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c57f56b7 | 1 | /************************************************************************** |
2 | * Copyright(c) 1998-2007, ALICE Experiment at CERN, All rights reserved. * | |
3 | * * | |
4 | * Author: The ALICE Off-line Project. * | |
5 | * Contributors are mentioned in the code where appropriate. * | |
6 | * * | |
7 | * Permission to use, copy, modify and distribute this software and its * | |
8 | * documentation strictly for non-commercial purposes is hereby granted * | |
9 | * without fee, provided that the above copyright notice appears in all * | |
10 | * copies and that both the copyright notice and this permission notice * | |
11 | * appear in the supporting documentation. The authors make no claims * | |
12 | * about the suitability of this software for any purpose. It is * | |
13 | * provided "as is" without express or implied warranty. * | |
14 | **************************************************************************/ | |
15 | ||
16 | // Author: Mihaela Gheata, 01/09/2008 | |
17 | ||
18 | //============================================================================== | |
19 | // AliAnalysisAlien - AliEn utility class. Provides interface for creating | |
20 | // a personalized JDL, finding and creating a dataset. | |
21 | //============================================================================== | |
22 | ||
23 | #include "Riostream.h" | |
24 | #include "TROOT.h" | |
25 | #include "TSystem.h" | |
26 | #include "TFile.h" | |
27 | #include "TObjString.h" | |
28 | #include "TObjArray.h" | |
29 | #include "TGrid.h" | |
30 | #include "TGridResult.h" | |
31 | #include "TGridCollection.h" | |
32 | #include "TGridJDL.h" | |
d2a409b2 | 33 | #include "TGridJobStatusList.h" |
34 | #include "TGridJobStatus.h" | |
c57f56b7 | 35 | #include "TFileMerger.h" |
36 | #include "AliAnalysisManager.h" | |
bb885a9e | 37 | #include "AliVEventHandler.h" |
38 | #include "AliAnalysisDataContainer.h" | |
c57f56b7 | 39 | #include "AliAnalysisAlien.h" |
40 | ||
41 | ClassImp(AliAnalysisAlien) | |
42 | ||
43 | //______________________________________________________________________________ | |
44 | AliAnalysisAlien::AliAnalysisAlien() | |
45 | :AliAnalysisGrid(), | |
46 | fGridJDL(NULL), | |
47 | fPrice(0), | |
48 | fTTL(0), | |
49 | fSplitMaxInputFileNumber(0), | |
50 | fMaxInitFailed(0), | |
51 | fMasterResubmitThreshold(0), | |
bb885a9e | 52 | fNtestFiles(0), |
319593fb | 53 | fNrunsPerMaster(0), |
16a4353c | 54 | fMaxMergeFiles(0), |
d2a409b2 | 55 | fNsubmitted(0), |
a3e84053 | 56 | fProductionMode(0), |
cd11251e | 57 | fOutputToRunNo(0), |
c57f56b7 | 58 | fRunNumbers(), |
59 | fExecutable(), | |
0a1c1f7f | 60 | fExecutableCommand(), |
c57f56b7 | 61 | fArguments(), |
631c0b05 | 62 | fExecutableArgs(), |
c57f56b7 | 63 | fAnalysisMacro(), |
64 | fAnalysisSource(), | |
65 | fAdditionalLibs(), | |
66 | fSplitMode(), | |
67 | fAPIVersion(), | |
68 | fROOTVersion(), | |
69 | fAliROOTVersion(), | |
648174cf | 70 | fExternalPackages(), |
c57f56b7 | 71 | fUser(), |
72 | fGridWorkingDir(), | |
73 | fGridDataDir(), | |
74 | fDataPattern(), | |
75 | fGridOutputDir(), | |
76 | fOutputArchive(), | |
77 | fOutputFiles(), | |
78 | fInputFormat(), | |
e7c71df0 | 79 | fDatasetName(), |
c57f56b7 | 80 | fJDLName(), |
bb885a9e | 81 | fMergeExcludes(), |
f965131e | 82 | fIncludePath(), |
bb885a9e | 83 | fCloseSE(), |
0df6ccf2 | 84 | fFriendChainName(), |
c6cb3634 | 85 | fJobTag(), |
648174cf | 86 | fOutputSingle(), |
5fce53f4 | 87 | fRunPrefix(), |
4e5c5506 | 88 | fInputFiles(0), |
89 | fPackages(0) | |
c57f56b7 | 90 | { |
91 | // Dummy ctor. | |
92 | SetDefaults(); | |
93 | } | |
94 | ||
95 | //______________________________________________________________________________ | |
96 | AliAnalysisAlien::AliAnalysisAlien(const char *name) | |
97 | :AliAnalysisGrid(name), | |
98 | fGridJDL(NULL), | |
99 | fPrice(0), | |
100 | fTTL(0), | |
101 | fSplitMaxInputFileNumber(0), | |
102 | fMaxInitFailed(0), | |
103 | fMasterResubmitThreshold(0), | |
bb885a9e | 104 | fNtestFiles(0), |
319593fb | 105 | fNrunsPerMaster(0), |
16a4353c | 106 | fMaxMergeFiles(0), |
d2a409b2 | 107 | fNsubmitted(0), |
a3e84053 | 108 | fProductionMode(0), |
cd11251e | 109 | fOutputToRunNo(0), |
c57f56b7 | 110 | fRunNumbers(), |
111 | fExecutable(), | |
0a1c1f7f | 112 | fExecutableCommand(), |
c57f56b7 | 113 | fArguments(), |
631c0b05 | 114 | fExecutableArgs(), |
c57f56b7 | 115 | fAnalysisMacro(), |
116 | fAnalysisSource(), | |
117 | fAdditionalLibs(), | |
118 | fSplitMode(), | |
119 | fAPIVersion(), | |
120 | fROOTVersion(), | |
121 | fAliROOTVersion(), | |
648174cf | 122 | fExternalPackages(), |
c57f56b7 | 123 | fUser(), |
124 | fGridWorkingDir(), | |
125 | fGridDataDir(), | |
126 | fDataPattern(), | |
127 | fGridOutputDir(), | |
128 | fOutputArchive(), | |
129 | fOutputFiles(), | |
130 | fInputFormat(), | |
e7c71df0 | 131 | fDatasetName(), |
c57f56b7 | 132 | fJDLName(), |
bb885a9e | 133 | fMergeExcludes(), |
f965131e | 134 | fIncludePath(), |
bb885a9e | 135 | fCloseSE(), |
0df6ccf2 | 136 | fFriendChainName(), |
c6cb3634 | 137 | fJobTag(), |
648174cf | 138 | fOutputSingle(), |
5fce53f4 | 139 | fRunPrefix(), |
4e5c5506 | 140 | fInputFiles(0), |
141 | fPackages(0) | |
c57f56b7 | 142 | { |
143 | // Default ctor. | |
144 | SetDefaults(); | |
145 | } | |
146 | ||
147 | //______________________________________________________________________________ | |
148 | AliAnalysisAlien::AliAnalysisAlien(const AliAnalysisAlien& other) | |
149 | :AliAnalysisGrid(other), | |
150 | fGridJDL(NULL), | |
151 | fPrice(other.fPrice), | |
152 | fTTL(other.fTTL), | |
153 | fSplitMaxInputFileNumber(other.fSplitMaxInputFileNumber), | |
154 | fMaxInitFailed(other.fMaxInitFailed), | |
155 | fMasterResubmitThreshold(other.fMasterResubmitThreshold), | |
bb885a9e | 156 | fNtestFiles(other.fNtestFiles), |
319593fb | 157 | fNrunsPerMaster(other.fNrunsPerMaster), |
16a4353c | 158 | fMaxMergeFiles(other.fMaxMergeFiles), |
d2a409b2 | 159 | fNsubmitted(other.fNsubmitted), |
a3e84053 | 160 | fProductionMode(other.fProductionMode), |
cd11251e | 161 | fOutputToRunNo(other.fOutputToRunNo), |
c57f56b7 | 162 | fRunNumbers(other.fRunNumbers), |
163 | fExecutable(other.fExecutable), | |
0a1c1f7f | 164 | fExecutableCommand(other.fExecutableCommand), |
c57f56b7 | 165 | fArguments(other.fArguments), |
631c0b05 | 166 | fExecutableArgs(other.fExecutableArgs), |
c57f56b7 | 167 | fAnalysisMacro(other.fAnalysisMacro), |
168 | fAnalysisSource(other.fAnalysisSource), | |
169 | fAdditionalLibs(other.fAdditionalLibs), | |
170 | fSplitMode(other.fSplitMode), | |
171 | fAPIVersion(other.fAPIVersion), | |
172 | fROOTVersion(other.fROOTVersion), | |
173 | fAliROOTVersion(other.fAliROOTVersion), | |
648174cf | 174 | fExternalPackages(other.fExternalPackages), |
c57f56b7 | 175 | fUser(other.fUser), |
176 | fGridWorkingDir(other.fGridWorkingDir), | |
177 | fGridDataDir(other.fGridDataDir), | |
178 | fDataPattern(other.fDataPattern), | |
179 | fGridOutputDir(other.fGridOutputDir), | |
180 | fOutputArchive(other.fOutputArchive), | |
181 | fOutputFiles(other.fOutputFiles), | |
182 | fInputFormat(other.fInputFormat), | |
e7c71df0 | 183 | fDatasetName(other.fDatasetName), |
c57f56b7 | 184 | fJDLName(other.fJDLName), |
bb885a9e | 185 | fMergeExcludes(other.fMergeExcludes), |
f965131e | 186 | fIncludePath(other.fIncludePath), |
bb885a9e | 187 | fCloseSE(other.fCloseSE), |
0df6ccf2 | 188 | fFriendChainName(other.fFriendChainName), |
c6cb3634 | 189 | fJobTag(other.fJobTag), |
648174cf | 190 | fOutputSingle(other.fOutputSingle), |
5fce53f4 | 191 | fRunPrefix(other.fRunPrefix), |
4e5c5506 | 192 | fInputFiles(0), |
193 | fPackages(0) | |
c57f56b7 | 194 | { |
195 | // Copy ctor. | |
196 | fGridJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); | |
a8739e8a | 197 | fRunRange[0] = other.fRunRange[0]; |
198 | fRunRange[1] = other.fRunRange[1]; | |
c57f56b7 | 199 | if (other.fInputFiles) { |
200 | fInputFiles = new TObjArray(); | |
201 | TIter next(other.fInputFiles); | |
202 | TObject *obj; | |
203 | while ((obj=next())) fInputFiles->Add(new TObjString(obj->GetName())); | |
204 | fInputFiles->SetOwner(); | |
205 | } | |
4e5c5506 | 206 | if (other.fPackages) { |
207 | fPackages = new TObjArray(); | |
208 | TIter next(other.fPackages); | |
209 | TObject *obj; | |
210 | while ((obj=next())) fPackages->Add(new TObjString(obj->GetName())); | |
211 | fPackages->SetOwner(); | |
212 | } | |
c57f56b7 | 213 | } |
214 | ||
215 | //______________________________________________________________________________ | |
216 | AliAnalysisAlien::~AliAnalysisAlien() | |
217 | { | |
218 | // Destructor. | |
219 | if (fGridJDL) delete fGridJDL; | |
220 | if (fInputFiles) delete fInputFiles; | |
4e5c5506 | 221 | if (fPackages) delete fPackages; |
c57f56b7 | 222 | } |
223 | ||
224 | //______________________________________________________________________________ | |
225 | AliAnalysisAlien &AliAnalysisAlien::operator=(const AliAnalysisAlien& other) | |
226 | { | |
227 | // Assignment. | |
228 | if (this != &other) { | |
229 | AliAnalysisGrid::operator=(other); | |
230 | fGridJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); | |
231 | fPrice = other.fPrice; | |
232 | fTTL = other.fTTL; | |
233 | fSplitMaxInputFileNumber = other.fSplitMaxInputFileNumber; | |
234 | fMaxInitFailed = other.fMaxInitFailed; | |
235 | fMasterResubmitThreshold = other.fMasterResubmitThreshold; | |
bb885a9e | 236 | fNtestFiles = other.fNtestFiles; |
a3e84053 | 237 | fNrunsPerMaster = other.fNrunsPerMaster; |
238 | fMaxMergeFiles = other.fMaxMergeFiles; | |
239 | fNsubmitted = other.fNsubmitted; | |
240 | fProductionMode = other.fProductionMode; | |
cd11251e | 241 | fOutputToRunNo = other.fOutputToRunNo; |
c57f56b7 | 242 | fRunNumbers = other.fRunNumbers; |
243 | fExecutable = other.fExecutable; | |
0a1c1f7f | 244 | fExecutableCommand = other.fExecutableCommand; |
c57f56b7 | 245 | fArguments = other.fArguments; |
631c0b05 | 246 | fExecutableArgs = other.fExecutableArgs; |
c57f56b7 | 247 | fAnalysisMacro = other.fAnalysisMacro; |
248 | fAnalysisSource = other.fAnalysisSource; | |
249 | fAdditionalLibs = other.fAdditionalLibs; | |
250 | fSplitMode = other.fSplitMode; | |
251 | fAPIVersion = other.fAPIVersion; | |
252 | fROOTVersion = other.fROOTVersion; | |
253 | fAliROOTVersion = other.fAliROOTVersion; | |
648174cf | 254 | fExternalPackages = other.fExternalPackages; |
c57f56b7 | 255 | fUser = other.fUser; |
256 | fGridWorkingDir = other.fGridWorkingDir; | |
257 | fGridDataDir = other.fGridDataDir; | |
258 | fDataPattern = other.fDataPattern; | |
259 | fGridOutputDir = other.fGridOutputDir; | |
260 | fOutputArchive = other.fOutputArchive; | |
261 | fOutputFiles = other.fOutputFiles; | |
262 | fInputFormat = other.fInputFormat; | |
e7c71df0 | 263 | fDatasetName = other.fDatasetName; |
c57f56b7 | 264 | fJDLName = other.fJDLName; |
bb885a9e | 265 | fMergeExcludes = other.fMergeExcludes; |
f965131e | 266 | fIncludePath = other.fIncludePath; |
bb885a9e | 267 | fCloseSE = other.fCloseSE; |
0df6ccf2 | 268 | fFriendChainName = other.fFriendChainName; |
c6cb3634 | 269 | fJobTag = other.fJobTag; |
648174cf | 270 | fOutputSingle = other.fOutputSingle; |
5fce53f4 | 271 | fRunPrefix = other.fRunPrefix; |
c57f56b7 | 272 | if (other.fInputFiles) { |
273 | fInputFiles = new TObjArray(); | |
274 | TIter next(other.fInputFiles); | |
275 | TObject *obj; | |
276 | while ((obj=next())) fInputFiles->Add(new TObjString(obj->GetName())); | |
277 | fInputFiles->SetOwner(); | |
278 | } | |
4e5c5506 | 279 | if (other.fPackages) { |
280 | fPackages = new TObjArray(); | |
281 | TIter next(other.fPackages); | |
282 | TObject *obj; | |
283 | while ((obj=next())) fPackages->Add(new TObjString(obj->GetName())); | |
284 | fPackages->SetOwner(); | |
285 | } | |
c57f56b7 | 286 | } |
287 | return *this; | |
288 | } | |
289 | ||
f965131e | 290 | //______________________________________________________________________________ |
291 | void AliAnalysisAlien::AddIncludePath(const char *path) | |
292 | { | |
293 | // Add include path in the remote analysis macro. | |
294 | TString p(path); | |
295 | if (p.Contains("-I")) fIncludePath += Form("%s ", path); | |
296 | else fIncludePath += Form("-I%s ", path); | |
297 | } | |
298 | ||
c57f56b7 | 299 | //______________________________________________________________________________ |
300 | void AliAnalysisAlien::AddRunNumber(Int_t run) | |
301 | { | |
302 | // Add a run number to the list of runs to be processed. | |
303 | if (fRunNumbers.Length()) fRunNumbers += " "; | |
5fce53f4 | 304 | fRunNumbers += Form("%s%d", fRunPrefix.Data(), run); |
c57f56b7 | 305 | } |
306 | ||
ee75cfc3 | 307 | //______________________________________________________________________________ |
308 | void AliAnalysisAlien::AddRunNumber(const char* run) | |
309 | { | |
310 | // Add a run number to the list of runs to be processed. | |
311 | if (fRunNumbers.Length()) fRunNumbers += " "; | |
312 | fRunNumbers += run; | |
313 | } | |
314 | ||
c57f56b7 | 315 | //______________________________________________________________________________ |
316 | void AliAnalysisAlien::AddDataFile(const char *lfn) | |
317 | { | |
318 | // Adds a data file to the input to be analysed. The file should be a valid LFN | |
319 | // or point to an existing file in the alien workdir. | |
320 | if (!fInputFiles) fInputFiles = new TObjArray(); | |
321 | fInputFiles->Add(new TObjString(lfn)); | |
322 | } | |
648174cf | 323 | |
324 | //______________________________________________________________________________ | |
325 | void AliAnalysisAlien::AddExternalPackage(const char *package) | |
326 | { | |
327 | // Adds external packages w.r.t to the default ones (root,aliroot and gapi) | |
328 | if (fExternalPackages) fExternalPackages += " "; | |
329 | fExternalPackages += package; | |
330 | } | |
331 | ||
c57f56b7 | 332 | //______________________________________________________________________________ |
333 | Bool_t AliAnalysisAlien::Connect() | |
334 | { | |
335 | // Try to connect to AliEn. User needs a valid token and /tmp/gclient_env_$UID sourced. | |
336 | if (gGrid && gGrid->IsConnected()) return kTRUE; | |
337 | if (!gSystem->Getenv("alien_API_USER")) { | |
338 | Error("Connect", "Make sure you:\n 1. Have called: alien-token-init <username> today\n 2. Have sourced /tmp/gclient_env_%s", | |
339 | gSystem->Getenv("UID")); | |
340 | return kFALSE; | |
341 | } | |
342 | if (!gGrid) { | |
343 | Info("Connect", "Trying to connect to AliEn ..."); | |
344 | TGrid::Connect("alien://"); | |
345 | } | |
346 | if (!gGrid || !gGrid->IsConnected()) { | |
347 | Error("Connect", "Did not managed to connect to AliEn. Make sure you have a valid token."); | |
348 | return kFALSE; | |
349 | } | |
350 | fUser = gGrid->GetUser(); | |
351 | Info("Connect", "\n##### Connected to AliEn as user %s. Setting analysis user to <%s>", fUser.Data(), fUser.Data()); | |
352 | return kTRUE; | |
353 | } | |
354 | ||
355 | //______________________________________________________________________________ | |
356 | void AliAnalysisAlien::CdWork() | |
357 | { | |
358 | // Check validity of alien workspace. Create directory if possible. | |
359 | if (!Connect()) { | |
360 | Error("CdWork", "Alien connection required"); | |
361 | return; | |
362 | } | |
363 | TString homedir = gGrid->GetHomeDirectory(); | |
364 | TString workdir = homedir + fGridWorkingDir; | |
923e2ca5 | 365 | if (DirectoryExists(workdir)) { |
366 | gGrid->Cd(workdir); | |
367 | return; | |
368 | } | |
369 | // Work directory not existing - create it | |
370 | gGrid->Cd(homedir); | |
371 | if (gGrid->Mkdir(workdir)) { | |
372 | gGrid->Cd(fGridWorkingDir); | |
373 | Info("CreateJDL", "\n##### Created alien working directory %s", fGridWorkingDir.Data()); | |
374 | } else { | |
375 | Warning("CreateJDL", "Working directory %s cannot be created.\n Using %s instead.", | |
376 | workdir.Data(), homedir.Data()); | |
377 | fGridWorkingDir = ""; | |
378 | } | |
c57f56b7 | 379 | } |
380 | ||
381 | //______________________________________________________________________________ | |
382 | Bool_t AliAnalysisAlien::CheckInputData() | |
383 | { | |
384 | // Check validity of input data. If necessary, create xml files. | |
a8739e8a | 385 | if (!fInputFiles && !fRunNumbers.Length() && !fRunRange[0]) { |
d2a409b2 | 386 | if (!fGridDataDir.Length()) { |
387 | Error("CkeckInputData", "AliEn path to base data directory must be set.\n = Use: SetGridDataDir()"); | |
388 | return kFALSE; | |
389 | } | |
390 | Info("CheckInputData", "Analysis will make a single xml for base data directory %s",fGridDataDir.Data()); | |
391 | return kTRUE; | |
c57f56b7 | 392 | } |
393 | // Process declared files | |
394 | Bool_t is_collection = kFALSE; | |
395 | Bool_t is_xml = kFALSE; | |
396 | Bool_t use_tags = kFALSE; | |
397 | Bool_t checked = kFALSE; | |
398 | CdWork(); | |
399 | TString file; | |
400 | TString workdir = gGrid->GetHomeDirectory(); | |
401 | workdir += fGridWorkingDir; | |
402 | if (fInputFiles) { | |
403 | TObjString *objstr; | |
404 | TIter next(fInputFiles); | |
405 | while ((objstr=(TObjString*)next())) { | |
406 | file = workdir; | |
407 | file += "/"; | |
408 | file += objstr->GetString(); | |
409 | // Store full lfn path | |
410 | if (FileExists(file)) objstr->SetString(file); | |
411 | else { | |
412 | file = objstr->GetName(); | |
413 | if (!FileExists(objstr->GetName())) { | |
414 | Error("CheckInputData", "Data file %s not found or not in your working dir: %s", | |
415 | objstr->GetName(), workdir.Data()); | |
416 | return kFALSE; | |
417 | } | |
418 | } | |
419 | Bool_t iscoll, isxml, usetags; | |
420 | CheckDataType(file, iscoll, isxml, usetags); | |
421 | if (!checked) { | |
422 | checked = kTRUE; | |
423 | is_collection = iscoll; | |
424 | is_xml = isxml; | |
425 | use_tags = usetags; | |
426 | TObject::SetBit(AliAnalysisGrid::kUseTags, use_tags); | |
427 | } else { | |
428 | if ((iscoll != is_collection) || (isxml != is_xml) || (usetags != use_tags)) { | |
429 | Error("CheckInputData", "Some conflict was found in the types of inputs"); | |
430 | return kFALSE; | |
431 | } | |
432 | } | |
433 | } | |
434 | } | |
435 | // Process requested run numbers | |
a8739e8a | 436 | if (!fRunNumbers.Length() && !fRunRange[0]) return kTRUE; |
c57f56b7 | 437 | // Check validity of alien data directory |
438 | if (!fGridDataDir.Length()) { | |
439 | Error("CkeckInputData", "AliEn path to base data directory must be set.\n = Use: SetGridDataDir()"); | |
440 | return kFALSE; | |
441 | } | |
923e2ca5 | 442 | if (!DirectoryExists(fGridDataDir)) { |
c57f56b7 | 443 | Error("CheckInputData", "Data directory %s not existing.", fGridDataDir.Data()); |
444 | return kFALSE; | |
445 | } | |
446 | if (is_collection) { | |
447 | Error("CheckInputData", "You are using raw AliEn collections as input. Cannot process run numbers."); | |
448 | return kFALSE; | |
449 | } | |
450 | ||
451 | if (checked && !is_xml) { | |
452 | Error("CheckInputData", "Cannot mix processing of full runs with non-xml files"); | |
453 | return kFALSE; | |
454 | } | |
455 | // Check validity of run number(s) | |
456 | TObjArray *arr; | |
457 | TObjString *os; | |
319593fb | 458 | Int_t nruns = 0; |
904f9f5f | 459 | TString schunk, schunk2; |
c57f56b7 | 460 | TString path; |
461 | if (!checked) { | |
462 | checked = kTRUE; | |
463 | use_tags = fDataPattern.Contains("tag"); | |
464 | TObject::SetBit(AliAnalysisGrid::kUseTags, use_tags); | |
465 | } | |
466 | if (use_tags != fDataPattern.Contains("tag")) { | |
467 | Error("CheckInputData", "Cannot mix input files using/not using tags"); | |
468 | return kFALSE; | |
469 | } | |
470 | if (fRunNumbers.Length()) { | |
a8739e8a | 471 | Info("CheckDataType", "Using supplied run numbers (run ranges are ignored)"); |
c57f56b7 | 472 | arr = fRunNumbers.Tokenize(" "); |
473 | TIter next(arr); | |
474 | while ((os=(TObjString*)next())) { | |
475 | path = Form("%s/%s ", fGridDataDir.Data(), os->GetString().Data()); | |
923e2ca5 | 476 | if (!DirectoryExists(path)) { |
477 | Warning("CheckInputData", "Run number %s not found in path: <%s>", os->GetString().Data(), path.Data()); | |
a8739e8a | 478 | continue; |
c57f56b7 | 479 | } |
480 | path = Form("%s/%s.xml", workdir.Data(),os->GetString().Data()); | |
481 | TString msg = "\n##### file: "; | |
482 | msg += path; | |
483 | msg += " type: xml_collection;"; | |
484 | if (use_tags) msg += " using_tags: Yes"; | |
485 | else msg += " using_tags: No"; | |
486 | Info("CheckDataType", msg.Data()); | |
319593fb | 487 | if (fNrunsPerMaster<2) { |
d2a409b2 | 488 | AddDataFile(Form("%s.xml", os->GetString().Data())); |
319593fb | 489 | } else { |
490 | nruns++; | |
491 | if (((nruns-1)%fNrunsPerMaster) == 0) { | |
492 | schunk = os->GetString(); | |
493 | } | |
494 | if ((nruns%fNrunsPerMaster)!=0 && os!=arr->Last()) continue; | |
495 | schunk += Form("_%s.xml", os->GetString().Data()); | |
d2a409b2 | 496 | AddDataFile(schunk); |
319593fb | 497 | } |
c57f56b7 | 498 | } |
499 | delete arr; | |
a8739e8a | 500 | } else { |
501 | Info("CheckDataType", "Using run range [%d, %d]", fRunRange[0], fRunRange[1]); | |
502 | for (Int_t irun=fRunRange[0]; irun<=fRunRange[1]; irun++) { | |
5fce53f4 | 503 | path = Form("%s/%s%d ", fGridDataDir.Data(), fRunPrefix.Data(), irun); |
923e2ca5 | 504 | if (!DirectoryExists(path)) { |
505 | // Warning("CheckInputData", "Run number %d not found in path: <%s>", irun, path.Data()); | |
a8739e8a | 506 | continue; |
507 | } | |
5fce53f4 | 508 | path = Form("%s/%s%d.xml", workdir.Data(),fRunPrefix.Data(),irun); |
a8739e8a | 509 | TString msg = "\n##### file: "; |
510 | msg += path; | |
511 | msg += " type: xml_collection;"; | |
512 | if (use_tags) msg += " using_tags: Yes"; | |
513 | else msg += " using_tags: No"; | |
514 | Info("CheckDataType", msg.Data()); | |
319593fb | 515 | if (fNrunsPerMaster<2) { |
5fce53f4 | 516 | AddDataFile(Form("%s%d.xml",fRunPrefix.Data(),irun)); |
319593fb | 517 | } else { |
518 | nruns++; | |
519 | if (((nruns-1)%fNrunsPerMaster) == 0) { | |
5fce53f4 | 520 | schunk = Form("%s%d", fRunPrefix.Data(),irun); |
319593fb | 521 | } |
904f9f5f | 522 | schunk2 = Form("_%s%d.xml", fRunPrefix.Data(), irun); |
319593fb | 523 | if ((nruns%fNrunsPerMaster)!=0 && irun != fRunRange[1]) continue; |
904f9f5f | 524 | schunk += schunk2; |
d2a409b2 | 525 | AddDataFile(schunk); |
319593fb | 526 | } |
a8739e8a | 527 | } |
904f9f5f | 528 | if (!fInputFiles) { |
529 | schunk += schunk2; | |
530 | AddDataFile(schunk); | |
531 | } | |
c57f56b7 | 532 | } |
533 | return kTRUE; | |
534 | } | |
535 | ||
536 | //______________________________________________________________________________ | |
537 | Bool_t AliAnalysisAlien::CreateDataset(const char *pattern) | |
538 | { | |
539 | // Create dataset for the grid data directory + run number. | |
540 | if (TestBit(AliAnalysisGrid::kOffline)) return kFALSE; | |
541 | if (!Connect()) { | |
542 | Error("CreateDataset", "Cannot create dataset with no grid connection"); | |
543 | return kFALSE; | |
544 | } | |
545 | ||
546 | // Cd workspace | |
547 | CdWork(); | |
548 | TString workdir = gGrid->GetHomeDirectory(); | |
549 | workdir += fGridWorkingDir; | |
550 | ||
551 | // Compose the 'find' command arguments | |
552 | TString command; | |
553 | TString options = "-x collection "; | |
bb885a9e | 554 | if (TestBit(AliAnalysisGrid::kTest)) options += Form("-l %d ", fNtestFiles); |
c57f56b7 | 555 | TString conditions = ""; |
556 | ||
557 | TString file; | |
558 | TString path; | |
319593fb | 559 | Int_t nruns = 0; |
904f9f5f | 560 | TString schunk, schunk2; |
ab254fd1 | 561 | TGridCollection *cbase=0, *cadd=0; |
d2a409b2 | 562 | if (!fRunNumbers.Length() && !fRunRange[0]) { |
563 | if (fInputFiles && fInputFiles->GetEntries()) return kTRUE; | |
564 | // Make a single data collection from data directory. | |
565 | path = fGridDataDir; | |
923e2ca5 | 566 | if (!DirectoryExists(path)) { |
d2a409b2 | 567 | Error("CreateDataset", "Path to data directory %s not valid",fGridDataDir.Data()); |
568 | return kFALSE; | |
569 | } | |
923e2ca5 | 570 | // CdWork(); |
d2a409b2 | 571 | if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml"; |
572 | else file = Form("%s.xml", gSystem->BaseName(path)); | |
14d25f30 | 573 | if (gSystem->AccessPathName(file) || TestBit(AliAnalysisGrid::kTest)) { |
d2a409b2 | 574 | command = "find "; |
575 | command += options; | |
576 | command += path; | |
577 | command += " "; | |
578 | command += pattern; | |
579 | command += conditions; | |
84fcd93f | 580 | printf("command: %s\n", command.Data()); |
d2a409b2 | 581 | TGridResult *res = gGrid->Command(command); |
582 | if (res) delete res; | |
583 | // Write standard output to file | |
584 | gROOT->ProcessLine(Form("gGrid->Stdout(); > %s", file.Data())); | |
585 | } | |
586 | if (!TestBit(AliAnalysisGrid::kTest) && !FileExists(file)) { | |
587 | // Copy xml file to alien space | |
588 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); | |
589 | if (!FileExists(file)) { | |
590 | Error("CreateDataset", "Command %s did NOT succeed", command.Data()); | |
591 | return kFALSE; | |
592 | } | |
593 | // Update list of files to be processed. | |
594 | } | |
595 | AddDataFile(Form("%s/%s", workdir.Data(), file.Data())); | |
596 | return kTRUE; | |
597 | } | |
c57f56b7 | 598 | // Several runs |
a8739e8a | 599 | if (fRunNumbers.Length()) { |
600 | TObjArray *arr = fRunNumbers.Tokenize(" "); | |
601 | TObjString *os; | |
602 | TIter next(arr); | |
603 | while ((os=(TObjString*)next())) { | |
604 | path = Form("%s/%s ", fGridDataDir.Data(), os->GetString().Data()); | |
923e2ca5 | 605 | if (!DirectoryExists(path)) continue; |
606 | // CdWork(); | |
a8739e8a | 607 | if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml"; |
608 | else file = Form("%s.xml", os->GetString().Data()); | |
319593fb | 609 | // If local collection file does not exist, create it via 'find' command. |
610 | if (gSystem->AccessPathName(file)) { | |
611 | command = "find "; | |
612 | command += options; | |
613 | command += path; | |
614 | command += pattern; | |
615 | command += conditions; | |
616 | TGridResult *res = gGrid->Command(command); | |
617 | if (res) delete res; | |
618 | // Write standard output to file | |
619 | gROOT->ProcessLine(Form("gGrid->Stdout(); > %s", file.Data())); | |
620 | } | |
a8739e8a | 621 | if (TestBit(AliAnalysisGrid::kTest)) break; |
319593fb | 622 | // Check if there is one run per master job. |
623 | if (fNrunsPerMaster<2) { | |
624 | if (FileExists(file)) { | |
625 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", file.Data()); | |
626 | continue; | |
627 | } | |
628 | // Copy xml file to alien space | |
629 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); | |
630 | if (!FileExists(file)) { | |
631 | Error("CreateDataset", "Command %s did NOT succeed", command.Data()); | |
632 | delete arr; | |
633 | return kFALSE; | |
634 | } | |
635 | } else { | |
636 | nruns++; | |
637 | if (((nruns-1)%fNrunsPerMaster) == 0) { | |
638 | schunk = os->GetString(); | |
639 | cbase = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
640 | } else { | |
641 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
84fcd93f | 642 | printf(" Merging collection <%s> into masterjob input...\n", file.Data()); |
319593fb | 643 | cbase->Add(cadd); |
644 | delete cadd; | |
645 | } | |
646 | if ((nruns%fNrunsPerMaster)!=0 && os!=arr->Last()) { | |
647 | continue; | |
648 | } | |
649 | schunk += Form("_%s.xml", os->GetString().Data()); | |
650 | if (FileExists(schunk)) { | |
651 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", schunk.Data()); | |
652 | continue; | |
653 | } | |
84fcd93f | 654 | printf("Exporting merged collection <%s> and copying to AliEn\n", schunk.Data()); |
319593fb | 655 | cbase->ExportXML(Form("file://%s", schunk.Data()),kFALSE,kFALSE, schunk, "Merged runs"); |
e95434bc | 656 | TFile::Cp(Form("file:%s",schunk.Data()), Form("alien://%s/%s",workdir.Data(), schunk.Data())); |
319593fb | 657 | if (!FileExists(schunk)) { |
658 | Error("CreateDataset", "Copy command did NOT succeed for %s", schunk.Data()); | |
659 | delete arr; | |
660 | return kFALSE; | |
661 | } | |
662 | } | |
a8739e8a | 663 | } |
664 | delete arr; | |
665 | } else { | |
666 | // Process a full run range. | |
667 | for (Int_t irun=fRunRange[0]; irun<=fRunRange[1]; irun++) { | |
5fce53f4 | 668 | path = Form("%s/%s%d ", fGridDataDir.Data(), fRunPrefix.Data(), irun); |
923e2ca5 | 669 | if (!DirectoryExists(path)) continue; |
670 | // CdWork(); | |
a8739e8a | 671 | if (TestBit(AliAnalysisGrid::kTest)) file = "wn.xml"; |
5fce53f4 | 672 | else file = Form("%s%d.xml", fRunPrefix.Data(), irun); |
319593fb | 673 | if (FileExists(file) && fNrunsPerMaster<2 && !TestBit(AliAnalysisGrid::kTest)) { |
a8739e8a | 674 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", file.Data()); |
675 | // gGrid->Rm(file); | |
676 | continue; | |
677 | } | |
319593fb | 678 | // If local collection file does not exist, create it via 'find' command. |
679 | if (gSystem->AccessPathName(file)) { | |
680 | command = "find "; | |
681 | command += options; | |
682 | command += path; | |
683 | command += pattern; | |
684 | command += conditions; | |
685 | TGridResult *res = gGrid->Command(command); | |
686 | if (res) delete res; | |
687 | // Write standard output to file | |
688 | gROOT->ProcessLine(Form("gGrid->Stdout(); > %s", file.Data())); | |
689 | } | |
a8739e8a | 690 | if (TestBit(AliAnalysisGrid::kTest)) break; |
319593fb | 691 | // Check if there is one run per master job. |
692 | if (fNrunsPerMaster<2) { | |
693 | if (FileExists(file)) { | |
694 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", file.Data()); | |
695 | continue; | |
696 | } | |
697 | // Copy xml file to alien space | |
698 | TFile::Cp(Form("file:%s",file.Data()), Form("alien://%s/%s",workdir.Data(), file.Data())); | |
699 | if (!FileExists(file)) { | |
700 | Error("CreateDataset", "Command %s did NOT succeed", command.Data()); | |
701 | return kFALSE; | |
702 | } | |
703 | } else { | |
704 | nruns++; | |
95e5b448 | 705 | // Check if the collection for the chunk exist locally. |
706 | Int_t nchunk = (nruns-1)/fNrunsPerMaster; | |
707 | if (FileExists(fInputFiles->At(nchunk)->GetName())) continue; | |
84fcd93f | 708 | printf(" Merging collection <%s> into %d runs chunk...\n",file.Data(),fNrunsPerMaster); |
319593fb | 709 | if (((nruns-1)%fNrunsPerMaster) == 0) { |
904f9f5f | 710 | schunk = Form("%s%d", fRunPrefix.Data(), irun); |
319593fb | 711 | cbase = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); |
712 | } else { | |
713 | cadd = (TGridCollection*)gROOT->ProcessLine(Form("new TAlienCollection(\"%s\", 1000000);",file.Data())); | |
714 | cbase->Add(cadd); | |
715 | delete cadd; | |
716 | } | |
904f9f5f | 717 | schunk2 = Form("%s_%s%d.xml", schunk.Data(), fRunPrefix.Data(), irun); |
718 | if ((nruns%fNrunsPerMaster)!=0 && irun!=fRunRange[1] && schunk2 != fInputFiles->Last()->GetName()) { | |
319593fb | 719 | continue; |
720 | } | |
904f9f5f | 721 | schunk = schunk2; |
319593fb | 722 | if (FileExists(schunk)) { |
723 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping creation...", schunk.Data()); | |
724 | continue; | |
725 | } | |
84fcd93f | 726 | printf("Exporting merged collection <%s> and copying to AliEn.\n", schunk.Data()); |
319593fb | 727 | cbase->ExportXML(Form("file://%s", schunk.Data()),kFALSE,kFALSE, schunk, "Merged runs"); |
95e5b448 | 728 | if (FileExists(schunk)) { |
729 | Info("CreateDataset", "\n##### Dataset %s exist. Skipping copy...", schunk.Data()); | |
730 | continue; | |
731 | } | |
319593fb | 732 | TFile::Cp(Form("file:%s",schunk.Data()), Form("alien://%s/%s",workdir.Data(), schunk.Data())); |
733 | if (!FileExists(schunk)) { | |
734 | Error("CreateDataset", "Copy command did NOT succeed for %s", schunk.Data()); | |
735 | return kFALSE; | |
736 | } | |
737 | } | |
c57f56b7 | 738 | } |
a8739e8a | 739 | } |
c57f56b7 | 740 | return kTRUE; |
741 | } | |
742 | ||
743 | //______________________________________________________________________________ | |
744 | Bool_t AliAnalysisAlien::CreateJDL() | |
745 | { | |
746 | // Generate a JDL file according to current settings. The name of the file is | |
747 | // specified by fJDLName. | |
748 | Bool_t error = kFALSE; | |
749 | TObjArray *arr = 0; | |
750 | Bool_t copy = kTRUE; | |
751 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
752 | Bool_t generate = kTRUE; | |
753 | if (TestBit(AliAnalysisGrid::kTest) || TestBit(AliAnalysisGrid::kSubmit)) generate = kFALSE; | |
754 | if (!Connect()) { | |
755 | Error("CreateJDL", "Alien connection required"); | |
756 | return kFALSE; | |
757 | } | |
758 | // Check validity of alien workspace | |
759 | CdWork(); | |
760 | TString workdir = gGrid->GetHomeDirectory(); | |
761 | workdir += fGridWorkingDir; | |
762 | if (generate) { | |
763 | TObjString *os; | |
764 | if (!fInputFiles) { | |
765 | Error("CreateJDL()", "Define some input files for your analysis."); | |
766 | error = kTRUE; | |
767 | } | |
768 | // Compose list of input files | |
769 | // Check if output files were defined | |
770 | if (!fOutputFiles.Length()) { | |
771 | Error("CreateJDL", "You must define at least one output file"); | |
772 | error = kTRUE; | |
773 | } | |
774 | // Check if an output directory was defined and valid | |
775 | if (!fGridOutputDir.Length()) { | |
776 | Error("CreateJDL", "You must define AliEn output directory"); | |
777 | error = kTRUE; | |
778 | } else { | |
d2a409b2 | 779 | if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("%s/%s", workdir.Data(), fGridOutputDir.Data()); |
923e2ca5 | 780 | if (!DirectoryExists(fGridOutputDir)) { |
c57f56b7 | 781 | if (gGrid->Mkdir(fGridOutputDir)) { |
782 | Info("CreateJDL", "\n##### Created alien output directory %s", fGridOutputDir.Data()); | |
783 | } else { | |
784 | Error("CreateJDL", "Could not create alien output directory %s", fGridOutputDir.Data()); | |
5513444a | 785 | // error = kTRUE; |
c57f56b7 | 786 | } |
787 | } | |
788 | gGrid->Cd(workdir); | |
789 | } | |
790 | // Exit if any error up to now | |
791 | if (error) return kFALSE; | |
792 | // Set JDL fields | |
793 | fGridJDL->SetValue("User", Form("\"%s\"", fUser.Data())); | |
3c639fc4 | 794 | fGridJDL->SetExecutable(fExecutable); |
b5b9dee8 | 795 | if (!fArguments.IsNull()) |
796 | fGridJDL->SetArguments(fArguments, "Arguments for the executable command"); | |
c57f56b7 | 797 | // fGridJDL->SetTTL((UInt_t)fTTL); |
798 | fGridJDL->SetValue("TTL", Form("\"%d\"", fTTL)); | |
799 | if (fMaxInitFailed > 0) | |
800 | fGridJDL->SetValue("MaxInitFailed", Form("\"%d\"",fMaxInitFailed)); | |
801 | if (fSplitMaxInputFileNumber > 0) | |
802 | fGridJDL->SetValue("SplitMaxInputFileNumber", Form("\"%d\"", fSplitMaxInputFileNumber)); | |
803 | if (fSplitMode.Length()) | |
804 | fGridJDL->SetValue("Split", Form("\"%s\"", fSplitMode.Data())); | |
805 | // fGridJDL->SetSplitMode(fSplitMode, (UInt_t)fSplitMaxInputFileNumber); | |
806 | if (fAliROOTVersion.Length()) | |
807 | fGridJDL->AddToPackages("AliRoot", fAliROOTVersion); | |
808 | if (fROOTVersion.Length()) | |
809 | fGridJDL->AddToPackages("ROOT", fROOTVersion); | |
810 | if (fAPIVersion.Length()) | |
811 | fGridJDL->AddToPackages("APISCONFIG", fAPIVersion); | |
648174cf | 812 | if (!fExternalPackages.IsNull()) { |
813 | arr = fExternalPackages.Tokenize(" "); | |
814 | TIter next(arr); | |
815 | while ((os=(TObjString*)next())) { | |
816 | TString pkgname = os->GetString(); | |
817 | Int_t index = pkgname.Index("::"); | |
818 | TString pkgversion = pkgname(index+2, pkgname.Length()); | |
819 | pkgname.Remove(index); | |
820 | fGridJDL->AddToPackages(pkgname, pkgversion); | |
821 | } | |
822 | delete arr; | |
823 | } | |
c57f56b7 | 824 | fGridJDL->SetInputDataListFormat(fInputFormat); |
825 | fGridJDL->SetInputDataList("wn.xml"); | |
c57f56b7 | 826 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), fAnalysisMacro.Data())); |
f10e8481 | 827 | TString analysisFile = fExecutable; |
828 | analysisFile.ReplaceAll(".sh", ".root"); | |
829 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(),analysisFile.Data())); | |
c57f56b7 | 830 | if (IsUsingTags() && !gSystem->AccessPathName("ConfigureCuts.C")) |
831 | fGridJDL->AddToInputSandbox(Form("LF:%s/ConfigureCuts.C", workdir.Data())); | |
832 | if (fAdditionalLibs.Length()) { | |
833 | arr = fAdditionalLibs.Tokenize(" "); | |
834 | TIter next(arr); | |
835 | while ((os=(TObjString*)next())) { | |
836 | if (os->GetString().Contains(".so")) continue; | |
837 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), os->GetString().Data())); | |
838 | } | |
839 | delete arr; | |
840 | } | |
4e5c5506 | 841 | if (fPackages) { |
842 | TIter next(fPackages); | |
843 | TObject *obj; | |
844 | while ((obj=next())) | |
845 | fGridJDL->AddToInputSandbox(Form("LF:%s/%s", workdir.Data(), obj->GetName())); | |
846 | } | |
c57f56b7 | 847 | if (fOutputArchive.Length()) { |
848 | arr = fOutputArchive.Tokenize(" "); | |
849 | TIter next(arr); | |
850 | while ((os=(TObjString*)next())) | |
43da816a | 851 | if (!os->GetString().Contains("@") && fCloseSE.Length()) |
852 | fGridJDL->AddToOutputArchive(Form("%s@%s",os->GetString().Data(), fCloseSE.Data())); | |
853 | else | |
854 | fGridJDL->AddToOutputArchive(os->GetString()); | |
c57f56b7 | 855 | delete arr; |
856 | } | |
c57f56b7 | 857 | arr = fOutputFiles.Tokenize(" "); |
858 | TIter next(arr); | |
43da816a | 859 | while ((os=(TObjString*)next())) { |
e1eaf596 | 860 | // Ignore ouputs in jdl that are also in outputarchive |
861 | TString sout = os->GetString(); | |
862 | if (sout.Index("@")>0) sout.Remove(sout.Index("@")); | |
863 | if (fOutputArchive.Contains(sout)) continue; | |
43da816a | 864 | if (!os->GetString().Contains("@") && fCloseSE.Length()) |
865 | fGridJDL->AddToOutputSandbox(Form("%s@%s",os->GetString().Data(), fCloseSE.Data())); | |
866 | else | |
867 | fGridJDL->AddToOutputSandbox(os->GetString()); | |
868 | } | |
c57f56b7 | 869 | delete arr; |
870 | // fGridJDL->SetPrice((UInt_t)fPrice); | |
871 | fGridJDL->SetValue("Price", Form("\"%d\"", fPrice)); | |
0d5d317c | 872 | TString validationScript = fExecutable; |
873 | validationScript.ReplaceAll(".sh", "_validation.sh"); | |
874 | fGridJDL->SetValidationCommand(Form("%s/%s", workdir.Data(),validationScript.Data())); | |
c57f56b7 | 875 | if (fMasterResubmitThreshold) fGridJDL->SetValue("MasterResubmitThreshold", Form("\"%d%%\"", fMasterResubmitThreshold)); |
d2a409b2 | 876 | // Write a jdl with 2 input parameters: collection name and output dir name. |
877 | WriteJDL(copy); | |
c57f56b7 | 878 | } |
879 | // Copy jdl to grid workspace | |
a8739e8a | 880 | if (copy) { |
b5e4aaa7 | 881 | // Check if an output directory was defined and valid |
882 | if (!fGridOutputDir.Length()) { | |
883 | Error("CreateJDL", "You must define AliEn output directory"); | |
884 | return kFALSE; | |
885 | } else { | |
886 | if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("%s/%s", workdir.Data(), fGridOutputDir.Data()); | |
887 | if (!DirectoryExists(fGridOutputDir)) { | |
888 | if (gGrid->Mkdir(fGridOutputDir)) { | |
889 | Info("CreateJDL", "\n##### Created alien output directory %s", fGridOutputDir.Data()); | |
890 | } else { | |
891 | Error("CreateJDL", "Could not create alien output directory %s", fGridOutputDir.Data()); | |
892 | return kFALSE; | |
893 | } | |
894 | } | |
895 | gGrid->Cd(workdir); | |
896 | } | |
648174cf | 897 | if (TestBit(AliAnalysisGrid::kSubmit)) { |
898 | Info("CreateJDL", "\n##### Copying JDL file <%s> to your AliEn output directory", fJDLName.Data()); | |
899 | TString locjdl = Form("%s/%s", fGridOutputDir.Data(),fJDLName.Data()); | |
900 | if (fProductionMode) | |
901 | locjdl = Form("%s/%s", workdir.Data(),fJDLName.Data()); | |
902 | if (FileExists(locjdl)) gGrid->Rm(locjdl); | |
903 | TFile::Cp(Form("file:%s",fJDLName.Data()), Form("alien://%s", locjdl.Data())); | |
904 | } | |
c57f56b7 | 905 | if (fAdditionalLibs.Length()) { |
e7c71df0 | 906 | arr = fAdditionalLibs.Tokenize(" "); |
c57f56b7 | 907 | TObjString *os; |
908 | TIter next(arr); | |
909 | while ((os=(TObjString*)next())) { | |
c57f56b7 | 910 | if (os->GetString().Contains(".so")) continue; |
4e5c5506 | 911 | Info("CreateJDL", "\n##### Copying dependency: <%s> to your alien workspace", os->GetString().Data()); |
c57f56b7 | 912 | if (FileExists(os->GetString())) gGrid->Rm(os->GetString()); |
913 | TFile::Cp(Form("file:%s",os->GetString().Data()), Form("alien://%s/%s", workdir.Data(), os->GetString().Data())); | |
914 | } | |
915 | delete arr; | |
916 | } | |
4e5c5506 | 917 | if (fPackages) { |
918 | TIter next(fPackages); | |
919 | TObject *obj; | |
920 | while ((obj=next())) { | |
921 | Info("CreateJDL", "\n##### Copying dependency: <%s> to your alien workspace", obj->GetName()); | |
922 | TFile::Cp(Form("file:%s",obj->GetName()), Form("alien://%s/%s", workdir.Data(), obj->GetName())); | |
923 | } | |
924 | } | |
c57f56b7 | 925 | } |
926 | return kTRUE; | |
927 | } | |
928 | ||
a8739e8a | 929 | //______________________________________________________________________________ |
d2a409b2 | 930 | Bool_t AliAnalysisAlien::WriteJDL(Bool_t copy) |
a8739e8a | 931 | { |
932 | // Writes one or more JDL's corresponding to findex. If findex is negative, | |
933 | // all run numbers are considered in one go (jdl). For non-negative indices | |
934 | // they correspond to the indices in the array fInputFiles. | |
935 | if (!fInputFiles) return kFALSE; | |
936 | TObjString *os; | |
a8739e8a | 937 | TString workdir = gGrid->GetHomeDirectory(); |
938 | workdir += fGridWorkingDir; | |
d2a409b2 | 939 | |
940 | if (!fRunNumbers.Length() && !fRunRange[0]) { | |
941 | // One jdl with no parameters in case input data is specified by name. | |
a8739e8a | 942 | TIter next(fInputFiles); |
943 | while ((os=(TObjString*)next())) | |
944 | fGridJDL->AddToInputDataCollection(Form("LF:%s,nodownload", os->GetString().Data())); | |
648174cf | 945 | if (!fOutputSingle.IsNull()) |
946 | fGridJDL->SetOutputDirectory(Form("#alienfulldir#/%s",fOutputSingle.Data())); | |
947 | else | |
948 | fGridJDL->SetOutputDirectory(Form("%s/#alien_counter_03i#", fGridOutputDir.Data())); | |
a8739e8a | 949 | } else { |
d2a409b2 | 950 | // One jdl to be submitted with 2 input parameters: data collection name and output dir prefix |
951 | fGridJDL->AddToInputDataCollection(Form("LF:%s/$1,nodownload", workdir.Data())); | |
cd11251e | 952 | if (!fOutputSingle.IsNull()) { |
953 | if (!fOutputToRunNo) fGridJDL->SetOutputDirectory(Form("#alienfulldir#/%s",fOutputSingle.Data())); | |
954 | else fGridJDL->SetOutputDirectory(Form("%s/$2",fGridOutputDir.Data())); | |
955 | } else { | |
956 | fGridJDL->SetOutputDirectory(Form("%s/$2/#alien_counter_03i#", fGridOutputDir.Data())); | |
957 | } | |
a8739e8a | 958 | } |
959 | ||
960 | ||
961 | // Generate the JDL as a string | |
962 | TString sjdl = fGridJDL->Generate(); | |
963 | Int_t index; | |
964 | index = sjdl.Index("Executable"); | |
965 | if (index >= 0) sjdl.Insert(index, "\n# This is the startup script\n"); | |
966 | index = sjdl.Index("Split "); | |
648174cf | 967 | if (index >= 0) sjdl.Insert(index, "\n# We split per SE or file\n"); |
a8739e8a | 968 | index = sjdl.Index("SplitMaxInputFileNumber"); |
969 | if (index >= 0) sjdl.Insert(index, "\n# We want each subjob to get maximum this number of input files\n"); | |
970 | index = sjdl.Index("InputDataCollection"); | |
971 | if (index >= 0) sjdl.Insert(index, "# Input xml collections\n"); | |
a8739e8a | 972 | index = sjdl.Index("InputFile"); |
973 | if (index >= 0) sjdl.Insert(index, "\n# List of input files to be uploaded to wn's\n"); | |
974 | index = sjdl.Index("InputDataList "); | |
975 | if (index >= 0) sjdl.Insert(index, "\n# Collection to be processed on wn\n"); | |
976 | index = sjdl.Index("InputDataListFormat"); | |
977 | if (index >= 0) sjdl.Insert(index, "\n# Format of input data\n"); | |
978 | index = sjdl.Index("Price"); | |
979 | if (index >= 0) sjdl.Insert(index, "\n# AliEn price for this job\n"); | |
980 | index = sjdl.Index("Requirements"); | |
981 | if (index >= 0) sjdl.Insert(index, "\n# Additional requirements for the computing element\n"); | |
982 | index = sjdl.Index("Packages"); | |
983 | if (index >= 0) sjdl.Insert(index, "\n# Packages to be used\n"); | |
984 | index = sjdl.Index("User ="); | |
985 | if (index >= 0) sjdl.Insert(index, "\n# AliEn user\n"); | |
986 | index = sjdl.Index("TTL"); | |
987 | if (index >= 0) sjdl.Insert(index, "\n# Time to live for the job\n"); | |
988 | index = sjdl.Index("OutputFile"); | |
989 | if (index >= 0) sjdl.Insert(index, "\n# List of output files to be registered\n"); | |
990 | index = sjdl.Index("OutputDir"); | |
991 | if (index >= 0) sjdl.Insert(index, "\n# Output directory\n"); | |
992 | index = sjdl.Index("OutputArchive"); | |
993 | if (index >= 0) sjdl.Insert(index, "\n# Files to be archived\n"); | |
994 | index = sjdl.Index("MaxInitFailed"); | |
995 | if (index >= 0) sjdl.Insert(index, "\n# Maximum number of first failing jobs to abort the master job\n"); | |
996 | index = sjdl.Index("MasterResubmitThreshold"); | |
997 | if (index >= 0) sjdl.Insert(index, "\n# Resubmit failed jobs until DONE rate reaches this percentage\n"); | |
998 | sjdl.ReplaceAll("ValidationCommand", "Validationcommand"); | |
999 | index = sjdl.Index("Validationcommand"); | |
1000 | if (index >= 0) sjdl.Insert(index, "\n# Validation script to be run for each subjob\n"); | |
1001 | sjdl.ReplaceAll("\"LF:", "\n \"LF:"); | |
1002 | sjdl.ReplaceAll("(member", "\n (member"); | |
1003 | sjdl.ReplaceAll("\",\"VO_", "\",\n \"VO_"); | |
1004 | sjdl.ReplaceAll("{", "{\n "); | |
1005 | sjdl.ReplaceAll("};", "\n};"); | |
1006 | sjdl.ReplaceAll("{\n \n", "{\n"); | |
1007 | sjdl.ReplaceAll("\n\n", "\n"); | |
1008 | sjdl.ReplaceAll("OutputDirectory", "OutputDir"); | |
1009 | sjdl += "JDLVariables = \n{\n \"Packages\",\n \"OutputDir\"\n};\n"; | |
f60ef0ba | 1010 | sjdl.Prepend(Form("Jobtag = {\n \"comment:%s\"\n};\n", fJobTag.Data())); |
a8739e8a | 1011 | index = sjdl.Index("JDLVariables"); |
1012 | if (index >= 0) sjdl.Insert(index, "\n# JDL variables\n"); | |
1013 | // Write jdl to file | |
a8739e8a | 1014 | ofstream out; |
d2a409b2 | 1015 | out.open(fJDLName.Data(), ios::out); |
a8739e8a | 1016 | if (out.bad()) { |
d2a409b2 | 1017 | Error("CreateJDL", "Bad file name: %s", fJDLName.Data()); |
a8739e8a | 1018 | return kFALSE; |
1019 | } | |
1020 | out << sjdl << endl; | |
1021 | ||
1022 | // Copy jdl to grid workspace | |
1023 | if (!copy) { | |
1024 | Info("CreateJDL", "\n##### You may want to review jdl:%s and analysis macro:%s before running in <submit> mode", fJDLName.Data(), fAnalysisMacro.Data()); | |
1025 | } else { | |
d2a409b2 | 1026 | Info("CreateJDL", "\n##### Copying JDL file <%s> to your AliEn output directory", fJDLName.Data()); |
1027 | TString locjdl = Form("%s/%s", fGridOutputDir.Data(),fJDLName.Data()); | |
a3e84053 | 1028 | if (fProductionMode) |
b5fe9cba | 1029 | locjdl = Form("%s/%s", workdir.Data(),fJDLName.Data()); |
d2a409b2 | 1030 | if (FileExists(locjdl)) gGrid->Rm(locjdl); |
5513444a | 1031 | TFile::Cp(Form("file:%s",fJDLName.Data()), Form("alien://%s", locjdl.Data())); |
a8739e8a | 1032 | } |
1033 | return kTRUE; | |
1034 | } | |
1035 | ||
c57f56b7 | 1036 | //______________________________________________________________________________ |
5513444a | 1037 | Bool_t AliAnalysisAlien::FileExists(const char *lfn) |
c57f56b7 | 1038 | { |
1039 | // Returns true if file exists. | |
5513444a | 1040 | if (!gGrid) return kFALSE; |
c57f56b7 | 1041 | TGridResult *res = gGrid->Ls(lfn); |
1042 | if (!res) return kFALSE; | |
1043 | TMap *map = dynamic_cast<TMap*>(res->At(0)); | |
1044 | if (!map) { | |
1045 | delete res; | |
1046 | return kFALSE; | |
1047 | } | |
1048 | TObjString *objs = dynamic_cast<TObjString*>(map->GetValue("name")); | |
1049 | if (!objs || !objs->GetString().Length()) { | |
1050 | delete res; | |
1051 | return kFALSE; | |
1052 | } | |
1053 | delete res; | |
1054 | return kTRUE; | |
1055 | } | |
1056 | ||
923e2ca5 | 1057 | //______________________________________________________________________________ |
1058 | Bool_t AliAnalysisAlien::DirectoryExists(const char *dirname) | |
1059 | { | |
1060 | // Returns true if directory exists. Can be also a path. | |
1061 | if (!gGrid) return kFALSE; | |
1062 | // Check if dirname is a path | |
1063 | TString dirstripped = dirname; | |
1064 | dirstripped = dirstripped.Strip(); | |
1065 | dirstripped = dirstripped.Strip(TString::kTrailing, '/'); | |
1066 | TString dir = gSystem->BaseName(dirstripped); | |
1067 | dir += "/"; | |
1068 | TString path = gSystem->DirName(dirstripped); | |
1069 | TGridResult *res = gGrid->Ls(path, "-F"); | |
1070 | if (!res) return kFALSE; | |
1071 | TIter next(res); | |
1072 | TMap *map; | |
1073 | TObject *obj; | |
1074 | while ((map=dynamic_cast<TMap*>(next()))) { | |
1075 | obj = map->GetValue("name"); | |
1076 | if (!obj) break; | |
1077 | if (dir == obj->GetName()) { | |
1078 | delete res; | |
1079 | return kTRUE; | |
1080 | } | |
1081 | } | |
1082 | delete res; | |
1083 | return kFALSE; | |
1084 | } | |
1085 | ||
c57f56b7 | 1086 | //______________________________________________________________________________ |
1087 | void AliAnalysisAlien::CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags) | |
1088 | { | |
1089 | // Check input data type. | |
1090 | is_collection = kFALSE; | |
1091 | is_xml = kFALSE; | |
1092 | use_tags = kFALSE; | |
1093 | if (!gGrid) { | |
1094 | Error("CheckDataType", "No connection to grid"); | |
1095 | return; | |
1096 | } | |
1097 | is_collection = IsCollection(lfn); | |
1098 | TString msg = "\n##### file: "; | |
1099 | msg += lfn; | |
1100 | if (is_collection) { | |
1101 | msg += " type: raw_collection;"; | |
1102 | // special treatment for collections | |
1103 | is_xml = kFALSE; | |
1104 | // check for tag files in the collection | |
1105 | TGridResult *res = gGrid->Command(Form("listFilesFromCollection -z -v %s",lfn), kFALSE); | |
1106 | if (!res) { | |
1107 | msg += " using_tags: No (unknown)"; | |
1108 | Info("CheckDataType", msg.Data()); | |
1109 | return; | |
1110 | } | |
1111 | const char* typeStr = res->GetKey(0, "origLFN"); | |
1112 | if (!typeStr || !strlen(typeStr)) { | |
1113 | msg += " using_tags: No (unknown)"; | |
1114 | Info("CheckDataType", msg.Data()); | |
1115 | return; | |
1116 | } | |
1117 | TString file = typeStr; | |
1118 | use_tags = file.Contains(".tag"); | |
1119 | if (use_tags) msg += " using_tags: Yes"; | |
1120 | else msg += " using_tags: No"; | |
1121 | Info("CheckDataType", msg.Data()); | |
1122 | return; | |
1123 | } | |
1124 | TString slfn(lfn); | |
1125 | slfn.ToLower(); | |
1126 | is_xml = slfn.Contains(".xml"); | |
1127 | if (is_xml) { | |
1128 | // Open xml collection and check if there are tag files inside | |
1129 | msg += " type: xml_collection;"; | |
1130 | TGridCollection *coll = (TGridCollection*)gROOT->ProcessLine(Form("TAlienCollection::Open(\"alien://%s\",1);",lfn)); | |
1131 | if (!coll) { | |
1132 | msg += " using_tags: No (unknown)"; | |
1133 | Info("CheckDataType", msg.Data()); | |
1134 | return; | |
1135 | } | |
1136 | TMap *map = coll->Next(); | |
1137 | if (!map) { | |
1138 | msg += " using_tags: No (unknown)"; | |
1139 | Info("CheckDataType", msg.Data()); | |
1140 | return; | |
1141 | } | |
1142 | map = (TMap*)map->GetValue(""); | |
1143 | TString file; | |
1144 | if (map && map->GetValue("name")) file = map->GetValue("name")->GetName(); | |
1145 | use_tags = file.Contains(".tag"); | |
1146 | delete coll; | |
1147 | if (use_tags) msg += " using_tags: Yes"; | |
1148 | else msg += " using_tags: No"; | |
1149 | Info("CheckDataType", msg.Data()); | |
1150 | return; | |
1151 | } | |
1152 | use_tags = slfn.Contains(".tag"); | |
1153 | if (slfn.Contains(".root")) msg += " type: root file;"; | |
1154 | else msg += " type: unhnown file;"; | |
1155 | if (use_tags) msg += " using_tags: Yes"; | |
1156 | else msg += " using_tags: No"; | |
1157 | Info("CheckDataType", msg.Data()); | |
1158 | } | |
1159 | ||
4e5c5506 | 1160 | //______________________________________________________________________________ |
1161 | void AliAnalysisAlien::EnablePackage(const char *package) | |
1162 | { | |
1163 | // Enables a par file supposed to exist in the current directory. | |
1164 | TString pkg(package); | |
1165 | pkg.ReplaceAll(".par", ""); | |
1166 | pkg += ".par"; | |
1167 | if (gSystem->AccessPathName(pkg)) { | |
1168 | Error("EnablePackage", "Package %s not found", pkg.Data()); | |
1169 | return; | |
1170 | } | |
1171 | if (!TObject::TestBit(AliAnalysisGrid::kUsePars)) | |
1172 | Info("EnablePackage", "AliEn plugin will use .par packages"); | |
1173 | TObject::SetBit(AliAnalysisGrid::kUsePars, kTRUE); | |
1174 | if (!fPackages) { | |
1175 | fPackages = new TObjArray(); | |
1176 | fPackages->SetOwner(); | |
1177 | } | |
1178 | fPackages->Add(new TObjString(pkg)); | |
1179 | } | |
1180 | ||
d2a409b2 | 1181 | //______________________________________________________________________________ |
1182 | const char *AliAnalysisAlien::GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone) | |
1183 | { | |
1184 | // Get job status for all jobs with jobid>jobidstart. | |
1185 | static char mstatus[20]; | |
1186 | mstatus[0] = '\0'; | |
1187 | nrunning = 0; | |
1188 | nwaiting = 0; | |
1189 | nerror = 0; | |
1190 | ndone = 0; | |
1191 | TGridJobStatusList *list = gGrid->Ps(""); | |
1192 | if (!list) return mstatus; | |
1193 | Int_t nentries = list->GetSize(); | |
1194 | TGridJobStatus *status; | |
1195 | Int_t pid; | |
1196 | for (Int_t ijob=0; ijob<nentries; ijob++) { | |
1197 | status = (TGridJobStatus *)list->At(ijob); | |
1198 | pid = gROOT->ProcessLine(Form("atoi(((TAlienJobStatus*)0x%lx)->GetKey(\"queueId\"));", (ULong_t)status)); | |
1199 | if (pid<jobidstart) continue; | |
1200 | if (pid == lastid) { | |
1201 | gROOT->ProcessLine(Form("sprintf((char*)0x%lx,((TAlienJobStatus*)0x%lx)->GetKey(\"status\"));",(ULong_t)mstatus, (ULong_t)status)); | |
1202 | } | |
1203 | switch (status->GetStatus()) { | |
1204 | case TGridJobStatus::kWAITING: | |
1205 | nwaiting++; break; | |
1206 | case TGridJobStatus::kRUNNING: | |
1207 | nrunning++; break; | |
1208 | case TGridJobStatus::kABORTED: | |
1209 | case TGridJobStatus::kFAIL: | |
1210 | case TGridJobStatus::kUNKNOWN: | |
1211 | nerror++; break; | |
1212 | case TGridJobStatus::kDONE: | |
1213 | ndone++; | |
1214 | } | |
1215 | } | |
1216 | list->Delete(); | |
1217 | delete list; | |
1218 | return mstatus; | |
1219 | } | |
1220 | ||
c57f56b7 | 1221 | //______________________________________________________________________________ |
1222 | Bool_t AliAnalysisAlien::IsCollection(const char *lfn) const | |
1223 | { | |
1224 | // Returns true if file is a collection. Functionality duplicated from | |
1225 | // TAlien::Type() because we don't want to directly depend on TAlien. | |
1226 | if (!gGrid) { | |
1227 | Error("IsCollection", "No connection to grid"); | |
1228 | return kFALSE; | |
1229 | } | |
1230 | TGridResult *res = gGrid->Command(Form("type -z %s",lfn),kFALSE); | |
1231 | if (!res) return kFALSE; | |
1232 | const char* typeStr = res->GetKey(0, "type"); | |
1233 | if (!typeStr || !strlen(typeStr)) return kFALSE; | |
1234 | if (!strcmp(typeStr, "collection")) return kTRUE; | |
1235 | delete res; | |
1236 | return kFALSE; | |
1237 | } | |
1238 | ||
fe2d7fc2 | 1239 | //______________________________________________________________________________ |
1240 | Bool_t AliAnalysisAlien::IsSingleOutput() const | |
1241 | { | |
1242 | // Check if single-ouput option is on. | |
1243 | return (!fOutputSingle.IsNull()); | |
1244 | } | |
1245 | ||
16a4353c | 1246 | //______________________________________________________________________________ |
1247 | void AliAnalysisAlien::Print(Option_t *) const | |
1248 | { | |
1249 | // Print current plugin settings. | |
84fcd93f | 1250 | printf("### AliEn analysis plugin current settings ###\n"); |
1251 | printf("= Production mode:______________________________ %d\n", fProductionMode); | |
1252 | printf("= Version of API requested: ____________________ %s\n", fAPIVersion.Data()); | |
1253 | printf("= Version of ROOT requested: ___________________ %s\n", fROOTVersion.Data()); | |
1254 | printf("= Version of AliRoot requested: ________________ %s\n", fAliROOTVersion.Data()); | |
16a4353c | 1255 | if (fUser.Length()) |
84fcd93f | 1256 | printf("= User running the plugin: _____________________ %s\n", fUser.Data()); |
1257 | printf("= Grid workdir relative to user $HOME: _________ %s\n", fGridWorkingDir.Data()); | |
1258 | printf("= Grid output directory relative to workdir: ___ %s\n", fGridOutputDir.Data()); | |
1259 | printf("= Data base directory path requested: __________ %s\n", fGridDataDir.Data()); | |
1260 | printf("= Data search pattern: _________________________ %s\n", fDataPattern.Data()); | |
1261 | printf("= Input data format: ___________________________ %s\n", fInputFormat.Data()); | |
16a4353c | 1262 | if (fRunNumbers.Length()) |
84fcd93f | 1263 | printf("= Run numbers to be processed: _________________ %s\n", fRunNumbers.Data()); |
16a4353c | 1264 | if (fRunRange[0]) |
5fce53f4 | 1265 | printf("= Run range to be processed: ___________________ %s%d-%s%d\n", fRunPrefix.Data(), fRunRange[0], fRunPrefix.Data(), fRunRange[1]); |
16a4353c | 1266 | if (!fRunRange[0] && !fRunNumbers.Length()) { |
1267 | TIter next(fInputFiles); | |
1268 | TObject *obj; | |
1269 | TString list; | |
1270 | while ((obj=next())) list += obj->GetName(); | |
84fcd93f | 1271 | printf("= Input files to be processed: _________________ %s\n", list.Data()); |
16a4353c | 1272 | } |
1273 | if (TestBit(AliAnalysisGrid::kTest)) | |
84fcd93f | 1274 | printf("= Number of input files used in test mode: _____ %d\n", fNtestFiles); |
1275 | printf("= List of output files to be registered: _______ %s\n", fOutputFiles.Data()); | |
1276 | printf("= List of outputs going to be archived: ________ %s\n", fOutputArchive.Data()); | |
1277 | printf("= List of outputs that should not be merged: ___ %s\n", fMergeExcludes.Data()); | |
1278 | printf("=====================================================================\n"); | |
1279 | printf("= Job price: ___________________________________ %d\n", fPrice); | |
1280 | printf("= Time to live (TTL): __________________________ %d\n", fTTL); | |
1281 | printf("= Max files per subjob: ________________________ %d\n", fSplitMaxInputFileNumber); | |
16a4353c | 1282 | if (fMaxInitFailed>0) |
84fcd93f | 1283 | printf("= Max number of subjob fails to kill: __________ %d\n", fMaxInitFailed); |
16a4353c | 1284 | if (fMasterResubmitThreshold>0) |
84fcd93f | 1285 | printf("= Resubmit master job if failed subjobs >_______ %d\n", fMasterResubmitThreshold); |
319593fb | 1286 | if (fNrunsPerMaster>0) |
84fcd93f | 1287 | printf("= Number of runs per master job: _______________ %d\n", fNrunsPerMaster); |
1288 | printf("= Number of files in one chunk to be merged: ___ %d\n", fMaxMergeFiles); | |
b5b9dee8 | 1289 | printf("= Name of the generated execution script: ______ %s\n", fExecutable.Data()); |
1290 | printf("= Executable command: __________________________ %s\n", fExecutableCommand.Data()); | |
16a4353c | 1291 | if (fArguments.Length()) |
84fcd93f | 1292 | printf("= Arguments for the execution script: __________ %s\n",fArguments.Data()); |
631c0b05 | 1293 | if (fExecutableArgs.Length()) |
1294 | printf("= Arguments after macro name in executable______ %s\n",fExecutableArgs.Data()); | |
84fcd93f | 1295 | printf("= Name of the generated analysis macro: ________ %s\n",fAnalysisMacro.Data()); |
1296 | printf("= User analysis files to be deployed: __________ %s\n",fAnalysisSource.Data()); | |
1297 | printf("= Additional libs to be loaded or souces to be compiled runtime: <%s>\n",fAdditionalLibs.Data()); | |
1298 | printf("= Master jobs split mode: ______________________ %s\n",fSplitMode.Data()); | |
16a4353c | 1299 | if (fDatasetName) |
84fcd93f | 1300 | printf("= Custom name for the dataset to be created: ___ %s\n", fDatasetName.Data()); |
1301 | printf("= Name of the generated JDL: ___________________ %s\n", fJDLName.Data()); | |
16a4353c | 1302 | if (fIncludePath.Data()) |
84fcd93f | 1303 | printf("= Include path for runtime task compilation: ___ %s\n", fIncludePath.Data()); |
16a4353c | 1304 | if (fCloseSE.Length()) |
84fcd93f | 1305 | printf("= Force job outputs to storage element: ________ %s\n", fCloseSE.Data()); |
16a4353c | 1306 | if (fFriendChainName.Length()) |
84fcd93f | 1307 | printf("= Open friend chain file on worker: ____________ %s\n", fFriendChainName.Data()); |
16a4353c | 1308 | if (fPackages) { |
1309 | TIter next(fPackages); | |
1310 | TObject *obj; | |
1311 | TString list; | |
1312 | while ((obj=next())) list += obj->GetName(); | |
84fcd93f | 1313 | printf("= Par files to be used: ________________________ %s\n", list.Data()); |
16a4353c | 1314 | } |
1315 | } | |
1316 | ||
c57f56b7 | 1317 | //______________________________________________________________________________ |
1318 | void AliAnalysisAlien::SetDefaults() | |
1319 | { | |
1320 | // Set default values for everything. What cannot be filled will be left empty. | |
1321 | if (fGridJDL) delete fGridJDL; | |
1322 | fGridJDL = (TGridJDL*)gROOT->ProcessLine("new TAlienJDL()"); | |
1323 | fPrice = 1; | |
1324 | fTTL = 30000; | |
1325 | fSplitMaxInputFileNumber = 100; | |
1326 | fMaxInitFailed = 0; | |
1327 | fMasterResubmitThreshold = 0; | |
bb885a9e | 1328 | fNtestFiles = 10; |
a8739e8a | 1329 | fRunRange[0] = 0; |
1330 | fRunRange[1] = 0; | |
319593fb | 1331 | fNrunsPerMaster = 1; |
16a4353c | 1332 | fMaxMergeFiles = 100; |
c57f56b7 | 1333 | fRunNumbers = ""; |
1334 | fExecutable = "analysis.sh"; | |
0a1c1f7f | 1335 | fExecutableCommand = "root -b -q"; |
c57f56b7 | 1336 | fArguments = ""; |
631c0b05 | 1337 | fExecutableArgs = ""; |
c57f56b7 | 1338 | fAnalysisMacro = "myAnalysis.C"; |
1339 | fAnalysisSource = ""; | |
1340 | fAdditionalLibs = ""; | |
1341 | fSplitMode = "se"; | |
1342 | fAPIVersion = ""; | |
1343 | fROOTVersion = ""; | |
1344 | fAliROOTVersion = ""; | |
1345 | fUser = ""; // Your alien user name | |
1346 | fGridWorkingDir = ""; | |
1347 | fGridDataDir = ""; // Can be like: /alice/sim/PDC_08a/LHC08c9/ | |
1348 | fDataPattern = "*AliESDs.root"; // Can be like: *AliESDs.root, */pass1/*AliESDs.root, ... | |
0df6ccf2 | 1349 | fFriendChainName = ""; |
c57f56b7 | 1350 | fGridOutputDir = "output"; |
1351 | fOutputArchive = "log_archive.zip:stdout,stderr root_archive.zip:*.root"; | |
1352 | fOutputFiles = ""; // Like "AliAODs.root histos.root" | |
1353 | fInputFormat = "xml-single"; | |
1354 | fJDLName = "analysis.jdl"; | |
c6cb3634 | 1355 | fJobTag = "Automatically generated analysis JDL"; |
bb885a9e | 1356 | fMergeExcludes = ""; |
c57f56b7 | 1357 | } |
1358 | ||
1359 | //______________________________________________________________________________ | |
1360 | Bool_t AliAnalysisAlien::MergeOutputs() | |
1361 | { | |
1362 | // Merge analysis outputs existing in the AliEn space. | |
1363 | if (TestBit(AliAnalysisGrid::kTest)) return kTRUE; | |
1364 | if (TestBit(AliAnalysisGrid::kOffline)) return kFALSE; | |
1365 | if (!Connect()) { | |
1366 | Error("MergeOutputs", "Cannot merge outputs without grid connection. Terminate will NOT be executed"); | |
1367 | return kFALSE; | |
1368 | } | |
1369 | // Get the output path | |
d2a409b2 | 1370 | if (!fGridOutputDir.Contains("/")) fGridOutputDir = Form("/%s/%s/%s", gGrid->GetHomeDirectory(), fGridWorkingDir.Data(), fGridOutputDir.Data()); |
923e2ca5 | 1371 | if (!DirectoryExists(fGridOutputDir)) { |
c57f56b7 | 1372 | Error("MergeOutputs", "Grid output directory %s not found. Terminate() will NOT be executed", fGridOutputDir.Data()); |
1373 | return kFALSE; | |
1374 | } | |
1375 | if (!fOutputFiles.Length()) { | |
1376 | Error("MergeOutputs", "No output file names defined. Are you running the right AliAnalysisAlien configuration ?"); | |
1377 | return kFALSE; | |
1378 | } | |
1379 | TObjArray *list = fOutputFiles.Tokenize(" "); | |
1380 | TIter next(list); | |
1381 | TObjString *str; | |
1382 | TString command; | |
1383 | TString output_file; | |
16a4353c | 1384 | TString output_chunk; |
1385 | TString previous_chunk; | |
1386 | Int_t count_chunk = 0; | |
1387 | Int_t count_zero = fMaxMergeFiles; | |
c57f56b7 | 1388 | Bool_t merged = kTRUE; |
1389 | while((str=(TObjString*)next())) { | |
1390 | output_file = str->GetString(); | |
1391 | Int_t index = output_file.Index("@"); | |
1392 | if (index > 0) output_file.Remove(index); | |
319593fb | 1393 | // Skip already merged outputs |
1394 | if (!gSystem->AccessPathName(output_file)) { | |
1395 | Info("MergeOutputs", "Output file <%s> found. Not merging again.", output_file.Data()); | |
1396 | continue; | |
1397 | } | |
bb885a9e | 1398 | if (fMergeExcludes.Length() && |
1399 | fMergeExcludes.Contains(output_file.Data())) continue; | |
16a4353c | 1400 | // Perform a 'find' command in the output directory, looking for registered outputs |
d2a409b2 | 1401 | command = Form("find %s/ *%s", fGridOutputDir.Data(), output_file.Data()); |
84fcd93f | 1402 | printf("command: %s\n", command.Data()); |
c57f56b7 | 1403 | TGridResult *res = gGrid->Command(command); |
1404 | if (!res) continue; | |
1405 | TFileMerger *fm = 0; | |
1406 | TIter nextmap(res); | |
ab254fd1 | 1407 | TMap *map = 0; |
16a4353c | 1408 | previous_chunk = ""; |
1409 | count_chunk = 0; | |
319593fb | 1410 | // Check if there is a merge operation to resume |
1411 | output_chunk = output_file; | |
1412 | output_chunk.ReplaceAll(".root", "_*.root"); | |
1413 | if (!gSystem->Exec(Form("ls %s", output_chunk.Data()))) { | |
1414 | while (1) { | |
1415 | for (Int_t counter=0; counter<fMaxMergeFiles; counter++) map = (TMap*)nextmap(); | |
1416 | if (!map) { | |
1417 | Error("MergeOutputs", "Cannot resume merging for <%s>, nentries=%d", output_file.Data(), res->GetSize()); | |
1418 | delete res; | |
1419 | return kFALSE; | |
1420 | } | |
1421 | output_chunk = output_file; | |
1422 | output_chunk.ReplaceAll(".root", Form("_%04d.root", count_chunk)); | |
84fcd93f | 1423 | printf("%s\n", output_chunk.Data()); |
319593fb | 1424 | count_chunk++; |
1425 | if (gSystem->AccessPathName(output_chunk)) continue; | |
1426 | // Merged file with chunks up to <count_chunk> found | |
84fcd93f | 1427 | printf("Resume merging of <%s> from <%s>\n", output_file.Data(), output_chunk.Data()); |
319593fb | 1428 | previous_chunk = output_chunk; |
1429 | break; | |
1430 | } | |
1431 | } | |
16a4353c | 1432 | count_zero = fMaxMergeFiles; |
c57f56b7 | 1433 | while ((map=(TMap*)nextmap())) { |
16a4353c | 1434 | // Loop 'find' results and get next LFN |
1435 | if (count_zero == fMaxMergeFiles) { | |
1436 | // First file in chunk - create file merger and add previous chunk if any. | |
1437 | fm = new TFileMerger(kFALSE); | |
1438 | fm->SetFastMethod(kTRUE); | |
1439 | if (previous_chunk.Length()) fm->AddFile(previous_chunk.Data()); | |
1440 | output_chunk = output_file; | |
1441 | output_chunk.ReplaceAll(".root", Form("_%04d.root", count_chunk)); | |
1442 | } | |
1443 | // If last file found, put merged results in the output file | |
1444 | if (map == res->Last()) output_chunk = output_file; | |
c57f56b7 | 1445 | TObjString *objs = dynamic_cast<TObjString*>(map->GetValue("turl")); |
1446 | if (!objs || !objs->GetString().Length()) { | |
16a4353c | 1447 | // Nothing found - skip this output |
c57f56b7 | 1448 | delete res; |
16a4353c | 1449 | delete fm; |
1450 | break; | |
1451 | } | |
1452 | // Add file to be merged and decrement chunk counter. | |
1453 | fm->AddFile(objs->GetString()); | |
1454 | count_zero--; | |
1455 | if (count_zero==0 || map == res->Last()) { | |
1456 | fm->OutputFile(output_chunk); | |
1457 | if (!fm->GetMergeList() || !fm->GetMergeList()->GetSize()) { | |
1458 | // Nothing found - skip this output | |
1459 | Warning("MergeOutputs", "No <%s> files found.", output_file.Data()); | |
1460 | delete res; | |
1461 | delete fm; | |
1462 | break; | |
1463 | } | |
1464 | // Merge the outputs, then go to next chunk | |
1465 | if (!fm->Merge()) { | |
1466 | Error("MergeOutputs", "Could not merge all <%s> files", output_file.Data()); | |
1467 | delete res; | |
1468 | delete fm; | |
1469 | merged = kFALSE; | |
1470 | break; | |
1471 | } else { | |
1472 | Info("MergeOutputs", "\n##### Merged %d output files to <%s>", fm->GetMergeList()->GetSize(), output_chunk.Data()); | |
319593fb | 1473 | gSystem->Unlink(previous_chunk); |
16a4353c | 1474 | } |
1475 | if (map == res->Last()) { | |
1476 | delete res; | |
1477 | delete fm; | |
1478 | break; | |
1479 | } | |
1480 | count_chunk++; | |
1481 | count_zero = fMaxMergeFiles; | |
1482 | previous_chunk = output_chunk; | |
c57f56b7 | 1483 | } |
c57f56b7 | 1484 | } |
c57f56b7 | 1485 | } |
1486 | if (!merged) { | |
1487 | Error("MergeOutputs", "Terminate() will NOT be executed"); | |
1488 | } | |
1489 | return merged; | |
1490 | } | |
1491 | ||
bb885a9e | 1492 | //______________________________________________________________________________ |
1493 | void AliAnalysisAlien::SetDefaultOutputs(Bool_t flag) | |
1494 | { | |
1495 | // Use the output files connected to output containers from the analysis manager | |
1496 | // rather than the files defined by SetOutputFiles | |
1497 | if (flag && !TObject::TestBit(AliAnalysisGrid::kDefaultOutputs)) | |
1498 | Info("SetDefaultOutputs", "Plugin will use the output files taken from \ | |
1499 | analysis manager"); | |
1500 | TObject::SetBit(AliAnalysisGrid::kDefaultOutputs, flag); | |
1501 | } | |
1502 | ||
5513444a | 1503 | //______________________________________________________________________________ |
1504 | Bool_t AliAnalysisAlien::StartAnalysis(Long64_t /*nentries*/, Long64_t /*firstEntry*/) | |
c57f56b7 | 1505 | { |
1506 | // Start remote grid analysis. | |
1507 | ||
43da816a | 1508 | // Check if output files have to be taken from the analysis manager |
1509 | if (TestBit(AliAnalysisGrid::kDefaultOutputs)) { | |
1510 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); | |
1511 | if (!mgr || !mgr->IsInitialized()) { | |
1512 | Error("StartAnalysis", "You need an initialized analysis manager for this"); | |
5513444a | 1513 | return kFALSE; |
43da816a | 1514 | } |
1515 | fOutputFiles = ""; | |
1516 | TIter next(mgr->GetOutputs()); | |
1517 | AliAnalysisDataContainer *output; | |
1518 | while ((output=(AliAnalysisDataContainer*)next())) { | |
1519 | const char *filename = output->GetFileName(); | |
1520 | if (!(strcmp(filename, "default"))) { | |
1521 | if (!mgr->GetOutputEventHandler()) continue; | |
1522 | filename = mgr->GetOutputEventHandler()->GetOutputFileName(); | |
1523 | } | |
84fcd93f | 1524 | if (fOutputFiles.Contains(filename)) continue; |
43da816a | 1525 | if (fOutputFiles.Length()) fOutputFiles += " "; |
1526 | fOutputFiles += filename; | |
1527 | } | |
c07b9ce2 | 1528 | // Add extra files registered to the analysis manager |
1529 | if (mgr->GetExtraFiles().Length()) { | |
1530 | if (fOutputFiles.Length()) fOutputFiles += " "; | |
1531 | fOutputFiles += mgr->GetExtraFiles(); | |
84fcd93f | 1532 | } |
43da816a | 1533 | } |
f7b1cbc2 | 1534 | // if (!fCloseSE.Length()) fCloseSE = gSystem->Getenv("alien_CLOSE_SE"); |
c57f56b7 | 1535 | if (TestBit(AliAnalysisGrid::kOffline)) { |
1536 | Info("StartAnalysis","\n##### OFFLINE MODE ##### Files to be used in GRID are produced but not copied \ | |
1537 | \n there nor any job run. You can revise the JDL and analysis \ | |
1538 | \n macro then run the same in \"submit\" mode."); | |
1539 | } else if (TestBit(AliAnalysisGrid::kTest)) { | |
1540 | Info("StartAnalysis","\n##### LOCAL MODE ##### Your analysis will be run locally on a subset of the requested \ | |
1541 | \n dataset."); | |
1542 | } else if (TestBit(AliAnalysisGrid::kSubmit)) { | |
1543 | Info("StartAnalysis","\n##### SUBMIT MODE ##### Files required by your analysis are copied to your grid working \ | |
1544 | \n space and job submitted."); | |
1545 | } else if (TestBit(AliAnalysisGrid::kMerge)) { | |
1546 | Info("StartAnalysis","\n##### MERGE MODE ##### The registered outputs of the analysis will be merged"); | |
5513444a | 1547 | return kTRUE; |
c57f56b7 | 1548 | } else { |
1549 | Info("StartAnalysis","\n##### FULL ANALYSIS MODE ##### Producing needed files and submitting your analysis job..."); | |
1550 | } | |
1551 | ||
1552 | if (!Connect()) { | |
1553 | Error("StartAnalysis", "Cannot start grid analysis without grid connection"); | |
5513444a | 1554 | return kFALSE; |
16a4353c | 1555 | } |
1556 | Print(); | |
c57f56b7 | 1557 | if (!CheckInputData()) { |
1558 | Error("StartAnalysis", "There was an error in preprocessing your requested input data"); | |
5513444a | 1559 | return kFALSE; |
c57f56b7 | 1560 | } |
1561 | CreateDataset(fDataPattern); | |
1562 | WriteAnalysisFile(); | |
1563 | WriteAnalysisMacro(); | |
1564 | WriteExecutable(); | |
1565 | WriteValidationScript(); | |
5513444a | 1566 | if (!CreateJDL()) return kFALSE; |
1567 | if (TestBit(AliAnalysisGrid::kOffline)) return kFALSE; | |
c57f56b7 | 1568 | if (TestBit(AliAnalysisGrid::kTest)) { |
1569 | // Locally testing the analysis | |
1570 | Info("StartAnalysis", "\n_______________________________________________________________________ \ | |
1571 | \n Running analysis script in a daughter shell as on a worker node \ | |
1572 | \n_______________________________________________________________________"); | |
1573 | TObjArray *list = fOutputFiles.Tokenize(" "); | |
1574 | TIter next(list); | |
1575 | TObjString *str; | |
1576 | TString output_file; | |
1577 | while((str=(TObjString*)next())) { | |
1578 | output_file = str->GetString(); | |
1579 | Int_t index = output_file.Index("@"); | |
1580 | if (index > 0) output_file.Remove(index); | |
43da816a | 1581 | if (!gSystem->AccessPathName(output_file)) gSystem->Exec(Form("rm %s", output_file.Data())); |
c57f56b7 | 1582 | } |
1583 | delete list; | |
1584 | gSystem->Exec(Form("bash %s 2>stderr", fExecutable.Data())); | |
0d5d317c | 1585 | TString validationScript = fExecutable; |
1586 | validationScript.ReplaceAll(".sh", "_validation.sh"); | |
1587 | gSystem->Exec(Form("bash %s",validationScript.Data())); | |
c57f56b7 | 1588 | // gSystem->Exec("cat stdout"); |
5513444a | 1589 | return kFALSE; |
c57f56b7 | 1590 | } |
5513444a | 1591 | // Check if submitting is managed by LPM manager |
a3e84053 | 1592 | if (fProductionMode) { |
5513444a | 1593 | TString prodfile = fJDLName; |
1594 | prodfile.ReplaceAll(".jdl", ".prod"); | |
1595 | WriteProductionFile(prodfile); | |
1596 | Info("StartAnalysis", "Job submitting is managed by LPM. Rerun in terminate mode after jobs finished."); | |
1597 | return kFALSE; | |
1598 | } | |
a8739e8a | 1599 | // Submit AliEn job(s) |
d2a409b2 | 1600 | gGrid->Cd(fGridOutputDir); |
a8739e8a | 1601 | TGridResult *res; |
c57f56b7 | 1602 | TString jobID = ""; |
d2a409b2 | 1603 | if (!fRunNumbers.Length() && !fRunRange[0]) { |
dd74a515 | 1604 | // Submit a given xml or a set of runs |
a8739e8a | 1605 | res = gGrid->Command(Form("submit %s", fJDLName.Data())); |
84fcd93f | 1606 | printf("*************************** %s\n",Form("submit %s", fJDLName.Data())); |
a8739e8a | 1607 | if (res) { |
1608 | const char *cjobId = res->GetKey(0,"jobId"); | |
1609 | if (!cjobId) { | |
1610 | Error("StartAnalysis", "Your JDL %s could not be submitted", fJDLName.Data()); | |
5513444a | 1611 | return kFALSE; |
a8739e8a | 1612 | } else { |
1613 | Info("StartAnalysis", "\n_______________________________________________________________________ \ | |
1614 | \n##### Your JDL %s was successfully submitted. \nTHE JOB ID IS: %s \ | |
1615 | \n_______________________________________________________________________", | |
1616 | fJDLName.Data(), cjobId); | |
1617 | jobID = cjobId; | |
1618 | } | |
1619 | delete res; | |
1620 | } | |
1621 | } else { | |
d2a409b2 | 1622 | // Submit for a range of enumeration of runs. |
1623 | Submit(); | |
c57f56b7 | 1624 | } |
a8739e8a | 1625 | |
c57f56b7 | 1626 | Info("StartAnalysis", "\n#### STARTING AN ALIEN SHELL FOR YOU. EXIT WHEN YOUR JOB %s HAS FINISHED. #### \ |
1627 | \n You may exit at any time and terminate the job later using the option <terminate> \ | |
1628 | \n ##################################################################################", jobID.Data()); | |
bb885a9e | 1629 | gSystem->Exec("aliensh"); |
5513444a | 1630 | return kTRUE; |
c57f56b7 | 1631 | } |
1632 | ||
d2a409b2 | 1633 | //______________________________________________________________________________ |
1634 | void AliAnalysisAlien::Submit() | |
1635 | { | |
1636 | // Submit all master jobs. | |
1637 | Int_t nmasterjobs = fInputFiles->GetEntries(); | |
1638 | Long_t tshoot = gSystem->Now(); | |
1639 | if (!fNsubmitted) SubmitNext(); | |
1640 | while (fNsubmitted < nmasterjobs) { | |
1641 | Long_t now = gSystem->Now(); | |
1642 | if ((now-tshoot)>30000) { | |
1643 | tshoot = now; | |
1644 | SubmitNext(); | |
1645 | } | |
1646 | } | |
1647 | } | |
1648 | ||
1649 | //______________________________________________________________________________ | |
1650 | void AliAnalysisAlien::SubmitNext() | |
1651 | { | |
1652 | // Submit next bunch of master jobs if the queue is free. | |
1653 | static Bool_t iscalled = kFALSE; | |
1654 | static Int_t firstmaster = 0; | |
1655 | static Int_t lastmaster = 0; | |
1656 | static Int_t npermaster = 0; | |
1657 | if (iscalled) return; | |
1658 | iscalled = kTRUE; | |
1659 | Int_t nrunning=0, nwaiting=0, nerror=0, ndone=0; | |
1660 | Int_t ntosubmit = 0; | |
1661 | TGridResult *res; | |
1662 | TString jobID = ""; | |
1663 | if (!fNsubmitted) ntosubmit = 1; | |
1664 | else { | |
1665 | TString status = GetJobStatus(firstmaster, lastmaster, nrunning, nwaiting, nerror, ndone); | |
84fcd93f | 1666 | printf("=== master %d: %s\n", lastmaster, status.Data()); |
d2a409b2 | 1667 | // If last master not split, just return |
1668 | if (status != "SPLIT") {iscalled = kFALSE; return;} | |
1669 | // No more than 100 waiting jobs | |
1670 | if (nwaiting>100) {iscalled = kFALSE; return;} | |
1671 | npermaster = (nrunning+nwaiting+nerror+ndone)/fNsubmitted; | |
1672 | if (npermaster) ntosubmit = (100-nwaiting)/npermaster; | |
84fcd93f | 1673 | printf("=== WAITING(%d) RUNNING(%d) DONE(%d) OTHER(%d) NperMaster=%d => to submit %d jobs\n", |
d2a409b2 | 1674 | nwaiting, nrunning, ndone, nerror, npermaster, ntosubmit); |
1675 | } | |
1676 | Int_t nmasterjobs = fInputFiles->GetEntries(); | |
1677 | for (Int_t i=0; i<ntosubmit; i++) { | |
1678 | // Submit for a range of enumeration of runs. | |
1679 | if (fNsubmitted>=nmasterjobs) {iscalled = kFALSE; return;} | |
1680 | TString query; | |
cd11251e | 1681 | TString runOutDir = gSystem->BaseName(fInputFiles->At(fNsubmitted)->GetName()); |
1682 | runOutDir.ReplaceAll(".xml", ""); | |
1683 | if (fOutputToRunNo) | |
1684 | query = Form("submit %s %s %s", fJDLName.Data(), fInputFiles->At(fNsubmitted)->GetName(), runOutDir.Data()); | |
1685 | else | |
1686 | query = Form("submit %s %s %03d", fJDLName.Data(), fInputFiles->At(fNsubmitted)->GetName(), fNsubmitted); | |
84fcd93f | 1687 | printf("********* %s\n",query.Data()); |
d2a409b2 | 1688 | res = gGrid->Command(query); |
1689 | if (res) { | |
98ca124f | 1690 | TString cjobId1 = res->GetKey(0,"jobId"); |
1691 | if (!cjobId1.Length()) { | |
d2a409b2 | 1692 | Error("StartAnalysis", "Your JDL %s could not be submitted", fJDLName.Data()); |
1693 | iscalled = kFALSE; | |
1694 | return; | |
1695 | } else { | |
1696 | Info("StartAnalysis", "\n_______________________________________________________________________ \ | |
1697 | \n##### Your JDL %s submitted (%d to go). \nTHE JOB ID IS: %s \ | |
1698 | \n_______________________________________________________________________", | |
98ca124f | 1699 | fJDLName.Data(), nmasterjobs-fNsubmitted-1, cjobId1.Data()); |
d2a409b2 | 1700 | jobID += cjobId1; |
1701 | jobID += " "; | |
98ca124f | 1702 | lastmaster = cjobId1.Atoi(); |
d2a409b2 | 1703 | if (!firstmaster) firstmaster = lastmaster; |
1704 | fNsubmitted++; | |
1705 | } | |
1706 | delete res; | |
1707 | } | |
1708 | } | |
1709 | iscalled = kFALSE; | |
1710 | } | |
1711 | ||
c57f56b7 | 1712 | //______________________________________________________________________________ |
1713 | void AliAnalysisAlien::WriteAnalysisFile() | |
1714 | { | |
f10e8481 | 1715 | // Write current analysis manager into the file <analysisFile> |
1716 | TString analysisFile = fExecutable; | |
1717 | analysisFile.ReplaceAll(".sh", ".root"); | |
c57f56b7 | 1718 | if (!TestBit(AliAnalysisGrid::kSubmit)) { |
1719 | AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager(); | |
1720 | if (!mgr || !mgr->IsInitialized()) { | |
1721 | Error("WriteAnalysisFile", "You need an initialized analysis manager for this"); | |
1722 | return; | |
1723 | } | |
1724 | // Check analysis type | |
1725 | TObject *handler; | |
1726 | if (mgr->GetMCtruthEventHandler()) TObject::SetBit(AliAnalysisGrid::kUseMC); | |
1727 | handler = (TObject*)mgr->GetInputEventHandler(); | |
1728 | if (handler) { | |
1729 | if (handler->InheritsFrom("AliESDInputHandler")) TObject::SetBit(AliAnalysisGrid::kUseESD); | |
1730 | if (handler->InheritsFrom("AliAODInputHandler")) TObject::SetBit(AliAnalysisGrid::kUseAOD); | |
1731 | } | |
1732 | TDirectory *cdir = gDirectory; | |
f10e8481 | 1733 | TFile *file = TFile::Open(analysisFile, "RECREATE"); |
c57f56b7 | 1734 | if (file) { |
fe2d7fc2 | 1735 | // Skip task Terminate calls for the grid job |
1736 | mgr->SetSkipTerminate(kTRUE); | |
1737 | // Unless merging makes no sense | |
1738 | if (IsSingleOutput()) mgr->SetSkipTerminate(kFALSE); | |
c57f56b7 | 1739 | mgr->Write(); |
1740 | delete file; | |
fe2d7fc2 | 1741 | // Enable termination for local jobs |
1742 | mgr->SetSkipTerminate(kFALSE); | |
c57f56b7 | 1743 | } |
1744 | if (cdir) cdir->cd(); | |
f10e8481 | 1745 | Info("WriteAnalysisFile", "\n##### Analysis manager: %s wrote to file <%s>\n", mgr->GetName(),analysisFile.Data()); |
c57f56b7 | 1746 | } |
1747 | Bool_t copy = kTRUE; | |
1748 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
1749 | if (copy) { | |
1750 | CdWork(); | |
1751 | TString workdir = gGrid->GetHomeDirectory(); | |
1752 | workdir += fGridWorkingDir; | |
f10e8481 | 1753 | Info("CreateJDL", "\n##### Copying file <%s> containing your initialized analysis manager to your alien workspace", analysisFile.Data()); |
1754 | if (FileExists(analysisFile)) gGrid->Rm(analysisFile); | |
1755 | TFile::Cp(Form("file:%s",analysisFile.Data()), Form("alien://%s/%s", workdir.Data(),analysisFile.Data())); | |
c57f56b7 | 1756 | } |
1757 | } | |
1758 | ||
1759 | //______________________________________________________________________________ | |
1760 | void AliAnalysisAlien::WriteAnalysisMacro() | |
1761 | { | |
1762 | // Write the analysis macro that will steer the analysis in grid mode. | |
1763 | if (!TestBit(AliAnalysisGrid::kSubmit)) { | |
1764 | ofstream out; | |
1765 | out.open(fAnalysisMacro.Data(), ios::out); | |
1766 | if (!out.good()) { | |
1767 | Error("WriteAnalysisMacro", "could not open file %s for writing", fAnalysisMacro.Data()); | |
1768 | return; | |
1769 | } | |
1770 | TString func = fAnalysisMacro; | |
1771 | TString type = "ESD"; | |
1772 | TString comment = "// Analysis using "; | |
1773 | if (TObject::TestBit(AliAnalysisGrid::kUseESD)) comment += "ESD"; | |
1774 | if (TObject::TestBit(AliAnalysisGrid::kUseAOD)) { | |
1775 | type = "AOD"; | |
1776 | comment += "AOD"; | |
1777 | } | |
0df6ccf2 | 1778 | if (type!="AOD" && fFriendChainName!="") { |
1779 | Error("WriteAnalysisMacro", "Friend chain can be attached only to AOD"); | |
1780 | return; | |
1781 | } | |
c57f56b7 | 1782 | if (TObject::TestBit(AliAnalysisGrid::kUseMC)) comment += "/MC"; |
1783 | else comment += " data"; | |
1784 | out << "const char *anatype = \"" << type.Data() << "\";" << endl << endl; | |
1785 | func.ReplaceAll(".C", ""); | |
1786 | out << "void " << func.Data() << "()" << endl; | |
1787 | out << "{" << endl; | |
1788 | out << comment.Data() << endl; | |
1789 | out << "// Automatically generated analysis steering macro executed in grid subjobs" << endl << endl; | |
f7498086 | 1790 | out << " TStopwatch timer;" << endl; |
1791 | out << " timer.Start();" << endl << endl; | |
c57f56b7 | 1792 | out << "// load base root libraries" << endl; |
1793 | out << " gSystem->Load(\"libTree\");" << endl; | |
1794 | out << " gSystem->Load(\"libGeom\");" << endl; | |
1795 | out << " gSystem->Load(\"libVMC\");" << endl; | |
1796 | out << " gSystem->Load(\"libPhysics\");" << endl << endl; | |
648174cf | 1797 | out << " gSystem->Load(\"libMinuit\");" << endl << endl; |
57377eb5 | 1798 | out << "// Load analysis framework libraries" << endl; |
4e5c5506 | 1799 | if (!fPackages) { |
4e5c5506 | 1800 | out << " gSystem->Load(\"libSTEERBase\");" << endl; |
1801 | out << " gSystem->Load(\"libESD\");" << endl; | |
1802 | out << " gSystem->Load(\"libAOD\");" << endl; | |
1803 | out << " gSystem->Load(\"libANALYSIS\");" << endl; | |
57377eb5 | 1804 | out << " gSystem->Load(\"libANALYSISalice\");" << endl; |
1805 | out << " gSystem->Load(\"libCORRFW\");" << endl << endl; | |
4e5c5506 | 1806 | } else { |
4e5c5506 | 1807 | TIter next(fPackages); |
1808 | TObject *obj; | |
57377eb5 | 1809 | TString pkgname; |
1810 | Bool_t hasSTEERBase = kFALSE; | |
1811 | Bool_t hasESD = kFALSE; | |
1812 | Bool_t hasAOD = kFALSE; | |
1813 | Bool_t hasANALYSIS = kFALSE; | |
1814 | Bool_t hasANALYSISalice = kFALSE; | |
1815 | Bool_t hasCORRFW = kFALSE; | |
1816 | while ((obj=next())) { | |
1817 | pkgname = obj->GetName(); | |
4478e6f1 | 1818 | if (pkgname == "STEERBase" || |
1819 | pkgname == "STEERBase.par") hasSTEERBase = kTRUE; | |
1820 | if (pkgname == "ESD" || | |
1821 | pkgname == "ESD.par") hasESD = kTRUE; | |
1822 | if (pkgname == "AOD" || | |
1823 | pkgname == "AOD.par") hasAOD = kTRUE; | |
1824 | if (pkgname == "ANALYSIS" || | |
1825 | pkgname == "ANALYSIS.par") hasANALYSIS = kTRUE; | |
1826 | if (pkgname == "ANALYSISalice" || | |
1827 | pkgname == "ANALYSISalice.par") hasANALYSISalice = kTRUE; | |
1828 | if (pkgname == "CORRFW" || | |
1829 | pkgname == "CORRFW.par") hasCORRFW = kTRUE; | |
57377eb5 | 1830 | } |
1831 | if (!hasSTEERBase) out << " gSystem->Load(\"libSTEERBase\");" << endl; | |
1832 | else out << " if (!SetupPar(\"STEERBase\")) return;" << endl; | |
1833 | if (!hasESD) out << " gSystem->Load(\"libESD\");" << endl; | |
1834 | else out << " if (!SetupPar(\"ESD\")) return;" << endl; | |
1835 | if (!hasAOD) out << " gSystem->Load(\"libAOD\");" << endl; | |
1836 | else out << " if (!SetupPar(\"AOD\")) return;" << endl; | |
1837 | if (!hasANALYSIS) out << " gSystem->Load(\"libANALYSIS\");" << endl; | |
1838 | else out << " if (!SetupPar(\"ANALYSIS\")) return;" << endl; | |
1839 | if (!hasANALYSISalice) out << " gSystem->Load(\"libANALYSISalice\");" << endl; | |
1840 | else out << " if (!SetupPar(\"ANALYSISalice\")) return;" << endl; | |
1841 | if (!hasCORRFW) out << " gSystem->Load(\"libCORRFW\");" << endl << endl; | |
1842 | else out << " if (!SetupPar(\"CORRFW\")) return;" << endl << endl; | |
1843 | out << "// Compile other par packages" << endl; | |
1844 | next.Reset(); | |
fcc9bb6f | 1845 | while ((obj=next())) { |
1846 | pkgname = obj->GetName(); | |
4478e6f1 | 1847 | if (pkgname == "STEERBase" || |
1848 | pkgname == "STEERBase.par" || | |
1849 | pkgname == "ESD" || | |
1850 | pkgname == "ESD.par" || | |
1851 | pkgname == "AOD" || | |
1852 | pkgname == "AOD.par" || | |
1853 | pkgname == "ANALYSIS" || | |
1854 | pkgname == "ANALYSIS.par" || | |
1855 | pkgname == "ANALYSISalice" || | |
1856 | pkgname == "ANALYSISalice.par" || | |
1857 | pkgname == "CORRFW" || | |
1858 | pkgname == "CORRFW.par") continue; | |
4e5c5506 | 1859 | out << " if (!SetupPar(\"" << obj->GetName() << "\")) return;" << endl; |
fcc9bb6f | 1860 | } |
4e5c5506 | 1861 | } |
43da816a | 1862 | out << "// include path" << endl; |
1863 | if (fIncludePath.Length()) out << " gSystem->AddIncludePath(\"" << fIncludePath.Data() << "\");" << endl; | |
1864 | out << " gSystem->AddIncludePath(\"-I$ALICE_ROOT/include\");" << endl << endl; | |
6da75e0b | 1865 | if (fAdditionalLibs.Length()) { |
1866 | out << "// Add aditional AliRoot libraries" << endl; | |
1867 | TObjArray *list = fAdditionalLibs.Tokenize(" "); | |
1868 | TIter next(list); | |
1869 | TObjString *str; | |
1870 | while((str=(TObjString*)next())) { | |
1871 | if (str->GetString().Contains(".so")) | |
1872 | out << " gSystem->Load(\"" << str->GetString().Data() << "\");" << endl; | |
1873 | } | |
1874 | if (list) delete list; | |
1875 | } | |
1876 | out << endl; | |
c57f56b7 | 1877 | out << "// analysis source to be compiled at runtime (if any)" << endl; |
1878 | if (fAnalysisSource.Length()) { | |
1879 | TObjArray *list = fAnalysisSource.Tokenize(" "); | |
1880 | TIter next(list); | |
1881 | TObjString *str; | |
1882 | while((str=(TObjString*)next())) { | |
1883 | out << " gROOT->ProcessLine(\".L " << str->GetString().Data() << "+g\");" << endl; | |
1884 | } | |
1885 | if (list) delete list; | |
1886 | } | |
1887 | out << endl; | |
1888 | out << "// connect to AliEn and make the chain" << endl; | |
1889 | out << " if (!TGrid::Connect(\"alien://\")) return;" << endl; | |
1890 | if (IsUsingTags()) { | |
1891 | out << " TChain *chain = CreateChainFromTags(\"wn.xml\", anatype);" << endl << endl; | |
1892 | } else { | |
76535c98 | 1893 | if(fFriendChainName!="AliAOD.VertexingHF.root") { |
1894 | out << " TChain *chain = CreateChain(\"wn.xml\", anatype);" << endl << endl; | |
1895 | } else { | |
1896 | out << " // Check if the macro to create the chain was provided" << endl; | |
1897 | out << " if (gSystem->AccessPathName(\"MakeAODInputChain.C\")) {" << endl; | |
1898 | out << " ::Error(\"" << func.Data() << "\", \"File MakeAODInputChain.C not provided. Aborting.\");" << endl; | |
1899 | out << " return;" << endl; | |
1900 | out << " }" << endl; | |
1901 | out << " gROOT->LoadMacro(\"MakeAODInputChain.C\");" << endl; | |
1902 | out << " TChain *chain = MakeAODInputChain(\"wn.xml\",\"none\");" << endl << endl; | |
1903 | } | |
c57f56b7 | 1904 | } |
1905 | out << "// read the analysis manager from file" << endl; | |
f10e8481 | 1906 | TString analysisFile = fExecutable; |
1907 | analysisFile.ReplaceAll(".sh", ".root"); | |
1908 | out << " TFile *file = TFile::Open(\"" << analysisFile << "\");" << endl; | |
c57f56b7 | 1909 | out << " if (!file) return;" << endl; |
1910 | out << " TIter nextkey(file->GetListOfKeys());" << endl; | |
1911 | out << " AliAnalysisManager *mgr = 0;" << endl; | |
1912 | out << " TKey *key;" << endl; | |
1913 | out << " while ((key=(TKey*)nextkey())) {" << endl; | |
1914 | out << " if (!strcmp(key->GetClassName(), \"AliAnalysisManager\"))" << endl; | |
1915 | out << " mgr = (AliAnalysisManager*)file->Get(key->GetName());" << endl; | |
1916 | out << " };" << endl; | |
1917 | out << " if (!mgr) {" << endl; | |
f10e8481 | 1918 | out << " ::Error(\"" << func.Data() << "\", \"No analysis manager found in file" << analysisFile <<"\");" << endl; |
c57f56b7 | 1919 | out << " return;" << endl; |
1920 | out << " }" << endl << endl; | |
1921 | out << " mgr->PrintStatus();" << endl; | |
1922 | out << " mgr->StartAnalysis(\"localfile\", chain);" << endl; | |
f7498086 | 1923 | out << " timer.Stop();" << endl; |
1924 | out << " timer.Print();" << endl; | |
c57f56b7 | 1925 | out << "}" << endl << endl; |
1926 | if (IsUsingTags()) { | |
1927 | out << "TChain* CreateChainFromTags(const char *xmlfile, const char *type=\"ESD\")" << endl; | |
1928 | out << "{" << endl; | |
1929 | out << "// Create a chain using tags from the xml file." << endl; | |
1930 | out << " TAlienCollection* coll = TAlienCollection::Open(xmlfile);" << endl; | |
1931 | out << " if (!coll) {" << endl; | |
1932 | out << " ::Error(\"CreateChainFromTags\", \"Cannot create an AliEn collection from %s\", xmlfile);" << endl; | |
1933 | out << " return NULL;" << endl; | |
1934 | out << " }" << endl; | |
1935 | out << " TGridResult* tagResult = coll->GetGridResult(\"\",kFALSE,kFALSE);" << endl; | |
1936 | out << " AliTagAnalysis *tagAna = new AliTagAnalysis(type);" << endl; | |
1937 | out << " tagAna->ChainGridTags(tagResult);" << endl << endl; | |
1938 | out << " AliRunTagCuts *runCuts = new AliRunTagCuts();" << endl; | |
1939 | out << " AliLHCTagCuts *lhcCuts = new AliLHCTagCuts();" << endl; | |
1940 | out << " AliDetectorTagCuts *detCuts = new AliDetectorTagCuts();" << endl; | |
1941 | out << " AliEventTagCuts *evCuts = new AliEventTagCuts();" << endl; | |
1942 | out << " // Check if the cuts configuration file was provided" << endl; | |
1943 | out << " if (!gSystem->AccessPathName(\"ConfigureCuts.C\")) {" << endl; | |
1944 | out << " gROOT->LoadMacro(\"ConfigureCuts.C\");" << endl; | |
1945 | out << " ConfigureCuts(runCuts, lhcCuts, detCuts, evCuts);" << endl; | |
1946 | out << " }" << endl; | |
0df6ccf2 | 1947 | if (fFriendChainName=="") { |
1948 | out << " TChain *chain = tagAna->QueryTags(runCuts, lhcCuts, detCuts, evCuts);" << endl; | |
1949 | } else { | |
1950 | out << " TString tmpColl=\"tmpCollection.xml\";" << endl; | |
1951 | out << " tagAna->CreateXMLCollection(tmpColl.Data(),runCuts, lhcCuts, detCuts, evCuts);" << endl; | |
1952 | out << " TChain *chain = CreateChain(tmpColl.Data(),type);" << endl; | |
1953 | } | |
c57f56b7 | 1954 | out << " if (!chain || !chain->GetNtrees()) return NULL;" << endl; |
1955 | out << " chain->ls();" << endl; | |
1956 | out << " return chain;" << endl; | |
fcc9bb6f | 1957 | out << "}" << endl << endl; |
c57f56b7 | 1958 | if (gSystem->AccessPathName("ConfigureCuts.C")) { |
1959 | TString msg = "\n##### You may want to provide a macro ConfigureCuts.C with a method:\n"; | |
1960 | msg += " void ConfigureCuts(AliRunTagCuts *runCuts,\n"; | |
1961 | msg += " AliLHCTagCuts *lhcCuts,\n"; | |
1962 | msg += " AliDetectorTagCuts *detCuts,\n"; | |
1963 | msg += " AliEventTagCuts *evCuts)"; | |
1964 | Info("WriteAnalysisMacro", msg.Data()); | |
1965 | } | |
0df6ccf2 | 1966 | } |
1967 | if (!IsUsingTags() || fFriendChainName!="") { | |
fcc9bb6f | 1968 | out <<"//________________________________________________________________________________" << endl; |
c57f56b7 | 1969 | out << "TChain* CreateChain(const char *xmlfile, const char *type=\"ESD\")" << endl; |
1970 | out << "{" << endl; | |
1971 | out << "// Create a chain using url's from xml file" << endl; | |
1972 | out << " TString treename = type;" << endl; | |
1973 | out << " treename.ToLower();" << endl; | |
1974 | out << " treename += \"Tree\";" << endl; | |
e02fee64 | 1975 | out << " printf(\"***************************************\\n\");" << endl; |
1976 | out << " printf(\" Getting chain of trees %s\\n\", treename.Data());" << endl; | |
1977 | out << " printf(\"***************************************\\n\");" << endl; | |
c57f56b7 | 1978 | out << " TAlienCollection *coll = TAlienCollection::Open(xmlfile);" << endl; |
1979 | out << " if (!coll) {" << endl; | |
1980 | out << " ::Error(\"CreateChain\", \"Cannot create an AliEn collection from %s\", xmlfile);" << endl; | |
1981 | out << " return NULL;" << endl; | |
1982 | out << " }" << endl; | |
1983 | out << " TChain *chain = new TChain(treename);" << endl; | |
0df6ccf2 | 1984 | if(fFriendChainName!="") { |
1985 | out << " TChain *chainFriend = new TChain(treename);" << endl; | |
1986 | } | |
c57f56b7 | 1987 | out << " coll->Reset();" << endl; |
0df6ccf2 | 1988 | out << " while (coll->Next()) {" << endl; |
1989 | out << " chain->Add(coll->GetTURL(\"\"));" << endl; | |
1990 | if(fFriendChainName!="") { | |
1991 | out << " TString fileFriend=coll->GetTURL(\"\");" << endl; | |
1992 | out << " fileFriend.ReplaceAll(\"AliAOD.root\",\""<<fFriendChainName.Data()<<"\");" << endl; | |
1993 | out << " fileFriend.ReplaceAll(\"AliAODs.root\",\""<<fFriendChainName.Data()<<"\");" << endl; | |
1994 | out << " chainFriend->Add(fileFriend.Data());" << endl; | |
1995 | } | |
1996 | out << " }" << endl; | |
c57f56b7 | 1997 | out << " if (!chain->GetNtrees()) {" << endl; |
1998 | out << " ::Error(\"CreateChain\", \"No tree found from collection %s\", xmlfile);" << endl; | |
1999 | out << " return NULL;" << endl; | |
2000 | out << " }" << endl; | |
0df6ccf2 | 2001 | if(fFriendChainName!="") { |
2002 | out << " chain->AddFriend(chainFriend);" << endl; | |
2003 | } | |
c57f56b7 | 2004 | out << " return chain;" << endl; |
fcc9bb6f | 2005 | out << "}" << endl << endl; |
c57f56b7 | 2006 | } |
4e5c5506 | 2007 | if (fPackages) { |
fcc9bb6f | 2008 | out <<"//________________________________________________________________________________" << endl; |
4e5c5506 | 2009 | out << "Bool_t SetupPar(const char *package) {" << endl; |
2010 | out << "// Compile the package and set it up." << endl; | |
2011 | out << " TString pkgdir = package;" << endl; | |
2012 | out << " pkgdir.ReplaceAll(\".par\",\"\");" << endl; | |
fcc9bb6f | 2013 | out << " gSystem->Exec(Form(\"tar xvzf %s.par\", pkgdir.Data()));" << endl; |
4e5c5506 | 2014 | out << " TString cdir = gSystem->WorkingDirectory();" << endl; |
2015 | out << " gSystem->ChangeDirectory(pkgdir);" << endl; | |
2016 | out << " // Check for BUILD.sh and execute" << endl; | |
2017 | out << " if (!gSystem->AccessPathName(\"PROOF-INF/BUILD.sh\")) {" << endl; | |
2018 | out << " printf(\"*******************************\\n\");" << endl; | |
2019 | out << " printf(\"*** Building PAR archive ***\\n\");" << endl; | |
2020 | out << " printf(\"*******************************\\n\");" << endl; | |
2021 | out << " if (gSystem->Exec(\"PROOF-INF/BUILD.sh\")) {" << endl; | |
fcc9bb6f | 2022 | out << " ::Error(\"SetupPar\", \"Cannot build par archive %s\", pkgdir.Data());" << endl; |
4e5c5506 | 2023 | out << " gSystem->ChangeDirectory(cdir);" << endl; |
2024 | out << " return kFALSE;" << endl; | |
2025 | out << " }" << endl; | |
2026 | out << " } else {" << endl; | |
fcc9bb6f | 2027 | out << " ::Error(\"SetupPar\",\"Cannot access PROOF-INF/BUILD.sh for package %s\", pkgdir.Data());" << endl; |
4e5c5506 | 2028 | out << " gSystem->ChangeDirectory(cdir);" << endl; |
2029 | out << " return kFALSE;" << endl; | |
2030 | out << " }" << endl; | |
2031 | out << " // Check for SETUP.C and execute" << endl; | |
2032 | out << " if (!gSystem->AccessPathName(\"PROOF-INF/SETUP.C\")) {" << endl; | |
2033 | out << " printf(\"*******************************\\n\");" << endl; | |
2034 | out << " printf(\"*** Setup PAR archive ***\\n\");" << endl; | |
2035 | out << " printf(\"*******************************\\n\");" << endl; | |
2036 | out << " gROOT->Macro(\"PROOF-INF/SETUP.C\");" << endl; | |
2037 | out << " } else {" << endl; | |
fcc9bb6f | 2038 | out << " ::Error(\"SetupPar\",\"Cannot access PROOF-INF/SETUP.C for package %s\", pkgdir.Data());" << endl; |
4e5c5506 | 2039 | out << " gSystem->ChangeDirectory(cdir);" << endl; |
2040 | out << " return kFALSE;" << endl; | |
2041 | out << " }" << endl; | |
2042 | out << " // Restore original workdir" << endl; | |
2043 | out << " gSystem->ChangeDirectory(cdir);" << endl; | |
2044 | out << " return kTRUE;" << endl; | |
2045 | out << "}" << endl; | |
2046 | } | |
c57f56b7 | 2047 | Info("WriteAnalysisMacro", "\n##### Analysis macro to run on worker nodes <%s> written",fAnalysisMacro.Data()); |
2048 | } | |
2049 | Bool_t copy = kTRUE; | |
2050 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
2051 | if (copy) { | |
2052 | CdWork(); | |
2053 | TString workdir = gGrid->GetHomeDirectory(); | |
2054 | workdir += fGridWorkingDir; | |
2055 | if (FileExists(fAnalysisMacro)) gGrid->Rm(fAnalysisMacro); | |
2056 | if (IsUsingTags() && !gSystem->AccessPathName("ConfigureCuts.C")) { | |
2057 | if (FileExists("ConfigureCuts.C")) gGrid->Rm("ConfigureCuts.C"); | |
2058 | Info("WriteAnalysisMacro", "\n##### Copying cuts configuration macro: <ConfigureCuts.C> to your alien workspace"); | |
2059 | TFile::Cp("file:ConfigureCuts.C", Form("alien://%s/ConfigureCuts.C", workdir.Data())); | |
2060 | } | |
2061 | Info("WriteAnalysisMacro", "\n##### Copying analysis macro: <%s> to your alien workspace", fAnalysisMacro.Data()); | |
2062 | TFile::Cp(Form("file:%s",fAnalysisMacro.Data()), Form("alien://%s/%s", workdir.Data(), fAnalysisMacro.Data())); | |
2063 | } | |
2064 | } | |
2065 | ||
2066 | //______________________________________________________________________________ | |
2067 | void AliAnalysisAlien::WriteExecutable() | |
2068 | { | |
2069 | // Generate the alien executable script. | |
2070 | if (!TestBit(AliAnalysisGrid::kSubmit)) { | |
2071 | ofstream out; | |
2072 | out.open(fExecutable.Data(), ios::out); | |
2073 | if (out.bad()) { | |
5513444a | 2074 | Error("WriteExecutable", "Bad file name for executable: %s", fExecutable.Data()); |
c57f56b7 | 2075 | return; |
2076 | } | |
2077 | out << "#!/bin/bash" << endl; | |
c57f56b7 | 2078 | out << "echo \"=========================================\"" << endl; |
2079 | out << "echo \"############## PATH : ##############\"" << endl; | |
2080 | out << "echo $PATH" << endl; | |
2081 | out << "echo \"############## LD_LIBRARY_PATH : ##############\"" << endl; | |
2082 | out << "echo $LD_LIBRARY_PATH" << endl; | |
2083 | out << "echo \"############## ROOTSYS : ##############\"" << endl; | |
2084 | out << "echo $ROOTSYS" << endl; | |
2085 | out << "echo \"############## which root : ##############\"" << endl; | |
2086 | out << "which root" << endl; | |
2087 | out << "echo \"############## ALICE_ROOT : ##############\"" << endl; | |
2088 | out << "echo $ALICE_ROOT" << endl; | |
2089 | out << "echo \"############## which aliroot : ##############\"" << endl; | |
2090 | out << "which aliroot" << endl; | |
9c5ddadc | 2091 | out << "echo \"############## system limits : ##############\"" << endl; |
2092 | out << "ulimit -a" << endl; | |
2093 | out << "echo \"############## memory : ##############\"" << endl; | |
2094 | out << "free -m" << endl; | |
c57f56b7 | 2095 | out << "echo \"=========================================\"" << endl << endl; |
74a53467 | 2096 | // Make sure we can properly compile par files |
2097 | if (TObject::TestBit(AliAnalysisGrid::kUsePars)) out << "export LD_LIBRARY_PATH=.:$LD_LIBRARY_PATH" << endl; | |
0a1c1f7f | 2098 | out << fExecutableCommand << " "; |
631c0b05 | 2099 | out << fAnalysisMacro.Data() << " " << fExecutableArgs.Data() << endl << endl; |
9c5ddadc | 2100 | out << "echo \"======== " << fAnalysisMacro.Data() << " finished with exit code: $? ========\"" << endl; |
2101 | out << "echo \"############## memory after: ##############\"" << endl; | |
2102 | out << "free -m" << endl; | |
2103 | out << "echo \"############## Last 10 lines from dmesg : ##############\"" << endl; | |
2104 | out << "dmesg | tail -n 10" << endl; | |
c57f56b7 | 2105 | } |
2106 | Bool_t copy = kTRUE; | |
2107 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
2108 | if (copy) { | |
2109 | CdWork(); | |
2110 | TString workdir = gGrid->GetHomeDirectory(); | |
923e2ca5 | 2111 | TString bindir = Form("%s/bin", workdir.Data()); |
2112 | if (!DirectoryExists(bindir)) gGrid->Mkdir(bindir); | |
c57f56b7 | 2113 | workdir += fGridWorkingDir; |
2114 | TString executable = Form("%s/bin/%s", gGrid->GetHomeDirectory(), fExecutable.Data()); | |
2115 | if (FileExists(executable)) gGrid->Rm(executable); | |
2116 | Info("CreateJDL", "\n##### Copying executable file <%s> to your AliEn bin directory", fExecutable.Data()); | |
2117 | TFile::Cp(Form("file:%s",fExecutable.Data()), Form("alien://%s", executable.Data())); | |
2118 | } | |
2119 | } | |
2120 | ||
2121 | //______________________________________________________________________________ | |
5513444a | 2122 | void AliAnalysisAlien::WriteProductionFile(const char *filename) const |
2123 | { | |
2124 | // Write the production file to be submitted by LPM manager. The format is: | |
f5e8c702 | 2125 | // First line: full_path_to_jdl estimated_no_subjobs_per_master |
5513444a | 2126 | // Next lines: full_path_to_dataset XXX (XXX is a string) |
2127 | // To submit, one has to: submit jdl XXX for all lines | |
2128 | ofstream out; | |
2129 | out.open(filename, ios::out); | |
2130 | if (out.bad()) { | |
2131 | Error("WriteProductionFile", "Bad file name: %s", filename); | |
2132 | return; | |
2133 | } | |
2134 | TString workdir = gGrid->GetHomeDirectory(); | |
2135 | workdir += fGridWorkingDir; | |
f5e8c702 | 2136 | Int_t njobspermaster = 1000*fNrunsPerMaster/fSplitMaxInputFileNumber; |
5513444a | 2137 | TString locjdl = Form("%s/%s", workdir.Data(),fJDLName.Data()); |
f5e8c702 | 2138 | out << locjdl << " " << njobspermaster << endl; |
5513444a | 2139 | Int_t nmasterjobs = fInputFiles->GetEntries(); |
2140 | for (Int_t i=0; i<nmasterjobs; i++) { | |
b5fe9cba | 2141 | out << Form("%s", fInputFiles->At(i)->GetName()) << " " << Form("%03d", i) << endl; |
5513444a | 2142 | } |
2143 | Info("WriteProductionFile", "\n##### Copying production file <%s> to your work directory", filename); | |
2144 | TFile::Cp(Form("file:%s",filename), Form("alien://%s/%s", workdir.Data(),filename)); | |
2145 | } | |
2146 | ||
2147 | //______________________________________________________________________________ | |
c57f56b7 | 2148 | void AliAnalysisAlien::WriteValidationScript() |
2149 | { | |
2150 | // Generate the alien validation script. | |
2151 | // Generate the validation script | |
2152 | TObjString *os; | |
0d5d317c | 2153 | TString validationScript = fExecutable; |
2154 | validationScript.ReplaceAll(".sh", "_validation.sh"); | |
c57f56b7 | 2155 | if (!Connect()) { |
2156 | Error("WriteValidationScript", "Alien connection required"); | |
2157 | return; | |
2158 | } | |
2159 | TString out_stream = ""; | |
2160 | if (!TestBit(AliAnalysisGrid::kTest)) out_stream = " >> stdout"; | |
2161 | if (!TestBit(AliAnalysisGrid::kSubmit)) { | |
2162 | ofstream out; | |
0d5d317c | 2163 | out.open(validationScript, ios::out); |
c57f56b7 | 2164 | out << "#!/bin/bash" << endl; |
2165 | out << "##################################################" << endl; | |
2166 | out << "validateout=`dirname $0`" << endl; | |
2167 | out << "validatetime=`date`" << endl; | |
2168 | out << "validated=\"0\";" << endl; | |
2169 | out << "error=0" << endl; | |
2170 | out << "if [ -z $validateout ]" << endl; | |
2171 | out << "then" << endl; | |
2172 | out << " validateout=\".\"" << endl; | |
2173 | out << "fi" << endl << endl; | |
2174 | out << "cd $validateout;" << endl; | |
2175 | out << "validateworkdir=`pwd`;" << endl << endl; | |
2176 | out << "echo \"*******************************************************\"" << out_stream << endl; | |
2177 | out << "echo \"* Automatically generated validation script *\"" << out_stream << endl; | |
2178 | out << "" << endl; | |
2179 | out << "echo \"* Time: $validatetime \"" << out_stream << endl; | |
2180 | out << "echo \"* Dir: $validateout\"" << out_stream << endl; | |
2181 | out << "echo \"* Workdir: $validateworkdir\"" << out_stream << endl; | |
2182 | out << "echo \"* ----------------------------------------------------*\"" << out_stream << endl; | |
2183 | out << "ls -la ./" << out_stream << endl; | |
2184 | out << "echo \"* ----------------------------------------------------*\"" << out_stream << endl << endl; | |
2185 | out << "##################################################" << endl; | |
ebec370a | 2186 | |
2187 | out << "" << endl; | |
2188 | out << "parArch=`grep -Ei \"Cannot Build the PAR Archive\" stderr`" << endl; | |
2189 | out << "segViol=`grep -Ei \"Segmentation violation\" stderr`" << endl; | |
2190 | out << "segFault=`grep -Ei \"Segmentation fault\" stderr`" << endl; | |
2191 | out << "" << endl; | |
2192 | ||
2193 | out << "if [ ! -f stderr ] ; then" << endl; | |
2194 | out << " error=1" << endl; | |
2195 | out << " echo \"* ########## Job not validated - no stderr ###\" " << out_stream << endl; | |
2196 | out << " echo \"Error = $error\" " << out_stream << endl; | |
2197 | out << "fi" << endl; | |
2198 | ||
2199 | out << "if [ \"$parArch\" != \"\" ] ; then" << endl; | |
2200 | out << " error=1" << endl; | |
2201 | out << " echo \"* ########## Job not validated - PAR archive not built ###\" " << out_stream << endl; | |
2202 | out << " echo \"$parArch\" " << out_stream << endl; | |
2203 | out << " echo \"Error = $error\" " << out_stream << endl; | |
2204 | out << "fi" << endl; | |
2205 | ||
2206 | out << "if [ \"$segViol\" != \"\" ] ; then" << endl; | |
2207 | out << " error=1" << endl; | |
2208 | out << " echo \"* ########## Job not validated - Segment. violation ###\" " << out_stream << endl; | |
2209 | out << " echo \"$segViol\" " << out_stream << endl; | |
2210 | out << " echo \"Error = $error\" " << out_stream << endl; | |
2211 | out << "fi" << endl; | |
2212 | ||
2213 | out << "if [ \"$segFault\" != \"\" ] ; then" << endl; | |
2214 | out << " error=1" << endl; | |
2215 | out << " echo \"* ########## Job not validated - Segment. fault ###\" " << out_stream << endl; | |
2216 | out << " echo \"$segFault\" " << out_stream << endl; | |
2217 | out << " echo \"Error = $error\" " << out_stream << endl; | |
2218 | out << "fi" << endl; | |
2219 | ||
2220 | // Part dedicated to the specific analyses running into the train | |
2221 | ||
c57f56b7 | 2222 | TObjArray *arr = fOutputFiles.Tokenize(" "); |
2223 | TIter next1(arr); | |
2224 | TString output_file; | |
2225 | while ((os=(TObjString*)next1())) { | |
2226 | output_file = os->GetString(); | |
2227 | Int_t index = output_file.Index("@"); | |
2228 | if (index > 0) output_file.Remove(index); | |
2229 | out << "if ! [ -f " << output_file.Data() << " ] ; then" << endl; | |
2230 | out << " error=1" << endl; | |
2231 | out << " echo \"Output file(s) not found. Job FAILED !\"" << out_stream << endl; | |
2232 | out << " echo \"Output file(s) not found. Job FAILED !\" >> stderr" << endl; | |
2233 | out << "fi" << endl; | |
2234 | } | |
2235 | delete arr; | |
923e2ca5 | 2236 | out << "if ! [ -f outputs_valid ] ; then" << endl; |
2237 | out << " error=1" << endl; | |
2238 | out << " echo \"Output files were not validated by the analysis manager\" >> stdout" << endl; | |
2239 | out << " echo \"Output files were not validated by the analysis manager\" >> stderr" << endl; | |
2240 | out << "fi" << endl; | |
2241 | ||
c57f56b7 | 2242 | out << "if [ $error = 0 ] ; then" << endl; |
2243 | out << " echo \"* ---------------- Job Validated ------------------*\"" << out_stream << endl; | |
2244 | out << "fi" << endl; | |
2245 | ||
2246 | out << "echo \"* ----------------------------------------------------*\"" << out_stream << endl; | |
2247 | out << "echo \"*******************************************************\"" << out_stream << endl; | |
2248 | out << "cd -" << endl; | |
2249 | out << "exit $error" << endl; | |
2250 | } | |
2251 | Bool_t copy = kTRUE; | |
2252 | if (TestBit(AliAnalysisGrid::kOffline) || TestBit(AliAnalysisGrid::kTest)) copy = kFALSE; | |
2253 | if (copy) { | |
2254 | CdWork(); | |
2255 | TString workdir = gGrid->GetHomeDirectory(); | |
2256 | workdir += fGridWorkingDir; | |
0d5d317c | 2257 | Info("CreateJDL", "\n##### Copying validation script <%s> to your AliEn working space", validationScript.Data()); |
2258 | if (FileExists(validationScript)) gGrid->Rm(validationScript); | |
2259 | TFile::Cp(Form("file:%s",validationScript.Data()), Form("alien://%s/%s", workdir.Data(),validationScript.Data())); | |
c57f56b7 | 2260 | } |
2261 | } |