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c57f56b7 | 1 | /************************************************************************** |
2 | * Copyright(c) 1998-2007, ALICE Experiment at CERN, All rights reserved. * | |
3 | * * | |
4 | * Author: The ALICE Off-line Project. * | |
5 | * Contributors are mentioned in the code where appropriate. * | |
6 | * * | |
7 | * Permission to use, copy, modify and distribute this software and its * | |
8 | * documentation strictly for non-commercial purposes is hereby granted * | |
9 | * without fee, provided that the above copyright notice appears in all * | |
10 | * copies and that both the copyright notice and this permission notice * | |
11 | * appear in the supporting documentation. The authors make no claims * | |
12 | * about the suitability of this software for any purpose. It is * | |
13 | * provided "as is" without express or implied warranty. * | |
14 | **************************************************************************/ | |
15 | ||
16 | // Author: Mihaela Gheata, 01/09/2008 | |
17 | ||
18 | //============================================================================== | |
19 | // AliAnalysisAlien - AliEn utility class. Provides interface for creating | |
20 | // a personalized JDL, finding and creating a dataset. | |
21 | //============================================================================== | |
22 | ||
23 | #include "Riostream.h" | |
24 | #include "TROOT.h" | |
25 | #include "TSystem.h" | |
26 | #include "TFile.h" | |
27 | #include "TObjString.h" | |
28 | #include "TObjArray.h" | |
29 | #include "TGrid.h" | |
30 | #include "TGridResult.h" | |
31 | #include "TGridCollection.h" | |
32 | #include "TGridJDL.h" | |
d2a409b2 | 33 | #include "TGridJobStatusList.h" |
34 | #include "TGridJobStatus.h" | |
c57f56b7 | 35 | #include "TFileMerger.h" |
36 | #include "AliAnalysisManager.h" | |
bb885a9e | 37 | #include "AliVEventHandler.h" |
38 | #include "AliAnalysisDataContainer.h" | |
c57f56b7 | 39 | #include "AliAnalysisAlien.h" |
40 | ||
41 | ClassImp(AliAnalysisAlien) | |
42 | ||
43 | //______________________________________________________________________________ | |
44 | AliAnalysisAlien::AliAnalysisAlien() | |
45 | :AliAnalysisGrid(), | |
46 | fGridJDL(NULL), | |
47 | fPrice(0), | |
48 | fTTL(0), | |
49 | fSplitMaxInputFileNumber(0), | |
50 | fMaxInitFailed(0), | |
51 | fMasterResubmitThreshold(0), | |
bb885a9e | 52 | fNtestFiles(0), |
319593fb | 53 | fNrunsPerMaster(0), |
16a4353c | 54 | fMaxMergeFiles(0), |
d2a409b2 | 55 | fNsubmitted(0), |
a3e84053 | 56 | fProductionMode(0), |
c57f56b7 | 57 | fRunNumbers(), |
58 | fExecutable(), | |
59 | fArguments(), | |
60 | fAnalysisMacro(), | |
61 | fAnalysisSource(), | |
62 | fAdditionalLibs(), | |
63 | fSplitMode(), | |
64 | fAPIVersion(), | |
65 | fROOTVersion(), | |
66 | fAliROOTVersion(), | |
67 | fUser(), | |
68 | fGridWorkingDir(), | |
69 | fGridDataDir(), | |
70 | fDataPattern(), | |
71 | fGridOutputDir(), | |
72 | fOutputArchive(), | |
73 | fOutputFiles(), | |
74 | fInputFormat(), | |
e7c71df0 | 75 | fDatasetName(), |
c57f56b7 | 76 | fJDLName(), |
bb885a9e | 77 | fMergeExcludes(), |
f965131e | 78 | fIncludePath(), |
bb885a9e | 79 | fCloseSE(), |
0df6ccf2 | 80 | fFriendChainName(), |
c6cb3634 | 81 | fJobTag(), |
4e5c5506 | 82 | fInputFiles(0), |
83 | fPackages(0) | |
c57f56b7 | 84 | { |
85 | // Dummy ctor. | |
86 | SetDefaults(); | |
87 | } | |
88 | ||
89 | //______________________________________________________________________________ | |
90 | AliAnalysisAlien::AliAnalysisAlien(const char *name) | |
91 | :AliAnalysisGrid(name), | |
92 | fGridJDL(NULL), | |
93 | fPrice(0), | |
94 | fTTL(0), | |
95 | fSplitMaxInputFileNumber(0), | |
96 | fMaxInitFailed(0), | |
97 | fMasterResubmitThreshold(0), | |
bb885a9e | 98 | fNtestFiles(0), |
319593fb | 99 | fNrunsPerMaster(0), |
16a4353c | 100 | fMaxMergeFiles(0), |
d2a409b2 | 101 | fNsubmitted(0), |
a3e84053 | 102 | fProductionMode(0), |
c57f56b7 | 103 | fRunNumbers(), |
104 | fExecutable(), | |
105 | fArguments(), | |
106 | fAnalysisMacro(), | |
107 | fAnalysisSource(), | |
108 | fAdditionalLibs(), | |
109 | fSplitMode(), | |
110 | fAPIVersion(), | |
111 | fROOTVersion(), | |
112 | fAliROOTVersion(), | |
113 | fUser(), | |
114 | fGridWorkingDir(), | |
115 | fGridDataDir(), | |
116 | fDataPattern(), | |
117 | fGridOutputDir(), | |
118 | fOutputArchive(), | |
119 | fOutputFiles(), | |
120 | fInputFormat(), | |
e7c71df0 | 121 | fDatasetName(), |
c57f56b7 | 122 | fJDLName(), |
bb885a9e | 123 | fMergeExcludes(), |
f965131e | 124 | fIncludePath(), |
bb885a9e | 125 | fCloseSE(), |
0df6ccf2 | 126 | fFriendChainName(), |
c6cb3634 | 127 | fJobTag(), |
4e5c5506 | 128 | fInputFiles(0), |
129 | fPackages(0) | |
c57f56b7 | 130 | { |
131 | // Default ctor. | |
132 | SetDefaults(); | |
133 | } | |
134 | ||
135 | //______________________________________________________________________________ | |
136 | AliAnalysisAlien::AliAnalysisAlien(const AliAnalysisAlien& other) | |
137 | :AliAnalysisGrid(other), | |
138 | fGridJDL(NULL), | |
139 | fPrice(other.fPrice), | |
140 | fTTL(other.fTTL), | |
141 | fSplitMaxInputFileNumber(other.fSplitMaxInputFileNumber), | |
142 | fMaxInitFailed(other.fMaxInitFailed), | |
143 | fMasterResubmitThreshold(other.fMasterResubmitThreshold), | |
bb885a9e | 144 | fNtestFiles(other.fNtestFiles), |
319593fb | 145 | fNrunsPerMaster(other.fNrunsPerMaster), |
16a4353c | 146 | fMaxMergeFiles(other.fMaxMergeFiles), |
d2a409b2 | 147 | fNsubmitted(other.fNsubmitted), |
a3e84053 | 148 | fProductionMode(other.fProductionMode), |
c57f56b7 | 149 | fRunNumbers(other.fRunNumbers), |
150 | fExecutable(other.fExecutable), | |
151 | fArguments(other.fArguments), | |
152 | fAnalysisMacro(other.fAnalysisMacro), | |
153 | fAnalysisSource(other.fAnalysisSource), | |
154 | fAdditionalLibs(other.fAdditionalLibs), | |
155 | fSplitMode(other.fSplitMode), | |
156 | fAPIVersion(other.fAPIVersion), | |
157 | fROOTVersion(other.fROOTVersion), | |
158 | fAliROOTVersion(other.fAliROOTVersion), | |
159 | fUser(other.fUser), | |
160 | fGridWorkingDir(other.fGridWorkingDir), | |
161 | fGridDataDir(other.fGridDataDir), | |
162 | fDataPattern(other.fDataPattern), | |
163 | fGridOutputDir(other.fGridOutputDir), | |
164 | fOutputArchive(other.fOutputArchive), | |
165 | fOutputFiles(other.fOutputFiles), | |
166 | fInputFormat(other.fInputFormat), | |
e7c71df0 | 167 | fDatasetName(other.fDatasetName), |
c57f56b7 | 168 | fJDLName(other.fJDLName), |
bb885a9e | 169 | fMergeExcludes(other.fMergeExcludes), |
f965131e | 170 | fIncludePath(other.fIncludePath), |
bb885a9e | 171 | fCloseSE(other.fCloseSE), |
0df6ccf2 | 172 | fFriendChainName(other.fFriendChainName), |
c6cb3634 | 173 | fJobTag(other.fJobTag), |
4e5c5506 | 174 | fInputFiles(0), |
175 | fPackages(0) | |
c57f56b7 | 176 | { |
177 | // Copy ctor. | |
178 | fGridJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); | |
a8739e8a | 179 | fRunRange[0] = other.fRunRange[0]; |
180 | fRunRange[1] = other.fRunRange[1]; | |
c57f56b7 | 181 | if (other.fInputFiles) { |
182 | fInputFiles = new TObjArray(); | |
183 | TIter next(other.fInputFiles); | |
184 | TObject *obj; | |
185 | while ((obj=next())) fInputFiles->Add(new TObjString(obj->GetName())); | |
186 | fInputFiles->SetOwner(); | |
187 | } | |
4e5c5506 | 188 | if (other.fPackages) { |
189 | fPackages = new TObjArray(); | |
190 | TIter next(other.fPackages); | |
191 | TObject *obj; | |
192 | while ((obj=next())) fPackages->Add(new TObjString(obj->GetName())); | |
193 | fPackages->SetOwner(); | |
194 | } | |
c57f56b7 | 195 | } |
196 | ||
197 | //______________________________________________________________________________ | |
198 | AliAnalysisAlien::~AliAnalysisAlien() | |
199 | { | |
200 | // Destructor. | |
201 | if (fGridJDL) delete fGridJDL; | |
202 | if (fInputFiles) delete fInputFiles; | |
4e5c5506 | 203 | if (fPackages) delete fPackages; |
c57f56b7 | 204 | } |
205 | ||
206 | //______________________________________________________________________________ | |
207 | AliAnalysisAlien &AliAnalysisAlien::operator=(const AliAnalysisAlien& other) | |
208 | { | |
209 | // Assignment. | |
210 | if (this != &other) { | |
211 | AliAnalysisGrid::operator=(other); | |
212 | fGridJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); | |
213 | fPrice = other.fPrice; | |
214 | fTTL = other.fTTL; | |
215 | fSplitMaxInputFileNumber = other.fSplitMaxInputFileNumber; | |
216 | fMaxInitFailed = other.fMaxInitFailed; | |
217 | fMasterResubmitThreshold = other.fMasterResubmitThreshold; | |
bb885a9e | 218 | fNtestFiles = other.fNtestFiles; |
a3e84053 | 219 | fNrunsPerMaster = other.fNrunsPerMaster; |
220 | fMaxMergeFiles = other.fMaxMergeFiles; | |
221 | fNsubmitted = other.fNsubmitted; | |
222 | fProductionMode = other.fProductionMode; | |
c57f56b7 | 223 | fRunNumbers = other.fRunNumbers; |
224 | fExecutable = other.fExecutable; | |
225 | fArguments = other.fArguments; | |
226 | fAnalysisMacro = other.fAnalysisMacro; | |
227 | fAnalysisSource = other.fAnalysisSource; | |
228 | fAdditionalLibs = other.fAdditionalLibs; | |
229 | fSplitMode = other.fSplitMode; | |
230 | fAPIVersion = other.fAPIVersion; | |
231 | fROOTVersion = other.fROOTVersion; | |
232 | fAliROOTVersion = other.fAliROOTVersion; | |
233 | fUser = other.fUser; | |
234 | fGridWorkingDir = other.fGridWorkingDir; | |
235 | fGridDataDir = other.fGridDataDir; | |
236 | fDataPattern = other.fDataPattern; | |
237 | fGridOutputDir = other.fGridOutputDir; | |
238 | fOutputArchive = other.fOutputArchive; | |
239 | fOutputFiles = other.fOutputFiles; | |
240 | fInputFormat = other.fInputFormat; | |
e7c71df0 | 241 | fDatasetName = other.fDatasetName; |
c57f56b7 | 242 | fJDLName = other.fJDLName; |
bb885a9e | 243 | fMergeExcludes = other.fMergeExcludes; |
f965131e | 244 | fIncludePath = other.fIncludePath; |
bb885a9e | 245 | fCloseSE = other.fCloseSE; |
0df6ccf2 | 246 | fFriendChainName = other.fFriendChainName; |
c6cb3634 | 247 | fJobTag = other.fJobTag; |
c57f56b7 | 248 | if (other.fInputFiles) { |
249 | fInputFiles = new TObjArray(); | |
250 | TIter next(other.fInputFiles); | |
251 | TObject *obj; | |
252 | while ((obj=next())) fInputFiles->Add(new TObjString(obj->GetName())); | |
253 | fInputFiles->SetOwner(); | |
254 | } | |
4e5c5506 | 255 | if (other.fPackages) { |
256 | fPackages = new TObjArray(); | |
257 | TIter next(other.fPackages); | |
258 | TObject *obj; | |
259 | while ((obj=next())) fPackages->Add(new TObjString(obj->GetName())); | |
260 | fPackages->SetOwner(); | |
261 | } | |
c57f56b7 | 262 | } |
263 | return *this; | |
264 | } | |
265 | ||
f965131e | 266 | //______________________________________________________________________________ |
267 | void AliAnalysisAlien::AddIncludePath(const char *path) | |
268 | { | |
269 | // Add include path in the remote analysis macro. | |
270 | TString p(path); | |
271 | if (p.Contains("-I")) fIncludePath += Form("%s ", path); | |
272 | else fIncludePath += Form("-I%s ", path); | |
273 | } | |
274 | ||
c57f56b7 | 275 | //______________________________________________________________________________ |
276 | void AliAnalysisAlien::AddRunNumber(Int_t run) | |
277 | { | |
278 | // Add a run number to the list of runs to be processed. | |
279 | if (fRunNumbers.Length()) fRunNumbers += " "; | |
280 | fRunNumbers += Form("%d", run); | |
281 | } | |
282 | ||
ee75cfc3 | 283 | //______________________________________________________________________________ |
284 | void AliAnalysisAlien::AddRunNumber(const char* run) | |
285 | { | |
286 | // Add a run number to the list of runs to be processed. | |
287 | if (fRunNumbers.Length()) fRunNumbers += " "; | |
288 | fRunNumbers += run; | |
289 | } | |
290 | ||
c57f56b7 | 291 | //______________________________________________________________________________ |
292 | void AliAnalysisAlien::AddDataFile(const char *lfn) | |
293 | { | |
294 | // Adds a data file to the input to be analysed. The file should be a valid LFN | |
295 | // or point to an existing file in the alien workdir. | |
296 | if (!fInputFiles) fInputFiles = new TObjArray(); | |
297 | fInputFiles->Add(new TObjString(lfn)); | |
298 | } | |
299 | ||
300 | //______________________________________________________________________________ | |
301 | Bool_t AliAnalysisAlien::Connect() | |
302 | { | |
303 | // Try to connect to AliEn. User needs a valid token and /tmp/gclient_env_$UID sourced. | |
304 | if (gGrid && gGrid->IsConnected()) return kTRUE; | |
305 | if (!gSystem->Getenv("alien_API_USER")) { | |
306 | Error("Connect", "Make sure you:\n 1. Have called: alien-token-init <username> today\n 2. Have sourced /tmp/gclient_env_%s", | |
307 | gSystem->Getenv("UID")); | |
308 | return kFALSE; | |
309 | } | |
310 | if (!gGrid) { | |
311 | Info("Connect", "Trying to connect to AliEn ..."); | |
312 | TGrid::Connect("alien://"); | |
313 | } | |
314 | if (!gGrid || !gGrid->IsConnected()) { | |
315 | Error("Connect", "Did not managed to connect to AliEn. Make sure you have a valid token."); | |
316 | return kFALSE; | |
317 | } | |
318 | fUser = gGrid->GetUser(); | |
319 | Info("Connect", "\n##### Connected to AliEn as user %s. Setting analysis user to <%s>", fUser.Data(), fUser.Data()); | |
320 | return kTRUE; | |
321 | } | |
322 | ||
323 | //______________________________________________________________________________ | |
324 | void AliAnalysisAlien::CdWork() | |
325 | { | |
326 | // Check validity of alien workspace. Create directory if possible. | |
327 | if (!Connect()) { | |
328 | Error("CdWork", "Alien connection required"); | |
329 | return; | |
330 | } | |
331 | TString homedir = gGrid->GetHomeDirectory(); | |
332 | TString workdir = homedir + fGridWorkingDir; | |
923e2ca5 | 333 | if (DirectoryExists(workdir)) { |
334 | gGrid->Cd(workdir); | |
335 | return; | |
336 | } | |
337 | // Work directory not existing - create it | |
338 | gGrid->Cd(homedir); | |
339 | if (gGrid->Mkdir(workdir)) { | |
340 | gGrid->Cd(fGridWorkingDir); | |
341 | Info("CreateJDL", "\n##### Created alien working directory %s", fGridWorkingDir.Data()); | |
342 | } else { | |
343 | Warning("CreateJDL", "Working directory %s cannot be created.\n Using %s instead.", | |
344 | workdir.Data(), homedir.Data()); | |
345 | fGridWorkingDir = ""; | |
346 | } | |
c57f56b7 | 347 | } |
348 | ||
349 | //______________________________________________________________________________ | |
350 | Bool_t AliAnalysisAlien::CheckInputData() | |
351 | { | |
352 | // Check validity of input data. If necessary, create xml files. | |
a8739e8a | 353 | if (!fInputFiles && !fRunNumbers.Length() && !fRunRange[0]) { |
d2a409b2 | 354 | if (!fGridDataDir.Length()) { |
355 | Error("CkeckInputData", "AliEn path to base data directory must be set.\n = Use: SetGridDataDir()"); | |
356 | return kFALSE; | |
357 | } | |
358 | Info("CheckInputData", "Analysis will make a single xml for base data directory %s",fGridDataDir.Data()); | |
359 | return kTRUE; | |
c57f56b7 | 360 | } |
361 | // Process declared files | |
362 | Bool_t is_collection = kFALSE; | |
363 | Bool_t is_xml = kFALSE; | |
364 | Bool_t use_tags = kFALSE; | |
365 | Bool_t checked = kFALSE; | |
366 | CdWork(); | |
367 | TString file; | |
368 | TString workdir = gGrid->GetHomeDirectory(); | |
369 | workdir += fGridWorkingDir; | |
370 | if (fInputFiles) { | |
371 | TObjString *objstr; | |
372 | TIter next(fInputFiles); | |
373 | while ((objstr=(TObjString*)next())) { | |
374 | file = workdir; | |
375 | file += "/"; | |
376 | file += objstr->GetString(); | |
377 | // Store full lfn path | |
378 | if (FileExists(file)) objstr->SetString(file); | |
379 | else { | |
380 | file = objstr->GetName(); | |
381 | if (!FileExists(objstr->GetName())) { | |
382 | Error("CheckInputData", "Data file %s not found or not in your working dir: %s", | |
383 | objstr->GetName(), workdir.Data()); | |
384 | return kFALSE; | |
385 | } | |
386 | } | |
387 | Bool_t iscoll, isxml, usetags; | |
388 | CheckDataType(file, iscoll, isxml, usetags); | |
389 | if (!checked) { | |
390 | checked = kTRUE; | |
391 | is_collection = iscoll; | |
392 | is_xml = isxml; | |
393 | use_tags = usetags; | |
394 | TObject::SetBit(AliAnalysisGrid::kUseTags, use_tags); | |
395 | } else { | |
396 | if ((iscoll != is_collection) || (isxml != is_xml) || (usetags != use_tags)) { | |
397 | Error("CheckInputData", "Some conflict was found in the types of inputs"); | |
398 | return kFALSE; | |
399 | } | |
400 | } | |
401 | } | |
402 | } | |
403 | // Process requested run numbers | |
a8739e8a | 404 | if (!fRunNumbers.Length() && !fRunRange[0]) return kTRUE; |
c57f56b7 | 405 | // Check validity of alien data directory |
406 | if (!fGridDataDir.Length()) { | |
407 | Error("CkeckInputData", "AliEn path to base data directory must be set.\n = Use: SetGridDataDir()"); | |
408 | return kFALSE; | |
409 | } | |
923e2ca5 | 410 | if (!DirectoryExists(fGridDataDir)) { |
c57f56b7 | 411 | Error("CheckInputData", "Data directory %s not existing.", fGridDataDir.Data()); |
412 | return kFALSE; | |
413 | } | |
414 | if (is_collection) { | |
415 | Error("CheckInputData", "You are using raw AliEn collections as input. Cannot process run numbers."); | |
416 | return kFALSE; | |
417 | } | |
418 | ||
419 | if (checked && !is_xml) { | |
420 | Error("CheckInputData", "Cannot mix processing of full runs with non-xml files"); | |
421 | return kFALSE; | |
422 | } | |
423 | // Check validity of run number(s) | |
424 | TObjArray *arr; | |
425 | TObjString *os; | |
319593fb | 426 | Int_t nruns = 0; |
427 | TString schunk; | |
c57f56b7 | 428 | TString path; |
429 | if (!checked) { | |
430 | checked = kTRUE; | |
431 | use_tags = fDataPattern.Contains("tag"); | |
432 | TObject::SetBit(AliAnalysisGrid::kUseTags, use_tags); | |
433 | } | |
434 | if (use_tags != fDataPattern.Contains("tag")) { | |
435 | Error("CheckInputData", "Cannot mix input files using/not using tags"); | |
436 | return kFALSE; | |
437 | } | |
438 | if (fRunNumbers.Length()) { | |
a8739e8a | 439 | Info("CheckDataType", "Using supplied run numbers (run ranges are ignored)"); |
c57f56b7 | 440 | arr = fRunNumbers.Tokenize(" "); |
441 | TIter next(arr); | |
442 | while ((os=(TObjString*)next())) { | |
443 | path = Form("%s/%s ", fGridDataDir.Data(), os->GetString().Data()); | |
923e2ca5 | 444 | if (!DirectoryExists(path)) { |
445 | Warning("CheckInputData", "Run number %s not found in path: <%s>", os->GetString().Data(), path.Data()); | |
a8739e8a | 446 | continue; |
c57f56b7 | 447 | } |
448 | path = Form("%s/%s.xml", workdir.Data(),os->GetString().Data()); | |
449 | TString msg = "\n##### file: "; | |
450 | msg += path; | |
451 | msg += " type: xml_collection;"; | |
452 | if (use_tags) msg += " using_tags: Yes"; | |
453 | else msg += " using_tags: No"; | |
454 | Info("CheckDataType", msg.Data()); | |
319593fb | 455 | if (fNrunsPerMaster<2) { |
d2a409b2 | 456 | AddDataFile(Form("%s.xml", os->GetString().Data())); |
319593fb | 457 | } else { |
458 | nruns++; | |
459 | if (((nruns-1)%fNrunsPerMaster) == 0) { | |
460 | schunk = os->GetString(); | |
461 | } | |
462 | if ((nruns%fNrunsPerMaster)!=0 && os!=arr->Last()) continue; | |
463 | schunk += Form("_%s.xml", os->GetString().Data()); | |
d2a409b2 | 464 | AddDataFile(schunk); |
319593fb | 465 | } |
c57f56b7 | 466 | } |
467 | delete arr; | |
a8739e8a | 468 | } else { |
469 | Info("CheckDataType", "Using run range [%d, %d]", fRunRange[0], fRunRange[1]); | |
470 | for (Int_t irun=fRunRange[0]; irun<=fRunRange[1]; irun++) { | |
471 | path = Form("%s/%d ", fGridDataDir.Data(), irun); | |
923e2ca5 | 472 | if (!DirectoryExists(path)) { |
473 | // Warning("CheckInputData", "Run number %d not found in path: <%s>", irun, path.Data()); | |
a8739e8a | 474 | continue; |
475 | } | |
476 | path = Form("%s/%d.xml", workdir.Data(),irun); | |
477 | TString msg = "\n##### file: "; | |
478 | msg += path; | |
479 | msg += " type: xml_collection;"; | |
480 | if (use_tags) msg += " using_tags: Yes"; | |
481 | else msg += " using_tags: No"; | |
482 | Info("CheckDataType", msg.Data()); | |
319593fb | 483 | if (fNrunsPerMaster<2) { |
d2a409b2 | 484 | AddDataFile(Form("%d.xml",irun)); |
319593fb | 485 | } else { |
486 | nruns++; | |
487 | if (((nruns-1)%fNrunsPerMaster) == 0) { | |
488 | schunk = Form("%d", irun); | |
489 | } | |
490 | if ((nruns%fNrunsPerMaster)!=0 && irun != fRunRange[1]) continue; | |
491 | schunk += Form("_%d.xml", irun); | |
d2a409b2 | 492 | AddDataFile(schunk); |
319593fb | 493 | } |
a8739e8a | 494 | } |
c57f56b7 | 495 | } |
496 | return kTRUE; | |
497 | } | |
498 | ||
499 | //______________________________________________________________________________ | |
500 | Bool_t AliAnalysisAlien::CreateDataset(const char *pattern) | |
501 | { | |
502 | // Create dataset for the grid data directory + run number. | |
503 | if (TestBit(AliAnalysisGrid::kOffline)) return kFALSE; | |
504 | if (!Connect()) { | |
505 | Error("CreateDataset", "Cannot create dataset with no grid connection"); | |
506 | return kFALSE; | |
507 | } | |
508 | ||
509 | // Cd workspace | |
510 | CdWork(); | |
511 | TString workdir = gGrid->GetHomeDirectory(); | |
512 | workdir += fGridWorkingDir; | |
513 | ||
514 | // Compose the 'find' command arguments | |
515 | TString command; | |
516 | TString options = "-x collection "; | |
bb885a9e | 517 | if (TestBit(AliAnalysisGrid::kTest)) options += Form("-l %d ", fNtestFiles); |
c57f56b7 | 518 | TString conditions = ""; |
519 | ||
520 | TString file; | |
521 | TString path; | |
319593fb | 522 | Int_t nruns = 0; |
523 | TString schunk; | |
ab254fd1 | 524 | TGridCollection *cbase=0, *cadd=0; |
d2a409b2 | 525 | if (!fRunNumbers.Length() && !fRunRange[0]) { |
526 | if (fInputFiles && fInputFiles->GetEntries()) return kTRUE; | |
527 | // Make a single data collection from data directory. | |
528 | path = fGridDataDir; | |
923e2ca5 | 529 | if (!DirectoryExists(path)) { |
d2a409b2 | 530 | Error("CreateDataset", "Path to data directory %s not valid",fGridDataDir.Data()); |
531 | return kFALSE; | |
532 | } | |
923e2ca5 | 533 | // CdWork(); |
d2a409b2 | 534 | if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml"; |
535 | else file = Form("%s.xml", gSystem->BaseName(path)); | |
536 | if (gSystem->AccessPathName(file)) { | |
537 | command = "find "; | |
538 | command += options; | |
539 | command += path; | |
540 | command += " "; | |
541 | command += pattern; | |
542 | command += conditions; | |
923e2ca5 | 543 | Printf("command: %s", command.Data()); |
d2a409b2 | 544 | TGridResult *res = gGrid->Command(command); |
545 | if (res) delete res; | |
546 | // Write standard output to file | |
547 | gROOT->ProcessLine(Form("gGrid->Stdout(); > %s", file.Data())); | |
548 | } | |
549 | if (!TestBit(AliAnalysisGrid::kTest) && !FileExists(file)) { | |
550 | // Copy xml file to alien space | |
551 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); | |
552 | if (!FileExists(file)) { | |
553 | Error("CreateDataset", "Command %s did NOT succeed", command.Data()); | |
554 | return kFALSE; | |
555 | } | |
556 | // Update list of files to be processed. | |
557 | } | |
558 | AddDataFile(Form("%s/%s", workdir.Data(), file.Data())); | |
559 | return kTRUE; | |
560 | } | |
c57f56b7 | 561 | // Several runs |
a8739e8a | 562 | if (fRunNumbers.Length()) { |
563 | TObjArray *arr = fRunNumbers.Tokenize(" "); | |
564 | TObjString *os; | |
565 | TIter next(arr); | |
566 | while ((os=(TObjString*)next())) { | |
567 | path = Form("%s/%s ", fGridDataDir.Data(), os->GetString().Data()); | |
923e2ca5 | 568 | if (!DirectoryExists(path)) continue; |
569 | // CdWork(); | |
a8739e8a | 570 | if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml"; |
571 | else file = Form("%s.xml", os->GetString().Data()); | |
319593fb | 572 | // If local collection file does not exist, create it via 'find' command. |
573 | if (gSystem->AccessPathName(file)) { | |
574 | command = "find "; | |
575 | command += options; | |
576 | command += path; | |
577 | command += pattern; | |
578 | command += conditions; | |
579 | TGridResult *res = gGrid->Command(command); | |
580 | if (res) delete res; | |
581 | // Write standard output to file | |
582 | gROOT->ProcessLine(Form("gGrid->Stdout(); > %s", file.Data())); | |
583 | } | |
a8739e8a | 584 | if (TestBit(AliAnalysisGrid::kTest)) break; |
319593fb | 585 | // Check if there is one run per master job. |
586 | if (fNrunsPerMaster<2) { | |
587 | if (FileExists(file)) { | |
588 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", file.Data()); | |
589 | continue; | |
590 | } | |
591 | // Copy xml file to alien space | |
592 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); | |
593 | if (!FileExists(file)) { | |
594 | Error("CreateDataset", "Command %s did NOT succeed", command.Data()); | |
595 | delete arr; | |
596 | return kFALSE; | |
597 | } | |
598 | } else { | |
599 | nruns++; | |
600 | if (((nruns-1)%fNrunsPerMaster) == 0) { | |
601 | schunk = os->GetString(); | |
602 | cbase = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
603 | } else { | |
604 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
923e2ca5 | 605 | Printf(" Merging collection <%s> into masterjob input...", file.Data()); |
319593fb | 606 | cbase->Add(cadd); |
607 | delete cadd; | |
608 | } | |
609 | if ((nruns%fNrunsPerMaster)!=0 && os!=arr->Last()) { | |
610 | continue; | |
611 | } | |
612 | schunk += Form("_%s.xml", os->GetString().Data()); | |
613 | if (FileExists(schunk)) { | |
614 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", schunk.Data()); | |
615 | continue; | |
616 | } | |
923e2ca5 | 617 | Printf("Exporting merged collection <%s> and copying to AliEn.", schunk.Data()); |
319593fb | 618 | cbase->ExportXML(Form("file://%s", schunk.Data()),kFALSE,kFALSE, schunk, "Merged runs"); |
619 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); | |
620 | if (!FileExists(schunk)) { | |
621 | Error("CreateDataset", "Copy command did NOT succeed for %s", schunk.Data()); | |
622 | delete arr; | |
623 | return kFALSE; | |
624 | } | |
625 | } | |
a8739e8a | 626 | } |
627 | delete arr; | |
628 | } else { | |
629 | // Process a full run range. | |
630 | for (Int_t irun=fRunRange[0]; irun<=fRunRange[1]; irun++) { | |
631 | path = Form("%s/%d ", fGridDataDir.Data(), irun); | |
923e2ca5 | 632 | if (!DirectoryExists(path)) continue; |
633 | // CdWork(); | |
a8739e8a | 634 | if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml"; |
635 | else file = Form("%d.xml", irun); | |
319593fb | 636 | if (FileExists(file) && fNrunsPerMaster<2 && !TestBit(AliAnalysisGrid::kTest)) { |
a8739e8a | 637 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", file.Data()); |
638 | // gGrid->Rm(file); | |
639 | continue; | |
640 | } | |
319593fb | 641 | // If local collection file does not exist, create it via 'find' command. |
642 | if (gSystem->AccessPathName(file)) { | |
643 | command = "find "; | |
644 | command += options; | |
645 | command += path; | |
646 | command += pattern; | |
647 | command += conditions; | |
648 | TGridResult *res = gGrid->Command(command); | |
649 | if (res) delete res; | |
650 | // Write standard output to file | |
651 | gROOT->ProcessLine(Form("gGrid->Stdout(); > %s", file.Data())); | |
652 | } | |
a8739e8a | 653 | if (TestBit(AliAnalysisGrid::kTest)) break; |
319593fb | 654 | // Check if there is one run per master job. |
655 | if (fNrunsPerMaster<2) { | |
656 | if (FileExists(file)) { | |
657 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", file.Data()); | |
658 | continue; | |
659 | } | |
660 | // Copy xml file to alien space | |
661 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); | |
662 | if (!FileExists(file)) { | |
663 | Error("CreateDataset", "Command %s did NOT succeed", command.Data()); | |
664 | return kFALSE; | |
665 | } | |
666 | } else { | |
667 | nruns++; | |
95e5b448 | 668 | // Check if the collection for the chunk exist locally. |
669 | Int_t nchunk = (nruns-1)/fNrunsPerMaster; | |
670 | if (FileExists(fInputFiles->At(nchunk)->GetName())) continue; | |
923e2ca5 | 671 | Printf(" Merging collection <%s> into %d runs chunk...",file.Data(),fNrunsPerMaster); |
319593fb | 672 | if (((nruns-1)%fNrunsPerMaster) == 0) { |
673 | schunk = Form("%d", irun); | |
674 | cbase = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
675 | } else { | |
676 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
677 | cbase->Add(cadd); | |
678 | delete cadd; | |
679 | } | |
680 | if ((nruns%fNrunsPerMaster)!=0 && irun!=fRunRange[1]) { | |
681 | continue; | |
682 | } | |
683 | schunk += Form("_%d.xml", irun); | |
684 | if (FileExists(schunk)) { | |
685 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", schunk.Data()); | |
686 | continue; | |
687 | } | |
923e2ca5 | 688 | Printf("Exporting merged collection <%s> and copying to AliEn.", schunk.Data()); |
319593fb | 689 | cbase->ExportXML(Form("file://%s", schunk.Data()),kFALSE,kFALSE, schunk, "Merged runs"); |
95e5b448 | 690 | if (FileExists(schunk)) { |
691 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping copy...", schunk.Data()); | |
692 | continue; | |
693 | } | |
319593fb | 694 | TFile::Cp(Form("file:%s",schunk.Data()), Form("alien://%s/%s",workdir.Data(), schunk.Data())); |
695 | if (!FileExists(schunk)) { | |
696 | Error("CreateDataset", "Copy command did NOT succeed for %s", schunk.Data()); | |
697 | return kFALSE; | |
698 | } | |
699 | } | |
c57f56b7 | 700 | } |
a8739e8a | 701 | } |
c57f56b7 | 702 | return kTRUE; |
703 | } | |
704 | ||
705 | //______________________________________________________________________________ | |
706 | Bool_t AliAnalysisAlien::CreateJDL() | |
707 | { | |
708 | // Generate a JDL file according to current settings. The name of the file is | |
709 | // specified by fJDLName. | |
710 | Bool_t error = kFALSE; | |
711 | TObjArray *arr = 0; | |
712 | Bool_t copy = kTRUE; | |
713 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
714 | Bool_t generate = kTRUE; | |
715 | if (TestBit(AliAnalysisGrid::kTest) || TestBit(AliAnalysisGrid::kSubmit)) generate = kFALSE; | |
716 | if (!Connect()) { | |
717 | Error("CreateJDL", "Alien connection required"); | |
718 | return kFALSE; | |
719 | } | |
720 | // Check validity of alien workspace | |
721 | CdWork(); | |
722 | TString workdir = gGrid->GetHomeDirectory(); | |
723 | workdir += fGridWorkingDir; | |
724 | if (generate) { | |
725 | TObjString *os; | |
726 | if (!fInputFiles) { | |
727 | Error("CreateJDL()", "Define some input files for your analysis."); | |
728 | error = kTRUE; | |
729 | } | |
730 | // Compose list of input files | |
731 | // Check if output files were defined | |
732 | if (!fOutputFiles.Length()) { | |
733 | Error("CreateJDL", "You must define at least one output file"); | |
734 | error = kTRUE; | |
735 | } | |
736 | // Check if an output directory was defined and valid | |
737 | if (!fGridOutputDir.Length()) { | |
738 | Error("CreateJDL", "You must define AliEn output directory"); | |
739 | error = kTRUE; | |
740 | } else { | |
d2a409b2 | 741 | if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("%s/%s", workdir.Data(), fGridOutputDir.Data()); |
923e2ca5 | 742 | if (!DirectoryExists(fGridOutputDir)) { |
c57f56b7 | 743 | if (gGrid->Mkdir(fGridOutputDir)) { |
744 | Info("CreateJDL", "\n##### Created alien output directory %s", fGridOutputDir.Data()); | |
745 | } else { | |
746 | Error("CreateJDL", "Could not create alien output directory %s", fGridOutputDir.Data()); | |
5513444a | 747 | // error = kTRUE; |
c57f56b7 | 748 | } |
749 | } | |
750 | gGrid->Cd(workdir); | |
751 | } | |
752 | // Exit if any error up to now | |
753 | if (error) return kFALSE; | |
754 | // Set JDL fields | |
755 | fGridJDL->SetValue("User", Form("\"%s\"", fUser.Data())); | |
3c639fc4 | 756 | fGridJDL->SetExecutable(fExecutable); |
c57f56b7 | 757 | // fGridJDL->SetTTL((UInt_t)fTTL); |
758 | fGridJDL->SetValue("TTL", Form("\"%d\"", fTTL)); | |
759 | if (fMaxInitFailed > 0) | |
760 | fGridJDL->SetValue("MaxInitFailed", Form("\"%d\"",fMaxInitFailed)); | |
761 | if (fSplitMaxInputFileNumber > 0) | |
762 | fGridJDL->SetValue("SplitMaxInputFileNumber", Form("\"%d\"", fSplitMaxInputFileNumber)); | |
763 | if (fSplitMode.Length()) | |
764 | fGridJDL->SetValue("Split", Form("\"%s\"", fSplitMode.Data())); | |
765 | // fGridJDL->SetSplitMode(fSplitMode, (UInt_t)fSplitMaxInputFileNumber); | |
766 | if (fAliROOTVersion.Length()) | |
767 | fGridJDL->AddToPackages("AliRoot", fAliROOTVersion); | |
768 | if (fROOTVersion.Length()) | |
769 | fGridJDL->AddToPackages("ROOT", fROOTVersion); | |
770 | if (fAPIVersion.Length()) | |
771 | fGridJDL->AddToPackages("APISCONFIG", fAPIVersion); | |
772 | fGridJDL->SetInputDataListFormat(fInputFormat); | |
773 | fGridJDL->SetInputDataList("wn.xml"); | |
c57f56b7 | 774 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), fAnalysisMacro.Data())); |
f10e8481 | 775 | TString analysisFile = fExecutable; |
776 | analysisFile.ReplaceAll(".sh", ".root"); | |
777 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(),analysisFile.Data())); | |
c57f56b7 | 778 | if (IsUsingTags() && !gSystem->AccessPathName("ConfigureCuts.C")) |
779 | fGridJDL->AddToInputSandbox(Form("LF:%s/ConfigureCuts.C", workdir.Data())); | |
780 | if (fAdditionalLibs.Length()) { | |
781 | arr = fAdditionalLibs.Tokenize(" "); | |
782 | TIter next(arr); | |
783 | while ((os=(TObjString*)next())) { | |
784 | if (os->GetString().Contains(".so")) continue; | |
785 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), os->GetString().Data())); | |
786 | } | |
787 | delete arr; | |
788 | } | |
4e5c5506 | 789 | if (fPackages) { |
790 | TIter next(fPackages); | |
791 | TObject *obj; | |
792 | while ((obj=next())) | |
793 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), obj->GetName())); | |
794 | } | |
c57f56b7 | 795 | if (fOutputArchive.Length()) { |
796 | arr = fOutputArchive.Tokenize(" "); | |
797 | TIter next(arr); | |
798 | while ((os=(TObjString*)next())) | |
43da816a | 799 | if (!os->GetString().Contains("@") && fCloseSE.Length()) |
800 | fGridJDL->AddToOutputArchive(Form("%s@%s",os->GetString().Data(), fCloseSE.Data())); | |
801 | else | |
802 | fGridJDL->AddToOutputArchive(os->GetString()); | |
c57f56b7 | 803 | delete arr; |
804 | } | |
c57f56b7 | 805 | arr = fOutputFiles.Tokenize(" "); |
806 | TIter next(arr); | |
43da816a | 807 | while ((os=(TObjString*)next())) { |
e1eaf596 | 808 | // Ignore ouputs in jdl that are also in outputarchive |
809 | TString sout = os->GetString(); | |
810 | if (sout.Index("@")>0) sout.Remove(sout.Index("@")); | |
811 | if (fOutputArchive.Contains(sout)) continue; | |
43da816a | 812 | if (!os->GetString().Contains("@") && fCloseSE.Length()) |
813 | fGridJDL->AddToOutputSandbox(Form("%s@%s",os->GetString().Data(), fCloseSE.Data())); | |
814 | else | |
815 | fGridJDL->AddToOutputSandbox(os->GetString()); | |
816 | } | |
c57f56b7 | 817 | delete arr; |
818 | // fGridJDL->SetPrice((UInt_t)fPrice); | |
819 | fGridJDL->SetValue("Price", Form("\"%d\"", fPrice)); | |
0d5d317c | 820 | TString validationScript = fExecutable; |
821 | validationScript.ReplaceAll(".sh", "_validation.sh"); | |
822 | fGridJDL->SetValidationCommand(Form("%s/%s", workdir.Data(),validationScript.Data())); | |
c57f56b7 | 823 | if (fMasterResubmitThreshold) fGridJDL->SetValue("MasterResubmitThreshold", Form("\"%d%%\"", fMasterResubmitThreshold)); |
d2a409b2 | 824 | // Write a jdl with 2 input parameters: collection name and output dir name. |
825 | WriteJDL(copy); | |
c57f56b7 | 826 | } |
827 | // Copy jdl to grid workspace | |
a8739e8a | 828 | if (copy) { |
c57f56b7 | 829 | if (fAdditionalLibs.Length()) { |
e7c71df0 | 830 | arr = fAdditionalLibs.Tokenize(" "); |
c57f56b7 | 831 | TObjString *os; |
832 | TIter next(arr); | |
833 | while ((os=(TObjString*)next())) { | |
c57f56b7 | 834 | if (os->GetString().Contains(".so")) continue; |
4e5c5506 | 835 | Info("CreateJDL", "\n##### Copying dependency: <%s> to your alien workspace", os->GetString().Data()); |
c57f56b7 | 836 | if (FileExists(os->GetString())) gGrid->Rm(os->GetString()); |
837 | TFile::Cp(Form("file:%s",os->GetString().Data()), Form("alien://%s/%s", workdir.Data(), os->GetString().Data())); | |
838 | } | |
839 | delete arr; | |
840 | } | |
4e5c5506 | 841 | if (fPackages) { |
842 | TIter next(fPackages); | |
843 | TObject *obj; | |
844 | while ((obj=next())) { | |
845 | Info("CreateJDL", "\n##### Copying dependency: <%s> to your alien workspace", obj->GetName()); | |
846 | TFile::Cp(Form("file:%s",obj->GetName()), Form("alien://%s/%s", workdir.Data(), obj->GetName())); | |
847 | } | |
848 | } | |
c57f56b7 | 849 | } |
850 | return kTRUE; | |
851 | } | |
852 | ||
a8739e8a | 853 | //______________________________________________________________________________ |
d2a409b2 | 854 | Bool_t AliAnalysisAlien::WriteJDL(Bool_t copy) |
a8739e8a | 855 | { |
856 | // Writes one or more JDL's corresponding to findex. If findex is negative, | |
857 | // all run numbers are considered in one go (jdl). For non-negative indices | |
858 | // they correspond to the indices in the array fInputFiles. | |
859 | if (!fInputFiles) return kFALSE; | |
860 | TObjString *os; | |
a8739e8a | 861 | TString workdir = gGrid->GetHomeDirectory(); |
862 | workdir += fGridWorkingDir; | |
d2a409b2 | 863 | |
864 | if (!fRunNumbers.Length() && !fRunRange[0]) { | |
865 | // One jdl with no parameters in case input data is specified by name. | |
a8739e8a | 866 | TIter next(fInputFiles); |
867 | while ((os=(TObjString*)next())) | |
868 | fGridJDL->AddToInputDataCollection(Form("LF:%s,nodownload", os->GetString().Data())); | |
d2a409b2 | 869 | fGridJDL->SetOutputDirectory(Form("%s/#alien_counter_03i#", fGridOutputDir.Data())); |
a8739e8a | 870 | } else { |
d2a409b2 | 871 | // One jdl to be submitted with 2 input parameters: data collection name and output dir prefix |
872 | fGridJDL->AddToInputDataCollection(Form("LF:%s/$1,nodownload", workdir.Data())); | |
e1eaf596 | 873 | fGridJDL->SetOutputDirectory(Form("%s/$2/#alien_counter_03i#", fGridOutputDir.Data())); |
a8739e8a | 874 | } |
875 | ||
876 | ||
877 | // Generate the JDL as a string | |
878 | TString sjdl = fGridJDL->Generate(); | |
879 | Int_t index; | |
880 | index = sjdl.Index("Executable"); | |
881 | if (index >= 0) sjdl.Insert(index, "\n# This is the startup script\n"); | |
882 | index = sjdl.Index("Split "); | |
883 | if (index >= 0) sjdl.Insert(index, "\n# We split per storage element\n"); | |
884 | index = sjdl.Index("SplitMaxInputFileNumber"); | |
885 | if (index >= 0) sjdl.Insert(index, "\n# We want each subjob to get maximum this number of input files\n"); | |
886 | index = sjdl.Index("InputDataCollection"); | |
887 | if (index >= 0) sjdl.Insert(index, "# Input xml collections\n"); | |
a8739e8a | 888 | index = sjdl.Index("InputFile"); |
889 | if (index >= 0) sjdl.Insert(index, "\n# List of input files to be uploaded to wn's\n"); | |
890 | index = sjdl.Index("InputDataList "); | |
891 | if (index >= 0) sjdl.Insert(index, "\n# Collection to be processed on wn\n"); | |
892 | index = sjdl.Index("InputDataListFormat"); | |
893 | if (index >= 0) sjdl.Insert(index, "\n# Format of input data\n"); | |
894 | index = sjdl.Index("Price"); | |
895 | if (index >= 0) sjdl.Insert(index, "\n# AliEn price for this job\n"); | |
896 | index = sjdl.Index("Requirements"); | |
897 | if (index >= 0) sjdl.Insert(index, "\n# Additional requirements for the computing element\n"); | |
898 | index = sjdl.Index("Packages"); | |
899 | if (index >= 0) sjdl.Insert(index, "\n# Packages to be used\n"); | |
900 | index = sjdl.Index("User ="); | |
901 | if (index >= 0) sjdl.Insert(index, "\n# AliEn user\n"); | |
902 | index = sjdl.Index("TTL"); | |
903 | if (index >= 0) sjdl.Insert(index, "\n# Time to live for the job\n"); | |
904 | index = sjdl.Index("OutputFile"); | |
905 | if (index >= 0) sjdl.Insert(index, "\n# List of output files to be registered\n"); | |
906 | index = sjdl.Index("OutputDir"); | |
907 | if (index >= 0) sjdl.Insert(index, "\n# Output directory\n"); | |
908 | index = sjdl.Index("OutputArchive"); | |
909 | if (index >= 0) sjdl.Insert(index, "\n# Files to be archived\n"); | |
910 | index = sjdl.Index("MaxInitFailed"); | |
911 | if (index >= 0) sjdl.Insert(index, "\n# Maximum number of first failing jobs to abort the master job\n"); | |
912 | index = sjdl.Index("MasterResubmitThreshold"); | |
913 | if (index >= 0) sjdl.Insert(index, "\n# Resubmit failed jobs until DONE rate reaches this percentage\n"); | |
914 | sjdl.ReplaceAll("ValidationCommand", "Validationcommand"); | |
915 | index = sjdl.Index("Validationcommand"); | |
916 | if (index >= 0) sjdl.Insert(index, "\n# Validation script to be run for each subjob\n"); | |
917 | sjdl.ReplaceAll("\"LF:", "\n \"LF:"); | |
918 | sjdl.ReplaceAll("(member", "\n (member"); | |
919 | sjdl.ReplaceAll("\",\"VO_", "\",\n \"VO_"); | |
920 | sjdl.ReplaceAll("{", "{\n "); | |
921 | sjdl.ReplaceAll("};", "\n};"); | |
922 | sjdl.ReplaceAll("{\n \n", "{\n"); | |
923 | sjdl.ReplaceAll("\n\n", "\n"); | |
924 | sjdl.ReplaceAll("OutputDirectory", "OutputDir"); | |
925 | sjdl += "JDLVariables = \n{\n \"Packages\",\n \"OutputDir\"\n};\n"; | |
f60ef0ba | 926 | sjdl.Prepend(Form("Jobtag = {\n \"comment:%s\"\n};\n", fJobTag.Data())); |
a8739e8a | 927 | index = sjdl.Index("JDLVariables"); |
928 | if (index >= 0) sjdl.Insert(index, "\n# JDL variables\n"); | |
929 | // Write jdl to file | |
a8739e8a | 930 | ofstream out; |
d2a409b2 | 931 | out.open(fJDLName.Data(), ios::out); |
a8739e8a | 932 | if (out.bad()) { |
d2a409b2 | 933 | Error("CreateJDL", "Bad file name: %s", fJDLName.Data()); |
a8739e8a | 934 | return kFALSE; |
935 | } | |
936 | out << sjdl << endl; | |
937 | ||
938 | // Copy jdl to grid workspace | |
939 | if (!copy) { | |
940 | Info("CreateJDL", "\n##### You may want to review jdl:%s and analysis macro:%s before running in <submit> mode", fJDLName.Data(), fAnalysisMacro.Data()); | |
941 | } else { | |
d2a409b2 | 942 | Info("CreateJDL", "\n##### Copying JDL file <%s> to your AliEn output directory", fJDLName.Data()); |
943 | TString locjdl = Form("%s/%s", fGridOutputDir.Data(),fJDLName.Data()); | |
a3e84053 | 944 | if (fProductionMode) |
b5fe9cba | 945 | locjdl = Form("%s/%s", workdir.Data(),fJDLName.Data()); |
d2a409b2 | 946 | if (FileExists(locjdl)) gGrid->Rm(locjdl); |
5513444a | 947 | TFile::Cp(Form("file:%s",fJDLName.Data()), Form("alien://%s", locjdl.Data())); |
a8739e8a | 948 | } |
949 | return kTRUE; | |
950 | } | |
951 | ||
c57f56b7 | 952 | //______________________________________________________________________________ |
5513444a | 953 | Bool_t AliAnalysisAlien::FileExists(const char *lfn) |
c57f56b7 | 954 | { |
955 | // Returns true if file exists. | |
5513444a | 956 | if (!gGrid) return kFALSE; |
c57f56b7 | 957 | TGridResult *res = gGrid->Ls(lfn); |
958 | if (!res) return kFALSE; | |
959 | TMap *map = dynamic_cast<TMap*>(res->At(0)); | |
960 | if (!map) { | |
961 | delete res; | |
962 | return kFALSE; | |
963 | } | |
964 | TObjString *objs = dynamic_cast<TObjString*>(map->GetValue("name")); | |
965 | if (!objs || !objs->GetString().Length()) { | |
966 | delete res; | |
967 | return kFALSE; | |
968 | } | |
969 | delete res; | |
970 | return kTRUE; | |
971 | } | |
972 | ||
923e2ca5 | 973 | //______________________________________________________________________________ |
974 | Bool_t AliAnalysisAlien::DirectoryExists(const char *dirname) | |
975 | { | |
976 | // Returns true if directory exists. Can be also a path. | |
977 | if (!gGrid) return kFALSE; | |
978 | // Check if dirname is a path | |
979 | TString dirstripped = dirname; | |
980 | dirstripped = dirstripped.Strip(); | |
981 | dirstripped = dirstripped.Strip(TString::kTrailing, '/'); | |
982 | TString dir = gSystem->BaseName(dirstripped); | |
983 | dir += "/"; | |
984 | TString path = gSystem->DirName(dirstripped); | |
985 | TGridResult *res = gGrid->Ls(path, "-F"); | |
986 | if (!res) return kFALSE; | |
987 | TIter next(res); | |
988 | TMap *map; | |
989 | TObject *obj; | |
990 | while ((map=dynamic_cast<TMap*>(next()))) { | |
991 | obj = map->GetValue("name"); | |
992 | if (!obj) break; | |
993 | if (dir == obj->GetName()) { | |
994 | delete res; | |
995 | return kTRUE; | |
996 | } | |
997 | } | |
998 | delete res; | |
999 | return kFALSE; | |
1000 | } | |
1001 | ||
c57f56b7 | 1002 | //______________________________________________________________________________ |
1003 | void AliAnalysisAlien::CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags) | |
1004 | { | |
1005 | // Check input data type. | |
1006 | is_collection = kFALSE; | |
1007 | is_xml = kFALSE; | |
1008 | use_tags = kFALSE; | |
1009 | if (!gGrid) { | |
1010 | Error("CheckDataType", "No connection to grid"); | |
1011 | return; | |
1012 | } | |
1013 | is_collection = IsCollection(lfn); | |
1014 | TString msg = "\n##### file: "; | |
1015 | msg += lfn; | |
1016 | if (is_collection) { | |
1017 | msg += " type: raw_collection;"; | |
1018 | // special treatment for collections | |
1019 | is_xml = kFALSE; | |
1020 | // check for tag files in the collection | |
1021 | TGridResult *res = gGrid->Command(Form("listFilesFromCollection -z -v %s",lfn), kFALSE); | |
1022 | if (!res) { | |
1023 | msg += " using_tags: No (unknown)"; | |
1024 | Info("CheckDataType", msg.Data()); | |
1025 | return; | |
1026 | } | |
1027 | const char* typeStr = res->GetKey(0, "origLFN"); | |
1028 | if (!typeStr || !strlen(typeStr)) { | |
1029 | msg += " using_tags: No (unknown)"; | |
1030 | Info("CheckDataType", msg.Data()); | |
1031 | return; | |
1032 | } | |
1033 | TString file = typeStr; | |
1034 | use_tags = file.Contains(".tag"); | |
1035 | if (use_tags) msg += " using_tags: Yes"; | |
1036 | else msg += " using_tags: No"; | |
1037 | Info("CheckDataType", msg.Data()); | |
1038 | return; | |
1039 | } | |
1040 | TString slfn(lfn); | |
1041 | slfn.ToLower(); | |
1042 | is_xml = slfn.Contains(".xml"); | |
1043 | if (is_xml) { | |
1044 | // Open xml collection and check if there are tag files inside | |
1045 | msg += " type: xml_collection;"; | |
1046 | TGridCollection *coll = (TGridCollection*)gROOT->ProcessLine(Form("TAlienCollection::Open(\"alien://%s\",1);",lfn)); | |
1047 | if (!coll) { | |
1048 | msg += " using_tags: No (unknown)"; | |
1049 | Info("CheckDataType", msg.Data()); | |
1050 | return; | |
1051 | } | |
1052 | TMap *map = coll->Next(); | |
1053 | if (!map) { | |
1054 | msg += " using_tags: No (unknown)"; | |
1055 | Info("CheckDataType", msg.Data()); | |
1056 | return; | |
1057 | } | |
1058 | map = (TMap*)map->GetValue(""); | |
1059 | TString file; | |
1060 | if (map && map->GetValue("name")) file = map->GetValue("name")->GetName(); | |
1061 | use_tags = file.Contains(".tag"); | |
1062 | delete coll; | |
1063 | if (use_tags) msg += " using_tags: Yes"; | |
1064 | else msg += " using_tags: No"; | |
1065 | Info("CheckDataType", msg.Data()); | |
1066 | return; | |
1067 | } | |
1068 | use_tags = slfn.Contains(".tag"); | |
1069 | if (slfn.Contains(".root")) msg += " type: root file;"; | |
1070 | else msg += " type: unhnown file;"; | |
1071 | if (use_tags) msg += " using_tags: Yes"; | |
1072 | else msg += " using_tags: No"; | |
1073 | Info("CheckDataType", msg.Data()); | |
1074 | } | |
1075 | ||
4e5c5506 | 1076 | //______________________________________________________________________________ |
1077 | void AliAnalysisAlien::EnablePackage(const char *package) | |
1078 | { | |
1079 | // Enables a par file supposed to exist in the current directory. | |
1080 | TString pkg(package); | |
1081 | pkg.ReplaceAll(".par", ""); | |
1082 | pkg += ".par"; | |
1083 | if (gSystem->AccessPathName(pkg)) { | |
1084 | Error("EnablePackage", "Package %s not found", pkg.Data()); | |
1085 | return; | |
1086 | } | |
1087 | if (!TObject::TestBit(AliAnalysisGrid::kUsePars)) | |
1088 | Info("EnablePackage", "AliEn plugin will use .par packages"); | |
1089 | TObject::SetBit(AliAnalysisGrid::kUsePars, kTRUE); | |
1090 | if (!fPackages) { | |
1091 | fPackages = new TObjArray(); | |
1092 | fPackages->SetOwner(); | |
1093 | } | |
1094 | fPackages->Add(new TObjString(pkg)); | |
1095 | } | |
1096 | ||
d2a409b2 | 1097 | //______________________________________________________________________________ |
1098 | const char *AliAnalysisAlien::GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone) | |
1099 | { | |
1100 | // Get job status for all jobs with jobid>jobidstart. | |
1101 | static char mstatus[20]; | |
1102 | mstatus[0] = '\0'; | |
1103 | nrunning = 0; | |
1104 | nwaiting = 0; | |
1105 | nerror = 0; | |
1106 | ndone = 0; | |
1107 | TGridJobStatusList *list = gGrid->Ps(""); | |
1108 | if (!list) return mstatus; | |
1109 | Int_t nentries = list->GetSize(); | |
1110 | TGridJobStatus *status; | |
1111 | Int_t pid; | |
1112 | for (Int_t ijob=0; ijob<nentries; ijob++) { | |
1113 | status = (TGridJobStatus *)list->At(ijob); | |
1114 | pid = gROOT->ProcessLine(Form("atoi(((TAlienJobStatus*)0x%lx)->GetKey(\"queueId\"));", (ULong_t)status)); | |
1115 | if (pid<jobidstart) continue; | |
1116 | if (pid == lastid) { | |
1117 | gROOT->ProcessLine(Form("sprintf((char*)0x%lx,((TAlienJobStatus*)0x%lx)->GetKey(\"status\"));",(ULong_t)mstatus, (ULong_t)status)); | |
1118 | } | |
1119 | switch (status->GetStatus()) { | |
1120 | case TGridJobStatus::kWAITING: | |
1121 | nwaiting++; break; | |
1122 | case TGridJobStatus::kRUNNING: | |
1123 | nrunning++; break; | |
1124 | case TGridJobStatus::kABORTED: | |
1125 | case TGridJobStatus::kFAIL: | |
1126 | case TGridJobStatus::kUNKNOWN: | |
1127 | nerror++; break; | |
1128 | case TGridJobStatus::kDONE: | |
1129 | ndone++; | |
1130 | } | |
1131 | } | |
1132 | list->Delete(); | |
1133 | delete list; | |
1134 | return mstatus; | |
1135 | } | |
1136 | ||
c57f56b7 | 1137 | //______________________________________________________________________________ |
1138 | Bool_t AliAnalysisAlien::IsCollection(const char *lfn) const | |
1139 | { | |
1140 | // Returns true if file is a collection. Functionality duplicated from | |
1141 | // TAlien::Type() because we don't want to directly depend on TAlien. | |
1142 | if (!gGrid) { | |
1143 | Error("IsCollection", "No connection to grid"); | |
1144 | return kFALSE; | |
1145 | } | |
1146 | TGridResult *res = gGrid->Command(Form("type -z %s",lfn),kFALSE); | |
1147 | if (!res) return kFALSE; | |
1148 | const char* typeStr = res->GetKey(0, "type"); | |
1149 | if (!typeStr || !strlen(typeStr)) return kFALSE; | |
1150 | if (!strcmp(typeStr, "collection")) return kTRUE; | |
1151 | delete res; | |
1152 | return kFALSE; | |
1153 | } | |
1154 | ||
16a4353c | 1155 | //______________________________________________________________________________ |
1156 | void AliAnalysisAlien::Print(Option_t *) const | |
1157 | { | |
1158 | // Print current plugin settings. | |
923e2ca5 | 1159 | Printf("### AliEn analysis plugin current settings ###"); |
1160 | Printf("= Production mode:______________________________ %d", fProductionMode); | |
1161 | Printf("= Version of API requested: ____________________ %s", fAPIVersion.Data()); | |
1162 | Printf("= Version of ROOT requested: ___________________ %s", fROOTVersion.Data()); | |
1163 | Printf("= Version of AliRoot requested: ________________ %s", fAliROOTVersion.Data()); | |
16a4353c | 1164 | if (fUser.Length()) |
923e2ca5 | 1165 | Printf("= User running the plugin: _____________________ %s", fUser.Data()); |
1166 | Printf("= Grid workdir relative to user $HOME: _________ %s", fGridWorkingDir.Data()); | |
1167 | Printf("= Grid output directory relative to workdir: ___ %s", fGridOutputDir.Data()); | |
1168 | Printf("= Data base directory path requested: __________ %s", fGridDataDir.Data()); | |
1169 | Printf("= Data search pattern: _________________________ %s", fDataPattern.Data()); | |
1170 | Printf("= Input data format: ___________________________ %s", fInputFormat.Data()); | |
16a4353c | 1171 | if (fRunNumbers.Length()) |
923e2ca5 | 1172 | Printf("= Run numbers to be processed: _________________ %s", fRunNumbers.Data()); |
16a4353c | 1173 | if (fRunRange[0]) |
923e2ca5 | 1174 | Printf("= Run range to be processed: ___________________ %d-%d", fRunRange[0], fRunRange[1]); |
16a4353c | 1175 | if (!fRunRange[0] && !fRunNumbers.Length()) { |
1176 | TIter next(fInputFiles); | |
1177 | TObject *obj; | |
1178 | TString list; | |
1179 | while ((obj=next())) list += obj->GetName(); | |
923e2ca5 | 1180 | Printf("= Input files to be processed: _________________ %s", list.Data()); |
16a4353c | 1181 | } |
1182 | if (TestBit(AliAnalysisGrid::kTest)) | |
923e2ca5 | 1183 | Printf("= Number of input files used in test mode: _____ %d", fNtestFiles); |
1184 | Printf("= List of output files to be registered: _______ %s", fOutputFiles.Data()); | |
1185 | Printf("= List of outputs going to be archived: ________ %s", fOutputArchive.Data()); | |
1186 | Printf("= List of outputs that should not be merged: ___ %s", fMergeExcludes.Data()); | |
1187 | Printf("====================================================================="); | |
1188 | Printf("= Job price: ___________________________________ %d", fPrice); | |
1189 | Printf("= Time to live (TTL): __________________________ %d", fTTL); | |
1190 | Printf("= Max files per subjob: ________________________ %d", fSplitMaxInputFileNumber); | |
16a4353c | 1191 | if (fMaxInitFailed>0) |
923e2ca5 | 1192 | Printf("= Max number of subjob fails to kill: __________ %d", fMaxInitFailed); |
16a4353c | 1193 | if (fMasterResubmitThreshold>0) |
923e2ca5 | 1194 | Printf("= Resubmit master job if failed subjobs >_______ %d", fMasterResubmitThreshold); |
319593fb | 1195 | if (fNrunsPerMaster>0) |
923e2ca5 | 1196 | Printf("= Number of runs per master job: _______________ %d", fNrunsPerMaster); |
1197 | Printf("= Number of files in one chunk to be merged: ___ %d", fMaxMergeFiles); | |
1198 | Printf("= Name of the generated execution script: ______ %s",fExecutable.Data()); | |
16a4353c | 1199 | if (fArguments.Length()) |
923e2ca5 | 1200 | Printf("= Arguments for the execution script: __________ %s",fArguments.Data()); |
1201 | Printf("= Name of the generated analysis macro: ________ %s",fAnalysisMacro.Data()); | |
1202 | Printf("= User analysis files to be deployed: __________ %s",fAnalysisSource.Data()); | |
1203 | Printf("= Additional libs to be loaded or souces to be compiled runtime: <%s>",fAdditionalLibs.Data()); | |
1204 | Printf("= Master jobs split mode: ______________________ %s",fSplitMode.Data()); | |
16a4353c | 1205 | if (fDatasetName) |
923e2ca5 | 1206 | Printf("= Custom name for the dataset to be created: ___ %s", fDatasetName.Data()); |
1207 | Printf("= Name of the generated JDL: ___________________ %s", fJDLName.Data()); | |
16a4353c | 1208 | if (fIncludePath.Data()) |
923e2ca5 | 1209 | Printf("= Include path for runtime task compilation: ___ %s", fIncludePath.Data()); |
16a4353c | 1210 | if (fCloseSE.Length()) |
923e2ca5 | 1211 | Printf("= Force job outputs to storage element: ________ %s", fCloseSE.Data()); |
16a4353c | 1212 | if (fFriendChainName.Length()) |
923e2ca5 | 1213 | Printf("= Open friend chain file on worker: ____________ %s", fFriendChainName.Data()); |
16a4353c | 1214 | if (fPackages) { |
1215 | TIter next(fPackages); | |
1216 | TObject *obj; | |
1217 | TString list; | |
1218 | while ((obj=next())) list += obj->GetName(); | |
923e2ca5 | 1219 | Printf("= Par files to be used: ________________________ %s", list.Data()); |
16a4353c | 1220 | } |
1221 | } | |
1222 | ||
c57f56b7 | 1223 | //______________________________________________________________________________ |
1224 | void AliAnalysisAlien::SetDefaults() | |
1225 | { | |
1226 | // Set default values for everything. What cannot be filled will be left empty. | |
1227 | if (fGridJDL) delete fGridJDL; | |
1228 | fGridJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); | |
1229 | fPrice = 1; | |
1230 | fTTL = 30000; | |
1231 | fSplitMaxInputFileNumber = 100; | |
1232 | fMaxInitFailed = 0; | |
1233 | fMasterResubmitThreshold = 0; | |
bb885a9e | 1234 | fNtestFiles = 10; |
a8739e8a | 1235 | fRunRange[0] = 0; |
1236 | fRunRange[1] = 0; | |
319593fb | 1237 | fNrunsPerMaster = 1; |
16a4353c | 1238 | fMaxMergeFiles = 100; |
c57f56b7 | 1239 | fRunNumbers = ""; |
1240 | fExecutable = "analysis.sh"; | |
1241 | fArguments = ""; | |
1242 | fAnalysisMacro = "myAnalysis.C"; | |
1243 | fAnalysisSource = ""; | |
1244 | fAdditionalLibs = ""; | |
1245 | fSplitMode = "se"; | |
1246 | fAPIVersion = ""; | |
1247 | fROOTVersion = ""; | |
1248 | fAliROOTVersion = ""; | |
1249 | fUser = ""; // Your alien user name | |
1250 | fGridWorkingDir = ""; | |
1251 | fGridDataDir = ""; // Can be like: /alice/sim/PDC_08a/LHC08c9/ | |
1252 | fDataPattern = "*AliESDs.root"; // Can be like: *AliESDs.root, */pass1/*AliESDs.root, ... | |
0df6ccf2 | 1253 | fFriendChainName = ""; |
c57f56b7 | 1254 | fGridOutputDir = "output"; |
1255 | fOutputArchive = "log_archive.zip:stdout,stderr root_archive.zip:*.root"; | |
1256 | fOutputFiles = ""; // Like "AliAODs.root histos.root" | |
1257 | fInputFormat = "xml-single"; | |
1258 | fJDLName = "analysis.jdl"; | |
c6cb3634 | 1259 | fJobTag = "Automatically generated analysis JDL"; |
bb885a9e | 1260 | fMergeExcludes = ""; |
c57f56b7 | 1261 | } |
1262 | ||
1263 | //______________________________________________________________________________ | |
1264 | Bool_t AliAnalysisAlien::MergeOutputs() | |
1265 | { | |
1266 | // Merge analysis outputs existing in the AliEn space. | |
1267 | if (TestBit(AliAnalysisGrid::kTest)) return kTRUE; | |
1268 | if (TestBit(AliAnalysisGrid::kOffline)) return kFALSE; | |
1269 | if (!Connect()) { | |
1270 | Error("MergeOutputs", "Cannot merge outputs without grid connection. Terminate will NOT be executed"); | |
1271 | return kFALSE; | |
1272 | } | |
1273 | // Get the output path | |
d2a409b2 | 1274 | if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("/%s/%s/%s", gGrid->GetHomeDirectory(), fGridWorkingDir.Data(), fGridOutputDir.Data()); |
923e2ca5 | 1275 | if (!DirectoryExists(fGridOutputDir)) { |
c57f56b7 | 1276 | Error("MergeOutputs", "Grid output directory %s not found. Terminate() will NOT be executed", fGridOutputDir.Data()); |
1277 | return kFALSE; | |
1278 | } | |
1279 | if (!fOutputFiles.Length()) { | |
1280 | Error("MergeOutputs", "No output file names defined. Are you running the right AliAnalysisAlien configuration ?"); | |
1281 | return kFALSE; | |
1282 | } | |
1283 | TObjArray *list = fOutputFiles.Tokenize(" "); | |
1284 | TIter next(list); | |
1285 | TObjString *str; | |
1286 | TString command; | |
1287 | TString output_file; | |
16a4353c | 1288 | TString output_chunk; |
1289 | TString previous_chunk; | |
1290 | Int_t count_chunk = 0; | |
1291 | Int_t count_zero = fMaxMergeFiles; | |
c57f56b7 | 1292 | Bool_t merged = kTRUE; |
1293 | while((str=(TObjString*)next())) { | |
1294 | output_file = str->GetString(); | |
1295 | Int_t index = output_file.Index("@"); | |
1296 | if (index > 0) output_file.Remove(index); | |
319593fb | 1297 | // Skip already merged outputs |
1298 | if (!gSystem->AccessPathName(output_file)) { | |
1299 | Info("MergeOutputs", "Output file <%s> found. Not merging again.", output_file.Data()); | |
1300 | continue; | |
1301 | } | |
bb885a9e | 1302 | if (fMergeExcludes.Length() && |
1303 | fMergeExcludes.Contains(output_file.Data())) continue; | |
16a4353c | 1304 | // Perform a 'find' command in the output directory, looking for registered outputs |
d2a409b2 | 1305 | command = Form("find %s/ *%s", fGridOutputDir.Data(), output_file.Data()); |
923e2ca5 | 1306 | Printf("command: %s", command.Data()); |
c57f56b7 | 1307 | TGridResult *res = gGrid->Command(command); |
1308 | if (!res) continue; | |
1309 | TFileMerger *fm = 0; | |
1310 | TIter nextmap(res); | |
ab254fd1 | 1311 | TMap *map = 0; |
16a4353c | 1312 | previous_chunk = ""; |
1313 | count_chunk = 0; | |
319593fb | 1314 | // Check if there is a merge operation to resume |
1315 | output_chunk = output_file; | |
1316 | output_chunk.ReplaceAll(".root", "_*.root"); | |
1317 | if (!gSystem->Exec(Form("ls %s", output_chunk.Data()))) { | |
1318 | while (1) { | |
1319 | for (Int_t counter=0; counter<fMaxMergeFiles; counter++) map = (TMap*)nextmap(); | |
1320 | if (!map) { | |
1321 | Error("MergeOutputs", "Cannot resume merging for <%s>, nentries=%d", output_file.Data(), res->GetSize()); | |
1322 | delete res; | |
1323 | return kFALSE; | |
1324 | } | |
1325 | output_chunk = output_file; | |
1326 | output_chunk.ReplaceAll(".root", Form("_%04d.root", count_chunk)); | |
923e2ca5 | 1327 | Printf("%s", output_chunk.Data()); |
319593fb | 1328 | count_chunk++; |
1329 | if (gSystem->AccessPathName(output_chunk)) continue; | |
1330 | // Merged file with chunks up to <count_chunk> found | |
923e2ca5 | 1331 | Printf("Resume merging of <%s> from <%s>", output_file.Data(), output_chunk.Data()); |
319593fb | 1332 | previous_chunk = output_chunk; |
1333 | break; | |
1334 | } | |
1335 | } | |
16a4353c | 1336 | count_zero = fMaxMergeFiles; |
c57f56b7 | 1337 | while ((map=(TMap*)nextmap())) { |
16a4353c | 1338 | // Loop 'find' results and get next LFN |
1339 | if (count_zero == fMaxMergeFiles) { | |
1340 | // First file in chunk - create file merger and add previous chunk if any. | |
1341 | fm = new TFileMerger(kFALSE); | |
1342 | fm->SetFastMethod(kTRUE); | |
1343 | if (previous_chunk.Length()) fm->AddFile(previous_chunk.Data()); | |
1344 | output_chunk = output_file; | |
1345 | output_chunk.ReplaceAll(".root", Form("_%04d.root", count_chunk)); | |
1346 | } | |
1347 | // If last file found, put merged results in the output file | |
1348 | if (map == res->Last()) output_chunk = output_file; | |
c57f56b7 | 1349 | TObjString *objs = dynamic_cast<TObjString*>(map->GetValue("turl")); |
1350 | if (!objs || !objs->GetString().Length()) { | |
16a4353c | 1351 | // Nothing found - skip this output |
c57f56b7 | 1352 | delete res; |
16a4353c | 1353 | delete fm; |
1354 | break; | |
1355 | } | |
1356 | // Add file to be merged and decrement chunk counter. | |
1357 | fm->AddFile(objs->GetString()); | |
1358 | count_zero--; | |
1359 | if (count_zero==0 || map == res->Last()) { | |
1360 | fm->OutputFile(output_chunk); | |
1361 | if (!fm->GetMergeList() || !fm->GetMergeList()->GetSize()) { | |
1362 | // Nothing found - skip this output | |
1363 | Warning("MergeOutputs", "No <%s> files found.", output_file.Data()); | |
1364 | delete res; | |
1365 | delete fm; | |
1366 | break; | |
1367 | } | |
1368 | // Merge the outputs, then go to next chunk | |
1369 | if (!fm->Merge()) { | |
1370 | Error("MergeOutputs", "Could not merge all <%s> files", output_file.Data()); | |
1371 | delete res; | |
1372 | delete fm; | |
1373 | merged = kFALSE; | |
1374 | break; | |
1375 | } else { | |
1376 | Info("MergeOutputs", "\n##### Merged %d output files to <%s>", fm->GetMergeList()->GetSize(), output_chunk.Data()); | |
319593fb | 1377 | gSystem->Unlink(previous_chunk); |
16a4353c | 1378 | } |
1379 | if (map == res->Last()) { | |
1380 | delete res; | |
1381 | delete fm; | |
1382 | break; | |
1383 | } | |
1384 | count_chunk++; | |
1385 | count_zero = fMaxMergeFiles; | |
1386 | previous_chunk = output_chunk; | |
c57f56b7 | 1387 | } |
c57f56b7 | 1388 | } |
c57f56b7 | 1389 | } |
1390 | if (!merged) { | |
1391 | Error("MergeOutputs", "Terminate() will NOT be executed"); | |
1392 | } | |
1393 | return merged; | |
1394 | } | |
1395 | ||
bb885a9e | 1396 | //______________________________________________________________________________ |
1397 | void AliAnalysisAlien::SetDefaultOutputs(Bool_t flag) | |
1398 | { | |
1399 | // Use the output files connected to output containers from the analysis manager | |
1400 | // rather than the files defined by SetOutputFiles | |
1401 | if (flag && !TObject::TestBit(AliAnalysisGrid::kDefaultOutputs)) | |
1402 | Info("SetDefaultOutputs", "Plugin will use the output files taken from \ | |
1403 | analysis manager"); | |
1404 | TObject::SetBit(AliAnalysisGrid::kDefaultOutputs, flag); | |
1405 | } | |
1406 | ||
5513444a | 1407 | //______________________________________________________________________________ |
1408 | Bool_t AliAnalysisAlien::StartAnalysis(Long64_t /*nentries*/, Long64_t /*firstEntry*/) | |
c57f56b7 | 1409 | { |
1410 | // Start remote grid analysis. | |
1411 | ||
43da816a | 1412 | // Check if output files have to be taken from the analysis manager |
1413 | if (TestBit(AliAnalysisGrid::kDefaultOutputs)) { | |
1414 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); | |
1415 | if (!mgr || !mgr->IsInitialized()) { | |
1416 | Error("StartAnalysis", "You need an initialized analysis manager for this"); | |
5513444a | 1417 | return kFALSE; |
43da816a | 1418 | } |
1419 | fOutputFiles = ""; | |
1420 | TIter next(mgr->GetOutputs()); | |
1421 | AliAnalysisDataContainer *output; | |
1422 | while ((output=(AliAnalysisDataContainer*)next())) { | |
1423 | const char *filename = output->GetFileName(); | |
1424 | if (!(strcmp(filename, "default"))) { | |
1425 | if (!mgr->GetOutputEventHandler()) continue; | |
1426 | filename = mgr->GetOutputEventHandler()->GetOutputFileName(); | |
1427 | } | |
1428 | if (fOutputFiles.Length()) fOutputFiles += " "; | |
1429 | fOutputFiles += filename; | |
1430 | } | |
c07b9ce2 | 1431 | // Add extra files registered to the analysis manager |
1432 | if (mgr->GetExtraFiles().Length()) { | |
1433 | if (fOutputFiles.Length()) fOutputFiles += " "; | |
1434 | fOutputFiles += mgr->GetExtraFiles(); | |
1435 | } | |
43da816a | 1436 | } |
f7b1cbc2 | 1437 | // if (!fCloseSE.Length()) fCloseSE = gSystem->Getenv("alien_CLOSE_SE"); |
c57f56b7 | 1438 | if (TestBit(AliAnalysisGrid::kOffline)) { |
1439 | Info("StartAnalysis","\n##### OFFLINE MODE ##### Files to be used in GRID are produced but not copied \ | |
1440 | \n there nor any job run. You can revise the JDL and analysis \ | |
1441 | \n macro then run the same in \"submit\" mode."); | |
1442 | } else if (TestBit(AliAnalysisGrid::kTest)) { | |
1443 | Info("StartAnalysis","\n##### LOCAL MODE ##### Your analysis will be run locally on a subset of the requested \ | |
1444 | \n dataset."); | |
1445 | } else if (TestBit(AliAnalysisGrid::kSubmit)) { | |
1446 | Info("StartAnalysis","\n##### SUBMIT MODE ##### Files required by your analysis are copied to your grid working \ | |
1447 | \n space and job submitted."); | |
1448 | } else if (TestBit(AliAnalysisGrid::kMerge)) { | |
1449 | Info("StartAnalysis","\n##### MERGE MODE ##### The registered outputs of the analysis will be merged"); | |
5513444a | 1450 | return kTRUE; |
c57f56b7 | 1451 | } else { |
1452 | Info("StartAnalysis","\n##### FULL ANALYSIS MODE ##### Producing needed files and submitting your analysis job..."); | |
1453 | } | |
1454 | ||
1455 | if (!Connect()) { | |
1456 | Error("StartAnalysis", "Cannot start grid analysis without grid connection"); | |
5513444a | 1457 | return kFALSE; |
16a4353c | 1458 | } |
1459 | Print(); | |
c57f56b7 | 1460 | if (!CheckInputData()) { |
1461 | Error("StartAnalysis", "There was an error in preprocessing your requested input data"); | |
5513444a | 1462 | return kFALSE; |
c57f56b7 | 1463 | } |
1464 | CreateDataset(fDataPattern); | |
1465 | WriteAnalysisFile(); | |
1466 | WriteAnalysisMacro(); | |
1467 | WriteExecutable(); | |
1468 | WriteValidationScript(); | |
5513444a | 1469 | if (!CreateJDL()) return kFALSE; |
1470 | if (TestBit(AliAnalysisGrid::kOffline)) return kFALSE; | |
c57f56b7 | 1471 | if (TestBit(AliAnalysisGrid::kTest)) { |
1472 | // Locally testing the analysis | |
1473 | Info("StartAnalysis", "\n_______________________________________________________________________ \ | |
1474 | \n Running analysis script in a daughter shell as on a worker node \ | |
1475 | \n_______________________________________________________________________"); | |
1476 | TObjArray *list = fOutputFiles.Tokenize(" "); | |
1477 | TIter next(list); | |
1478 | TObjString *str; | |
1479 | TString output_file; | |
1480 | while((str=(TObjString*)next())) { | |
1481 | output_file = str->GetString(); | |
1482 | Int_t index = output_file.Index("@"); | |
1483 | if (index > 0) output_file.Remove(index); | |
43da816a | 1484 | if (!gSystem->AccessPathName(output_file)) gSystem->Exec(Form("rm %s", output_file.Data())); |
c57f56b7 | 1485 | } |
1486 | delete list; | |
1487 | gSystem->Exec(Form("bash %s 2>stderr", fExecutable.Data())); | |
0d5d317c | 1488 | TString validationScript = fExecutable; |
1489 | validationScript.ReplaceAll(".sh", "_validation.sh"); | |
1490 | gSystem->Exec(Form("bash %s",validationScript.Data())); | |
c57f56b7 | 1491 | // gSystem->Exec("cat stdout"); |
5513444a | 1492 | return kFALSE; |
c57f56b7 | 1493 | } |
5513444a | 1494 | // Check if submitting is managed by LPM manager |
a3e84053 | 1495 | if (fProductionMode) { |
5513444a | 1496 | TString prodfile = fJDLName; |
1497 | prodfile.ReplaceAll(".jdl", ".prod"); | |
1498 | WriteProductionFile(prodfile); | |
1499 | Info("StartAnalysis", "Job submitting is managed by LPM. Rerun in terminate mode after jobs finished."); | |
1500 | return kFALSE; | |
1501 | } | |
a8739e8a | 1502 | // Submit AliEn job(s) |
d2a409b2 | 1503 | gGrid->Cd(fGridOutputDir); |
a8739e8a | 1504 | TGridResult *res; |
c57f56b7 | 1505 | TString jobID = ""; |
d2a409b2 | 1506 | if (!fRunNumbers.Length() && !fRunRange[0]) { |
dd74a515 | 1507 | // Submit a given xml or a set of runs |
a8739e8a | 1508 | res = gGrid->Command(Form("submit %s", fJDLName.Data())); |
923e2ca5 | 1509 | Printf("*************************** %s",Form("submit %s", fJDLName.Data())); |
a8739e8a | 1510 | if (res) { |
1511 | const char *cjobId = res->GetKey(0,"jobId"); | |
1512 | if (!cjobId) { | |
1513 | Error("StartAnalysis", "Your JDL %s could not be submitted", fJDLName.Data()); | |
5513444a | 1514 | return kFALSE; |
a8739e8a | 1515 | } else { |
1516 | Info("StartAnalysis", "\n_______________________________________________________________________ \ | |
1517 | \n##### Your JDL %s was successfully submitted. \nTHE JOB ID IS: %s \ | |
1518 | \n_______________________________________________________________________", | |
1519 | fJDLName.Data(), cjobId); | |
1520 | jobID = cjobId; | |
1521 | } | |
1522 | delete res; | |
1523 | } | |
1524 | } else { | |
d2a409b2 | 1525 | // Submit for a range of enumeration of runs. |
1526 | Submit(); | |
c57f56b7 | 1527 | } |
a8739e8a | 1528 | |
c57f56b7 | 1529 | Info("StartAnalysis", "\n#### STARTING AN ALIEN SHELL FOR YOU. EXIT WHEN YOUR JOB %s HAS FINISHED. #### \ |
1530 | \n You may exit at any time and terminate the job later using the option <terminate> \ | |
1531 | \n ##################################################################################", jobID.Data()); | |
bb885a9e | 1532 | gSystem->Exec("aliensh"); |
5513444a | 1533 | return kTRUE; |
c57f56b7 | 1534 | } |
1535 | ||
d2a409b2 | 1536 | //______________________________________________________________________________ |
1537 | void AliAnalysisAlien::Submit() | |
1538 | { | |
1539 | // Submit all master jobs. | |
1540 | Int_t nmasterjobs = fInputFiles->GetEntries(); | |
1541 | Long_t tshoot = gSystem->Now(); | |
1542 | if (!fNsubmitted) SubmitNext(); | |
1543 | while (fNsubmitted < nmasterjobs) { | |
1544 | Long_t now = gSystem->Now(); | |
1545 | if ((now-tshoot)>30000) { | |
1546 | tshoot = now; | |
1547 | SubmitNext(); | |
1548 | } | |
1549 | } | |
1550 | } | |
1551 | ||
1552 | //______________________________________________________________________________ | |
1553 | void AliAnalysisAlien::SubmitNext() | |
1554 | { | |
1555 | // Submit next bunch of master jobs if the queue is free. | |
1556 | static Bool_t iscalled = kFALSE; | |
1557 | static Int_t firstmaster = 0; | |
1558 | static Int_t lastmaster = 0; | |
1559 | static Int_t npermaster = 0; | |
1560 | if (iscalled) return; | |
1561 | iscalled = kTRUE; | |
1562 | Int_t nrunning=0, nwaiting=0, nerror=0, ndone=0; | |
1563 | Int_t ntosubmit = 0; | |
1564 | TGridResult *res; | |
1565 | TString jobID = ""; | |
1566 | if (!fNsubmitted) ntosubmit = 1; | |
1567 | else { | |
1568 | TString status = GetJobStatus(firstmaster, lastmaster, nrunning, nwaiting, nerror, ndone); | |
923e2ca5 | 1569 | Printf("=== master %d: %s", lastmaster, status.Data()); |
d2a409b2 | 1570 | // If last master not split, just return |
1571 | if (status != "SPLIT") {iscalled = kFALSE; return;} | |
1572 | // No more than 100 waiting jobs | |
1573 | if (nwaiting>100) {iscalled = kFALSE; return;} | |
1574 | npermaster = (nrunning+nwaiting+nerror+ndone)/fNsubmitted; | |
1575 | if (npermaster) ntosubmit = (100-nwaiting)/npermaster; | |
923e2ca5 | 1576 | Printf("=== WAITING(%d) RUNNING(%d) DONE(%d) OTHER(%d) NperMaster=%d => to submit %d jobs", |
d2a409b2 | 1577 | nwaiting, nrunning, ndone, nerror, npermaster, ntosubmit); |
1578 | } | |
1579 | Int_t nmasterjobs = fInputFiles->GetEntries(); | |
1580 | for (Int_t i=0; i<ntosubmit; i++) { | |
1581 | // Submit for a range of enumeration of runs. | |
1582 | if (fNsubmitted>=nmasterjobs) {iscalled = kFALSE; return;} | |
1583 | TString query; | |
1584 | query = Form("submit %s %s %03d", fJDLName.Data(), fInputFiles->At(fNsubmitted)->GetName(), fNsubmitted); | |
923e2ca5 | 1585 | Printf("********* %s",query.Data()); |
d2a409b2 | 1586 | res = gGrid->Command(query); |
1587 | if (res) { | |
98ca124f | 1588 | TString cjobId1 = res->GetKey(0,"jobId"); |
1589 | if (!cjobId1.Length()) { | |
d2a409b2 | 1590 | Error("StartAnalysis", "Your JDL %s could not be submitted", fJDLName.Data()); |
1591 | iscalled = kFALSE; | |
1592 | return; | |
1593 | } else { | |
1594 | Info("StartAnalysis", "\n_______________________________________________________________________ \ | |
1595 | \n##### Your JDL %s submitted (%d to go). \nTHE JOB ID IS: %s \ | |
1596 | \n_______________________________________________________________________", | |
98ca124f | 1597 | fJDLName.Data(), nmasterjobs-fNsubmitted-1, cjobId1.Data()); |
d2a409b2 | 1598 | jobID += cjobId1; |
1599 | jobID += " "; | |
98ca124f | 1600 | lastmaster = cjobId1.Atoi(); |
d2a409b2 | 1601 | if (!firstmaster) firstmaster = lastmaster; |
1602 | fNsubmitted++; | |
1603 | } | |
1604 | delete res; | |
1605 | } | |
1606 | } | |
1607 | iscalled = kFALSE; | |
1608 | } | |
1609 | ||
c57f56b7 | 1610 | //______________________________________________________________________________ |
1611 | void AliAnalysisAlien::WriteAnalysisFile() | |
1612 | { | |
f10e8481 | 1613 | // Write current analysis manager into the file <analysisFile> |
1614 | TString analysisFile = fExecutable; | |
1615 | analysisFile.ReplaceAll(".sh", ".root"); | |
c57f56b7 | 1616 | if (!TestBit(AliAnalysisGrid::kSubmit)) { |
1617 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); | |
1618 | if (!mgr || !mgr->IsInitialized()) { | |
1619 | Error("WriteAnalysisFile", "You need an initialized analysis manager for this"); | |
1620 | return; | |
1621 | } | |
1622 | // Check analysis type | |
1623 | TObject *handler; | |
1624 | if (mgr->GetMCtruthEventHandler()) TObject::SetBit(AliAnalysisGrid::kUseMC); | |
1625 | handler = (TObject*)mgr->GetInputEventHandler(); | |
1626 | if (handler) { | |
1627 | if (handler->InheritsFrom("AliESDInputHandler")) TObject::SetBit(AliAnalysisGrid::kUseESD); | |
1628 | if (handler->InheritsFrom("AliAODInputHandler")) TObject::SetBit(AliAnalysisGrid::kUseAOD); | |
1629 | } | |
1630 | TDirectory *cdir = gDirectory; | |
f10e8481 | 1631 | TFile *file = TFile::Open(analysisFile, "RECREATE"); |
c57f56b7 | 1632 | if (file) { |
1633 | mgr->Write(); | |
1634 | delete file; | |
1635 | } | |
1636 | if (cdir) cdir->cd(); | |
f10e8481 | 1637 | Info("WriteAnalysisFile", "\n##### Analysis manager: %s wrote to file <%s>\n", mgr->GetName(),analysisFile.Data()); |
c57f56b7 | 1638 | } |
1639 | Bool_t copy = kTRUE; | |
1640 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
1641 | if (copy) { | |
1642 | CdWork(); | |
1643 | TString workdir = gGrid->GetHomeDirectory(); | |
1644 | workdir += fGridWorkingDir; | |
f10e8481 | 1645 | Info("CreateJDL", "\n##### Copying file <%s> containing your initialized analysis manager to your alien workspace", analysisFile.Data()); |
1646 | if (FileExists(analysisFile)) gGrid->Rm(analysisFile); | |
1647 | TFile::Cp(Form("file:%s",analysisFile.Data()), Form("alien://%s/%s", workdir.Data(),analysisFile.Data())); | |
c57f56b7 | 1648 | } |
1649 | } | |
1650 | ||
1651 | //______________________________________________________________________________ | |
1652 | void AliAnalysisAlien::WriteAnalysisMacro() | |
1653 | { | |
1654 | // Write the analysis macro that will steer the analysis in grid mode. | |
1655 | if (!TestBit(AliAnalysisGrid::kSubmit)) { | |
1656 | ofstream out; | |
1657 | out.open(fAnalysisMacro.Data(), ios::out); | |
1658 | if (!out.good()) { | |
1659 | Error("WriteAnalysisMacro", "could not open file %s for writing", fAnalysisMacro.Data()); | |
1660 | return; | |
1661 | } | |
1662 | TString func = fAnalysisMacro; | |
1663 | TString type = "ESD"; | |
1664 | TString comment = "// Analysis using "; | |
1665 | if (TObject::TestBit(AliAnalysisGrid::kUseESD)) comment += "ESD"; | |
1666 | if (TObject::TestBit(AliAnalysisGrid::kUseAOD)) { | |
1667 | type = "AOD"; | |
1668 | comment += "AOD"; | |
1669 | } | |
0df6ccf2 | 1670 | if (type!="AOD" && fFriendChainName!="") { |
1671 | Error("WriteAnalysisMacro", "Friend chain can be attached only to AOD"); | |
1672 | return; | |
1673 | } | |
c57f56b7 | 1674 | if (TObject::TestBit(AliAnalysisGrid::kUseMC)) comment += "/MC"; |
1675 | else comment += " data"; | |
1676 | out << "const char *anatype = \"" << type.Data() << "\";" << endl << endl; | |
1677 | func.ReplaceAll(".C", ""); | |
1678 | out << "void " << func.Data() << "()" << endl; | |
1679 | out << "{" << endl; | |
1680 | out << comment.Data() << endl; | |
1681 | out << "// Automatically generated analysis steering macro executed in grid subjobs" << endl << endl; | |
f7498086 | 1682 | out << " TStopwatch timer;" << endl; |
1683 | out << " timer.Start();" << endl << endl; | |
c57f56b7 | 1684 | out << "// load base root libraries" << endl; |
1685 | out << " gSystem->Load(\"libTree\");" << endl; | |
1686 | out << " gSystem->Load(\"libGeom\");" << endl; | |
1687 | out << " gSystem->Load(\"libVMC\");" << endl; | |
1688 | out << " gSystem->Load(\"libPhysics\");" << endl << endl; | |
57377eb5 | 1689 | out << "// Load analysis framework libraries" << endl; |
4e5c5506 | 1690 | if (!fPackages) { |
4e5c5506 | 1691 | out << " gSystem->Load(\"libSTEERBase\");" << endl; |
1692 | out << " gSystem->Load(\"libESD\");" << endl; | |
1693 | out << " gSystem->Load(\"libAOD\");" << endl; | |
1694 | out << " gSystem->Load(\"libANALYSIS\");" << endl; | |
57377eb5 | 1695 | out << " gSystem->Load(\"libANALYSISalice\");" << endl; |
1696 | out << " gSystem->Load(\"libCORRFW\");" << endl << endl; | |
4e5c5506 | 1697 | } else { |
4e5c5506 | 1698 | TIter next(fPackages); |
1699 | TObject *obj; | |
57377eb5 | 1700 | TString pkgname; |
1701 | Bool_t hasSTEERBase = kFALSE; | |
1702 | Bool_t hasESD = kFALSE; | |
1703 | Bool_t hasAOD = kFALSE; | |
1704 | Bool_t hasANALYSIS = kFALSE; | |
1705 | Bool_t hasANALYSISalice = kFALSE; | |
1706 | Bool_t hasCORRFW = kFALSE; | |
1707 | while ((obj=next())) { | |
1708 | pkgname = obj->GetName(); | |
4478e6f1 | 1709 | if (pkgname == "STEERBase" || |
1710 | pkgname == "STEERBase.par") hasSTEERBase = kTRUE; | |
1711 | if (pkgname == "ESD" || | |
1712 | pkgname == "ESD.par") hasESD = kTRUE; | |
1713 | if (pkgname == "AOD" || | |
1714 | pkgname == "AOD.par") hasAOD = kTRUE; | |
1715 | if (pkgname == "ANALYSIS" || | |
1716 | pkgname == "ANALYSIS.par") hasANALYSIS = kTRUE; | |
1717 | if (pkgname == "ANALYSISalice" || | |
1718 | pkgname == "ANALYSISalice.par") hasANALYSISalice = kTRUE; | |
1719 | if (pkgname == "CORRFW" || | |
1720 | pkgname == "CORRFW.par") hasCORRFW = kTRUE; | |
57377eb5 | 1721 | } |
1722 | if (!hasSTEERBase) out << " gSystem->Load(\"libSTEERBase\");" << endl; | |
1723 | else out << " if (!SetupPar(\"STEERBase\")) return;" << endl; | |
1724 | if (!hasESD) out << " gSystem->Load(\"libESD\");" << endl; | |
1725 | else out << " if (!SetupPar(\"ESD\")) return;" << endl; | |
1726 | if (!hasAOD) out << " gSystem->Load(\"libAOD\");" << endl; | |
1727 | else out << " if (!SetupPar(\"AOD\")) return;" << endl; | |
1728 | if (!hasANALYSIS) out << " gSystem->Load(\"libANALYSIS\");" << endl; | |
1729 | else out << " if (!SetupPar(\"ANALYSIS\")) return;" << endl; | |
1730 | if (!hasANALYSISalice) out << " gSystem->Load(\"libANALYSISalice\");" << endl; | |
1731 | else out << " if (!SetupPar(\"ANALYSISalice\")) return;" << endl; | |
1732 | if (!hasCORRFW) out << " gSystem->Load(\"libCORRFW\");" << endl << endl; | |
1733 | else out << " if (!SetupPar(\"CORRFW\")) return;" << endl << endl; | |
1734 | out << "// Compile other par packages" << endl; | |
1735 | next.Reset(); | |
fcc9bb6f | 1736 | while ((obj=next())) { |
1737 | pkgname = obj->GetName(); | |
4478e6f1 | 1738 | if (pkgname == "STEERBase" || |
1739 | pkgname == "STEERBase.par" || | |
1740 | pkgname == "ESD" || | |
1741 | pkgname == "ESD.par" || | |
1742 | pkgname == "AOD" || | |
1743 | pkgname == "AOD.par" || | |
1744 | pkgname == "ANALYSIS" || | |
1745 | pkgname == "ANALYSIS.par" || | |
1746 | pkgname == "ANALYSISalice" || | |
1747 | pkgname == "ANALYSISalice.par" || | |
1748 | pkgname == "CORRFW" || | |
1749 | pkgname == "CORRFW.par") continue; | |
4e5c5506 | 1750 | out << " if (!SetupPar(\"" << obj->GetName() << "\")) return;" << endl; |
fcc9bb6f | 1751 | } |
4e5c5506 | 1752 | } |
43da816a | 1753 | out << "// include path" << endl; |
1754 | if (fIncludePath.Length()) out << " gSystem->AddIncludePath(\"" << fIncludePath.Data() << "\");" << endl; | |
1755 | out << " gSystem->AddIncludePath(\"-I$ALICE_ROOT/include\");" << endl << endl; | |
6da75e0b | 1756 | if (fAdditionalLibs.Length()) { |
1757 | out << "// Add aditional AliRoot libraries" << endl; | |
1758 | TObjArray *list = fAdditionalLibs.Tokenize(" "); | |
1759 | TIter next(list); | |
1760 | TObjString *str; | |
1761 | while((str=(TObjString*)next())) { | |
1762 | if (str->GetString().Contains(".so")) | |
1763 | out << " gSystem->Load(\"" << str->GetString().Data() << "\");" << endl; | |
1764 | } | |
1765 | if (list) delete list; | |
1766 | } | |
1767 | out << endl; | |
c57f56b7 | 1768 | out << "// analysis source to be compiled at runtime (if any)" << endl; |
1769 | if (fAnalysisSource.Length()) { | |
1770 | TObjArray *list = fAnalysisSource.Tokenize(" "); | |
1771 | TIter next(list); | |
1772 | TObjString *str; | |
1773 | while((str=(TObjString*)next())) { | |
1774 | out << " gROOT->ProcessLine(\".L " << str->GetString().Data() << "+g\");" << endl; | |
1775 | } | |
1776 | if (list) delete list; | |
1777 | } | |
1778 | out << endl; | |
1779 | out << "// connect to AliEn and make the chain" << endl; | |
1780 | out << " if (!TGrid::Connect(\"alien://\")) return;" << endl; | |
1781 | if (IsUsingTags()) { | |
1782 | out << " TChain *chain = CreateChainFromTags(\"wn.xml\", anatype);" << endl << endl; | |
1783 | } else { | |
76535c98 | 1784 | if(fFriendChainName!="AliAOD.VertexingHF.root") { |
1785 | out << " TChain *chain = CreateChain(\"wn.xml\", anatype);" << endl << endl; | |
1786 | } else { | |
1787 | out << " // Check if the macro to create the chain was provided" << endl; | |
1788 | out << " if (gSystem->AccessPathName(\"MakeAODInputChain.C\")) {" << endl; | |
1789 | out << " ::Error(\"" << func.Data() << "\", \"File MakeAODInputChain.C not provided. Aborting.\");" << endl; | |
1790 | out << " return;" << endl; | |
1791 | out << " }" << endl; | |
1792 | out << " gROOT->LoadMacro(\"MakeAODInputChain.C\");" << endl; | |
1793 | out << " TChain *chain = MakeAODInputChain(\"wn.xml\",\"none\");" << endl << endl; | |
1794 | } | |
c57f56b7 | 1795 | } |
1796 | out << "// read the analysis manager from file" << endl; | |
f10e8481 | 1797 | TString analysisFile = fExecutable; |
1798 | analysisFile.ReplaceAll(".sh", ".root"); | |
1799 | out << " TFile *file = TFile::Open(\"" << analysisFile << "\");" << endl; | |
c57f56b7 | 1800 | out << " if (!file) return;" << endl; |
1801 | out << " TIter nextkey(file->GetListOfKeys());" << endl; | |
1802 | out << " AliAnalysisManager *mgr = 0;" << endl; | |
1803 | out << " TKey *key;" << endl; | |
1804 | out << " while ((key=(TKey*)nextkey())) {" << endl; | |
1805 | out << " if (!strcmp(key->GetClassName(), \"AliAnalysisManager\"))" << endl; | |
1806 | out << " mgr = (AliAnalysisManager*)file->Get(key->GetName());" << endl; | |
1807 | out << " };" << endl; | |
1808 | out << " if (!mgr) {" << endl; | |
f10e8481 | 1809 | out << " ::Error(\"" << func.Data() << "\", \"No analysis manager found in file" << analysisFile <<"\");" << endl; |
c57f56b7 | 1810 | out << " return;" << endl; |
1811 | out << " }" << endl << endl; | |
1812 | out << " mgr->PrintStatus();" << endl; | |
1813 | out << " mgr->StartAnalysis(\"localfile\", chain);" << endl; | |
f7498086 | 1814 | out << " timer.Stop();" << endl; |
1815 | out << " timer.Print();" << endl; | |
c57f56b7 | 1816 | out << "}" << endl << endl; |
1817 | if (IsUsingTags()) { | |
1818 | out << "TChain* CreateChainFromTags(const char *xmlfile, const char *type=\"ESD\")" << endl; | |
1819 | out << "{" << endl; | |
1820 | out << "// Create a chain using tags from the xml file." << endl; | |
1821 | out << " TAlienCollection* coll = TAlienCollection::Open(xmlfile);" << endl; | |
1822 | out << " if (!coll) {" << endl; | |
1823 | out << " ::Error(\"CreateChainFromTags\", \"Cannot create an AliEn collection from %s\", xmlfile);" << endl; | |
1824 | out << " return NULL;" << endl; | |
1825 | out << " }" << endl; | |
1826 | out << " TGridResult* tagResult = coll->GetGridResult(\"\",kFALSE,kFALSE);" << endl; | |
1827 | out << " AliTagAnalysis *tagAna = new AliTagAnalysis(type);" << endl; | |
1828 | out << " tagAna->ChainGridTags(tagResult);" << endl << endl; | |
1829 | out << " AliRunTagCuts *runCuts = new AliRunTagCuts();" << endl; | |
1830 | out << " AliLHCTagCuts *lhcCuts = new AliLHCTagCuts();" << endl; | |
1831 | out << " AliDetectorTagCuts *detCuts = new AliDetectorTagCuts();" << endl; | |
1832 | out << " AliEventTagCuts *evCuts = new AliEventTagCuts();" << endl; | |
1833 | out << " // Check if the cuts configuration file was provided" << endl; | |
1834 | out << " if (!gSystem->AccessPathName(\"ConfigureCuts.C\")) {" << endl; | |
1835 | out << " gROOT->LoadMacro(\"ConfigureCuts.C\");" << endl; | |
1836 | out << " ConfigureCuts(runCuts, lhcCuts, detCuts, evCuts);" << endl; | |
1837 | out << " }" << endl; | |
0df6ccf2 | 1838 | if (fFriendChainName=="") { |
1839 | out << " TChain *chain = tagAna->QueryTags(runCuts, lhcCuts, detCuts, evCuts);" << endl; | |
1840 | } else { | |
1841 | out << " TString tmpColl=\"tmpCollection.xml\";" << endl; | |
1842 | out << " tagAna->CreateXMLCollection(tmpColl.Data(),runCuts, lhcCuts, detCuts, evCuts);" << endl; | |
1843 | out << " TChain *chain = CreateChain(tmpColl.Data(),type);" << endl; | |
1844 | } | |
c57f56b7 | 1845 | out << " if (!chain || !chain->GetNtrees()) return NULL;" << endl; |
1846 | out << " chain->ls();" << endl; | |
1847 | out << " return chain;" << endl; | |
fcc9bb6f | 1848 | out << "}" << endl << endl; |
c57f56b7 | 1849 | if (gSystem->AccessPathName("ConfigureCuts.C")) { |
1850 | TString msg = "\n##### You may want to provide a macro ConfigureCuts.C with a method:\n"; | |
1851 | msg += " void ConfigureCuts(AliRunTagCuts *runCuts,\n"; | |
1852 | msg += " AliLHCTagCuts *lhcCuts,\n"; | |
1853 | msg += " AliDetectorTagCuts *detCuts,\n"; | |
1854 | msg += " AliEventTagCuts *evCuts)"; | |
1855 | Info("WriteAnalysisMacro", msg.Data()); | |
1856 | } | |
0df6ccf2 | 1857 | } |
1858 | if (!IsUsingTags() || fFriendChainName!="") { | |
fcc9bb6f | 1859 | out <<"//________________________________________________________________________________" << endl; |
c57f56b7 | 1860 | out << "TChain* CreateChain(const char *xmlfile, const char *type=\"ESD\")" << endl; |
1861 | out << "{" << endl; | |
1862 | out << "// Create a chain using url's from xml file" << endl; | |
1863 | out << " TString treename = type;" << endl; | |
1864 | out << " treename.ToLower();" << endl; | |
1865 | out << " treename += \"Tree\";" << endl; | |
e02fee64 | 1866 | out << " printf(\"***************************************\\n\");" << endl; |
1867 | out << " printf(\" Getting chain of trees %s\\n\", treename.Data());" << endl; | |
1868 | out << " printf(\"***************************************\\n\");" << endl; | |
c57f56b7 | 1869 | out << " TAlienCollection *coll = TAlienCollection::Open(xmlfile);" << endl; |
1870 | out << " if (!coll) {" << endl; | |
1871 | out << " ::Error(\"CreateChain\", \"Cannot create an AliEn collection from %s\", xmlfile);" << endl; | |
1872 | out << " return NULL;" << endl; | |
1873 | out << " }" << endl; | |
1874 | out << " TChain *chain = new TChain(treename);" << endl; | |
0df6ccf2 | 1875 | if(fFriendChainName!="") { |
1876 | out << " TChain *chainFriend = new TChain(treename);" << endl; | |
1877 | } | |
c57f56b7 | 1878 | out << " coll->Reset();" << endl; |
0df6ccf2 | 1879 | out << " while (coll->Next()) {" << endl; |
1880 | out << " chain->Add(coll->GetTURL(\"\"));" << endl; | |
1881 | if(fFriendChainName!="") { | |
1882 | out << " TString fileFriend=coll->GetTURL(\"\");" << endl; | |
1883 | out << " fileFriend.ReplaceAll(\"AliAOD.root\",\""<<fFriendChainName.Data()<<"\");" << endl; | |
1884 | out << " fileFriend.ReplaceAll(\"AliAODs.root\",\""<<fFriendChainName.Data()<<"\");" << endl; | |
1885 | out << " chainFriend->Add(fileFriend.Data());" << endl; | |
1886 | } | |
1887 | out << " }" << endl; | |
c57f56b7 | 1888 | out << " if (!chain->GetNtrees()) {" << endl; |
1889 | out << " ::Error(\"CreateChain\", \"No tree found from collection %s\", xmlfile);" << endl; | |
1890 | out << " return NULL;" << endl; | |
1891 | out << " }" << endl; | |
0df6ccf2 | 1892 | if(fFriendChainName!="") { |
1893 | out << " chain->AddFriend(chainFriend);" << endl; | |
1894 | } | |
c57f56b7 | 1895 | out << " return chain;" << endl; |
fcc9bb6f | 1896 | out << "}" << endl << endl; |
c57f56b7 | 1897 | } |
4e5c5506 | 1898 | if (fPackages) { |
fcc9bb6f | 1899 | out <<"//________________________________________________________________________________" << endl; |
4e5c5506 | 1900 | out << "Bool_t SetupPar(const char *package) {" << endl; |
1901 | out << "// Compile the package and set it up." << endl; | |
1902 | out << " TString pkgdir = package;" << endl; | |
1903 | out << " pkgdir.ReplaceAll(\".par\",\"\");" << endl; | |
fcc9bb6f | 1904 | out << " gSystem->Exec(Form(\"tar xvzf %s.par\", pkgdir.Data()));" << endl; |
4e5c5506 | 1905 | out << " TString cdir = gSystem->WorkingDirectory();" << endl; |
1906 | out << " gSystem->ChangeDirectory(pkgdir);" << endl; | |
1907 | out << " // Check for BUILD.sh and execute" << endl; | |
1908 | out << " if (!gSystem->AccessPathName(\"PROOF-INF/BUILD.sh\")) {" << endl; | |
1909 | out << " printf(\"*******************************\\n\");" << endl; | |
1910 | out << " printf(\"*** Building PAR archive ***\\n\");" << endl; | |
1911 | out << " printf(\"*******************************\\n\");" << endl; | |
1912 | out << " if (gSystem->Exec(\"PROOF-INF/BUILD.sh\")) {" << endl; | |
fcc9bb6f | 1913 | out << " ::Error(\"SetupPar\", \"Cannot build par archive %s\", pkgdir.Data());" << endl; |
4e5c5506 | 1914 | out << " gSystem->ChangeDirectory(cdir);" << endl; |
1915 | out << " return kFALSE;" << endl; | |
1916 | out << " }" << endl; | |
1917 | out << " } else {" << endl; | |
fcc9bb6f | 1918 | out << " ::Error(\"SetupPar\",\"Cannot access PROOF-INF/BUILD.sh for package %s\", pkgdir.Data());" << endl; |
4e5c5506 | 1919 | out << " gSystem->ChangeDirectory(cdir);" << endl; |
1920 | out << " return kFALSE;" << endl; | |
1921 | out << " }" << endl; | |
1922 | out << " // Check for SETUP.C and execute" << endl; | |
1923 | out << " if (!gSystem->AccessPathName(\"PROOF-INF/SETUP.C\")) {" << endl; | |
1924 | out << " printf(\"*******************************\\n\");" << endl; | |
1925 | out << " printf(\"*** Setup PAR archive ***\\n\");" << endl; | |
1926 | out << " printf(\"*******************************\\n\");" << endl; | |
1927 | out << " gROOT->Macro(\"PROOF-INF/SETUP.C\");" << endl; | |
1928 | out << " } else {" << endl; | |
fcc9bb6f | 1929 | out << " ::Error(\"SetupPar\",\"Cannot access PROOF-INF/SETUP.C for package %s\", pkgdir.Data());" << endl; |
4e5c5506 | 1930 | out << " gSystem->ChangeDirectory(cdir);" << endl; |
1931 | out << " return kFALSE;" << endl; | |
1932 | out << " }" << endl; | |
1933 | out << " // Restore original workdir" << endl; | |
1934 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
1935 | out << " return kTRUE;" << endl; | |
1936 | out << "}" << endl; | |
1937 | } | |
c57f56b7 | 1938 | Info("WriteAnalysisMacro", "\n##### Analysis macro to run on worker nodes <%s> written",fAnalysisMacro.Data()); |
1939 | } | |
1940 | Bool_t copy = kTRUE; | |
1941 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
1942 | if (copy) { | |
1943 | CdWork(); | |
1944 | TString workdir = gGrid->GetHomeDirectory(); | |
1945 | workdir += fGridWorkingDir; | |
1946 | if (FileExists(fAnalysisMacro)) gGrid->Rm(fAnalysisMacro); | |
1947 | if (IsUsingTags() && !gSystem->AccessPathName("ConfigureCuts.C")) { | |
1948 | if (FileExists("ConfigureCuts.C")) gGrid->Rm("ConfigureCuts.C"); | |
1949 | Info("WriteAnalysisMacro", "\n##### Copying cuts configuration macro: <ConfigureCuts.C> to your alien workspace"); | |
1950 | TFile::Cp("file:ConfigureCuts.C", Form("alien://%s/ConfigureCuts.C", workdir.Data())); | |
1951 | } | |
1952 | Info("WriteAnalysisMacro", "\n##### Copying analysis macro: <%s> to your alien workspace", fAnalysisMacro.Data()); | |
1953 | TFile::Cp(Form("file:%s",fAnalysisMacro.Data()), Form("alien://%s/%s", workdir.Data(), fAnalysisMacro.Data())); | |
1954 | } | |
1955 | } | |
1956 | ||
1957 | //______________________________________________________________________________ | |
1958 | void AliAnalysisAlien::WriteExecutable() | |
1959 | { | |
1960 | // Generate the alien executable script. | |
1961 | if (!TestBit(AliAnalysisGrid::kSubmit)) { | |
1962 | ofstream out; | |
1963 | out.open(fExecutable.Data(), ios::out); | |
1964 | if (out.bad()) { | |
5513444a | 1965 | Error("WriteExecutable", "Bad file name for executable: %s", fExecutable.Data()); |
c57f56b7 | 1966 | return; |
1967 | } | |
1968 | out << "#!/bin/bash" << endl; | |
1969 | out << "export GCLIENT_SERVER_LIST=\"pcapiserv04.cern.ch:10000|pcapiserv05.cern.ch:10000|pcapiserv06.cern.ch:10000|pcapiserv07.cern.ch:10000\"" << endl; | |
1970 | out << "echo \"=========================================\"" << endl; | |
1971 | out << "echo \"############## PATH : ##############\"" << endl; | |
1972 | out << "echo $PATH" << endl; | |
1973 | out << "echo \"############## LD_LIBRARY_PATH : ##############\"" << endl; | |
1974 | out << "echo $LD_LIBRARY_PATH" << endl; | |
1975 | out << "echo \"############## ROOTSYS : ##############\"" << endl; | |
1976 | out << "echo $ROOTSYS" << endl; | |
1977 | out << "echo \"############## which root : ##############\"" << endl; | |
1978 | out << "which root" << endl; | |
1979 | out << "echo \"############## ALICE_ROOT : ##############\"" << endl; | |
1980 | out << "echo $ALICE_ROOT" << endl; | |
1981 | out << "echo \"############## which aliroot : ##############\"" << endl; | |
1982 | out << "which aliroot" << endl; | |
1983 | out << "echo \"=========================================\"" << endl << endl; | |
1984 | // if (TestBit(AliAnalysisGrid::kTest)) out << "root "; | |
1985 | out << "root -b -q "; | |
1986 | out << fAnalysisMacro.Data() << endl << endl; | |
1987 | out << "echo \"======== " << fAnalysisMacro.Data() << " finished ========\"" << endl; | |
1988 | } | |
1989 | Bool_t copy = kTRUE; | |
1990 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
1991 | if (copy) { | |
1992 | CdWork(); | |
1993 | TString workdir = gGrid->GetHomeDirectory(); | |
923e2ca5 | 1994 | TString bindir = Form("%s/bin", workdir.Data()); |
1995 | if (!DirectoryExists(bindir)) gGrid->Mkdir(bindir); | |
c57f56b7 | 1996 | workdir += fGridWorkingDir; |
1997 | TString executable = Form("%s/bin/%s", gGrid->GetHomeDirectory(), fExecutable.Data()); | |
1998 | if (FileExists(executable)) gGrid->Rm(executable); | |
1999 | Info("CreateJDL", "\n##### Copying executable file <%s> to your AliEn bin directory", fExecutable.Data()); | |
2000 | TFile::Cp(Form("file:%s",fExecutable.Data()), Form("alien://%s", executable.Data())); | |
2001 | } | |
2002 | } | |
2003 | ||
2004 | //______________________________________________________________________________ | |
5513444a | 2005 | void AliAnalysisAlien::WriteProductionFile(const char *filename) const |
2006 | { | |
2007 | // Write the production file to be submitted by LPM manager. The format is: | |
f5e8c702 | 2008 | // First line: full_path_to_jdl estimated_no_subjobs_per_master |
5513444a | 2009 | // Next lines: full_path_to_dataset XXX (XXX is a string) |
2010 | // To submit, one has to: submit jdl XXX for all lines | |
2011 | ofstream out; | |
2012 | out.open(filename, ios::out); | |
2013 | if (out.bad()) { | |
2014 | Error("WriteProductionFile", "Bad file name: %s", filename); | |
2015 | return; | |
2016 | } | |
2017 | TString workdir = gGrid->GetHomeDirectory(); | |
2018 | workdir += fGridWorkingDir; | |
f5e8c702 | 2019 | Int_t njobspermaster = 1000*fNrunsPerMaster/fSplitMaxInputFileNumber; |
5513444a | 2020 | TString locjdl = Form("%s/%s", workdir.Data(),fJDLName.Data()); |
f5e8c702 | 2021 | out << locjdl << " " << njobspermaster << endl; |
5513444a | 2022 | Int_t nmasterjobs = fInputFiles->GetEntries(); |
2023 | for (Int_t i=0; i<nmasterjobs; i++) { | |
b5fe9cba | 2024 | out << Form("%s", fInputFiles->At(i)->GetName()) << " " << Form("%03d", i) << endl; |
5513444a | 2025 | } |
2026 | Info("WriteProductionFile", "\n##### Copying production file <%s> to your work directory", filename); | |
2027 | TFile::Cp(Form("file:%s",filename), Form("alien://%s/%s", workdir.Data(),filename)); | |
2028 | } | |
2029 | ||
2030 | //______________________________________________________________________________ | |
c57f56b7 | 2031 | void AliAnalysisAlien::WriteValidationScript() |
2032 | { | |
2033 | // Generate the alien validation script. | |
2034 | // Generate the validation script | |
2035 | TObjString *os; | |
0d5d317c | 2036 | TString validationScript = fExecutable; |
2037 | validationScript.ReplaceAll(".sh", "_validation.sh"); | |
c57f56b7 | 2038 | if (!Connect()) { |
2039 | Error("WriteValidationScript", "Alien connection required"); | |
2040 | return; | |
2041 | } | |
2042 | TString out_stream = ""; | |
2043 | if (!TestBit(AliAnalysisGrid::kTest)) out_stream = " >> stdout"; | |
2044 | if (!TestBit(AliAnalysisGrid::kSubmit)) { | |
2045 | ofstream out; | |
0d5d317c | 2046 | out.open(validationScript, ios::out); |
c57f56b7 | 2047 | out << "#!/bin/bash" << endl; |
2048 | out << "##################################################" << endl; | |
2049 | out << "validateout=`dirname $0`" << endl; | |
2050 | out << "validatetime=`date`" << endl; | |
2051 | out << "validated=\"0\";" << endl; | |
2052 | out << "error=0" << endl; | |
2053 | out << "if [ -z $validateout ]" << endl; | |
2054 | out << "then" << endl; | |
2055 | out << " validateout=\".\"" << endl; | |
2056 | out << "fi" << endl << endl; | |
2057 | out << "cd $validateout;" << endl; | |
2058 | out << "validateworkdir=`pwd`;" << endl << endl; | |
2059 | out << "echo \"*******************************************************\"" << out_stream << endl; | |
2060 | out << "echo \"* Automatically generated validation script *\"" << out_stream << endl; | |
2061 | out << "" << endl; | |
2062 | out << "echo \"* Time: $validatetime \"" << out_stream << endl; | |
2063 | out << "echo \"* Dir: $validateout\"" << out_stream << endl; | |
2064 | out << "echo \"* Workdir: $validateworkdir\"" << out_stream << endl; | |
2065 | out << "echo \"* ----------------------------------------------------*\"" << out_stream << endl; | |
2066 | out << "ls -la ./" << out_stream << endl; | |
2067 | out << "echo \"* ----------------------------------------------------*\"" << out_stream << endl << endl; | |
2068 | out << "##################################################" << endl; | |
ebec370a | 2069 | |
2070 | out << "" << endl; | |
2071 | out << "parArch=`grep -Ei \"Cannot Build the PAR Archive\" stderr`" << endl; | |
2072 | out << "segViol=`grep -Ei \"Segmentation violation\" stderr`" << endl; | |
2073 | out << "segFault=`grep -Ei \"Segmentation fault\" stderr`" << endl; | |
2074 | out << "" << endl; | |
2075 | ||
2076 | out << "if [ ! -f stderr ] ; then" << endl; | |
2077 | out << " error=1" << endl; | |
2078 | out << " echo \"* ########## Job not validated - no stderr ###\" " << out_stream << endl; | |
2079 | out << " echo \"Error = $error\" " << out_stream << endl; | |
2080 | out << "fi" << endl; | |
2081 | ||
2082 | out << "if [ \"$parArch\" != \"\" ] ; then" << endl; | |
2083 | out << " error=1" << endl; | |
2084 | out << " echo \"* ########## Job not validated - PAR archive not built ###\" " << out_stream << endl; | |
2085 | out << " echo \"$parArch\" " << out_stream << endl; | |
2086 | out << " echo \"Error = $error\" " << out_stream << endl; | |
2087 | out << "fi" << endl; | |
2088 | ||
2089 | out << "if [ \"$segViol\" != \"\" ] ; then" << endl; | |
2090 | out << " error=1" << endl; | |
2091 | out << " echo \"* ########## Job not validated - Segment. violation ###\" " << out_stream << endl; | |
2092 | out << " echo \"$segViol\" " << out_stream << endl; | |
2093 | out << " echo \"Error = $error\" " << out_stream << endl; | |
2094 | out << "fi" << endl; | |
2095 | ||
2096 | out << "if [ \"$segFault\" != \"\" ] ; then" << endl; | |
2097 | out << " error=1" << endl; | |
2098 | out << " echo \"* ########## Job not validated - Segment. fault ###\" " << out_stream << endl; | |
2099 | out << " echo \"$segFault\" " << out_stream << endl; | |
2100 | out << " echo \"Error = $error\" " << out_stream << endl; | |
2101 | out << "fi" << endl; | |
2102 | ||
2103 | // Part dedicated to the specific analyses running into the train | |
2104 | ||
c57f56b7 | 2105 | TObjArray *arr = fOutputFiles.Tokenize(" "); |
2106 | TIter next1(arr); | |
2107 | TString output_file; | |
2108 | while ((os=(TObjString*)next1())) { | |
2109 | output_file = os->GetString(); | |
2110 | Int_t index = output_file.Index("@"); | |
2111 | if (index > 0) output_file.Remove(index); | |
2112 | out << "if ! [ -f " << output_file.Data() << " ] ; then" << endl; | |
2113 | out << " error=1" << endl; | |
2114 | out << " echo \"Output file(s) not found. Job FAILED !\"" << out_stream << endl; | |
2115 | out << " echo \"Output file(s) not found. Job FAILED !\" >> stderr" << endl; | |
2116 | out << "fi" << endl; | |
2117 | } | |
2118 | delete arr; | |
923e2ca5 | 2119 | out << "if ! [ -f outputs_valid ] ; then" << endl; |
2120 | out << " error=1" << endl; | |
2121 | out << " echo \"Output files were not validated by the analysis manager\" >> stdout" << endl; | |
2122 | out << " echo \"Output files were not validated by the analysis manager\" >> stderr" << endl; | |
2123 | out << "fi" << endl; | |
2124 | ||
c57f56b7 | 2125 | out << "if [ $error = 0 ] ; then" << endl; |
2126 | out << " echo \"* ---------------- Job Validated ------------------*\"" << out_stream << endl; | |
2127 | out << "fi" << endl; | |
2128 | ||
2129 | out << "echo \"* ----------------------------------------------------*\"" << out_stream << endl; | |
2130 | out << "echo \"*******************************************************\"" << out_stream << endl; | |
2131 | out << "cd -" << endl; | |
2132 | out << "exit $error" << endl; | |
2133 | } | |
2134 | Bool_t copy = kTRUE; | |
2135 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
2136 | if (copy) { | |
2137 | CdWork(); | |
2138 | TString workdir = gGrid->GetHomeDirectory(); | |
2139 | workdir += fGridWorkingDir; | |
0d5d317c | 2140 | Info("CreateJDL", "\n##### Copying validation script <%s> to your AliEn working space", validationScript.Data()); |
2141 | if (FileExists(validationScript)) gGrid->Rm(validationScript); | |
2142 | TFile::Cp(Form("file:%s",validationScript.Data()), Form("alien://%s/%s", workdir.Data(),validationScript.Data())); | |
c57f56b7 | 2143 | } |
2144 | } |