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c57f56b7 | 1 | #ifndef ALIANALYSISALIEN_H |
2 | #define ALIANALYSISALIEN_H | |
3 | /* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. * | |
4 | * See cxx source for full Copyright notice */ | |
5 | ||
6 | // Author: Mihaela Gheata, 01/09/2008 | |
7 | ||
8 | //============================================================================== | |
9 | // AliAnalysisAlien - AliEn utility class. Provides interface for creating | |
10 | // a personalized JDL, finding and creating a dataset. | |
11 | //============================================================================== | |
12 | ||
13 | #ifndef ALIANALYSISGRID_H | |
14 | #include "AliAnalysisGrid.h" | |
15 | #endif | |
16 | ||
17 | #ifndef ROOT_TString | |
18 | #include <TString.h> | |
19 | #endif | |
20 | ||
149d288c | 21 | #ifndef ROOT_TMath |
22 | #include <TMath.h> | |
23 | #endif | |
24 | ||
28ce6c9c | 25 | #ifndef ROOT_TMap |
26 | #include <TMap.h> | |
27 | #endif | |
28 | ||
105631b5 | 29 | class AliAnalysisManager; |
77f34eae | 30 | class AliAnalysisTaskCfg; |
c57f56b7 | 31 | class TGridJDL; |
32 | ||
33 | class AliAnalysisAlien : public AliAnalysisGrid { | |
34 | ||
35 | public: | |
36 | ||
37 | AliAnalysisAlien(); | |
38 | AliAnalysisAlien(const char *name); | |
39 | virtual ~AliAnalysisAlien(); | |
40 | AliAnalysisAlien(const AliAnalysisAlien& other); | |
41 | AliAnalysisAlien& operator=(const AliAnalysisAlien& other); | |
42 | // Setters | |
37d21c01 | 43 | virtual void AddAdditionalLibrary(const char *name); |
f965131e | 44 | virtual void AddIncludePath(const char *path); |
c57f56b7 | 45 | virtual void AddRunNumber(Int_t run); |
ee75cfc3 | 46 | virtual void AddRunNumber(const char *run); |
98690895 | 47 | virtual void AddRunList(const char *runList); |
c57f56b7 | 48 | virtual void AddDataFile(const char *lfn); |
648174cf | 49 | virtual void AddExternalPackage(const char *name); |
c57f56b7 | 50 | virtual void SetExecutable(const char *name="analysis.sh") {fExecutable = name;} |
0a1c1f7f | 51 | virtual void SetExecutableCommand(const char *command="root -b -q") {fExecutableCommand = command;} |
c57f56b7 | 52 | virtual void SetArguments(const char *name="") {fArguments = name;} |
631c0b05 | 53 | virtual void SetExecutableArgs(const char *name="") {fExecutableArgs = name;} |
c57f56b7 | 54 | virtual void SetAnalysisMacro(const char *name="myAnalysis.C") {fAnalysisMacro = name;} |
55 | virtual void SetAnalysisSource(const char *name="myAnalysisClass.cxx") {fAnalysisSource = name;} | |
d3b18c4c | 56 | virtual void SetValidationScript(const char *name="validation.sh") {fValidationScript = name;} |
c57f56b7 | 57 | virtual void SetAdditionalLibs(const char *list) {fAdditionalLibs = list;} |
d5c6455a | 58 | virtual void SetAdditionalRootLibs(const char *list) {fAdditionalRootLibs = list;} |
c57f56b7 | 59 | virtual void SetPrice(Int_t price=1) {fPrice = price;} |
a8739e8a | 60 | virtual void SetRunRange(Int_t min, Int_t max) {fRunRange[0] = min; fRunRange[1] = max;} |
c6cb3634 | 61 | virtual void SetJobTag(const char *tag="") {fJobTag = tag;} |
319593fb | 62 | virtual void SetNrunsPerMaster(Int_t nruns=1) {fNrunsPerMaster = nruns;} |
16a4353c | 63 | virtual void SetMaxMergeFiles(Int_t nfiles) {fMaxMergeFiles = nfiles;} |
b3e07543 | 64 | virtual void SetMaxMergeStages(Int_t nstages) {fMaxMergeStages = nstages;} |
c57f56b7 | 65 | virtual void SetSplitMode(const char *type="se") {fSplitMode = type;} |
66 | virtual void SetSplitMaxInputFileNumber(Int_t nfiles=100) {fSplitMaxInputFileNumber = nfiles;} | |
149d288c | 67 | virtual void SetAPIVersion(const char *version) {fAPIVersion = version;} |
68 | virtual void SetROOTVersion(const char *version) {fROOTVersion = version;} | |
69 | virtual void SetAliROOTVersion(const char *version) {fAliROOTVersion=version;} | |
c57f56b7 | 70 | virtual void SetUser(const char *user) {fUser = user;} |
71 | virtual void SetTTL(Int_t ttl=30000) {fTTL = ttl;} | |
72 | virtual void SetGridWorkingDir(const char *name="workdir") {fGridWorkingDir = name;} | |
73 | virtual void SetGridDataDir(const char *name) {fGridDataDir = name;} | |
74 | virtual void SetDataPattern(const char *pattern="*AliESDs.root") {fDataPattern = pattern;} | |
a41b2882 | 75 | virtual void SetFriendChainName(const char *name="", const char *libnames=""); |
bb885a9e | 76 | virtual void SetDefaultOutputs(Bool_t flag); |
c57f56b7 | 77 | virtual void SetGridOutputDir(const char *name="output") {fGridOutputDir = name;} |
149d288c | 78 | virtual void SetOutputArchive(const char *list="log_archive.zip:std*@disk=1 root_archive.zip:*.root@disk=2"); |
79 | virtual void SetOutputFiles(const char *list); | |
cd11251e | 80 | virtual void SetOutputToRunNo(Int_t mode=1) {fOutputToRunNo = mode;} |
c57f56b7 | 81 | virtual void SetInputFormat(const char *format="xml-single") {fInputFormat = format;} |
82 | virtual void SetMaxInitFailed(Int_t nfail=5) {fMaxInitFailed = nfail;} | |
d3b18c4c | 83 | virtual void SetTerminateFiles(const char *list) {fTerminateFiles = list;} |
bb885a9e | 84 | virtual void SetMergeExcludes(const char *list) {fMergeExcludes = list;}; |
0f389141 | 85 | virtual void SetMergeViaJDL(Bool_t on=kTRUE) {fMergeViaJDL = on ? 1 : 0;} |
f47d5cb4 | 86 | virtual void SetMergeDirName(const char *name) {fMergeDirName = name;} |
c57f56b7 | 87 | virtual void SetMasterResubmitThreshold(Int_t percentage) {fMasterResubmitThreshold = percentage;} |
bb885a9e | 88 | virtual void SetNtestFiles(Int_t nfiles) {fNtestFiles = nfiles;} |
149d288c | 89 | virtual void SetNumberOfReplicas(Int_t ncopies) {fNreplicas = TMath::Min(ncopies,4);} |
c57f56b7 | 90 | virtual void SetJDLName(const char *name="analysis.jdl") {fJDLName = name;} |
149d288c | 91 | virtual void SetPreferedSE(const char *se); |
a3e84053 | 92 | virtual void SetProductionMode(Int_t mode=1) {fProductionMode = mode;} |
37d21c01 | 93 | virtual void SetRegisterExcludes(const char *list) {fRegisterExcludes = list;} |
74013535 | 94 | virtual void SetRunPrefix(const char *prefix); |
648174cf | 95 | virtual void SetOutputSingleFolder(const char *folder) {fOutputSingle = folder; fSplitMode="file"; fSplitMaxInputFileNumber=1;} |
0f389141 | 96 | virtual void SetFastReadOption(Bool_t on=kTRUE) {fFastReadOption = on ? 1 : 0;} |
97 | virtual void SetOverwriteMode(Bool_t on=kTRUE) {fOverwriteMode = on ? 1 : 0;} | |
d88e4159 | 98 | virtual void SetDropToShell(Bool_t drop=true) {fDropToShell = drop;} |
780ec36d | 99 | virtual void SetTreeName(const char *name) {fTreeName = name;} |
c57f56b7 | 100 | |
0f389141 | 101 | TGridJDL *GetGridJDL() const {return fGridJDL;} |
102 | TGridJDL *GetMergingJDL() const {return fMergingJDL;} | |
5513444a | 103 | const char *GetGridOutputDir() const {return fGridOutputDir;} |
c57f56b7 | 104 | //Utilities |
77f34eae | 105 | void AddModule(AliAnalysisTaskCfg *module); |
106 | void AddModules(TObjArray *list); | |
3e40fd4c | 107 | AliAnalysisManager *CreateAnalysisManager(const char *name, const char *filename=""); |
77f34eae | 108 | Int_t GetNmodules() const; |
109 | AliAnalysisTaskCfg *GetModule(const char *name); | |
110 | Bool_t LoadModules(); | |
a41b2882 | 111 | Bool_t LoadFriendLibs() const; |
21ca8e59 | 112 | Bool_t GenerateTest(const char *name, const char *modname=""); |
139fe6ba | 113 | Bool_t GenerateTrain(const char *name); |
c57f56b7 | 114 | virtual Bool_t CreateDataset(const char *pattern); |
4a8b667c | 115 | Int_t CopyLocalDataset(const char *griddir, const char *pattern, Int_t nfiles, const char *output="data.txt", const char *archivefile="", const char *outputdir="data"); |
c57f56b7 | 116 | virtual Bool_t CreateJDL(); |
4e5c5506 | 117 | virtual void EnablePackage(const char *package); |
923e2ca5 | 118 | static Bool_t DirectoryExists(const char *lfn); |
5513444a | 119 | static Bool_t FileExists(const char *lfn); |
a03be957 | 120 | static const char *GetJobStatus(Int_t jobidstart, Int_t lastid, Int_t &nrunning, Int_t &nwaiting, Int_t &nerror, Int_t &ndone); |
f790bc1b | 121 | const char *GetListOfFiles(const char *type); |
b3e07543 | 122 | Bool_t CheckMergedFiles(const char *filename, const char *aliendir, Int_t nperchunk, const char *jdl=""); |
105631b5 | 123 | static AliAnalysisManager *LoadAnalysisManager(const char *fname); |
ec5acdce | 124 | static Bool_t MergeInfo(const char *output, const char *collection); |
b3e07543 | 125 | static Bool_t MergeOutput(const char *output, const char *basedir, Int_t nmaxmerge, Int_t stage=0); |
c57f56b7 | 126 | virtual Bool_t MergeOutputs(); |
16a4353c | 127 | virtual void Print(Option_t *option="") const; |
5513444a | 128 | virtual Bool_t StartAnalysis(Long64_t nentries=123456789, Long64_t firstentry=0); |
0f389141 | 129 | static Bool_t SetupPar(const char *package); |
a03be957 | 130 | virtual Bool_t Submit(); |
131 | virtual Bool_t SubmitMerging(); | |
7c2cd90a | 132 | static Int_t SubmitSingleJob(const char *query); |
c57f56b7 | 133 | virtual void WriteAnalysisFile(); |
134 | virtual void WriteAnalysisMacro(); | |
0f389141 | 135 | virtual void WriteMergingMacro(); |
136 | virtual void WriteMergeExecutable(); | |
c57f56b7 | 137 | virtual void WriteExecutable(); |
5513444a | 138 | virtual Bool_t WriteJDL(Bool_t copy); |
139 | virtual void WriteProductionFile(const char *filename) const; | |
0f389141 | 140 | virtual void WriteValidationScript(Bool_t merge=kFALSE); |
c57f56b7 | 141 | |
3bdcb562 | 142 | // PROOF mode |
143 | virtual void SetProofCluster(const char *cluster) {fProofCluster = cluster;} | |
144 | virtual void SetProofDataSet(const char *dataset) {fProofDataSet = dataset;} | |
145 | virtual const char *GetProofDataSet() const {return fProofDataSet.Data();} | |
28ce6c9c | 146 | virtual void SetProofParameter(const char *pname, const char *value); |
147 | const char *GetProofParameter(const char *pname) const; | |
3bdcb562 | 148 | virtual void SetProofReset(Int_t mode) {fProofReset = mode;} |
149 | virtual void SetNproofWorkers(Int_t nworkers) {fNproofWorkers = nworkers;} | |
27734f0e | 150 | virtual void SetNproofWorkersPerSlave(Int_t nworkers) {fNproofWorkersPerSlave = nworkers;} |
874de7ea | 151 | virtual void SetRootVersionForProof(const char *version); |
3bdcb562 | 152 | virtual void SetAliRootMode(const char *mode) {fAliRootMode = mode;} |
d88e4159 | 153 | virtual void SetProofProcessOpt(const char *proofOpt="") {fProofProcessOpt = proofOpt;} |
154 | virtual TString GetProofProcessOpt() {return fProofProcessOpt;} | |
3bdcb562 | 155 | // .txt file containing the list of files to be chained in test mode |
156 | virtual void SetFileForTestMode(const char *filename) {fFileForTestMode = filename;} | |
157 | virtual TChain *GetChainForTestMode(const char *treeName) const; | |
0ad3ea1f | 158 | virtual const TString& GetGridJobIDs() const { return fGridJobIDs; } |
159 | virtual const TString& GetGridStages() const { return fGridStages; } | |
c57f56b7 | 160 | protected: |
161 | void CdWork(); | |
162 | Bool_t CheckInputData(); | |
163 | void CheckDataType(const char *lfn, Bool_t &is_collection, Bool_t &is_xml, Bool_t &use_tags); | |
164 | virtual Bool_t Connect(); | |
165 | virtual void SetDefaults(); | |
a03be957 | 166 | Bool_t SubmitNext(); |
c57f56b7 | 167 | |
c57f56b7 | 168 | Bool_t IsCollection(const char *lfn) const; |
fe2d7fc2 | 169 | virtual Bool_t IsSingleOutput() const; |
c57f56b7 | 170 | Bool_t IsUsingTags() const {return TObject::TestBit(AliAnalysisGrid::kUseTags);} |
77f34eae | 171 | Bool_t LoadModule(AliAnalysisTaskCfg *mod); |
172 | Bool_t CheckDependencies(); | |
b5ae4fe0 | 173 | Bool_t CheckFileCopy(const char *alienpath); |
c57f56b7 | 174 | |
175 | private: | |
176 | TGridJDL *fGridJDL; //! JDL maker | |
0f389141 | 177 | TGridJDL *fMergingJDL; //! JDL maker |
c57f56b7 | 178 | Int_t fPrice; // Grid price for the job; |
179 | Int_t fTTL; // Time to live. | |
180 | Int_t fSplitMaxInputFileNumber; // Maximum number of files to be processed per subjob | |
181 | Int_t fMaxInitFailed; // Maximum initial consecutive subjobs accepted to fail | |
182 | Int_t fMasterResubmitThreshold; // Failed jobs will be resubmitted until this DONE ratio | |
bb885a9e | 183 | Int_t fNtestFiles; // Number of files used in the testing case |
a8739e8a | 184 | Int_t fRunRange[2]; // Run range |
319593fb | 185 | Int_t fNrunsPerMaster; // Number of runs per masterjob |
16a4353c | 186 | Int_t fMaxMergeFiles; // Maximum number of files to be merged in one chunk |
b3e07543 | 187 | Int_t fMaxMergeStages; // Maximum number of merging stages |
d2a409b2 | 188 | Int_t fNsubmitted; // Number of jobs submitted |
a3e84053 | 189 | Int_t fProductionMode; // Production mode (0-off, 1-on) |
cd11251e | 190 | Int_t fOutputToRunNo; // Use run number as output directory |
0f389141 | 191 | Int_t fMergeViaJDL; // Enable merging via automatic JDL |
192 | Int_t fFastReadOption; // Use xrootd tweaks to reduce timeouts in file access | |
193 | Int_t fOverwriteMode; // Overwrite existing files if any | |
149d288c | 194 | Int_t fNreplicas; // Number of replicas for the output files |
3bdcb562 | 195 | Int_t fNproofWorkers; // Number of workers in proof mode |
27734f0e | 196 | Int_t fNproofWorkersPerSlave; // Max number of workers per slave in proof mode |
3bdcb562 | 197 | Int_t fProofReset; // Proof reset mode: 0=no reset, 1=soft, 2=hard |
c57f56b7 | 198 | TString fRunNumbers; // List of runs to be processed |
199 | TString fExecutable; // Executable script for AliEn job | |
0a1c1f7f | 200 | TString fExecutableCommand; // Command(s) to be executed in the executable script |
c57f56b7 | 201 | TString fArguments; // Arguments for the executable script |
631c0b05 | 202 | TString fExecutableArgs; // arguments added to the executable script after the analysis macro |
c57f56b7 | 203 | TString fAnalysisMacro; // Root macro steering the analysis |
204 | TString fAnalysisSource; // User analysis implementation (.cxx) file(s) | |
d3b18c4c | 205 | TString fValidationScript; // Name of the validation script |
d5c6455a | 206 | TString fAdditionalRootLibs; // List (separated by blacs) of additional libraries needed for/before analysis libs/par file compilation |
207 | TString fAdditionalLibs; // List (separated by blacs) of additional libraries needed for the analysis loaded AFTER all par files | |
c57f56b7 | 208 | TString fSplitMode; // Job split mode |
209 | TString fAPIVersion; // API version | |
210 | TString fROOTVersion; // ROOT version | |
211 | TString fAliROOTVersion; // AliROOT version | |
648174cf | 212 | TString fExternalPackages; // External packages |
c57f56b7 | 213 | TString fUser; // AliEn user name |
214 | TString fGridWorkingDir; // AliEn directory containing the input packages | |
215 | TString fGridDataDir; // AliEn data production directory | |
216 | TString fDataPattern; // Data pattern for 'find' command | |
217 | TString fGridOutputDir; // AliEn directory (wrt work dir) where the output should be written | |
218 | TString fOutputArchive; // List of output archives separated by blancs | |
219 | TString fOutputFiles; // List of output files separated by blancs | |
220 | TString fInputFormat; // Input format (xml-single) | |
221 | TString fDatasetName; // Dataset xml file to be created | |
222 | TString fJDLName; // JDL file to be generated | |
d3b18c4c | 223 | TString fTerminateFiles; // List of output files produced during Terminate |
bb885a9e | 224 | TString fMergeExcludes; // List of output files excluded from merging |
37d21c01 | 225 | TString fRegisterExcludes; // List of liles not to be registered/merged |
f965131e | 226 | TString fIncludePath; // Include path |
bb885a9e | 227 | TString fCloseSE; // Preffered storage element. Taken from alien_CLOSE_SE environment. |
0df6ccf2 | 228 | TString fFriendChainName; // File name to construct friend chain (for AOD) |
c6cb3634 | 229 | TString fJobTag; // Job tag |
648174cf | 230 | TString fOutputSingle; // Directory name for the output when split is per file |
5fce53f4 | 231 | TString fRunPrefix; // Run prefix to be applied to run numbers |
3bdcb562 | 232 | TString fProofCluster; // Proof cluster name |
233 | TString fProofDataSet; // Proof dataset to be used | |
234 | TString fFileForTestMode; // .txt file for the chain to be used in PROOF test mode | |
3bdcb562 | 235 | TString fAliRootMode; // AliRoot mode among the list supported by the proof cluster |
d88e4159 | 236 | TString fProofProcessOpt; // Option passed to proof process |
f47d5cb4 | 237 | TString fMergeDirName; // Name of the directory that should be added to the output directory |
c57f56b7 | 238 | TObjArray *fInputFiles; // List of input files to be processed by the job |
4e5c5506 | 239 | TObjArray *fPackages; // List of packages to be used |
77f34eae | 240 | TObjArray *fModules; // List of AliAnalysisTaskCfg modules |
28ce6c9c | 241 | TMap fProofParam; // Key-value pairs for proof mode |
d88e4159 | 242 | Bool_t fDropToShell; // If true, execute aliensh on start |
0ad3ea1f | 243 | TString fGridJobIDs; // List of last committed jobs |
244 | TString fGridStages; // List of last committed jobs | |
a41b2882 | 245 | TString fFriendLibs; // List of libs (separated by blacs) needed for friends processing |
780ec36d | 246 | TString fTreeName; // Name of the tree to be analyzed |
0ad3ea1f | 247 | |
780ec36d | 248 | ClassDef(AliAnalysisAlien, 25) // Class providing some AliEn utilities |
c57f56b7 | 249 | }; |
250 | #endif |