
3120 | return kFALSE; | |
3121 | } | |
3122 | if (!fOutputFiles.Length()) { | |
3123 | Error("MergeOutputs", "No output file names defined. Are you running the right AliAnalysisAlien configuration ?"); | |
3124 | return kFALSE; | |
0f389141 | 3125 | } |
3126 | // Check if fast read option was requested | |
e1c22e21 | 3127 | Info("MergeOutputs", "Started local merging of output files from: alien://%s \ |
3128 | \n======= overwrite mode = %d", fGridOutputDir.Data(), (Int_t)fOverwriteMode); | |
0f389141 | 3129 | if (fFastReadOption) { |
d3339be3 | 3130 | Warning("MergeOutputs", "You requested FastRead option. Using xrootd flags to reduce timeouts. This may skip some files that could be accessed ! \ |
3131 | \n+++ NOTE: To disable this option, use: plugin->SetFastReadOption(kFALSE)"); | |
b3e07543 | 3132 | gEnv->SetValue("XNet.ConnectTimeout",50); |
3133 | gEnv->SetValue("XNet.RequestTimeout",50); | |
0f389141 | 3134 | gEnv->SetValue("XNet.MaxRedirectCount",2); |
b3e07543 | 3135 | gEnv->SetValue("XNet.ReconnectTimeout",50); |
0f389141 | 3136 | gEnv->SetValue("XNet.FirstConnectMaxCnt",1); |
c57f56b7 | 3137 | } |
e8b839ab | 3138 | // Make sure we change the temporary directory |
3139 | gSystem->Setenv("TMPDIR", gSystem->pwd()); | |
70c52cf3 | 3140 | // Set temporary compilation directory to current one |
3141 | gSystem->SetBuildDir(gSystem->pwd(), kTRUE); | |
149d288c | 3142 | TObjArray *list = fOutputFiles.Tokenize(","); |
c57f56b7 | 3143 | TIter next(list); |
3144 | TObjString *str; | |
a2f5fc01 | 3145 | TString outputFile; |
c57f56b7 | 3146 | Bool_t merged = kTRUE; |
3147 | while((str=(TObjString*)next())) { | |
a2f5fc01 | 3148 | outputFile = str->GetString(); |
3149 | Int_t index = outputFile.Index("@"); | |
3150 | if (index > 0) outputFile.Remove(index); | |
3151 | TString outputChunk = outputFile; | |
3152 | outputChunk.ReplaceAll(".root", "_*.root"); | |
319593fb | 3153 | // Skip already merged outputs |
a2f5fc01 | 3154 | if (!gSystem->AccessPathName(outputFile)) { |
e1c22e21 | 3155 | if (fOverwriteMode) { |
a2f5fc01 | 3156 | Info("MergeOutputs", "Overwrite mode. Existing file %s was deleted.", outputFile.Data()); |
3157 | gSystem->Unlink(outputFile); | |
3158 | if (!gSystem->Exec(Form("ls %s 2>/dev/null", outputChunk.Data()))) { | |
e1c22e21 | 3159 | Info("MergeOutput", "Overwrite mode: partial merged files %s will removed", |
a2f5fc01 | 3160 | outputChunk.Data()); |
3161 | gSystem->Exec(Form("rm -f %s", outputChunk.Data())); | |
e1c22e21 | 3162 | } |
3163 | } else { | |
a2f5fc01 | 3164 | Info("MergeOutputs", "Output file <%s> found. Not merging again.", outputFile.Data()); |
e1c22e21 | 3165 | continue; |
3166 | } | |
3167 | } else { | |
a2f5fc01 | 3168 | if (!gSystem->Exec(Form("ls %s 2>/dev/null", outputChunk.Data()))) { |
e1c22e21 | 3169 | Info("MergeOutput", "Overwrite mode: partial merged files %s will removed", |
a2f5fc01 | 3170 | outputChunk.Data()); |
3171 | gSystem->Exec(Form("rm -f %s", outputChunk.Data())); | |
e1c22e21 | 3172 | } |
3173 | } | |
37d21c01 | 3174 | if (fMergeExcludes.Contains(outputFile.Data()) || |
3175 | fRegisterExcludes.Contains(outputFile.Data())) continue; | |
16a4353c | 3176 | // Perform a 'find' command in the output directory, looking for registered outputs |
a2f5fc01 | 3177 | merged = MergeOutput(outputFile, fGridOutputDir, fMaxMergeFiles); |
0f389141 | 3178 | if (!merged) { |
3179 | Error("MergeOutputs", "Terminate() will NOT be executed"); | |
09d5920f | 3180 | delete list; |
3181 | return kFALSE; | |
ff07ec61 | 3182 | } |
3183 | TFile *fileOpened = (TFile*)gROOT->GetListOfFiles()->FindObject(outputFile); | |
3184 | if (fileOpened) fileOpened->Close(); | |
c57f56b7 | 3185 | } |
09d5920f | 3186 | delete list; |
0f389141 | 3187 | return kTRUE; |
c57f56b7 | 3188 | } |
3189 | ||
bb885a9e | 3190 | //______________________________________________________________________________ |
3191 | void AliAnalysisAlien::SetDefaultOutputs(Bool_t flag) | |
3192 | { | |
3193 | // Use the output files connected to output containers from the analysis manager | |
3194 | // rather than the files defined by SetOutputFiles | |
3195 | if (flag && !TObject::TestBit(AliAnalysisGrid::kDefaultOutputs)) | |
205b201f | 3196 | Info("SetDefaultOutputs", "Plugin will use the output files taken from analysis manager"); |
bb885a9e | 3197 | TObject::SetBit(AliAnalysisGrid::kDefaultOutputs, flag); |
3198 | } | |
3199 | ||
149d288c | 3200 | //______________________________________________________________________________ |
3201 | void AliAnalysisAlien::SetOutputFiles(const char *list) | |
3202 | { | |
3203 | // Manually set the output files list. | |
3204 | // Removes duplicates. Not allowed if default outputs are not disabled. | |
3205 | if (TObject::TestBit(AliAnalysisGrid::kDefaultOutputs)) { | |
3206 | Fatal("SetOutputFiles", "You have to explicitly call SetDefaultOutputs(kFALSE) to manually set output files."); | |
3207 | return; | |
3208 | } | |
3209 | Info("SetOutputFiles", "Output file list is set manually - you are on your own."); | |
3210 | fOutputFiles = ""; | |
3211 | TString slist = list; | |
3212 | if (slist.Contains("@")) Warning("SetOutputFiles","The plugin does not allow explicit SE's. Please use: SetNumberOfReplicas() instead."); | |
3213 | TObjArray *arr = slist.Tokenize(" "); | |
3214 | TObjString *os; | |
3215 | TIter next(arr); | |
3216 | TString sout; | |
3217 | while ((os=(TObjString*)next())) { | |
3218 | sout = os->GetString(); | |
3219 | if (sout.Index("@")>0) sout.Remove(sout.Index("@")); | |
3220 | if (fOutputFiles.Contains(sout)) continue; | |
3221 | if (!fOutputFiles.IsNull()) fOutputFiles += ","; | |
3222 | fOutputFiles += sout; | |
3223 | } | |
3224 | delete arr; | |
f790bc1b | 3225 | } |
149d288c | 3226 | |
3227 | //______________________________________________________________________________ | |
3228 | void AliAnalysisAlien::SetOutputArchive(const char *list) | |
3229 | { | |
3230 | // Manually set the output archive list. Free text - you are on your own... | |
3231 | // Not allowed if default outputs are not disabled. | |
3232 | if (TObject::TestBit(AliAnalysisGrid::kDefaultOutputs)) { | |
3233 | Fatal("SetOutputArchive", "You have to explicitly call SetDefaultOutputs(kFALSE) to manually set the output archives."); | |
3234 | return; | |
3235 | } | |
3236 | Info("SetOutputArchive", "Output archive is set manually - you are on your own."); | |
3237 | fOutputArchive = list; | |
3238 | } | |
3239 | ||
3240 | //______________________________________________________________________________ | |
3241 | void AliAnalysisAlien::SetPreferedSE(const char */*se*/) | |
3242 | { | |
3243 | // Setting a prefered output SE is not allowed anymore. | |
3244 | Warning("SetPreferedSE", "Setting a preferential SE is not allowed anymore via the plugin. Use SetNumberOfReplicas() and SetDefaultOutputs()"); | |
3245 | } | |
3246 | ||
28ce6c9c | 3247 | //______________________________________________________________________________ |
3248 | void AliAnalysisAlien::SetProofParameter(const char *pname, const char *value) | |
3249 | { | |
3250 | // Set some PROOF special parameter. | |
3251 | TPair *pair = dynamic_cast<TPair*>(fProofParam.FindObject(pname)); | |
3252 | if (pair) { | |
3253 | TObject *old = pair->Key(); | |
3254 | TObject *val = pair->Value(); | |
3255 | fProofParam.Remove(old); | |
3256 | delete old; | |
3257 | delete val; | |
3258 | } | |
3259 | fProofParam.Add(new TObjString(pname), new TObjString(value)); | |
3260 | } | |
3261 | ||
3262 | //______________________________________________________________________________ | |
3263 | const char *AliAnalysisAlien::GetProofParameter(const char *pname) const | |
3264 | { | |
3265 | // Returns a special PROOF parameter. | |
3266 | TPair *pair = dynamic_cast<TPair*>(fProofParam.FindObject(pname)); | |
3267 | if (!pair) return 0; | |
3268 | return pair->Value()->GetName(); | |
3269 | } | |
3270 | ||
5513444a | 3271 | //______________________________________________________________________________ |
3272 | Bool_t AliAnalysisAlien::StartAnalysis(Long64_t /*nentries*/, Long64_t /*firstEntry*/) | |
c57f56b7 | 3273 | { |
3274 | // Start remote grid analysis. | |
3bdcb562 | 3275 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); |
3276 | Bool_t testMode = TestBit(AliAnalysisGrid::kTest); | |
3277 | if (!mgr || !mgr->IsInitialized()) { | |
3278 | Error("StartAnalysis", "You need an initialized analysis manager for this"); | |
3279 | return kFALSE; | |
3280 | } | |
3281 | // Are we in PROOF mode ? | |
3282 | if (mgr->IsProofMode()) { | |
baa34407 | 3283 | if (testMode) Info("StartAnalysis", "##### Starting PROOF analysis with Proof Lite via the plugin #####"); |
3284 | else Info("StartAnalysis", "##### Starting PROOF analysis on cluster <%s> via the plugin #####", fProofCluster.Data()); | |
3bdcb562 | 3285 | if (fProofCluster.IsNull()) { |
3286 | Error("StartAnalysis", "You need to specify the proof cluster name via SetProofCluster"); | |
3287 | return kFALSE; | |
3288 | } | |
3289 | if (fProofDataSet.IsNull() && !testMode) { | |
3290 | Error("StartAnalysis", "You need to specify a dataset using SetProofDataSet()"); | |
3291 | return kFALSE; | |
3292 | } | |
3293 | // Set the needed environment | |
3294 | gEnv->SetValue("XSec.GSI.DelegProxy","2"); | |
3295 | // Do we need to reset PROOF ? The success of the Reset operation cannot be checked | |
3296 | if (fProofReset && !testMode) { | |
3297 | if (fProofReset==1) { | |
3298 | Info("StartAnalysis", "Sending soft reset signal to proof cluster %s", fProofCluster.Data()); | |
3299 | gROOT->ProcessLine(Form("TProof::Reset(\"%s\", kFALSE);", fProofCluster.Data())); | |
3300 | } else { | |
3301 | Info("StartAnalysis", "Sending hard reset signal to proof cluster %s", fProofCluster.Data()); | |
3302 | gROOT->ProcessLine(Form("TProof::Reset(\"%s\", kTRUE);", fProofCluster.Data())); | |
3303 | } | |
3304 | Info("StartAnalysis", "Stopping the analysis. Please use SetProofReset(0) to resume."); | |
3305 | return kFALSE; | |
3306 | } | |
baa34407 | 3307 | |
3308 | if (!testMode) { | |
3309 | // Check if there is an old active session | |
3310 | Long_t nsessions = gROOT->ProcessLine(Form("TProof::Mgr(\"%s\")->QuerySessions(\"\")->GetEntries();", fProofCluster.Data())); | |
3311 | if (nsessions) { | |
3312 | Error("StartAnalysis","You have to reset your old session first\n"); | |
3313 | return kFALSE; | |
3314 | } | |
53911ca6 | 3315 | } |
3bdcb562 | 3316 | // Do we need to change the ROOT version ? The success of this cannot be checked. |
874de7ea | 3317 | if (!fROOTVersion.IsNull() && !testMode) { |
cbccef47 | 3318 | gROOT->ProcessLine(Form("TProof::Mgr(\"%s\")->SetROOTVersion(\"VO_ALICE@ROOT::%s\");", |
874de7ea | 3319 | fProofCluster.Data(), fROOTVersion.Data())); |
3bdcb562 | 3320 | } |
3321 | // Connect to PROOF and check the status | |
3322 | Long_t proof = 0; | |
27734f0e | 3323 | TString sworkers; |
3324 | if (fNproofWorkersPerSlave) sworkers = Form("workers=%dx", fNproofWorkersPerSlave); | |
3325 | else if (fNproofWorkers) sworkers = Form("workers=%d", fNproofWorkers); | |
3bdcb562 | 3326 | if (!testMode) { |
27734f0e | 3327 | if (!sworkers.IsNull()) |
3328 | proof = gROOT->ProcessLine(Form("TProof::Open(\"%s\", \"%s\");", fProofCluster.Data(), sworkers.Data())); | |
3bdcb562 | 3329 | else |
3330 | proof = gROOT->ProcessLine(Form("TProof::Open(\"%s\");", fProofCluster.Data())); | |
3331 | } else { | |
3332 | proof = gROOT->ProcessLine("TProof::Open(\"\");"); | |
3333 | if (!proof) { | |
3334 | Error("StartAnalysis", "Could not start PROOF in test mode"); | |
3335 | return kFALSE; | |
3336 | } | |
3337 | } | |
3338 | if (!proof) { | |
3339 | Error("StartAnalysis", "Could not connect to PROOF cluster <%s>", fProofCluster.Data()); | |
3340 | return kFALSE; | |
3341 | } | |
27734f0e | 3342 | if (fNproofWorkersPerSlave*fNproofWorkers > 0) |
3343 | gROOT->ProcessLine(Form("gProof->SetParallel(%d);", fNproofWorkers)); | |
28ce6c9c | 3344 | // Set proof special parameters if any |
3345 | TIter nextpp(&fProofParam); | |
3346 | TObject *proofparam; | |
3347 | while ((proofparam=nextpp())) { | |
3348 | TString svalue = GetProofParameter(proofparam->GetName()); | |
3349 | gROOT->ProcessLine(Form("gProof->SetParameter(\"%s\",%s);", proofparam->GetName(), svalue.Data())); | |
3350 | } | |
3bdcb562 | 3351 | // Is dataset existing ? |
3352 | if (!testMode) { | |
3353 | TString dataset = fProofDataSet; | |
3354 | Int_t index = dataset.Index("#"); | |
3355 | if (index>=0) dataset.Remove(index); | |
830acc4c | 3356 | // if (!gROOT->ProcessLine(Form("gProof->ExistsDataSet(\"%s\");",fProofDataSet.Data()))) { |
3357 | // Error("StartAnalysis", "Dataset %s not existing", fProofDataSet.Data()); | |
3358 | // return kFALSE; | |
3359 | // } | |
3360 | // Info("StartAnalysis", "Dataset %s found", dataset.Data()); | |
3bdcb562 | 3361 | } |
3362 | // Is ClearPackages() needed ? | |
3363 | if (TestSpecialBit(kClearPackages)) { | |
3364 | Info("StartAnalysis", "ClearPackages signal sent to PROOF. Use SetClearPackages(kFALSE) to reset this."); | |
3365 | gROOT->ProcessLine("gProof->ClearPackages();"); | |
3366 | } | |
3367 | // Is a given aliroot mode requested ? | |
3368 | TList optionsList; | |
1ac846e9 | 3369 | TString parLibs; |
830acc4c | 3370 | if (!fAliRootMode.IsNull()) { |
3bdcb562 | 3371 | TString alirootMode = fAliRootMode; |
3372 | if (alirootMode == "default") alirootMode = ""; | |
3373 | Info("StartAnalysis", "You are requesting AliRoot mode: %s", fAliRootMode.Data()); | |
3374 | optionsList.SetOwner(); | |
3375 | optionsList.Add(new TNamed("ALIROOT_MODE", alirootMode.Data())); | |
3376 | // Check the additional libs to be loaded | |
3377 | TString extraLibs; | |
1ac846e9 | 3378 | Bool_t parMode = kFALSE; |
dc1ffbcb | 3379 | if (!alirootMode.IsNull()) extraLibs = "ANALYSIS:OADB:ANALYSISalice"; |
3bdcb562 | 3380 | // Parse the extra libs for .so |
3381 | if (fAdditionalLibs.Length()) { | |
a41b2882 | 3382 | TString additionalLibs = fAdditionalLibs; |
3383 | additionalLibs.Strip(); | |
3384 | if (additionalLibs.Length() && fFriendLibs.Length()) | |
3385 | additionalLibs += " "; | |
3386 | additionalLibs += fFriendLibs; | |
3387 | TObjArray *list = additionalLibs.Tokenize(" "); | |
3bdcb562 | 3388 | TIter next(list); |
3389 | TObjString *str; | |
1ac846e9 | 3390 | while((str=(TObjString*)next())) { |
3391 | if (str->GetString().Contains(".so")) { | |
3392 | if (parMode) { | |
3393 | Warning("StartAnalysis", "Plugin does not support loading libs after par files in PROOF mode. Library %s and following will not load on workers", str->GetName()); | |
3394 | break; | |
3395 | } | |
3396 | TString stmp = str->GetName(); | |
3397 | if (stmp.BeginsWith("lib")) stmp.Remove(0,3); | |
3398 | stmp.ReplaceAll(".so",""); | |
3399 | if (!extraLibs.IsNull()) extraLibs += ":"; | |
3400 | extraLibs += stmp; | |
3401 | continue; | |
3402 | } | |
3403 | if (str->GetString().Contains(".par")) { | |
3404 | // The first par file found in the list will not allow any further .so | |
3405 | parMode = kTRUE; | |
3406 | if (!parLibs.IsNull()) parLibs += ":"; | |
3407 | parLibs += str->GetName(); | |
3408 | continue; | |
3409 | } | |
3bdcb562 | 3410 | } |
3411 | if (list) delete list; | |
3412 | } | |
a41b2882 | 3413 | if (!extraLibs.IsNull()) { |
3414 | Info("StartAnalysis", "Adding extra libs: %s",extraLibs.Data()); | |
3415 | optionsList.Add(new TNamed("ALIROOT_EXTRA_LIBS",extraLibs.Data())); | |
3416 | } | |
830acc4c | 3417 | // Check extra includes |
3418 | if (!fIncludePath.IsNull()) { | |
3419 | TString includePath = fIncludePath; | |
3420 | includePath.ReplaceAll(" ",":"); | |
dc030a24 | 3421 | includePath.ReplaceAll("$ALICE_ROOT/",""); |
3422 | includePath.ReplaceAll("${ALICE_ROOT}/",""); | |
8ddad121 | 3423 | includePath.ReplaceAll("-I",""); |
dc030a24 | 3424 | includePath.Remove(TString::kTrailing, ':'); |
830acc4c | 3425 | Info("StartAnalysis", "Adding extra includes: %s",includePath.Data()); |
3426 | optionsList.Add(new TNamed("ALIROOT_EXTRA_INCLUDES",includePath.Data())); | |
3427 | } | |
27734f0e | 3428 | // Check if connection to grid is requested |
3429 | if (TestSpecialBit(kProofConnectGrid)) | |
3430 | optionsList.Add(new TNamed("ALIROOT_ENABLE_ALIEN", "1")); | |
830acc4c | 3431 | // Enable AliRoot par |
3432 | if (testMode) { | |
3433 | // Enable proof lite package | |
3434 | TString alirootLite = gSystem->ExpandPathName("$ALICE_ROOT/ANALYSIS/macros/AliRootProofLite.par"); | |
3435 | for (Int_t i=0; i<optionsList.GetSize(); i++) { | |
3436 | TNamed *obj = (TNamed*)optionsList.At(i); | |
3437 | printf("%s %s\n", obj->GetName(), obj->GetTitle()); | |
3438 | } | |
3439 | if (!gROOT->ProcessLine(Form("gProof->UploadPackage(\"%s\");",alirootLite.Data())) | |
8ddad121 | 3440 | && !gROOT->ProcessLine(Form("gProof->EnablePackage(\"%s\", (TList*)%p);",alirootLite.Data(),&optionsList))) { |
830acc4c | 3441 | Info("StartAnalysis", "AliRootProofLite enabled"); |
3442 | } else { | |
3443 | Error("StartAnalysis", "There was an error trying to enable package AliRootProofLite.par"); | |
3444 | return kFALSE; | |
3445 | } | |
3446 | } else { | |
dc030a24 | 3447 | if ( ! fAliROOTVersion.IsNull() ) { |
3448 | if (gROOT->ProcessLine(Form("gProof->EnablePackage(\"VO_ALICE@AliRoot::%s\", (TList*)%p, kTRUE);", | |
3449 | fAliROOTVersion.Data(), &optionsList))) { | |
3450 | Error("StartAnalysis", "There was an error trying to enable package VO_ALICE@AliRoot::%s", fAliROOTVersion.Data()); | |
3451 | return kFALSE; | |
3452 | } | |
3453 | } | |
27734f0e | 3454 | } |
1ac846e9 | 3455 | // Enable first par files from fAdditionalLibs |
3456 | if (!parLibs.IsNull()) { | |
3457 | TObjArray *list = parLibs.Tokenize(":"); | |
3458 | TIter next(list); | |
3459 | TObjString *package; | |
3460 | while((package=(TObjString*)next())) { | |
40501bb7 | 3461 | TString spkg = package->GetName(); |
3462 | spkg.ReplaceAll(".par", ""); | |
3463 | gSystem->Exec(TString::Format("rm -rf %s", spkg.Data())); | |
b50a41c3 | 3464 | if (!gROOT->ProcessLine(Form("gProof->UploadPackage(\"%s\");", package->GetName()))) { |
4f136f18 | 3465 | TString enablePackage = (testMode)?Form("gProof->EnablePackage(\"%s\",kFALSE);", package->GetName()):Form("gProof->EnablePackage(\"%s\",kTRUE);", package->GetName()); |
3466 | if (gROOT->ProcessLine(enablePackage)) { | |
1ac846e9 | 3467 | Error("StartAnalysis", "There was an error trying to enable package %s", package->GetName()); |
3468 | return kFALSE; | |
3469 | } | |
3470 | } else { | |
3471 | Error("StartAnalysis", "There was an error trying to upload package %s", package->GetName()); | |
3472 | return kFALSE; | |
3473 | } | |
3474 | } | |
3475 | if (list) delete list; | |
3476 | } | |
3bdcb562 | 3477 | } else { |
3478 | if (fAdditionalLibs.Contains(".so") && !testMode) { | |
3479 | Error("StartAnalysis", "You request additional libs to be loaded but did not enabled any AliRoot mode. Please refer to: \ | |
3480 | \n http://aaf.cern.ch/node/83 and use a parameter for SetAliRootMode()"); | |
3481 | return kFALSE; | |
3482 | } | |
3483 | } | |
3484 | // Enable par files if requested | |
3485 | if (fPackages && fPackages->GetEntries()) { | |
3486 | TIter next(fPackages); | |
3487 | TObject *package; | |
3488 | while ((package=next())) { | |
1ac846e9 | 3489 | // Skip packages already enabled |
3490 | if (parLibs.Contains(package->GetName())) continue; | |
40501bb7 | 3491 | TString spkg = package->GetName(); |
3492 | spkg.ReplaceAll(".par", ""); | |
3493 | gSystem->Exec(TString::Format("rm -rf %s", spkg.Data())); | |
dc030a24 | 3494 | if (!gROOT->ProcessLine(Form("gProof->UploadPackage(\"%s\");", package->GetName()))) { |
27734f0e | 3495 | if (gROOT->ProcessLine(Form("gProof->EnablePackage(\"%s\",kTRUE);", package->GetName()))) { |
3bdcb562 | 3496 | Error("StartAnalysis", "There was an error trying to enable package %s", package->GetName()); |
3497 | return kFALSE; | |
3498 | } | |
3499 | } else { | |
3500 | Error("StartAnalysis", "There was an error trying to upload package %s", package->GetName()); | |
3501 | return kFALSE; | |
3502 | } | |
3503 | } | |
3504 | } | |
3505 | // Do we need to load analysis source files ? | |
3506 | // NOTE: don't load on client since this is anyway done by the user to attach his task. | |
3507 | if (fAnalysisSource.Length()) { | |
3508 | TObjArray *list = fAnalysisSource.Tokenize(" "); | |
3509 | TIter next(list); | |
3510 | TObjString *str; | |
3511 | while((str=(TObjString*)next())) { | |
3512 | gROOT->ProcessLine(Form("gProof->Load(\"%s+g\", kTRUE);", str->GetName())); | |
dc030a24 | 3513 | } |
3bdcb562 | 3514 | if (list) delete list; |
3515 | } | |
830acc4c | 3516 | if (testMode) { |
3517 | // Register dataset to proof lite. | |
3518 | if (fFileForTestMode.IsNull()) { | |
3519 | Error("GetChainForTestMode", "For proof test mode please use SetFileForTestMode() pointing to a file that contains data file locations."); | |
3520 | return kFALSE; | |
3521 | } | |
3522 | if (gSystem->AccessPathName(fFileForTestMode)) { | |
3523 | Error("GetChainForTestMode", "File not found: %s", fFileForTestMode.Data()); | |
3524 | return kFALSE; | |
3525 | } | |
3526 | TFileCollection *coll = new TFileCollection(); | |
3527 | coll->AddFromFile(fFileForTestMode); | |
8ddad121 | 3528 | gROOT->ProcessLine(Form("gProof->RegisterDataSet(\"test_collection\", (TFileCollection*)%p, \"OV\");", coll)); |
27734f0e | 3529 | gROOT->ProcessLine("gProof->ShowDataSets()"); |
830acc4c | 3530 | } |
3bdcb562 | 3531 | return kTRUE; |
3532 | } | |
c57f56b7 | 3533 | |
43da816a | 3534 | // Check if output files have to be taken from the analysis manager |
3535 | if (TestBit(AliAnalysisGrid::kDefaultOutputs)) { | |
f790bc1b | 3536 | // Add output files and AOD files |
3537 | fOutputFiles = GetListOfFiles("outaod"); | |
c07b9ce2 | 3538 | // Add extra files registered to the analysis manager |
f790bc1b | 3539 | TString extra = GetListOfFiles("ext"); |
3540 | if (!extra.IsNull()) { | |
149d288c | 3541 | extra.ReplaceAll(".root", "*.root"); |
f790bc1b | 3542 | if (!fOutputFiles.IsNull()) fOutputFiles += ","; |
149d288c | 3543 | fOutputFiles += extra; |
84fcd93f | 3544 | } |
149d288c | 3545 | // Compose the output archive. |
b83f84f0 | 3546 | fOutputArchive = "log_archive.zip:std*@disk=1 "; |
ec5acdce | 3547 | if (mgr->IsCollectThroughput()) |
95e16f01 | 3548 | fOutputArchive += Form("root_archive.zip:%s,*.stat@disk=%d %s@disk=%d",fOutputFiles.Data(),fNreplicas, mgr->GetFileInfoLog(),fNreplicas); |
ec5acdce | 3549 | else |
3550 | fOutputArchive += Form("root_archive.zip:%s,*.stat@disk=%d",fOutputFiles.Data(),fNreplicas); | |
43da816a | 3551 | } |
f7b1cbc2 | 3552 | // if (!fCloseSE.Length()) fCloseSE = gSystem->Getenv("alien_CLOSE_SE"); |
c57f56b7 | 3553 | if (TestBit(AliAnalysisGrid::kOffline)) { |
3554 | Info("StartAnalysis","\n##### OFFLINE MODE ##### Files to be used in GRID are produced but not copied \ | |
3555 | \n there nor any job run. You can revise the JDL and analysis \ | |
3556 | \n macro then run the same in \"submit\" mode."); | |
3557 | } else if (TestBit(AliAnalysisGrid::kTest)) { | |
3558 | Info("StartAnalysis","\n##### LOCAL MODE ##### Your analysis will be run locally on a subset of the requested \ | |
3559 | \n dataset."); | |
3560 | } else if (TestBit(AliAnalysisGrid::kSubmit)) { | |
3561 | Info("StartAnalysis","\n##### SUBMIT MODE ##### Files required by your analysis are copied to your grid working \ | |
3562 | \n space and job submitted."); | |
3563 | } else if (TestBit(AliAnalysisGrid::kMerge)) { | |
3564 | Info("StartAnalysis","\n##### MERGE MODE ##### The registered outputs of the analysis will be merged"); | |
0f389141 | 3565 | if (fMergeViaJDL) CheckInputData(); |
5513444a | 3566 | return kTRUE; |
c57f56b7 | 3567 | } else { |
3568 | Info("StartAnalysis","\n##### FULL ANALYSIS MODE ##### Producing needed files and submitting your analysis job..."); | |
3569 | } | |
3570 | ||
348be253 | 3571 | Print(); |
c57f56b7 | 3572 | if (!Connect()) { |
3573 | Error("StartAnalysis", "Cannot start grid analysis without grid connection"); | |
5513444a | 3574 | return kFALSE; |
16a4353c | 3575 | } |
d3b18c4c | 3576 | if (IsCheckCopy() && gGrid) CheckFileCopy(gGrid->GetHomeDirectory()); |
c57f56b7 | 3577 | if (!CheckInputData()) { |
3578 | Error("StartAnalysis", "There was an error in preprocessing your requested input data"); | |
5513444a | 3579 | return kFALSE; |
c57f56b7 | 3580 | } |
d3339be3 | 3581 | if (!CreateDataset(fDataPattern)) { |
3582 | TString serror; | |
3583 | if (!fRunNumbers.Length() && !fRunRange[0]) serror = Form("path to data directory: <%s>", fGridDataDir.Data()); | |
3584 | if (fRunNumbers.Length()) serror = "run numbers"; | |
3585 | if (fRunRange[0]) serror = Form("run range [%d, %d]", fRunRange[0], fRunRange[1]); | |
3586 | serror += Form("\n or data pattern <%s>", fDataPattern.Data()); | |
3587 | Error("StartAnalysis", "No data to process. Please fix %s in your plugin configuration.", serror.Data()); | |
3588 | return kFALSE; | |
3589 | } | |
21ca8e59 | 3590 | WriteAnalysisFile(); |
c57f56b7 | 3591 | WriteAnalysisMacro(); |
3592 | WriteExecutable(); | |
3593 | WriteValidationScript(); | |
0f389141 | 3594 | if (fMergeViaJDL) { |
3595 | WriteMergingMacro(); | |
3596 | WriteMergeExecutable(); | |
3597 | WriteValidationScript(kTRUE); | |
3598 | } | |
5513444a | 3599 | if (!CreateJDL()) return kFALSE; |
3600 | if (TestBit(AliAnalysisGrid::kOffline)) return kFALSE; | |
3bdcb562 | 3601 | if (testMode) { |
c57f56b7 | 3602 | // Locally testing the analysis |
3603 | Info("StartAnalysis", "\n_______________________________________________________________________ \ | |
3604 | \n Running analysis script in a daughter shell as on a worker node \ | |
3605 | \n_______________________________________________________________________"); | |
149d288c | 3606 | TObjArray *list = fOutputFiles.Tokenize(","); |
c57f56b7 | 3607 | TIter next(list); |
3608 | TObjString *str; | |
a2f5fc01 | 3609 | TString outputFile; |
c57f56b7 | 3610 | while((str=(TObjString*)next())) { |
a2f5fc01 | 3611 | outputFile = str->GetString(); |
3612 | Int_t index = outputFile.Index("@"); | |
3613 | if (index > 0) outputFile.Remove(index); | |
3614 | if (!gSystem->AccessPathName(outputFile)) gSystem->Exec(Form("rm %s", outputFile.Data())); | |
c57f56b7 | 3615 | } |
3616 | delete list; | |
3617 | gSystem->Exec(Form("bash %s 2>stderr", fExecutable.Data())); | |
f50e4bc8 | 3618 | gSystem->Exec(Form("bash %s",fValidationScript.Data())); |
c57f56b7 | 3619 | // gSystem->Exec("cat stdout"); |
5513444a | 3620 | return kFALSE; |
c57f56b7 | 3621 | } |
5513444a | 3622 | // Check if submitting is managed by LPM manager |
a3e84053 | 3623 | if (fProductionMode) { |
7ac61826 | 3624 | //TString prodfile = fJDLName; |
3625 | //prodfile.ReplaceAll(".jdl", ".prod"); | |
3626 | //WriteProductionFile(prodfile); | |
5513444a | 3627 | Info("StartAnalysis", "Job submitting is managed by LPM. Rerun in terminate mode after jobs finished."); |
3628 | return kFALSE; | |
3629 | } | |
a8739e8a | 3630 | // Submit AliEn job(s) |
d2a409b2 | 3631 | gGrid->Cd(fGridOutputDir); |
a8739e8a | 3632 | TGridResult *res; |
c57f56b7 | 3633 | TString jobID = ""; |
0ad3ea1f | 3634 | fGridJobIDs = ""; |
3635 | fGridStages = ""; | |
d2a409b2 | 3636 | if (!fRunNumbers.Length() && !fRunRange[0]) { |
dd74a515 | 3637 | // Submit a given xml or a set of runs |
a8739e8a | 3638 | res = gGrid->Command(Form("submit %s", fJDLName.Data())); |
84fcd93f | 3639 | printf("*************************** %s\n",Form("submit %s", fJDLName.Data())); |
a8739e8a | 3640 | if (res) { |
3641 | const char *cjobId = res->GetKey(0,"jobId"); | |
3642 | if (!cjobId) { | |
a03be957 | 3643 | gGrid->Stdout(); |
3644 | gGrid->Stderr(); | |
a8739e8a | 3645 | Error("StartAnalysis", "Your JDL %s could not be submitted", fJDLName.Data()); |
5513444a | 3646 | return kFALSE; |
a8739e8a | 3647 | } else { |
3648 | Info("StartAnalysis", "\n_______________________________________________________________________ \ | |
3649 | \n##### Your JDL %s was successfully submitted. \nTHE JOB ID IS: %s \ | |
3650 | \n_______________________________________________________________________", | |
3651 | fJDLName.Data(), cjobId); | |
3652 | jobID = cjobId; | |
0ad3ea1f | 3653 | if (jobID.Atoi()) { |
3654 | if (!fGridJobIDs.IsNull()) fGridJobIDs.Append(" "); | |
3655 | fGridJobIDs.Append(jobID); | |
3656 | if (!fGridStages.IsNull()) fGridStages.Append(" "); | |
3657 | fGridStages.Append("full"); | |
3658 | } | |
a8739e8a | 3659 | } |
3660 | delete res; | |
a03be957 | 3661 | } else { |
3662 | Error("StartAnalysis", "No grid result after submission !!! Bailing out..."); | |
3663 | return kFALSE; | |
a8739e8a | 3664 | } |
3665 | } else { | |
d2a409b2 | 3666 | // Submit for a range of enumeration of runs. |
a03be957 | 3667 | if (!Submit()) return kFALSE; |
0ad3ea1f | 3668 | jobID = fGridJobIDs; |
c57f56b7 | 3669 | } |
a8739e8a | 3670 | |
d88e4159 | 3671 | if (fDropToShell) { |
3672 | Info("StartAnalysis", "\n#### STARTING AN ALIEN SHELL FOR YOU. EXIT WHEN YOUR JOB %s HAS FINISHED. #### \ | |
3673 | \n You may exit at any time and terminate the job later using the option <terminate> \ | |
3674 | \n ##################################################################################", jobID.Data()); | |
3675 | gSystem->Exec("aliensh"); | |
3676 | } else { | |
3677 | Info("StartAnalysis", "\n#### SUBMITTED JOB %s TO ALIEN QUEUE #### \ | |
3678 | \n Remember to terminate the job later using the option <terminate> \ | |
3679 | \n ##################################################################################", jobID.Data()); | |
3680 | } | |
5513444a | 3681 | return kTRUE; |
c57f56b7 | 3682 | } |
3683 | ||
f790bc1b | 3684 | //______________________________________________________________________________ |
3685 | const char *AliAnalysisAlien::GetListOfFiles(const char *type) | |
3686 | { | |
3687 | // Get a comma-separated list of output files of the requested type. | |
3688 | // Type can be (case unsensitive): | |
3689 | // aod - list of aod files (std, extensions and filters) | |
3690 | // out - list of output files connected to containers (but not aod's or extras) | |
3691 | // ext - list of extra files registered to the manager | |
3692 | // ter - list of files produced in terminate | |
3693 | static TString files; | |
3694 | files = ""; | |
3695 | TString stype = type; | |
3696 | stype.ToLower(); | |
3697 | TString aodfiles, extra; | |
3698 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); | |
3699 | if (!mgr) { | |
3700 | ::Error("GetListOfFiles", "Cannot call this without analysis manager"); | |
3701 | return files.Data(); | |
3702 | } | |
3703 | if (mgr->GetOutputEventHandler()) { | |
6be131bd | 3704 | aodfiles = ""; |
3705 | if (mgr->GetOutputEventHandler()->GetFillAOD()) | |
3706 | aodfiles = mgr->GetOutputEventHandler()->GetOutputFileName(); | |
f6eaa73b | 3707 | TString extraaod = mgr->GetOutputEventHandler()->GetExtraOutputs(kTRUE); |
6be131bd | 3708 | if (!extraaod.IsNull() && mgr->GetOutputEventHandler()->GetFillExtension()) { |
0c0825e4 | 3709 | if (!aodfiles.IsNull()) aodfiles += ","; |
f790bc1b | 3710 | aodfiles += extraaod; |
3711 | } | |
3712 | } | |
3713 | if (stype.Contains("aod")) { | |
3714 | files = aodfiles; | |
3715 | if (stype == "aod") return files.Data(); | |
3716 | } | |
3717 | // Add output files that are not in the list of AOD files | |
3718 | TString outputfiles = ""; | |
3719 | TIter next(mgr->GetOutputs()); | |
3720 | AliAnalysisDataContainer *output; | |
3721 | const char *filename = 0; | |
3722 | while ((output=(AliAnalysisDataContainer*)next())) { | |
3723 | filename = output->GetFileName(); | |
3724 | if (!(strcmp(filename, "default"))) continue; | |
3725 | if (outputfiles.Contains(filename)) continue; | |
3726 | if (aodfiles.Contains(filename)) continue; | |
0c0825e4 | 3727 | if (!outputfiles.IsNull() && strlen(filename)) outputfiles += ","; |
f790bc1b | 3728 | outputfiles += filename; |
3729 | } | |
3730 | if (stype.Contains("out")) { | |
0c0825e4 | 3731 | if (!files.IsNull() && !outputfiles.IsNull()) files += ","; |
f790bc1b | 3732 | files += outputfiles; |
3733 | if (stype == "out") return files.Data(); | |
3734 | } | |
3735 | // Add extra files registered to the analysis manager | |
3736 | TString sextra; | |
3737 | extra = mgr->GetExtraFiles(); | |
3738 | if (!extra.IsNull()) { | |
3739 | extra.Strip(); | |
3740 | extra.ReplaceAll(" ", ","); | |
3741 | TObjArray *fextra = extra.Tokenize(","); | |
3742 | TIter nextx(fextra); | |
3743 | TObject *obj; | |
3744 | while ((obj=nextx())) { | |
3745 | if (aodfiles.Contains(obj->GetName())) continue; | |
3746 | if (outputfiles.Contains(obj->GetName())) continue; | |
3747 | if (sextra.Contains(obj->GetName())) continue; | |
3748 | if (!sextra.IsNull()) sextra += ","; | |
3749 | sextra += obj->GetName(); | |
3750 | } | |
3751 | delete fextra; | |
3752 | if (stype.Contains("ext")) { | |
0c0825e4 | 3753 | if (!files.IsNull() && !sextra.IsNull()) files += ","; |
f790bc1b | 3754 | files += sextra; |
3755 | } | |
3756 | } | |
3757 | if (stype == "ext") return files.Data(); | |
3758 | TString termfiles; | |
3759 | if (!fTerminateFiles.IsNull()) { | |
3760 | fTerminateFiles.Strip(); | |
3761 | fTerminateFiles.ReplaceAll(" ",","); | |
9c939f2b | 3762 | TObjArray *fextra = fTerminateFiles.Tokenize(","); |
f790bc1b | 3763 | TIter nextx(fextra); |
3764 | TObject *obj; | |
3765 | while ((obj=nextx())) { | |
3766 | if (aodfiles.Contains(obj->GetName())) continue; | |
3767 | if (outputfiles.Contains(obj->GetName())) continue; | |
3768 | if (termfiles.Contains(obj->GetName())) continue; | |
3769 | if (sextra.Contains(obj->GetName())) continue; | |
3770 | if (!termfiles.IsNull()) termfiles += ","; | |
3771 | termfiles += obj->GetName(); | |
3772 | } | |
3773 | delete fextra; | |
3774 | } | |
3775 | if (stype.Contains("ter")) { | |
3776 | if (!files.IsNull() && !termfiles.IsNull()) { | |
3777 | files += ","; | |
3778 | files += termfiles; | |
3779 | } | |
3780 | } | |
3781 | return files.Data(); | |
3782 | } | |
3783 | ||
d2a409b2 | 3784 | //______________________________________________________________________________ |
a03be957 | 3785 | Bool_t AliAnalysisAlien::Submit() |
d2a409b2 | 3786 | { |
3787 | // Submit all master jobs. | |
3788 | Int_t nmasterjobs = fInputFiles->GetEntries(); | |
3789 | Long_t tshoot = gSystem->Now(); | |
a03be957 | 3790 | if (!fNsubmitted && !SubmitNext()) return kFALSE; |
d2a409b2 | 3791 | while (fNsubmitted < nmasterjobs) { |
3792 | Long_t now = gSystem->Now(); | |
3793 | if ((now-tshoot)>30000) { | |
3794 | tshoot = now; | |
a03be957 | 3795 | if (!SubmitNext()) return kFALSE; |
d2a409b2 | 3796 | } |
3797 | } | |
a03be957 | 3798 | return kTRUE; |
d2a409b2 | 3799 | } |
3800 | ||
0f389141 | 3801 | //______________________________________________________________________________ |
a03be957 | 3802 | Bool_t AliAnalysisAlien::SubmitMerging() |
0f389141 | 3803 | { |
3804 | // Submit all merging jobs. | |
dc030a24 | 3805 | if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("%s/%s/%s", gGrid->GetHomeDirectory(), fGridWorkingDir.Data(), fGridOutputDir.Data()); |
0f389141 | 3806 | gGrid->Cd(fGridOutputDir); |
3807 | TString mergeJDLName = fExecutable; | |
3808 | mergeJDLName.ReplaceAll(".sh", "_merge.jdl"); | |
9f020952 | 3809 | if (!fInputFiles) { |
3810 | Error("SubmitMerging", "You have to use explicit run numbers or run range to merge via JDL!"); | |
3811 | return kFALSE; | |
3812 | } | |
0f389141 | 3813 | Int_t ntosubmit = fInputFiles->GetEntries(); |
0f389141 | 3814 | for (Int_t i=0; i<ntosubmit; i++) { |
f866cba5 | 3815 | TString runOutDir = gSystem->BaseName(fInputFiles->At(i)->GetName()); |
3816 | runOutDir.ReplaceAll(".xml", ""); | |
7c2cd90a | 3817 | if (fOutputToRunNo) { |
3818 | // The output directory is the run number | |
3819 | printf("### Submitting merging job for run <%s>\n", runOutDir.Data()); | |
3820 | runOutDir = Form("%s/%s", fGridOutputDir.Data(), runOutDir.Data()); | |
3821 | } else { | |
17b4e9a4 | 3822 | if (!fRunNumbers.Length() && !fRunRange[0]) { |
3823 | // The output directory is the grid outdir | |
3824 | printf("### Submitting merging job for the full output directory %s.\n", fGridOutputDir.Data()); | |
3825 | runOutDir = fGridOutputDir; | |
3826 | } else { | |
3827 | // The output directory is the master number in 3 digits format | |
3828 | printf("### Submitting merging job for master <%03d>\n", i); | |
3829 | runOutDir = Form("%s/%03d",fGridOutputDir.Data(), i); | |
3830 | } | |
7c2cd90a | 3831 | } |
3832 | // Check now the number of merging stages. | |
2b222f7c | 3833 | TObjArray *list = fOutputFiles.Tokenize(","); |
3834 | TIter next(list); | |
3835 | TObjString *str; | |
3836 | TString outputFile; | |
3837 | while((str=(TObjString*)next())) { | |
3838 | outputFile = str->GetString(); | |
3839 | Int_t index = outputFile.Index("@"); | |
3840 | if (index > 0) outputFile.Remove(index); | |
37d21c01 | 3841 | if (!fMergeExcludes.Contains(outputFile) && |
3842 | !fRegisterExcludes.Contains(outputFile)) break; | |
2b222f7c | 3843 | } |
3844 | delete list; | |
b3e07543 | 3845 | Bool_t done = CheckMergedFiles(outputFile, runOutDir, fMaxMergeFiles, mergeJDLName); |
1d0b4d65 | 3846 | if (!done && (i==ntosubmit-1)) return kFALSE; |
17b4e9a4 | 3847 | if (!fRunNumbers.Length() && !fRunRange[0]) break; |
0f389141 | 3848 | } |
a03be957 | 3849 | if (!ntosubmit) return kTRUE; |
d88e4159 | 3850 | if (fDropToShell) { |
3851 | Info("StartAnalysis", "\n #### STARTING AN ALIEN SHELL FOR YOU. You can exit any time or inspect your jobs in a different shell.##########\ | |
3852 | \n Make sure your jobs are in a final state (you can resubmit failed ones via 'masterjob <id> resubmit ERROR_ALL')\ | |
3853 | \n Rerun in 'terminate' mode to submit all merging stages, each AFTER the previous one completed. The final merged \ | |
3854 | \n output will be written to your alien output directory, while separate stages in <Stage_n>. \ | |
3855 | \n ################################################################################################################"); | |
3856 | gSystem->Exec("aliensh"); | |
3857 | } else { | |
3858 | Info("StartAnalysis", "\n #### STARTED MERGING JOBS FOR YOU #### \ | |
3859 | \n Make sure your jobs are in a final state (you can resubmit failed ones via 'masterjob <id> resubmit ERROR_ALL') \ | |
3860 | \n Rerun in 'terminate' mode to submit all merging stages, each AFTER the previous one completed. The final merged \ | |
3861 | \n output will be written to your alien output directory, while separate stages in <Stage_n>. \ | |
3862 | \n ################################################################################################################"); | |
3863 | } | |
a03be957 | 3864 | return kTRUE; |
0f389141 | 3865 | } |
3866 | ||
d2a409b2 | 3867 | //______________________________________________________________________________ |
a03be957 | 3868 | Bool_t AliAnalysisAlien::SubmitNext() |
d2a409b2 | 3869 | { |
08d5b699 | 3870 | // Submit next bunch of master jobs if the queue is free. The first master job is |
3871 | // submitted right away, while the next will not be unless the previous was split. | |
3872 | // The plugin will not submit new master jobs if there are more that 500 jobs in | |
3873 | // waiting phase. | |
d2a409b2 | 3874 | static Bool_t iscalled = kFALSE; |
3875 | static Int_t firstmaster = 0; | |
3876 | static Int_t lastmaster = 0; | |
3877 | static Int_t npermaster = 0; | |
a03be957 | 3878 | if (iscalled) return kTRUE; |
d2a409b2 | 3879 | iscalled = kTRUE; |
3880 | Int_t nrunning=0, nwaiting=0, nerror=0, ndone=0; | |
3881 | Int_t ntosubmit = 0; | |
3882 | TGridResult *res; | |
3883 | TString jobID = ""; | |
3bdcb562 | 3884 | Int_t nmasterjobs = fInputFiles->GetEntries(); |
3885 | if (!fNsubmitted) { | |
3886 | ntosubmit = 1; | |
3887 | if (!IsUseSubmitPolicy()) { | |
90d50a8c | 3888 | if (nmasterjobs>5) |
3bdcb562 | 3889 | Info("SubmitNext","### Warning submit policy not used ! Submitting too many jobs at a time may be prohibitted. \ |
3890 | \n### You can use SetUseSubmitPolicy() to enable if you have problems."); | |
3891 | ntosubmit = nmasterjobs; | |
3892 | } | |
3893 | } else { | |
d2a409b2 | 3894 | TString status = GetJobStatus(firstmaster, lastmaster, nrunning, nwaiting, nerror, ndone); |
84fcd93f | 3895 | printf("=== master %d: %s\n", lastmaster, status.Data()); |
d2a409b2 | 3896 | // If last master not split, just return |
a03be957 | 3897 | if (status != "SPLIT") {iscalled = kFALSE; return kTRUE;} |
d2a409b2 | 3898 | // No more than 100 waiting jobs |
08d5b699 | 3899 | if (nwaiting>500) {iscalled = kFALSE; return kTRUE;} |
d2a409b2 | 3900 | npermaster = (nrunning+nwaiting+nerror+ndone)/fNsubmitted; |
08d5b699 | 3901 | if (npermaster) ntosubmit = (500-nwaiting)/npermaster; |
7586eedc | 3902 | if (!ntosubmit) ntosubmit = 1; |
84fcd93f | 3903 | printf("=== WAITING(%d) RUNNING(%d) DONE(%d) OTHER(%d) NperMaster=%d => to submit %d jobs\n", |
d2a409b2 | 3904 | nwaiting, nrunning, ndone, nerror, npermaster, ntosubmit); |
3905 | } | |
d2a409b2 | 3906 | for (Int_t i=0; i<ntosubmit; i++) { |
3907 | // Submit for a range of enumeration of runs. | |
a03be957 | 3908 | if (fNsubmitted>=nmasterjobs) {iscalled = kFALSE; return kTRUE;} |
d2a409b2 | 3909 | TString query; |
cd11251e | 3910 | TString runOutDir = gSystem->BaseName(fInputFiles->At(fNsubmitted)->GetName()); |
3911 | runOutDir.ReplaceAll(".xml", ""); | |
3912 | if (fOutputToRunNo) | |
3913 | query = Form("submit %s %s %s", fJDLName.Data(), fInputFiles->At(fNsubmitted)->GetName(), runOutDir.Data()); | |
3914 | else | |
3915 | query = Form("submit %s %s %03d", fJDLName.Data(), fInputFiles->At(fNsubmitted)->GetName(), fNsubmitted); | |
84fcd93f | 3916 | printf("********* %s\n",query.Data()); |
d2a409b2 | 3917 | res = gGrid->Command(query); |
3918 | if (res) { | |
98ca124f | 3919 | TString cjobId1 = res->GetKey(0,"jobId"); |
3920 | if (!cjobId1.Length()) { | |
d2a409b2 | 3921 | iscalled = kFALSE; |
a03be957 | 3922 | gGrid->Stdout(); |
3923 | gGrid->Stderr(); | |
3924 | Error("StartAnalysis", "Your JDL %s could not be submitted. The message was:", fJDLName.Data()); | |
3925 | return kFALSE; | |
d2a409b2 | 3926 | } else { |
3927 | Info("StartAnalysis", "\n_______________________________________________________________________ \ | |
3928 | \n##### Your JDL %s submitted (%d to go). \nTHE JOB ID IS: %s \ | |
3929 | \n_______________________________________________________________________", | |
98ca124f | 3930 | fJDLName.Data(), nmasterjobs-fNsubmitted-1, cjobId1.Data()); |
0ad3ea1f | 3931 | if (!fGridJobIDs.IsNull()) fGridJobIDs.Append(" "); |
3932 | fGridJobIDs.Append(cjobId1); | |
3933 | if (!fGridStages.IsNull()) fGridStages.Append(" "); | |
3934 | fGridStages.Append("full"); | |
d2a409b2 | 3935 | jobID += cjobId1; |
3936 | jobID += " "; | |
98ca124f | 3937 | lastmaster = cjobId1.Atoi(); |
d2a409b2 | 3938 | if (!firstmaster) firstmaster = lastmaster; |
3939 | fNsubmitted++; | |
3940 | } | |
3941 | delete res; | |
a03be957 | 3942 | } else { |
3943 | Error("StartAnalysis", "No grid result after submission !!! Bailing out..."); | |
3944 | return kFALSE; | |
d2a409b2 | 3945 | } |
3946 | } | |
3947 | iscalled = kFALSE; | |
a03be957 | 3948 | return kTRUE; |
d2a409b2 | 3949 | } |
3950 | ||
c57f56b7 | 3951 | //______________________________________________________________________________ |
3952 | void AliAnalysisAlien::WriteAnalysisFile() | |
3953 | { | |
f10e8481 | 3954 | // Write current analysis manager into the file <analysisFile> |
3955 | TString analysisFile = fExecutable; | |
3956 | analysisFile.ReplaceAll(".sh", ".root"); | |
c57f56b7 | 3957 | if (!TestBit(AliAnalysisGrid::kSubmit)) { |
3958 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); | |
3959 | if (!mgr || !mgr->IsInitialized()) { | |
3960 | Error("WriteAnalysisFile", "You need an initialized analysis manager for this"); | |
3961 | return; | |
3962 | } | |
3963 | // Check analysis type | |
3964 | TObject *handler; | |
3965 | if (mgr->GetMCtruthEventHandler()) TObject::SetBit(AliAnalysisGrid::kUseMC); | |
3966 | handler = (TObject*)mgr->GetInputEventHandler(); | |
3967 | if (handler) { | |
65eb22f8 | 3968 | if (handler->InheritsFrom("AliMultiInputEventHandler")) { |
3969 | AliMultiInputEventHandler *multiIH = (AliMultiInputEventHandler*)handler; | |
3970 | if (multiIH->GetFirstInputEventHandler()->InheritsFrom("AliESDInputHandler")) TObject::SetBit(AliAnalysisGrid::kUseESD); | |
3971 | if (multiIH->GetFirstInputEventHandler()->InheritsFrom("AliAODInputHandler")) TObject::SetBit(AliAnalysisGrid::kUseAOD); | |
3972 | } else { | |
3973 | if (handler->InheritsFrom("AliESDInputHandler")) TObject::SetBit(AliAnalysisGrid::kUseESD); | |
3974 | if (handler->InheritsFrom("AliAODInputHandler")) TObject::SetBit(AliAnalysisGrid::kUseAOD); | |
3975 | } | |
c57f56b7 | 3976 | } |
3977 | TDirectory *cdir = gDirectory; | |
f10e8481 | 3978 | TFile *file = TFile::Open(analysisFile, "RECREATE"); |
c57f56b7 | 3979 | if (file) { |
e16a394c | 3980 | // Skip task Terminate calls for the grid job (but not in test mode, where we want to check also the terminate mode |
3981 | if (!TestBit(AliAnalysisGrid::kTest)) mgr->SetSkipTerminate(kTRUE); | |
fe2d7fc2 | 3982 | // Unless merging makes no sense |
3983 | if (IsSingleOutput()) mgr->SetSkipTerminate(kFALSE); | |
c57f56b7 | 3984 | mgr->Write(); |
3985 | delete file; | |
fe2d7fc2 | 3986 | // Enable termination for local jobs |
3987 | mgr->SetSkipTerminate(kFALSE); | |
c57f56b7 | 3988 | } |
3989 | if (cdir) cdir->cd(); | |
f10e8481 | 3990 | Info("WriteAnalysisFile", "\n##### Analysis manager: %s wrote to file <%s>\n", mgr->GetName(),analysisFile.Data()); |
c57f56b7 | 3991 | } |
3992 | Bool_t copy = kTRUE; | |
d3b18c4c | 3993 | if (fProductionMode || TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; |
c57f56b7 | 3994 | if (copy) { |
3995 | CdWork(); | |
3996 | TString workdir = gGrid->GetHomeDirectory(); | |
3997 | workdir += fGridWorkingDir; | |
d3b18c4c | 3998 | Info("WriteAnalysisFile", "\n##### Copying file <%s> containing your initialized analysis manager to your alien workspace", analysisFile.Data()); |
f10e8481 | 3999 | if (FileExists(analysisFile)) gGrid->Rm(analysisFile); |
6c395669 | 4000 | if (!copyLocal2Alien("WriteAnalysisFile",analysisFile.Data(), |
4001 | Form("%s/%s", workdir.Data(),analysisFile.Data()))) Fatal("","Terminating"); | |
c57f56b7 | 4002 | } |
4003 | } | |
4004 | ||
4005 | //______________________________________________________________________________ | |
4006 | void AliAnalysisAlien::WriteAnalysisMacro() | |
4007 | { | |
4008 | // Write the analysis macro that will steer the analysis in grid mode. | |
4009 | if (!TestBit(AliAnalysisGrid::kSubmit)) { | |
4010 | ofstream out; | |
4011 | out.open(fAnalysisMacro.Data(), ios::out); | |
4012 | if (!out.good()) { | |
4013 | Error("WriteAnalysisMacro", "could not open file %s for writing", fAnalysisMacro.Data()); | |
4014 | return; | |
4015 | } | |
5b273635 | 4016 | Bool_t hasSTEERBase = kFALSE; |
4017 | Bool_t hasESD = kFALSE; | |
4018 | Bool_t hasAOD = kFALSE; | |
4019 | Bool_t hasANALYSIS = kFALSE; | |
7ea40ac8 | 4020 | Bool_t hasOADB = kFALSE; |
5b273635 | 4021 | Bool_t hasANALYSISalice = kFALSE; |
4022 | Bool_t hasCORRFW = kFALSE; | |
c57f56b7 | 4023 | TString func = fAnalysisMacro; |
4024 | TString type = "ESD"; | |
4025 | TString comment = "// Analysis using "; | |
715da79c | 4026 | if (fMCLoop) { |
4027 | type = "MCGEN"; | |
4028 | comment += "MCGEN"; | |
4029 | } else { | |
4030 | if (IsUseMCchain()) { | |
4031 | type = "MC"; | |
4032 | comment += "MC"; | |
4033 | } else { | |
4034 | if (TObject::TestBit(AliAnalysisGrid::kUseESD)) comment += "ESD"; | |
4035 | if (TObject::TestBit(AliAnalysisGrid::kUseAOD)) { | |
4036 | type = "AOD"; | |
4037 | comment += "AOD"; | |
4038 | } | |
4039 | } | |
4040 | } | |
0df6ccf2 | 4041 | if (type!="AOD" && fFriendChainName!="") { |
4042 | Error("WriteAnalysisMacro", "Friend chain can be attached only to AOD"); | |
4043 | return; | |
4044 | } | |
c57f56b7 | 4045 | if (TObject::TestBit(AliAnalysisGrid::kUseMC)) comment += "/MC"; |
4046 | else comment += " data"; | |
4047 | out << "const char *anatype = \"" << type.Data() << "\";" << endl << endl; | |
4048 | func.ReplaceAll(".C", ""); | |
4049 | out << "void " << func.Data() << "()" << endl; | |
4050 | out << "{" << endl; | |
4051 | out << comment.Data() << endl; | |
4052 | out << "// Automatically generated analysis steering macro executed in grid subjobs" << endl << endl; | |
f7498086 | 4053 | out << " TStopwatch timer;" << endl; |
4054 | out << " timer.Start();" << endl << endl; | |
13f0c00b | 4055 | // Change temp directory to current one |
fdee57f1 | 4056 | if (!IsLocalTest()) { |
4057 | out << "// connect to AliEn and make the chain" << endl; | |
4058 | out << " if (!TGrid::Connect(\"alien://\")) return;" << endl; | |
4059 | } | |
13f0c00b | 4060 | out << "// Set temporary merging directory to current one" << endl; |
4061 | out << " gSystem->Setenv(\"TMPDIR\", gSystem->pwd());" << endl << endl; | |
70c52cf3 | 4062 | out << "// Set temporary compilation directory to current one" << endl; |
4063 | out << " gSystem->SetBuildDir(gSystem->pwd(), kTRUE);" << endl << endl; | |
b3e07543 | 4064 | // Reset existing include path |
4065 | out << "// Reset existing include path and add current directory first in the search" << endl; | |
4066 | out << " gSystem->SetIncludePath(\"-I.\");" << endl; | |
f790bc1b | 4067 | if (!fExecutableCommand.Contains("aliroot")) { |
4068 | out << "// load base root libraries" << endl; | |
4069 | out << " gSystem->Load(\"libTree\");" << endl; | |
4070 | out << " gSystem->Load(\"libGeom\");" << endl; | |
4071 | out << " gSystem->Load(\"libVMC\");" << endl; | |
4072 | out << " gSystem->Load(\"libPhysics\");" << endl << endl; | |
4073 | out << " gSystem->Load(\"libMinuit\");" << endl << endl; | |
4074 | } | |
d5c6455a | 4075 | if (fAdditionalRootLibs.Length()) { |
47a4137d | 4076 | // in principle libtree /lib geom libvmc etc. can go into this list, too |
4077 | out << "// Add aditional libraries" << endl; | |
4078 | TObjArray *list = fAdditionalRootLibs.Tokenize(" "); | |
4079 | TIter next(list); | |
4080 | TObjString *str; | |
4081 | while((str=(TObjString*)next())) { | |
4082 | if (str->GetString().Contains(".so")) | |
4083 | out << " gSystem->Load(\"" << str->GetString().Data() << "\");" << endl; | |
d5c6455a | 4084 | } |
47a4137d | 4085 | if (list) delete list; |
d5c6455a | 4086 | } |
57377eb5 | 4087 | out << "// Load analysis framework libraries" << endl; |
652561d5 | 4088 | TString setupPar = "AliAnalysisAlien::SetupPar"; |
4e5c5506 | 4089 | if (!fPackages) { |
f790bc1b | 4090 | if (!fExecutableCommand.Contains("aliroot")) { |
4091 | out << " gSystem->Load(\"libSTEERBase\");" << endl; | |
4092 | out << " gSystem->Load(\"libESD\");" << endl; | |
4093 | out << " gSystem->Load(\"libAOD\");" << endl; | |
4094 | } | |
4e5c5506 | 4095 | out << " gSystem->Load(\"libANALYSIS\");" << endl; |
7ea40ac8 | 4096 | out << " gSystem->Load(\"libOADB\");" << endl; |
57377eb5 | 4097 | out << " gSystem->Load(\"libANALYSISalice\");" << endl; |
4098 | out << " gSystem->Load(\"libCORRFW\");" << endl << endl; | |
4e5c5506 | 4099 | } else { |
4e5c5506 | 4100 | TIter next(fPackages); |
4101 | TObject *obj; | |
57377eb5 | 4102 | TString pkgname; |
57377eb5 | 4103 | while ((obj=next())) { |
4104 | pkgname = obj->GetName(); | |
4478e6f1 | 4105 | if (pkgname == "STEERBase" || |
4106 | pkgname == "STEERBase.par") hasSTEERBase = kTRUE; | |
4107 | if (pkgname == "ESD" || | |
4108 | pkgname == "ESD.par") hasESD = kTRUE; | |
4109 | if (pkgname == "AOD" || | |
4110 | pkgname == "AOD.par") hasAOD = kTRUE; | |
4111 | if (pkgname == "ANALYSIS" || | |
4112 | pkgname == "ANALYSIS.par") hasANALYSIS = kTRUE; | |
7ea40ac8 | 4113 | if (pkgname == "OADB" || |
4114 | pkgname == "OADB.par") hasOADB = kTRUE; | |
4478e6f1 | 4115 | if (pkgname == "ANALYSISalice" || |
4116 | pkgname == "ANALYSISalice.par") hasANALYSISalice = kTRUE; | |
4117 | if (pkgname == "CORRFW" || | |
4118 | pkgname == "CORRFW.par") hasCORRFW = kTRUE; | |
5b273635 | 4119 | } |
4120 | if (hasANALYSISalice) setupPar = "SetupPar"; | |
57377eb5 | 4121 | if (!hasSTEERBase) out << " gSystem->Load(\"libSTEERBase\");" << endl; |
5b273635 | 4122 | else out << " if (!" << setupPar << "(\"STEERBase\")) return;" << endl; |
57377eb5 | 4123 | if (!hasESD) out << " gSystem->Load(\"libESD\");" << endl; |
5b273635 | 4124 | else out << " if (!" << setupPar << "(\"ESD\")) return;" << endl; |
57377eb5 | 4125 | if (!hasAOD) out << " gSystem->Load(\"libAOD\");" << endl; |
5b273635 | 4126 | else out << " if (!" << setupPar << "(\"AOD\")) return;" << endl; |
57377eb5 | 4127 | if (!hasANALYSIS) out << " gSystem->Load(\"libANALYSIS\");" << endl; |
5b273635 | 4128 | else out << " if (!" << setupPar << "(\"ANALYSIS\")) return;" << endl; |
7ea40ac8 | 4129 | if (!hasOADB) out << " gSystem->Load(\"libOADB\");" << endl; |
4130 | else out << " if (!" << setupPar << "(\"OADB\")) return;" << endl; | |
57377eb5 | 4131 | if (!hasANALYSISalice) out << " gSystem->Load(\"libANALYSISalice\");" << endl; |
5b273635 | 4132 | else out << " if (!" << setupPar << "(\"ANALYSISalice\")) return;" << endl; |
57377eb5 | 4133 | if (!hasCORRFW) out << " gSystem->Load(\"libCORRFW\");" << endl << endl; |
5b273635 | 4134 | else out << " if (!" << setupPar << "(\"CORRFW\")) return;" << endl << endl; |
57377eb5 | 4135 | out << "// Compile other par packages" << endl; |
4136 | next.Reset(); | |
fcc9bb6f | 4137 | while ((obj=next())) { |
4138 | pkgname = obj->GetName(); | |
4478e6f1 | 4139 | if (pkgname == "STEERBase" || |
4140 | pkgname == "STEERBase.par" || | |
4141 | pkgname == "ESD" || | |
4142 | pkgname == "ESD.par" || | |
4143 | pkgname == "AOD" || | |
4144 | pkgname == "AOD.par" || | |
4145 | pkgname == "ANALYSIS" || | |
4146 | pkgname == "ANALYSIS.par" || | |
7ea40ac8 | 4147 | pkgname == "OADB" || |
4148 | pkgname == "OADB.par" || | |
4478e6f1 | 4149 | pkgname == "ANALYSISalice" || |
4150 | pkgname == "ANALYSISalice.par" || | |
4151 | pkgname == "CORRFW" || | |
4152 | pkgname == "CORRFW.par") continue; | |
5b273635 | 4153 | out << " if (!" << setupPar << "(\"" << obj->GetName() << "\")) return;" << endl; |
fcc9bb6f | 4154 | } |
4e5c5506 | 4155 | } |
b3e07543 | 4156 | out << "// include path" << endl; |
4157 | // Get the include path from the interpreter and remove entries pointing to AliRoot | |
4158 | out << " TString intPath = gInterpreter->GetIncludePath();" << endl; | |
4159 | out << " TObjArray *listpaths = intPath.Tokenize(\" \");" << endl; | |
4160 | out << " TIter nextpath(listpaths);" << endl; | |
4161 | out << " TObjString *pname;" << endl; | |
4162 | out << " while ((pname=(TObjString*)nextpath())) {" << endl; | |
4163 | out << " TString current = pname->GetName();" << endl; | |
4164 | out << " if (current.Contains(\"AliRoot\") || current.Contains(\"ALICE_ROOT\")) continue;" << endl; | |
4165 | out << " gSystem->AddIncludePath(current);" << endl; | |
4166 | out << " }" << endl; | |
4167 | out << " if (listpaths) delete listpaths;" << endl; | |
4168 | if (fIncludePath.Length()) out << " gSystem->AddIncludePath(\"" << fIncludePath.Data() << "\");" << endl; | |
4169 | out << " gROOT->ProcessLine(\".include $ALICE_ROOT/include\");" << endl; | |
4170 | out << " printf(\"Include path: %s\\n\", gSystem->GetIncludePath());" << endl << endl; | |
715da79c | 4171 | if (fMCLoop && !fGeneratorLibs.IsNull()) { |
4172 | out << "// MC generator libraries" << endl; | |
4173 | TObjArray *list = fGeneratorLibs.Tokenize(" "); | |
4174 | TIter next(list); | |
4175 | TObjString *str; | |
4176 | while((str=(TObjString*)next())) { | |
4177 | out << " gSystem->Load(\"" << str->GetName() << "\");" << endl; | |
4178 | } | |
4179 | delete list; | |
4180 | } | |
6da75e0b | 4181 | if (fAdditionalLibs.Length()) { |
4182 | out << "// Add aditional AliRoot libraries" << endl; | |
a41b2882 | 4183 | TString additionalLibs = fAdditionalLibs; |
4184 | additionalLibs.Strip(); | |
4185 | if (additionalLibs.Length() && fFriendLibs.Length()) | |
4186 | additionalLibs += " "; | |
4187 | additionalLibs += fFriendLibs; | |
4188 | TObjArray *list = additionalLibs.Tokenize(" "); | |
6da75e0b | 4189 | TIter next(list); |
4190 | TObjString *str; | |
4191 | while((str=(TObjString*)next())) { | |
4192 | if (str->GetString().Contains(".so")) | |
4193 | out << " gSystem->Load(\"" << str->GetString().Data() << "\");" << endl; | |
652561d5 | 4194 | if (str->GetString().Contains(".par")) |
4195 | out << " if (!" << setupPar << "(\"" << str->GetString() << "\")) return;" << endl; | |
6da75e0b | 4196 | } |
715da79c | 4197 | delete list; |
6da75e0b | 4198 | } |
4199 | out << endl; | |
c57f56b7 | 4200 | out << "// analysis source to be compiled at runtime (if any)" << endl; |
4201 | if (fAnalysisSource.Length()) { | |
4202 | TObjArray *list = fAnalysisSource.Tokenize(" "); | |
4203 | TIter next(list); | |
4204 | TObjString *str; | |
4205 | while((str=(TObjString*)next())) { | |
4206 | out << " gROOT->ProcessLine(\".L " << str->GetString().Data() << "+g\");" << endl; | |
4207 | } | |
4208 | if (list) delete list; | |
4209 | } | |
4210 | out << endl; | |
b3e07543 | 4211 | // out << " printf(\"Currently load libraries:\\n\");" << endl; |
4212 | // out << " printf(\"%s\\n\", gSystem->GetLibraries());" << endl; | |
0f389141 | 4213 | if (fFastReadOption) { |
d3339be3 | 4214 | Warning("WriteAnalysisMacro", "!!! You requested FastRead option. Using xrootd flags to reduce timeouts in the grid jobs. This may skip some files that could be accessed !!! \ |
4215 | \n+++ NOTE: To disable this option, use: plugin->SetFastReadOption(kFALSE)"); | |
0f389141 | 4216 | out << "// fast xrootd reading enabled" << endl; |
4217 | out << " printf(\"!!! You requested FastRead option. Using xrootd flags to reduce timeouts. Note that this may skip some files that could be accessed !!!\");" << endl; | |
b3e07543 | 4218 | out << " gEnv->SetValue(\"XNet.ConnectTimeout\",50);" << endl; |
4219 | out << " gEnv->SetValue(\"XNet.RequestTimeout\",50);" << endl; | |
0f389141 | 4220 | out << " gEnv->SetValue(\"XNet.MaxRedirectCount\",2);" << endl; |
b3e07543 | 4221 | out << " gEnv->SetValue(\"XNet.ReconnectTimeout\",50);" << endl; |
0f389141 | 4222 | out << " gEnv->SetValue(\"XNet.FirstConnectMaxCnt\",1);" << endl << endl; |
21ca8e59 | 4223 | } |
c57f56b7 | 4224 | out << "// read the analysis manager from file" << endl; |
f10e8481 | 4225 | TString analysisFile = fExecutable; |
4226 | analysisFile.ReplaceAll(".sh", ".root"); | |
105631b5 | 4227 | out << " AliAnalysisManager *mgr = AliAnalysisAlien::LoadAnalysisManager(\"" |
4228 | << analysisFile << "\");" << endl; | |
4229 | out << " if (!mgr) return;" << endl; | |
21ca8e59 | 4230 | if (IsLocalTest()) { |
4231 | out << " AliAnalysisAlien *plugin = new AliAnalysisAlien();" << endl; | |
4232 | out << " plugin->SetRunMode(\"test\");" << endl; | |
139fe6ba | 4233 | if (fFileForTestMode.IsNull()) |
4234 | out << " plugin->SetFileForTestMode(\"data.txt\");" << endl; | |
4235 | else | |
4236 | out << " plugin->SetFileForTestMode(\"" << fFileForTestMode << "\");" << endl; | |
922b1fc7 | 4237 | out << " plugin->SetNtestFiles(" << fNtestFiles << ");" << endl; |
4b5d9e21 | 4238 | if (!fFriendChainName.IsNull()) |
b9f1efa5 | 4239 | out << " plugin->SetFriendChainName(\"" << fFriendChainName << "\",\"" << fFriendLibs << "\");" << endl; |
024dfa52 | 4240 | if (IsUseMCchain()) |
4241 | out << " plugin->SetUseMCchain();" << endl; | |
715da79c | 4242 | if (fMCLoop) |
4243 | out << " plugin->SetMCLoop(kTRUE);" << endl; | |
21ca8e59 | 4244 | out << " mgr->SetGridHandler(plugin);" << endl; |
627a5dbe | 4245 | if (AliAnalysisManager::GetAnalysisManager()) { |
7a366e0b | 4246 | out << " mgr->SetDebugLevel(" << AliAnalysisManager::GetAnalysisManager()->GetDebugLevel() << ");" << endl; |
627a5dbe | 4247 | out << " mgr->SetNSysInfo(" << AliAnalysisManager::GetAnalysisManager()->GetNsysInfo() << ");" << endl; |
4248 | } else { | |
7a366e0b | 4249 | out << " mgr->SetDebugLevel(10);" << endl; |
627a5dbe | 4250 | out << " mgr->SetNSysInfo(100);" << endl; |
4251 | } | |
21ca8e59 | 4252 | } |
c57f56b7 | 4253 | out << " mgr->PrintStatus();" << endl; |
52b6a92b | 4254 | if (AliAnalysisManager::GetAnalysisManager()) { |
f866cba5 | 4255 | if (AliAnalysisManager::GetAnalysisManager()->GetDebugLevel()>3) { |
52b6a92b | 4256 | out << " gEnv->SetValue(\"XNet.Debug\", \"1\");" << endl; |
de52b69c | 4257 | } else { |
9a8288ff | 4258 | if (TestBit(AliAnalysisGrid::kTest)) |
4259 | out << " AliLog::SetGlobalLogLevel(AliLog::kWarning);" << endl; | |
4260 | else | |
4261 | out << " AliLog::SetGlobalLogLevel(AliLog::kError);" << endl; | |
52b6a92b | 4262 | } |
4263 | } | |
21ca8e59 | 4264 | if (!IsLocalTest()) { |
715da79c | 4265 | if (fMCLoop) { |
4266 | out << " mgr->SetCacheSize(0);" << endl; | |
4267 | out << " mgr->EventLoop(" << fNMCevents << ");" << endl; | |
4268 | } else { | |
4269 | out << " TChain *chain = CreateChain(\"wn.xml\", anatype);" << endl << endl; | |
4270 | out << " mgr->StartAnalysis(\"localfile\", chain);" << endl; | |
4271 | } | |
21ca8e59 | 4272 | } else { |
715da79c | 4273 | if (fMCLoop) { |
4274 | out << " mgr->SetCacheSize(0);" << endl; | |
4275 | out << " mgr->EventLoop(" << fNMCevents << ");" << endl; | |
7435f77f AG |
4276 | } else { |
4277 | out << " mgr->StartAnalysis(\"localfile\");" << endl; | |
4278 | } | |
242accb2 | 4279 | } |
f7498086 | 4280 | out << " timer.Stop();" << endl; |
4281 | out << " timer.Print();" << endl; | |
c57f56b7 | 4282 | out << "}" << endl << endl; |
715da79c | 4283 | if (!IsLocalTest() && !fMCLoop) { |
fcc9bb6f | 4284 | out <<"//________________________________________________________________________________" << endl; |
c57f56b7 | 4285 | out << "TChain* CreateChain(const char *xmlfile, const char *type=\"ESD\")" << endl; |
4286 | out << "{" << endl; | |
4287 | out << "// Create a chain using url's from xml file" << endl; | |
242accb2 | 4288 | out << " TString filename;" << endl; |
4289 | out << " Int_t run = 0;" << endl; | |
c85cfc0f | 4290 | if (IsUseMCchain()) { |
4291 | out << " TString treename = \"TE\";" << endl; | |
4292 | } else { | |
780ec36d | 4293 | if (!fTreeName.IsNull()) { |
4294 | out << " TString treename = \"" << fTreeName << "\";" << endl; | |
4295 | } else { | |
4296 | out << " TString treename = type;" << endl; | |
4297 | out << " treename.ToLower();" << endl; | |
4298 | out << " treename += \"Tree\";" << endl; | |
4299 | } | |
c85cfc0f | 4300 | } |
e02fee64 | 4301 | out << " printf(\"***************************************\\n\");" << endl; |
4302 | out << " printf(\" Getting chain of trees %s\\n\", treename.Data());" << endl; | |
4303 | out << " printf(\"***************************************\\n\");" << endl; | |
c57f56b7 | 4304 | out << " TAlienCollection *coll = TAlienCollection::Open(xmlfile);" << endl; |
4305 | out << " if (!coll) {" << endl; | |
4306 | out << " ::Error(\"CreateChain\", \"Cannot create an AliEn collection from %s\", xmlfile);" << endl; | |
4307 | out << " return NULL;" << endl; | |
4308 | out << " }" << endl; | |
242accb2 | 4309 | out << " AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();" << endl; |
c57f56b7 | 4310 | out << " TChain *chain = new TChain(treename);" << endl; |
06f67114 | 4311 | if(!fFriendChainName.IsNull()) { |
4312 | out << " TList *friends = new TList();" << endl; | |
4313 | out << " TIter nextfriend(friends);" << endl; | |
4314 | out << " TChain *cfriend = 0;" << endl; | |
4315 | TObjArray *list = fFriendChainName.Tokenize(" "); | |
4316 | TIter next(list); | |
4317 | TObjString *str; | |
4318 | while((str=(TObjString*)next())) { | |
4319 | out << " cfriend = new TChain(treename, \"" << str->GetName() << "\");" << endl; | |
4320 | out << " friends->Add(cfriend);" << endl; | |
4321 | out << " chain->AddFriend(cfriend);" << endl; | |
4322 | } | |
4323 | delete list; | |
4324 | // out << " TChain *chainFriend = new TChain(treename);" << endl; | |
0df6ccf2 | 4325 | } |
c57f56b7 | 4326 | out << " coll->Reset();" << endl; |
0df6ccf2 | 4327 | out << " while (coll->Next()) {" << endl; |
242accb2 | 4328 | out << " filename = coll->GetTURL("");" << endl; |
4329 | out << " if (mgr) {" << endl; | |
4330 | out << " Int_t nrun = AliAnalysisManager::GetRunFromAlienPath(filename);" << endl; | |
4331 | out << " if (nrun && nrun != run) {" << endl; | |
4332 | out << " printf(\"### Run number detected from chain: %d\\n\", nrun);" << endl; | |
4333 | out << " mgr->SetRunFromPath(nrun);" << endl; | |
4334 | out << " run = nrun;" << endl; | |
4335 | out << " }" << endl; | |
4336 | out << " }" << endl; | |
4337 | out << " chain->Add(filename);" << endl; | |
06f67114 | 4338 | if(!fFriendChainName.IsNull()) { |
4339 | out << " TString bpath=coll->GetTURL(\"\");" << endl; | |
4340 | out << " if (bpath.Index(\"#\") > -1) bpath.Remove(bpath.Index(\"#\"));" << endl; | |
4341 | out << " bpath = gSystem->DirName(bpath);" << endl; | |
4342 | out << " bpath += \"/\";" << endl; | |
4343 | out << " TString fileFriend;" << endl; | |
4344 | out << " nextfriend.Reset();" << endl; | |
4345 | out << " while ((cfriend=(TChain*)nextfriend())) {" << endl; | |
4346 | out << " fileFriend = bpath;" << endl; | |
4347 | out << " fileFriend += cfriend->GetTitle();" << endl; | |
4348 | out << " TFile *file = TFile::Open(fileFriend);" << endl; | |
4349 | out << " if (file) {" << endl; | |
4350 | out << " file->Close();" << endl; | |
4351 | out << " cfriend->Add(fileFriend.Data());" << endl; | |
4352 | out << " } else {" << endl; | |
4353 | out << " ::Fatal(\"CreateChain\", \"Cannot open friend file: %s\", fileFriend.Data());" << endl; | |
4354 | out << " return 0;" << endl; | |
4355 | out << " }" << endl; | |
4b5d9e21 | 4356 | out << " }" << endl; |
0df6ccf2 | 4357 | } |
4358 | out << " }" << endl; | |
c57f56b7 | 4359 | out << " if (!chain->GetNtrees()) {" << endl; |
4360 | out << " ::Error(\"CreateChain\", \"No tree found from collection %s\", xmlfile);" << endl; | |
4361 | out << " return NULL;" << endl; | |
4362 | out << " }" << endl; | |
4363 | out << " return chain;" << endl; | |
fcc9bb6f | 4364 | out << "}" << endl << endl; |
c57f56b7 | 4365 | } |
5b273635 | 4366 | if (hasANALYSISalice) { |
4367 | out <<"//________________________________________________________________________________" << endl; | |
4368 | out << "Bool_t SetupPar(const char *package) {" << endl; | |
4369 | out << "// Compile the package and set it up." << endl; | |
4370 | out << " TString pkgdir = package;" << endl; | |
4371 | out << " pkgdir.ReplaceAll(\".par\",\"\");" << endl; | |
b50a41c3 | 4372 | out << " gSystem->Exec(TString::Format(\"tar xvzf %s.par\", pkgdir.Data()));" << endl; |
5b273635 | 4373 | out << " TString cdir = gSystem->WorkingDirectory();" << endl; |
4374 | out << " gSystem->ChangeDirectory(pkgdir);" << endl; | |
4375 | out << " // Check for BUILD.sh and execute" << endl; | |
4376 | out << " if (!gSystem->AccessPathName(\"PROOF-INF/BUILD.sh\")) {" << endl; | |
4377 | out << " printf(\"*******************************\\n\");" << endl; | |
4378 | out << " printf(\"*** Building PAR archive ***\\n\");" << endl; | |
4379 | out << " printf(\"*******************************\\n\");" << endl; | |
4380 | out << " if (gSystem->Exec(\"PROOF-INF/BUILD.sh\")) {" << endl; | |
4381 | out << " ::Error(\"SetupPar\", \"Cannot build par archive %s\", pkgdir.Data());" << endl; | |
4382 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
4383 | out << " return kFALSE;" << endl; | |
4384 | out << " }" << endl; | |
4385 | out << " } else {" << endl; | |
4386 | out << " ::Error(\"SetupPar\",\"Cannot access PROOF-INF/BUILD.sh for package %s\", pkgdir.Data());" << endl; | |
4387 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
4388 | out << " return kFALSE;" << endl; | |
4389 | out << " }" << endl; | |
4390 | out << " // Check for SETUP.C and execute" << endl; | |
4391 | out << " if (!gSystem->AccessPathName(\"PROOF-INF/SETUP.C\")) {" << endl; | |
4392 | out << " printf(\"*******************************\\n\");" << endl; | |
4393 | out << " printf(\"*** Setup PAR archive ***\\n\");" << endl; | |
4394 | out << " printf(\"*******************************\\n\");" << endl; | |
4395 | out << " gROOT->Macro(\"PROOF-INF/SETUP.C\");" << endl; | |
4396 | out << " } else {" << endl; | |
4397 | out << " ::Error(\"SetupPar\",\"Cannot access PROOF-INF/SETUP.C for package %s\", pkgdir.Data());" << endl; | |
4398 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
4399 | out << " return kFALSE;" << endl; | |
4400 | out << " }" << endl; | |
4401 | out << " // Restore original workdir" << endl; | |
4402 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
4403 | out << " return kTRUE;" << endl; | |
4404 | out << "}" << endl; | |
4405 | } | |
c57f56b7 | 4406 | Info("WriteAnalysisMacro", "\n##### Analysis macro to run on worker nodes <%s> written",fAnalysisMacro.Data()); |
4407 | } | |
4408 | Bool_t copy = kTRUE; | |
d3b18c4c | 4409 | if (fProductionMode || TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; |
c57f56b7 | 4410 | if (copy) { |
4411 | CdWork(); | |
4412 | TString workdir = gGrid->GetHomeDirectory(); | |
4413 | workdir += fGridWorkingDir; | |
4414 | if (FileExists(fAnalysisMacro)) gGrid->Rm(fAnalysisMacro); | |
c57f56b7 | 4415 | Info("WriteAnalysisMacro", "\n##### Copying analysis macro: <%s> to your alien workspace", fAnalysisMacro.Data()); |
6c395669 | 4416 | // TFile::Cp(Form("file:%s",fAnalysisMacro.Data()), Form("alien://%s/%s", workdir.Data(), fAnalysisMacro.Data())); |
4417 | if (!copyLocal2Alien("WriteAnalysisMacro",fAnalysisMacro.Data(), | |
4418 | Form("alien://%s/%s", workdir.Data(), | |
4419 | fAnalysisMacro.Data()))) Fatal("","Terminating"); | |
c57f56b7 | 4420 | } |
4421 | } | |
4422 | ||
0f389141 | 4423 | //______________________________________________________________________________ |
4424 | void AliAnalysisAlien::WriteMergingMacro() | |
4425 | { | |
4426 | // Write a macro to merge the outputs per master job. | |
4427 | if (!fMergeViaJDL) return; | |
4428 | if (!fOutputFiles.Length()) { | |
4429 | Error("WriteMergingMacro", "No output file names defined. Are you running the right AliAnalysisAlien configuration ?"); | |
4430 | return; | |
4431 | } | |
ec5acdce | 4432 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); |
0f389141 | 4433 | TString mergingMacro = fExecutable; |
4434 | mergingMacro.ReplaceAll(".sh","_merge.C"); | |
139fe6ba | 4435 | if (gGrid && !fGridOutputDir.Contains("/")) fGridOutputDir = Form("%s/%s/%s", gGrid->GetHomeDirectory(), fGridWorkingDir.Data(), fGridOutputDir.Data()); |
0f389141 | 4436 | if (!TestBit(AliAnalysisGrid::kSubmit)) { |
4437 | ofstream out; | |
4438 | out.open(mergingMacro.Data(), ios::out); | |
4439 | if (!out.good()) { | |
4440 | Error("WriteMergingMacro", "could not open file %s for writing", fAnalysisMacro.Data()); | |
4441 | return; | |
4442 | } | |
5b273635 | 4443 | Bool_t hasSTEERBase = kFALSE; |
4444 | Bool_t hasESD = kFALSE; | |
4445 | Bool_t hasAOD = kFALSE; | |
4446 | Bool_t hasANALYSIS = kFALSE; | |
7ea40ac8 | 4447 | Bool_t hasOADB = kFALSE; |
5b273635 | 4448 | Bool_t hasANALYSISalice = kFALSE; |
4449 | Bool_t hasCORRFW = kFALSE; | |
0f389141 | 4450 | TString func = mergingMacro; |
4451 | TString comment; | |
4452 | func.ReplaceAll(".C", ""); | |
f47d5cb4 | 4453 | out << "void " << func.Data() << "(const char *dir, Int_t stage=0)" << endl; |
0f389141 | 4454 | out << "{" << endl; |
4455 | out << "// Automatically generated merging macro executed in grid subjobs" << endl << endl; | |
4456 | out << " TStopwatch timer;" << endl; | |
4457 | out << " timer.Start();" << endl << endl; | |
b3e07543 | 4458 | // Reset existing include path |
4459 | out << "// Reset existing include path and add current directory first in the search" << endl; | |
4460 | out << " gSystem->SetIncludePath(\"-I.\");" << endl; | |
7c2cd90a | 4461 | if (!fExecutableCommand.Contains("aliroot")) { |
4462 | out << "// load base root libraries" << endl; | |
4463 | out << " gSystem->Load(\"libTree\");" << endl; | |
4464 | out << " gSystem->Load(\"libGeom\");" << endl; | |
4465 | out << " gSystem->Load(\"libVMC\");" << endl; | |
4466 | out << " gSystem->Load(\"libPhysics\");" << endl << endl; | |
4467 | out << " gSystem->Load(\"libMinuit\");" << endl << endl; | |
4468 | } | |
0f389141 | 4469 | if (fAdditionalRootLibs.Length()) { |
4470 | // in principle libtree /lib geom libvmc etc. can go into this list, too | |
4471 | out << "// Add aditional libraries" << endl; | |
4472 | TObjArray *list = fAdditionalRootLibs.Tokenize(" "); | |
4473 | TIter next(list); | |
4474 | TObjString *str; | |
4475 | while((str=(TObjString*)next())) { | |
4476 | if (str->GetString().Contains(".so")) | |
4477 | out << " gSystem->Load(\"" << str->GetString().Data() << "\");" << endl; | |
4478 | } | |
4479 | if (list) delete list; | |
4480 | } | |
0f389141 | 4481 | out << "// Load analysis framework libraries" << endl; |
4482 | if (!fPackages) { | |
7c2cd90a | 4483 | if (!fExecutableCommand.Contains("aliroot")) { |
4484 | out << " gSystem->Load(\"libSTEERBase\");" << endl; | |
4485 | out << " gSystem->Load(\"libESD\");" << endl; | |
4486 | out << " gSystem->Load(\"libAOD\");" << endl; | |
4487 | } | |
0f389141 | 4488 | out << " gSystem->Load(\"libANALYSIS\");" << endl; |
7ea40ac8 | 4489 | out << " gSystem->Load(\"libOADB\");" << endl; |
0f389141 | 4490 | out << " gSystem->Load(\"libANALYSISalice\");" << endl; |
4491 | out << " gSystem->Load(\"libCORRFW\");" << endl << endl; | |
4492 | } else { | |
4493 | TIter next(fPackages); | |
4494 | TObject *obj; | |
4495 | TString pkgname; | |
5b273635 | 4496 | TString setupPar = "AliAnalysisAlien::SetupPar"; |
0f389141 | 4497 | while ((obj=next())) { |
4498 | pkgname = obj->GetName(); | |
4499 | if (pkgname == "STEERBase" || | |
4500 | pkgname == "STEERBase.par") hasSTEERBase = kTRUE; | |
4501 | if (pkgname == "ESD" || | |
4502 | pkgname == "ESD.par") hasESD = kTRUE; | |
4503 | if (pkgname == "AOD" || | |
4504 | pkgname == "AOD.par") hasAOD = kTRUE; | |
4505 | if (pkgname == "ANALYSIS" || | |
4506 | pkgname == "ANALYSIS.par") hasANALYSIS = kTRUE; | |
7ea40ac8 | 4507 | if (pkgname == "OADB" || |
4508 | pkgname == "OADB.par") hasOADB = kTRUE; | |
0f389141 | 4509 | if (pkgname == "ANALYSISalice" || |
4510 | pkgname == "ANALYSISalice.par") hasANALYSISalice = kTRUE; | |
4511 | if (pkgname == "CORRFW" || | |
4512 | pkgname == "CORRFW.par") hasCORRFW = kTRUE; | |
4513 | } | |
5b273635 | 4514 | if (hasANALYSISalice) setupPar = "SetupPar"; |
0f389141 | 4515 | if (!hasSTEERBase) out << " gSystem->Load(\"libSTEERBase\");" << endl; |
5b273635 | 4516 | else out << " if (!" << setupPar << "(\"STEERBase\")) return;" << endl; |
0f389141 | 4517 | if (!hasESD) out << " gSystem->Load(\"libESD\");" << endl; |
5b273635 | 4518 | else out << " if (!" << setupPar << "(\"ESD\")) return;" << endl; |
0f389141 | 4519 | if (!hasAOD) out << " gSystem->Load(\"libAOD\");" << endl; |
5b273635 | 4520 | else out << " if (!" << setupPar << "(\"AOD\")) return;" << endl; |
0bc15bcd | 4521 | out << " gSystem->Load(\"libOADB\");" << endl; |
0f389141 | 4522 | if (!hasANALYSIS) out << " gSystem->Load(\"libANALYSIS\");" << endl; |
5b273635 | 4523 | else out << " if (!" << setupPar << "(\"ANALYSIS\")) return;" << endl; |
7ea40ac8 | 4524 | if (!hasOADB) out << " gSystem->Load(\"libOADB\");" << endl; |
4525 | else out << " if (!" << setupPar << "(\"OADB\")) return;" << endl; | |
0f389141 | 4526 | if (!hasANALYSISalice) out << " gSystem->Load(\"libANALYSISalice\");" << endl; |
5b273635 | 4527 | else out << " if (!" << setupPar << "(\"ANALYSISalice\")) return;" << endl; |
0f389141 | 4528 | if (!hasCORRFW) out << " gSystem->Load(\"libCORRFW\");" << endl << endl; |
5b273635 | 4529 | else out << " if (!" << setupPar << "(\"CORRFW\")) return;" << endl << endl; |
0f389141 | 4530 | out << "// Compile other par packages" << endl; |
4531 | next.Reset(); | |
4532 | while ((obj=next())) { | |
4533 | pkgname = obj->GetName(); | |
4534 | if (pkgname == "STEERBase" || | |
4535 | pkgname == "STEERBase.par" || | |
4536 | pkgname == "ESD" || | |
4537 | pkgname == "ESD.par" || | |
4538 | pkgname == "AOD" || | |
4539 | pkgname == "AOD.par" || | |
4540 | pkgname == "ANALYSIS" || | |
4541 | pkgname == "ANALYSIS.par" || | |
7ea40ac8 | 4542 | pkgname == "OADB" || |
4543 | pkgname == "OADB.par" || | |
0f389141 | 4544 | pkgname == "ANALYSISalice" || |
4545 | pkgname == "ANALYSISalice.par" || | |
4546 | pkgname == "CORRFW" || | |
4547 | pkgname == "CORRFW.par") continue; | |
5b273635 | 4548 | out << " if (!" << setupPar << "(\"" << obj->GetName() << "\")) return;" << endl; |
0f389141 | 4549 | } |
4550 | } | |
b3e07543 | 4551 | out << "// include path" << endl; |
4552 | // Get the include path from the interpreter and remove entries pointing to AliRoot | |
4553 | out << " TString intPath = gInterpreter->GetIncludePath();" << endl; | |
4554 | out << " TObjArray *listpaths = intPath.Tokenize(\" \");" << endl; | |
4555 | out << " TIter nextpath(listpaths);" << endl; | |
4556 | out << " TObjString *pname;" << endl; | |
4557 | out << " while ((pname=(TObjString*)nextpath())) {" << endl; | |
4558 | out << " TString current = pname->GetName();" << endl; | |
4559 | out << " if (current.Contains(\"AliRoot\") || current.Contains(\"ALICE_ROOT\")) continue;" << endl; | |
4560 | out << " gSystem->AddIncludePath(current);" << endl; | |
4561 | out << " }" << endl; | |
4562 | out << " if (listpaths) delete listpaths;" << endl; | |
4563 | if (fIncludePath.Length()) out << " gSystem->AddIncludePath(\"" << fIncludePath.Data() << "\");" << endl; | |
4564 | out << " gROOT->ProcessLine(\".include $ALICE_ROOT/include\");" << endl; | |
4565 | out << " printf(\"Include path: %s\\n\", gSystem->GetIncludePath());" << endl << endl; | |
0d239a91 AG |
4566 | if (fMCLoop && !fGeneratorLibs.IsNull()) { |
4567 | out << "// MC generator libraries" << endl; | |
4568 | TObjArray *list = fGeneratorLibs.Tokenize(" "); | |
4569 | TIter next(list); | |
4570 | TObjString *str; | |
4571 | while((str=(TObjString*)next())) { | |
4572 | out << " gSystem->Load(\"" << str->GetName() << "\");" << endl; | |
4573 | } | |
4574 | delete list; | |
4575 | } | |
0f389141 | 4576 | if (fAdditionalLibs.Length()) { |
4577 | out << "// Add aditional AliRoot libraries" << endl; | |
a41b2882 | 4578 | TString additionalLibs = fAdditionalLibs; |
4579 | additionalLibs.Strip(); | |
4580 | if (additionalLibs.Length() && fFriendLibs.Length()) | |
4581 | additionalLibs += " "; | |
4582 | additionalLibs += fFriendLibs; | |
4583 | TObjArray *list = additionalLibs.Tokenize(" "); | |
0f389141 | 4584 | TIter next(list); |
4585 | TObjString *str; | |
4586 | while((str=(TObjString*)next())) { | |
4587 | if (str->GetString().Contains(".so")) | |
4588 | out << " gSystem->Load(\"" << str->GetString().Data() << "\");" << endl; | |
4589 | } | |
4590 | if (list) delete list; | |
4591 | } | |
4592 | out << endl; | |
4593 | out << "// Analysis source to be compiled at runtime (if any)" << endl; | |
4594 | if (fAnalysisSource.Length()) { | |
4595 | TObjArray *list = fAnalysisSource.Tokenize(" "); | |
4596 | TIter next(list); | |
4597 | TObjString *str; | |
4598 | while((str=(TObjString*)next())) { | |
4599 | out << " gROOT->ProcessLine(\".L " << str->GetString().Data() << "+g\");" << endl; | |
4600 | } | |
4601 | if (list) delete list; | |
4602 | } | |
149d288c | 4603 | out << endl; |
4604 | ||
0f389141 | 4605 | if (fFastReadOption) { |
4606 | Warning("WriteMergingMacro", "!!! You requested FastRead option. Using xrootd flags to reduce timeouts in the grid merging jobs. Note that this may skip some files that could be accessed !!!"); | |
4607 | out << "// fast xrootd reading enabled" << endl; | |
4608 | out << " printf(\"!!! You requested FastRead option. Using xrootd flags to reduce timeouts. Note that this may skip some files that could be accessed !!!\");" << endl; | |
b3e07543 | 4609 | out << " gEnv->SetValue(\"XNet.ConnectTimeout\",50);" << endl; |
4610 | out << " gEnv->SetValue(\"XNet.RequestTimeout\",50);" << endl; | |
0f389141 | 4611 | out << " gEnv->SetValue(\"XNet.MaxRedirectCount\",2);" << endl; |
b3e07543 | 4612 | out << " gEnv->SetValue(\"XNet.ReconnectTimeout\",50);" << endl; |
0f389141 | 4613 | out << " gEnv->SetValue(\"XNet.FirstConnectMaxCnt\",1);" << endl << endl; |
e8b839ab | 4614 | } |
4615 | // Change temp directory to current one | |
fdee57f1 | 4616 | out << "// Connect to AliEn" << endl; |
4617 | out << " if (!TGrid::Connect(\"alien://\")) return;" << endl; | |
e8b839ab | 4618 | out << "// Set temporary merging directory to current one" << endl; |
4619 | out << " gSystem->Setenv(\"TMPDIR\", gSystem->pwd());" << endl << endl; | |
70c52cf3 | 4620 | out << "// Set temporary compilation directory to current one" << endl; |
4621 | out << " gSystem->SetBuildDir(gSystem->pwd(), kTRUE);" << endl << endl; | |
7c2cd90a | 4622 | out << " TString outputDir = dir;" << endl; |
d87f72d5 | 4623 | if (IsMergeAOD()) |
4624 | out << " TString outputFiles = \"" << GetListOfFiles("outaod") << "\";" << endl; | |
4625 | else | |
4626 | out << " TString outputFiles = \"" << GetListOfFiles("out") << "\";" << endl; | |
37d21c01 | 4627 | out << " TString mergeExcludes = \"" << fMergeExcludes << " " << fRegisterExcludes << "\";" << endl; |
58268c13 | 4628 | out << " TObjArray *list = outputFiles.Tokenize(\",\");" << endl; |
0f389141 | 4629 | out << " TIter *iter = new TIter(list);" << endl; |
4630 | out << " TObjString *str;" << endl; | |
a2f5fc01 | 4631 | out << " TString outputFile;" << endl; |
0f389141 | 4632 | out << " Bool_t merged = kTRUE;" << endl; |
ec5acdce | 4633 | TString analysisFile = fExecutable; |
4634 | analysisFile.ReplaceAll(".sh", ".root"); | |
4635 | out << " AliAnalysisManager *mgr = AliAnalysisAlien::LoadAnalysisManager(\"" | |
4636 | << analysisFile << "\");" << endl; | |
4637 | out << " if (!mgr) {" << endl; | |
4638 | out << " printf(\"ERROR: Analysis manager could not be extracted from file \");" << endl; | |
4639 | out << " return;" << endl; | |
4640 | out << " }" << endl; | |
d66aa2a9 | 4641 | if (IsLocalTest()) { |
0c0825e4 | 4642 | out << " printf(\"===================================\\n\");" << endl; |
d66aa2a9 | 4643 | out << " printf(\"Testing merging...\\n\");" << endl; |
0c0825e4 | 4644 | out << " printf(\"===================================\\n\");" << endl; |
d66aa2a9 | 4645 | } |
0f389141 | 4646 | out << " while((str=(TObjString*)iter->Next())) {" << endl; |
a2f5fc01 | 4647 | out << " outputFile = str->GetString();" << endl; |
7c2cd90a | 4648 | out << " if (outputFile.Contains(\"*\")) continue;" << endl; |
a2f5fc01 | 4649 | out << " Int_t index = outputFile.Index(\"@\");" << endl; |
4650 | out << " if (index > 0) outputFile.Remove(index);" << endl; | |
0f389141 | 4651 | out << " // Skip already merged outputs" << endl; |
a2f5fc01 | 4652 | out << " if (!gSystem->AccessPathName(outputFile)) {" << endl; |
d66aa2a9 | 4653 | out << " printf(\"Output file <%s> found. Not merging again.\\n\",outputFile.Data());" << endl; |
0f389141 | 4654 | out << " continue;" << endl; |
4655 | out << " }" << endl; | |
a2f5fc01 | 4656 | out << " if (mergeExcludes.Contains(outputFile.Data())) continue;" << endl; |
b3e07543 | 4657 | out << " merged = AliAnalysisAlien::MergeOutput(outputFile, outputDir, " << fMaxMergeFiles << ", stage);" << endl; |
0f389141 | 4658 | out << " if (!merged) {" << endl; |
a2f5fc01 | 4659 | out << " printf(\"ERROR: Cannot merge %s\\n\", outputFile.Data());" << endl; |
7c2cd90a | 4660 | out << " return;" << endl; |
0f389141 | 4661 | out << " }" << endl; |
4662 | out << " }" << endl; | |
d66aa2a9 | 4663 | if (mgr && mgr->IsCollectThroughput() && !IsLocalTest()) { |
ec5acdce | 4664 | out << " TString infolog = \"" << mgr->GetFileInfoLog() << "\";" << endl; |
4665 | out << " AliAnalysisAlien::MergeInfo(infolog, outputDir);" << endl; | |
4666 | } | |
7c2cd90a | 4667 | out << " // all outputs merged, validate" << endl; |
4668 | out << " ofstream out;" << endl; | |
4669 | out << " out.open(\"outputs_valid\", ios::out);" << endl; | |
4670 | out << " out.close();" << endl; | |
4671 | out << " // read the analysis manager from file" << endl; | |
d66aa2a9 | 4672 | if (IsLocalTest()) { |
0c0825e4 | 4673 | out << " printf(\"===================================\\n\");" << endl; |
d66aa2a9 | 4674 | out << " printf(\"Testing Terminate()...\\n\");" << endl; |
0c0825e4 | 4675 | out << " printf(\"===================================\\n\");" << endl; |
d66aa2a9 | 4676 | } else { |
4677 | out << " if (!outputDir.Contains(\"Stage\")) return;" << endl; | |
4678 | } | |
5c4250fc | 4679 | out << " mgr->SetRunFromPath(mgr->GetRunFromAlienPath(dir));" << endl; |
b385fec0 | 4680 | out << " mgr->SetSkipTerminate(kFALSE);" << endl; |
f866cba5 | 4681 | out << " mgr->PrintStatus();" << endl; |
ec5acdce | 4682 | if (mgr) { |
4683 | if (mgr->GetDebugLevel()>3) { | |
f866cba5 | 4684 | out << " gEnv->SetValue(\"XNet.Debug\", \"1\");" << endl; |
4685 | } else { | |
9a8288ff | 4686 | if (TestBit(AliAnalysisGrid::kTest)) |
4687 | out << " AliLog::SetGlobalLogLevel(AliLog::kWarning);" << endl; | |
4688 | else | |
4689 | out << " AliLog::SetGlobalLogLevel(AliLog::kError);" << endl; | |
f866cba5 | 4690 | } |
4691 | } | |
9a8288ff | 4692 | out << " TTree *tree = NULL;" << endl; |
4693 | out << " mgr->StartAnalysis(\"gridterminate\", tree);" << endl; | |
0f389141 | 4694 | out << "}" << endl << endl; |
5b273635 | 4695 | if (hasANALYSISalice) { |
4696 | out <<"//________________________________________________________________________________" << endl; | |
4697 | out << "Bool_t SetupPar(const char *package) {" << endl; | |
4698 | out << "// Compile the package and set it up." << endl; | |
4699 | out << " TString pkgdir = package;" << endl; | |
4700 | out << " pkgdir.ReplaceAll(\".par\",\"\");" << endl; | |
b50a41c3 | 4701 | out << " gSystem->Exec(TString::Format(\"tar xvzf %s.par\", pkgdir.Data()));" << endl; |
5b273635 | 4702 | out << " TString cdir = gSystem->WorkingDirectory();" << endl; |
4703 | out << " gSystem->ChangeDirectory(pkgdir);" << endl; | |
4704 | out << " // Check for BUILD.sh and execute" << endl; | |
4705 | out << " if (!gSystem->AccessPathName(\"PROOF-INF/BUILD.sh\")) {" << endl; | |
4706 | out << " printf(\"*******************************\\n\");" << endl; | |
4707 | out << " printf(\"*** Building PAR archive ***\\n\");" << endl; | |
4708 | out << " printf(\"*******************************\\n\");" << endl; | |
4709 | out << " if (gSystem->Exec(\"PROOF-INF/BUILD.sh\")) {" << endl; | |
4710 | out << " ::Error(\"SetupPar\", \"Cannot build par archive %s\", pkgdir.Data());" << endl; | |
4711 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
4712 | out << " return kFALSE;" << endl; | |
4713 | out << " }" << endl; | |
4714 | out << " } else {" << endl; | |
4715 | out << " ::Error(\"SetupPar\",\"Cannot access PROOF-INF/BUILD.sh for package %s\", pkgdir.Data());" << endl; | |
4716 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
4717 | out << " return kFALSE;" << endl; | |
4718 | out << " }" << endl; | |
4719 | out << " // Check for SETUP.C and execute" << endl; | |
4720 | out << " if (!gSystem->AccessPathName(\"PROOF-INF/SETUP.C\")) {" << endl; | |
4721 | out << " printf(\"*******************************\\n\");" << endl; | |
4722 | out << " printf(\"*** Setup PAR archive ***\\n\");" << endl; | |
4723 | out << " printf(\"*******************************\\n\");" << endl; | |
4724 | out << " gROOT->Macro(\"PROOF-INF/SETUP.C\");" << endl; | |
4725 | out << " } else {" << endl; | |
4726 | out << " ::Error(\"SetupPar\",\"Cannot access PROOF-INF/SETUP.C for package %s\", pkgdir.Data());" << endl; | |
4727 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
4728 | out << " return kFALSE;" << endl; | |
4729 | out << " }" << endl; | |
4730 | out << " // Restore original workdir" << endl; | |
4731 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
4732 | out << " return kTRUE;" << endl; | |
4733 | out << "}" << endl; | |
4734 | } | |
0f389141 | 4735 | } |
4736 | Bool_t copy = kTRUE; | |
d3b18c4c | 4737 | if (fProductionMode || TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; |
0f389141 | 4738 | if (copy) { |
4739 | CdWork(); | |
4740 | TString workdir = gGrid->GetHomeDirectory(); | |
4741 | workdir += fGridWorkingDir; | |
4742 | if (FileExists(mergingMacro)) gGrid->Rm(mergingMacro); | |
4743 | Info("WriteMergingMacro", "\n##### Copying merging macro: <%s> to your alien workspace", mergingMacro.Data()); | |
6c395669 | 4744 | // TFile::Cp(Form("file:%s",mergingMacro.Data()), Form("alien://%s/%s", workdir.Data(), mergingMacro.Data())); |
4745 | if (!copyLocal2Alien("WriteMergeMacro",mergingMacro.Data(), | |
4746 | Form("%s/%s", workdir.Data(), mergingMacro.Data()))) Fatal("","Terminating"); | |
0f389141 | 4747 | } |
4748 | } | |
4749 | ||
4750 | //______________________________________________________________________________ | |
4751 | Bool_t AliAnalysisAlien::SetupPar(const char *package) | |
4752 | { | |
205b201f | 4753 | // Compile the par file archive pointed by <package>. This must be present in the current directory. |
0f389141 | 4754 | // Note that for loading the compiled library. The current directory should have precedence in |
4755 | // LD_LIBRARY_PATH | |
4756 | TString pkgdir = package; | |
4757 | pkgdir.ReplaceAll(".par",""); | |
b50a41c3 | 4758 | gSystem->Exec(TString::Format("tar xzf %s.par", pkgdir.Data())); |
0f389141 | 4759 | TString cdir = gSystem->WorkingDirectory(); |
4760 | gSystem->ChangeDirectory(pkgdir); | |
4761 | // Check for BUILD.sh and execute | |
4762 | if (!gSystem->AccessPathName("PROOF-INF/BUILD.sh")) { | |
4763 | printf("**************************************************\n"); | |
4764 | printf("*** Building PAR archive %s\n", package); | |
4765 | printf("**************************************************\n"); | |
4766 | if (gSystem->Exec("PROOF-INF/BUILD.sh")) { | |
4767 | ::Error("SetupPar", "Cannot build par archive %s", pkgdir.Data()); | |
4768 | gSystem->ChangeDirectory(cdir); | |
4769 | return kFALSE; | |
4770 | } | |
4771 | } else { | |
4772 | ::Error("SetupPar","Cannot access PROOF-INF/BUILD.sh for package %s", pkgdir.Data()); | |
4773 | gSystem->ChangeDirectory(cdir); | |
4774 | return kFALSE; | |
4775 | } | |
4776 | // Check for SETUP.C and execute | |
4777 | if (!gSystem->AccessPathName("PROOF-INF/SETUP.C")) { | |
4778 | printf("**************************************************\n"); | |
4779 | printf("*** Setup PAR archive %s\n", package); | |
4780 | printf("**************************************************\n"); | |
4781 | gROOT->Macro("PROOF-INF/SETUP.C"); | |
4782 | printf("*** Loaded library: %s\n", gSystem->GetLibraries(pkgdir,"",kFALSE)); | |
4783 | } else { | |
4784 | ::Error("SetupPar","Cannot access PROOF-INF/SETUP.C for package %s", pkgdir.Data()); | |
4785 | gSystem->ChangeDirectory(cdir); | |
4786 | return kFALSE; | |
4787 | } | |
4788 | // Restore original workdir | |
4789 | gSystem->ChangeDirectory(cdir); | |
4790 | return kTRUE; | |
4791 | } | |
4792 | ||
c57f56b7 | 4793 | //______________________________________________________________________________ |
4794 | void AliAnalysisAlien::WriteExecutable() | |
4795 | { | |
4796 | // Generate the alien executable script. | |
5aa94dc3 | 4797 | // Patch executable with -x to catch error code |
4798 | if (fExecutableCommand.Contains("root") && | |
4799 | fExecutableCommand.Contains("-q") && | |
4800 | !fExecutableCommand.Contains("-x")) fExecutableCommand += " -x"; | |
c57f56b7 | 4801 | if (!TestBit(AliAnalysisGrid::kSubmit)) { |
4802 | ofstream out; | |
4803 | out.open(fExecutable.Data(), ios::out); | |
4804 | if (out.bad()) { | |
5513444a | 4805 | Error("WriteExecutable", "Bad file name for executable: %s", fExecutable.Data()); |
c57f56b7 | 4806 | return; |
4807 | } | |
4808 | out << "#!/bin/bash" << endl; | |
2a4d5166 | 4809 | // Make sure we can properly compile par files |
4810 | out << "export LD_LIBRARY_PATH=.:$LD_LIBRARY_PATH" << endl; | |
c57f56b7 | 4811 | out << "echo \"=========================================\"" << endl; |
4812 | out << "echo \"############## PATH : ##############\"" << endl; | |
4813 | out << "echo $PATH" << endl; | |
4814 | out << "echo \"############## LD_LIBRARY_PATH : ##############\"" << endl; | |
4815 | out << "echo $LD_LIBRARY_PATH" << endl; | |
4816 | out << "echo \"############## ROOTSYS : ##############\"" << endl; | |
4817 | out << "echo $ROOTSYS" << endl; | |
4818 | out << "echo \"############## which root : ##############\"" << endl; | |
4819 | out << "which root" << endl; | |
4820 | out << "echo \"############## ALICE_ROOT : ##############\"" << endl; | |
4821 | out << "echo $ALICE_ROOT" << endl; | |
4822 | out << "echo \"############## which aliroot : ##############\"" << endl; | |
4823 | out << "which aliroot" << endl; | |
9c5ddadc | 4824 | out << "echo \"############## system limits : ##############\"" << endl; |
4825 | out << "ulimit -a" << endl; | |
4826 | out << "echo \"############## memory : ##############\"" << endl; | |
4827 | out << "free -m" << endl; | |
c57f56b7 | 4828 | out << "echo \"=========================================\"" << endl << endl; |
0a1c1f7f | 4829 | out << fExecutableCommand << " "; |
370c9880 | 4830 | out << fAnalysisMacro.Data() << " " << fExecutableArgs.Data() << endl; |
4831 | out << "RET=$?" << endl; | |
4832 | out << "if [ \"$RET\" != \"0\" ];then" << endl; | |
4833 | out << " echo \"======== ERROR : " << fAnalysisMacro.Data() << " finished with NON zero code: $RET ========\"" << endl; | |
4834 | out << " if [ \"$RET\" -gt 128 ] && [ \"$RET\" -lt 160 ]; then"<<endl; | |
4835 | out << " let sig=\"$RET - 128\""<<endl; | |
4836 | out << " sigs='HUP INT QUIT ILL TRAP ABRT BUS FPE"<<endl; | |
4837 | out << " KILL USR1 SEGV USR2 PIPE ALRM TERM STKFLT"<<endl; | |
4838 | out << " CHLD CONT STOP TSTP TTIN TTOU URG XCPU"<<endl; | |
4839 | out << " XFSZ VTALRM PROF WINCH IO PWR SYS'"<<endl; | |
4840 | out << " sig=SIG`echo $sigs | awk '{ print $'\"$sig\"' }'`"<<endl; | |
4841 | out << " echo \"======== it appears to have been killed with signal: $sig ========\""<<endl; | |
4842 | out << " fi"<<endl; | |
4843 | out << " exit $RET"<< endl; | |
4844 | out << "fi" << endl << endl ; | |
4845 | out << "echo \"======== " << fAnalysisMacro.Data() << " finished with exit code: $RET ========\"" << endl; | |
9c5ddadc | 4846 | out << "echo \"############## memory after: ##############\"" << endl; |
4847 | out << "free -m" << endl; | |
c57f56b7 | 4848 | } |
4849 | Bool_t copy = kTRUE; | |
d3b18c4c | 4850 | if (fProductionMode || TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; |
c57f56b7 | 4851 | if (copy) { |
4852 | CdWork(); | |
4853 | TString workdir = gGrid->GetHomeDirectory(); | |
4854 | workdir += fGridWorkingDir; | |
6da4839e | 4855 | TString executable = TString::Format("%s/%s", workdir.Data(), fExecutable.Data()); |
c57f56b7 | 4856 | if (FileExists(executable)) gGrid->Rm(executable); |
d3b18c4c | 4857 | Info("WriteExecutable", "\n##### Copying executable file <%s> to your AliEn bin directory", fExecutable.Data()); |
6c395669 | 4858 | if (!copyLocal2Alien("WriteExecutable",fExecutable.Data(), |
4859 | executable.Data())) Fatal("","Terminating"); | |
c57f56b7 | 4860 | } |
4861 | } | |
4862 | ||
0f389141 | 4863 | //______________________________________________________________________________ |
4864 | void AliAnalysisAlien::WriteMergeExecutable() | |
4865 | { | |
4866 | // Generate the alien executable script for the merging job. | |
4867 | if (!fMergeViaJDL) return; | |
4868 | TString mergeExec = fExecutable; | |
4869 | mergeExec.ReplaceAll(".sh", "_merge.sh"); | |
4870 | if (!TestBit(AliAnalysisGrid::kSubmit)) { | |
4871 | ofstream out; | |
4872 | out.open(mergeExec.Data(), ios::out); | |
4873 | if (out.bad()) { | |
4874 | Error("WriteMergingExecutable", "Bad file name for executable: %s", mergeExec.Data()); | |
4875 | return; | |
4876 | } | |
4877 | out << "#!/bin/bash" << endl; | |
2a4d5166 | 4878 | // Make sure we can properly compile par files |
4879 | out << "export LD_LIBRARY_PATH=.:$LD_LIBRARY_PATH" << endl; | |
0f389141 | 4880 | out << "echo \"=========================================\"" << endl; |
4881 | out << "echo \"############## PATH : ##############\"" << endl; | |
4882 | out << "echo $PATH" << endl; | |
4883 | out << "echo \"############## LD_LIBRARY_PATH : ##############\"" << endl; | |
4884 | out << "echo $LD_LIBRARY_PATH" << endl; | |
4885 | out << "echo \"############## ROOTSYS : ##############\"" << endl; | |
4886 | out << "echo $ROOTSYS" << endl; | |
4887 | out << "echo \"############## which root : ##############\"" << endl; | |
4888 | out << "which root" << endl; | |
4889 | out << "echo \"############## ALICE_ROOT : ##############\"" << endl; | |
4890 | out << "echo $ALICE_ROOT" << endl; | |
4891 | out << "echo \"############## which aliroot : ##############\"" << endl; | |
4892 | out << "which aliroot" << endl; | |
4893 | out << "echo \"############## system limits : ##############\"" << endl; | |
4894 | out << "ulimit -a" << endl; | |
4895 | out << "echo \"############## memory : ##############\"" << endl; | |
4896 | out << "free -m" << endl; | |
4897 | out << "echo \"=========================================\"" << endl << endl; | |
0f389141 | 4898 | TString mergeMacro = fExecutable; |
4899 | mergeMacro.ReplaceAll(".sh", "_merge.C"); | |
f790bc1b | 4900 | if (IsOneStageMerging()) |
4901 | out << "export ARG=\"" << mergeMacro << "(\\\"$1\\\")\"" << endl; | |
4902 | else | |
f47d5cb4 | 4903 | out << "export ARG=\"" << mergeMacro << "(\\\"$1\\\",$2)\"" << endl; |
0f389141 | 4904 | out << fExecutableCommand << " " << "$ARG" << endl; |
370c9880 | 4905 | out << "RET=$?" << endl; |
4906 | out << "if [ \"$RET\" != \"0\" ];then" << endl; | |
4907 | out << " echo \"======== ERROR : " << fAnalysisMacro.Data() << " finished with NON zero code: $RET ========\"" << endl; | |
4908 | out << " if [ \"$RET\" -gt 128 ] && [ \"$RET\" -lt 160 ]; then"<<endl; | |
4909 | out << " let sig=\"$RET - 128\""<<endl; | |
4910 | out << " sigs='HUP INT QUIT ILL TRAP ABRT BUS FPE"<<endl; | |
4911 | out << " KILL USR1 SEGV USR2 PIPE ALRM TERM STKFLT"<<endl; | |
4912 | out << " CHLD CONT STOP TSTP TTIN TTOU URG XCPU"<<endl; | |
4913 | out << " XFSZ VTALRM PROF WINCH IO PWR SYS'"<<endl; | |
4914 | out << " sig=SIG`echo $sigs | awk '{ print $'\"$sig\"' }'`"<<endl; | |
4915 | out << " echo \"======== it appears to have been killed with signal: $sig ========\""<<endl; | |
4916 | out << " fi"<<endl; | |
4917 | out << " exit $RET"<< endl; | |
4918 | out << "fi" << endl << endl ; | |
0f389141 | 4919 | out << "echo \"======== " << mergeMacro.Data() << " finished with exit code: $? ========\"" << endl; |
4920 | out << "echo \"############## memory after: ##############\"" << endl; | |
4921 | out << "free -m" << endl; | |
0f389141 | 4922 | } |
4923 | Bool_t copy = kTRUE; | |
d3b18c4c | 4924 | if (fProductionMode || TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; |
0f389141 | 4925 | if (copy) { |
4926 | CdWork(); | |
4927 | TString workdir = gGrid->GetHomeDirectory(); | |
0f389141 | 4928 | workdir += fGridWorkingDir; |
6da4839e | 4929 | TString executable = TString::Format("%s/%s", workdir.Data(), mergeExec.Data()); |
0f389141 | 4930 | if (FileExists(executable)) gGrid->Rm(executable); |
d3b18c4c | 4931 | Info("WriteMergeExecutable", "\n##### Copying executable file <%s> to your AliEn bin directory", mergeExec.Data()); |
6da4839e AG |
4932 | if (!copyLocal2Alien("WriteMergeExecutable",mergeExec.Data(), |
4933 | executable.Data())) Fatal("","Terminating"); | |
0f389141 | 4934 | } |
4935 | } | |
4936 | ||
c57f56b7 | 4937 | //______________________________________________________________________________ |
5513444a | 4938 | void AliAnalysisAlien::WriteProductionFile(const char *filename) const |
4939 | { | |
4940 | // Write the production file to be submitted by LPM manager. The format is: | |
f5e8c702 | 4941 | // First line: full_path_to_jdl estimated_no_subjobs_per_master |
5513444a | 4942 | // Next lines: full_path_to_dataset XXX (XXX is a string) |
4943 | // To submit, one has to: submit jdl XXX for all lines | |
4944 | ofstream out; | |
4945 | out.open(filename, ios::out); | |
4946 | if (out.bad()) { | |
4947 | Error("WriteProductionFile", "Bad file name: %s", filename); | |
4948 | return; | |
4949 | } | |
d3b18c4c | 4950 | TString workdir; |
4951 | if (!fProductionMode && !fGridWorkingDir.BeginsWith("/alice")) | |
4952 | workdir = gGrid->GetHomeDirectory(); | |
5513444a | 4953 | workdir += fGridWorkingDir; |
f5e8c702 | 4954 | Int_t njobspermaster = 1000*fNrunsPerMaster/fSplitMaxInputFileNumber; |
5513444a | 4955 | TString locjdl = Form("%s/%s", workdir.Data(),fJDLName.Data()); |
f5e8c702 | 4956 | out << locjdl << " " << njobspermaster << endl; |
5513444a | 4957 | Int_t nmasterjobs = fInputFiles->GetEntries(); |
4958 | for (Int_t i=0; i<nmasterjobs; i++) { | |
409b4ada | 4959 | TString runOutDir = gSystem->BaseName(fInputFiles->At(i)->GetName()); |
4960 | runOutDir.ReplaceAll(".xml", ""); | |
4961 | if (fOutputToRunNo) | |
4962 | out << Form("%s", fInputFiles->At(i)->GetName()) << " " << runOutDir << endl; | |
4963 | else | |
4964 | out << Form("%s", fInputFiles->At(i)->GetName()) << " " << Form("%03d", i) << endl; | |
5513444a | 4965 | } |
d3b18c4c | 4966 | if (gGrid) { |
4967 | Info("WriteProductionFile", "\n##### Copying production file <%s> to your work directory", filename); | |
4968 | if (FileExists(filename)) gGrid->Rm(filename); | |
6c395669 | 4969 | // TFile::Cp(Form("file:%s",filename), Form("alien://%s/%s", workdir.Data(),filename)); |
4970 | if (!copyLocal2Alien("WriteProductionFile", filename, | |
4971 | Form("%s/%s", workdir.Data(),filename))) Fatal("","Terminating"); | |
d3b18c4c | 4972 | } |
5513444a | 4973 | } |
4974 | ||
4975 | //______________________________________________________________________________ | |
0f389141 | 4976 | void AliAnalysisAlien::WriteValidationScript(Bool_t merge) |
c57f56b7 | 4977 | { |
4978 | // Generate the alien validation script. | |
4979 | // Generate the validation script | |
4980 | TObjString *os; | |
d3b18c4c | 4981 | if (fValidationScript.IsNull()) { |
4982 | fValidationScript = fExecutable; | |
4983 | fValidationScript.ReplaceAll(".sh", "_validation.sh"); | |
4984 | } | |
4985 | TString validationScript = fValidationScript; | |
4986 | if (merge) validationScript.ReplaceAll(".sh", "_merge.sh"); | |
c57f56b7 | 4987 | if (!Connect()) { |
4988 | Error("WriteValidationScript", "Alien connection required"); | |
4989 | return; | |
4990 | } | |
d3b18c4c | 4991 | if (!fTerminateFiles.IsNull()) { |
4992 | fTerminateFiles.Strip(); | |
4993 | fTerminateFiles.ReplaceAll(" ",","); | |
4994 | } | |
a2f5fc01 | 4995 | TString outStream = ""; |
4996 | if (!TestBit(AliAnalysisGrid::kTest)) outStream = " >> stdout"; | |
c57f56b7 | 4997 | if (!TestBit(AliAnalysisGrid::kSubmit)) { |
4998 | ofstream out; | |
0d5d317c | 4999 | out.open(validationScript, ios::out); |
c57f56b7 | 5000 | out << "#!/bin/bash" << endl; |
5001 | out << "##################################################" << endl; | |
5002 | out << "validateout=`dirname $0`" << endl; | |
5003 | out << "validatetime=`date`" << endl; | |
5004 | out << "validated=\"0\";" << endl; | |
5005 | out << "error=0" << endl; | |
5006 | out << "if [ -z $validateout ]" << endl; | |
5007 | out << "then" << endl; | |
5008 | out << " validateout=\".\"" << endl; | |
5009 | out << "fi" << endl << endl; | |
5010 | out << "cd $validateout;" << endl; | |
5011 | out << "validateworkdir=`pwd`;" << endl << endl; | |
a2f5fc01 | 5012 | out << "echo \"*******************************************************\"" << outStream << endl; |
5013 | out << "echo \"* Automatically generated validation script *\"" << outStream << endl; | |
c57f56b7 | 5014 | out << "" << endl; |
a2f5fc01 | 5015 | out << "echo \"* Time: $validatetime \"" << outStream << endl; |
5016 | out << "echo \"* Dir: $validateout\"" << outStream << endl; | |
5017 | out << "echo \"* Workdir: $validateworkdir\"" << outStream << endl; | |
5018 | out << "echo \"* ----------------------------------------------------*\"" << outStream << endl; | |
5019 | out << "ls -la ./" << outStream << endl; | |
5020 | out << "echo \"* ----------------------------------------------------*\"" << outStream << endl << endl; | |
c57f56b7 | 5021 | out << "##################################################" << endl; |
ebec370a | 5022 | out << "" << endl; |
5023 | ||
5024 | out << "if [ ! -f stderr ] ; then" << endl; | |
5025 | out << " error=1" << endl; | |
a2f5fc01 | 5026 | out << " echo \"* ########## Job not validated - no stderr ###\" " << outStream << endl; |
5027 | out << " echo \"Error = $error\" " << outStream << endl; | |
ebec370a | 5028 | out << "fi" << endl; |
5029 | ||
b34c9f51 | 5030 | out << "parArch=`grep -Ei \"Cannot Build the PAR Archive\" stderr`" << endl; |
5031 | out << "segViol=`grep -Ei \"Segmentation violation\" stderr`" << endl; | |
5032 | out << "segFault=`grep -Ei \"Segmentation fault\" stderr`" << endl; | |
5033 | out << "glibcErr=`grep -Ei \"*** glibc detected ***\" stderr`" << endl; | |
5034 | out << "" << endl; | |
5035 | ||
ebec370a | 5036 | out << "if [ \"$parArch\" != \"\" ] ; then" << endl; |
5037 | out << " error=1" << endl; | |
a2f5fc01 | 5038 | out << " echo \"* ########## Job not validated - PAR archive not built ###\" " << outStream << endl; |
5039 | out << " echo \"$parArch\" " << outStream << endl; | |
5040 | out << " echo \"Error = $error\" " << outStream << endl; | |
ebec370a | 5041 | out << "fi" << endl; |
5042 | ||
5043 | out << "if [ \"$segViol\" != \"\" ] ; then" << endl; | |
5044 | out << " error=1" << endl; | |
a2f5fc01 | 5045 | out << " echo \"* ########## Job not validated - Segment. violation ###\" " << outStream << endl; |
5046 | out << " echo \"$segViol\" " << outStream << endl; | |
5047 | out << " echo \"Error = $error\" " << outStream << endl; | |
ebec370a | 5048 | out << "fi" << endl; |
5049 | ||
5050 | out << "if [ \"$segFault\" != \"\" ] ; then" << endl; | |
5051 | out << " error=1" << endl; | |
a2f5fc01 | 5052 | out << " echo \"* ########## Job not validated - Segment. fault ###\" " << outStream << endl; |
5053 | out << " echo \"$segFault\" " << outStream << endl; | |
5054 | out << " echo \"Error = $error\" " << outStream << endl; | |
ebec370a | 5055 | out << "fi" << endl; |
5056 | ||
b34c9f51 | 5057 | out << "if [ \"$glibcErr\" != \"\" ] ; then" << endl; |
5058 | out << " error=1" << endl; | |
a2f5fc01 | 5059 | out << " echo \"* ########## Job not validated - *** glibc detected *** ###\" " << outStream << endl; |
5060 | out << " echo \"$glibcErr\" " << outStream << endl; | |
5061 | out << " echo \"Error = $error\" " << outStream << endl; | |
b34c9f51 | 5062 | out << "fi" << endl; |
5063 | ||
ebec370a | 5064 | // Part dedicated to the specific analyses running into the train |
5065 | ||
d3b18c4c | 5066 | TString outputFiles = fOutputFiles; |
5067 | if (merge && !fTerminateFiles.IsNull()) { | |
0c0825e4 | 5068 | if (!outputFiles.IsNull()) outputFiles += ","; |
d3b18c4c | 5069 | outputFiles += fTerminateFiles; |
5070 | } | |
5071 | TObjArray *arr = outputFiles.Tokenize(","); | |
c57f56b7 | 5072 | TIter next1(arr); |
a2f5fc01 | 5073 | TString outputFile; |
bbd88db8 | 5074 | while (!merge && (os=(TObjString*)next1())) { |
5075 | // No need to validate outputs produced by merging since the merging macro does this | |
a2f5fc01 | 5076 | outputFile = os->GetString(); |
5077 | Int_t index = outputFile.Index("@"); | |
5078 | if (index > 0) outputFile.Remove(index); | |
bbd88db8 | 5079 | if (fTerminateFiles.Contains(outputFile)) continue; |
a2f5fc01 | 5080 | if (outputFile.Contains("*")) continue; |
5081 | out << "if ! [ -f " << outputFile.Data() << " ] ; then" << endl; | |
c57f56b7 | 5082 | out << " error=1" << endl; |
7c2cd90a | 5083 | out << " echo \"Output file " << outputFile << " not found. Job FAILED !\"" << outStream << endl; |
5084 | out << " echo \"Output file " << outputFile << " not found. Job FAILED !\" >> stderr" << endl; | |
c57f56b7 | 5085 | out << "fi" << endl; |
5086 | } | |
5087 | delete arr; | |
7c2cd90a | 5088 | out << "if ! [ -f outputs_valid ] ; then" << endl; |
5089 | out << " error=1" << endl; | |
5090 | out << " echo \"Output files were not validated by the analysis manager\" >> stdout" << endl; | |
5091 | out << " echo \"Output files were not validated by the analysis manager\" >> stderr" << endl; | |
5092 | out << "fi" << endl; | |
923e2ca5 | 5093 | |
c57f56b7 | 5094 | out << "if [ $error = 0 ] ; then" << endl; |
a2f5fc01 | 5095 | out << " echo \"* ---------------- Job Validated ------------------*\"" << outStream << endl; |
149d288c | 5096 | if (!IsKeepLogs()) { |
5097 | out << " echo \"* === Logs std* will be deleted === \"" << endl; | |
a2f5fc01 | 5098 | outStream = ""; |
149d288c | 5099 | out << " rm -f std*" << endl; |
5100 | } | |
c57f56b7 | 5101 | out << "fi" << endl; |
5102 | ||
a2f5fc01 | 5103 | out << "echo \"* ----------------------------------------------------*\"" << outStream << endl; |
5104 | out << "echo \"*******************************************************\"" << outStream << endl; | |
c57f56b7 | 5105 | out << "cd -" << endl; |
5106 | out << "exit $error" << endl; | |
5107 | } | |
5108 | Bool_t copy = kTRUE; | |
d3b18c4c | 5109 | if (fProductionMode || TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; |
c57f56b7 | 5110 | if (copy) { |
5111 | CdWork(); | |
5112 | TString workdir = gGrid->GetHomeDirectory(); | |
5113 | workdir += fGridWorkingDir; | |
d3b18c4c | 5114 | Info("WriteValidationScript", "\n##### Copying validation script <%s> to your AliEn working space", validationScript.Data()); |
0d5d317c | 5115 | if (FileExists(validationScript)) gGrid->Rm(validationScript); |
6c395669 | 5116 | // TFile::Cp(Form("file:%s",validationScript.Data()), Form("alien://%s/%s", workdir.Data(),validationScript.Data())); |
5117 | if (!copyLocal2Alien("WriteValidationScript", validationScript.Data(), | |
5118 | Form("%s/%s",workdir.Data(), validationScript.Data()))) Fatal("","Terminating"); | |
c57f56b7 | 5119 | } |
5120 | } |