remove bad modules BEFORE cleaning digits

[u/mrichter/AliRoot.git] / PHOS / AliPHOSDigitizer.cxx

/**************************************************************************
 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
 *                                                                        *
 * Author: The ALICE Off-line Project.                                    *
 * Contributors are mentioned in the code where appropriate.              *
 *                                                                        *
 * Permission to use, copy, modify and distribute this software and its   *
 * documentation strictly for non-commercial purposes is hereby granted   *
 * without fee, provided that the above copyright notice appears in all   *
 * copies and that both the copyright notice and this permission notice   *
 * appear in the supporting documentation. The authors make no claims     *
 * about the suitability of this software for any purpose. It is          *
 * provided "as is" without express or implied warranty.                  *
 **************************************************************************/

/* $Id$ */

/* History of cvs commits:
 *
 * $Log: AliPHOSDigitizer.cxx,v $
 * Revision 1.104  2007/12/18 09:08:18  hristov
 * Splitting of the QA maker into simulation and reconstruction dependent parts (Yves)
 *
 * Revision 1.103  2007/11/07 11:25:06  schutz
 * Comment out the QA checking before starting digitization
 *
 * Revision 1.102  2007/10/19 18:04:29  schutz
 * The standalone QA data maker is called from AliSimulation and AliReconstruction outside the event loop; i.e. re-reading the data. The QA data making in the event loop has been commented out.
 *
 * Revision 1.101  2007/10/14 21:08:10  schutz
 * Introduced the checking of QA results from previous step before entering the event loop
 *
 * Revision 1.100  2007/10/10 09:05:10  schutz
 * Changing name QualAss to QA
 *
 * Revision 1.99  2007/09/30 17:08:20  schutz
 * Introducing the notion of QA data acquisition cycle (needed by online)
 *
 * Revision 1.98  2007/09/26 14:22:17  cvetan
 * Important changes to the reconstructor classes. Complete elimination of the run-loaders, which are now steered only from AliReconstruction. Removal of the corresponding Reconstruct() and FillESD() methods.
 *
 * Revision 1.97  2007/08/07 14:12:03  kharlov
 * Quality assurance added (Yves Schutz)
 *
 * Revision 1.96  2007/04/28 10:43:36  policheh
 * Dead channels simulation: digit energy sets to 0.
 *
 * Revision 1.95  2007/04/10 07:20:52  kharlov
 * Decalibration should use the same CDB as calibration in AliPHOSClusterizerv1
 *
 * Revision 1.94  2007/02/01 10:34:47  hristov
 * Removing warnings on Solaris x86
 *
 * Revision 1.93  2006/10/17 13:17:01  kharlov
 * Replace AliInfo by AliDebug
 *
 * Revision 1.92  2006/08/28 10:01:56  kharlov
 * Effective C++ warnings fixed (Timur Pocheptsov)
 *
 * Revision 1.91  2006/04/29 20:25:30  hristov
 * Decalibration is implemented (Yu.Kharlov)
 *
 * Revision 1.90  2006/04/22 10:30:17  hristov
 * Add fEnergy to AliPHOSDigit and operate with EMC amplitude in energy units (Yu.Kharlov)
 *
 * Revision 1.89  2006/04/11 15:22:59  hristov
 * run number in query set to -1: forces AliCDBManager to use its run number (A.Colla)
 *
 * Revision 1.88  2006/03/13 14:05:43  kharlov
 * Calibration objects for EMC and CPV
 *
 * Revision 1.87  2005/08/24 15:33:49  kharlov
 * Calibration data for raw digits
 *
 * Revision 1.86  2005/07/12 20:07:35  hristov
 * Changes needed to run simulation and reconstrruction in the same AliRoot session
 *
 * Revision 1.85  2005/05/28 14:19:04  schutz
 * Compilation warnings fixed by T.P.
 *
 */

//_________________________________________________________________________
//*-- Author :  Dmitri Peressounko (SUBATECH & Kurchatov Institute) 
//////////////////////////////////////////////////////////////////////////////
// This TTask performs digitization of Summable digits (in the PHOS case it is just
// the sum of contributions from all primary particles into a given cell). 
// In addition it performs mixing of summable digits from different events.
// The name of the TTask is also the title of the branch that will contain 
// the created SDigits
// The title of the TTAsk is the name of the file that contains the hits from
// which the SDigits are created
//
// For each event two branches are created in TreeD:
//   "PHOS" - list of digits
//   "AliPHOSDigitizer" - AliPHOSDigitizer with all parameters used in digitization
//
// Note, that one can set a title for new digits branch, and repeat digitization with
// another set of parameters.
//
// Use case:
// root[0] AliPHOSDigitizer * d = new AliPHOSDigitizer() ;
// root[1] d->ExecuteTask()             
// Warning in <TDatabasePDG::TDatabasePDG>: object already instantiated
//                       //Digitizes SDigitis in all events found in file galice.root 
//
// root[2] AliPHOSDigitizer * d1 = new AliPHOSDigitizer("galice1.root") ;  
//                       // Will read sdigits from galice1.root
// root[3] d1->MixWith("galice2.root")       
// Warning in <TDatabasePDG::TDatabasePDG>: object already instantiated
//                       // Reads another set of sdigits from galice2.root
// root[3] d1->MixWith("galice3.root")       
//                       // Reads another set of sdigits from galice3.root
// root[4] d->ExecuteTask("deb timing")    
//                       // Reads SDigits from files galice1.root, galice2.root ....
//                       // mixes them and stores produced Digits in file galice1.root          
//                       // deb - prints number of produced digits
//                       // deb all - prints list of produced digits
//                       // timing  - prints time used for digitization
//

// --- ROOT system ---
#include "TTree.h"
#include "TSystem.h"
#include "TBenchmark.h"
#include "TRandom.h"

// --- Standard library ---

// --- AliRoot header files ---
#include "AliLog.h"
#include "AliRunDigitizer.h"
#include "AliPHOSDigit.h"
#include "AliPHOSGetter.h"
#include "AliPHOSDigitizer.h"
#include "AliPHOSSDigitizer.h"
#include "AliPHOSGeometry.h"
#include "AliPHOSTick.h"

ClassImp(AliPHOSDigitizer)


//____________________________________________________________________________ 
AliPHOSDigitizer::AliPHOSDigitizer() :
  AliDigitizer("",""),
  fDefaultInit(kTRUE),
  fDigitsInRun(0),
  fInit(kFALSE),
  fInput(0),
  fInputFileNames(0x0),
  fEventNames(0x0),
  fEmcCrystals(0),
  fPinNoise(0.f),
  fEMCDigitThreshold(0.f),
  fCPVNoise(0.f),
  fCPVDigitThreshold(0.f),
  fTimeResolution(0.f),
  fTimeThreshold(0.f),
  fTimeSignalLength(0.f),
  fADCchanelEmc(0.f),
  fADCpedestalEmc(0.f),
  fNADCemc(0),
  fADCchanelCpv(0.f),
  fADCpedestalCpv(0.f),
  fNADCcpv(0),
  fEventFolderName(""),
  fFirstEvent(0),
  fLastEvent(0), 
//  fQADM (0x0), 
  fEventCounter(0)
{
  // ctor
  InitParameters() ; 
  fManager = 0 ;                     // We work in the standalong mode
}

//____________________________________________________________________________ 
AliPHOSDigitizer::AliPHOSDigitizer(TString alirunFileName, 
				   TString eventFolderName):
  AliDigitizer("PHOS"+AliConfig::Instance()->GetDigitizerTaskName(), alirunFileName), 
  fDefaultInit(kFALSE),
  fDigitsInRun(0),
  fInit(kFALSE),
  fInput(0),
  fInputFileNames(0x0),
  fEventNames(0x0),
  fEmcCrystals(0),
  fPinNoise(0.f),
  fEMCDigitThreshold(0.f),
  fCPVNoise(0.f),
  fCPVDigitThreshold(0.f),
  fTimeResolution(0.f),
  fTimeThreshold(0.f),
  fTimeSignalLength(0.f),
  fADCchanelEmc(0.f),
  fADCpedestalEmc(0.f),
  fNADCemc(0),
  fADCchanelCpv(0.f),
  fADCpedestalCpv(0.f),
  fNADCcpv(0),
  fEventFolderName(eventFolderName),
  fFirstEvent(0),
  fLastEvent(0), 
//  fQADM (0x0), 
  fEventCounter(0)
{
  // ctor
  InitParameters() ; 
  Init() ;
  fDefaultInit = kFALSE ; 
  fManager = 0 ;                     // We work in the standalong mode
 // //Initialize the quality assurance data maker only once
//  fQADM = new AliPHOSQADataMaker() ;  
//  //FIXME: get the run number
//  Int_t run = 0 ;
//  //EMXIF 	
//   GetQADataMaker()->Init(AliQA::kDIGITS, run, fgkCycles) ;    
//   GetQADataMaker()->StartOfCycle(AliQA::kDIGITS) ;    
}

//____________________________________________________________________________ 
AliPHOSDigitizer::AliPHOSDigitizer(const AliPHOSDigitizer & d) : 
  AliDigitizer(d),
  fDefaultInit(d.fDefaultInit),
  fDigitsInRun(d.fDigitsInRun),
  fInit(d.fInit),
  fInput(d.fInput),
  fInputFileNames(0x0),//?
  fEventNames(0x0),//?
  fEmcCrystals(d.fEmcCrystals),
  fPinNoise(d.fPinNoise),
  fEMCDigitThreshold(d.fEMCDigitThreshold),
  fCPVNoise(d.fCPVNoise),
  fCPVDigitThreshold(d.fCPVDigitThreshold),
  fTimeResolution(d.fTimeResolution),
  fTimeThreshold(d.fTimeThreshold),
  fTimeSignalLength(d.fTimeSignalLength),
  fADCchanelEmc(d.fADCchanelEmc),
  fADCpedestalEmc(d.fADCpedestalEmc),
  fNADCemc(d.fNADCemc),
  fADCchanelCpv(d.fADCchanelCpv),
  fADCpedestalCpv(d.fADCpedestalCpv),
  fNADCcpv(d.fNADCcpv),
  fEventFolderName(d.fEventFolderName),
  fFirstEvent(d.fFirstEvent),
  fLastEvent(d.fLastEvent), 
//  fQADM (d.fQADM), 
  fEventCounter(0)

{
  // copyy ctor 
  SetName(d.GetName()) ; 
  SetTitle(d.GetTitle()) ; 
//Initialize the quality assurance data maker only once
 //FIXME: get the run number
//  Int_t run = 0 ;
//  //EMXIF 	
//  GetQADataMaker()->Init(AliQA::kDIGITS, run, fgkCycles) ;    
//  GetQADataMaker()->StartOfCycle(AliQA::kDIGITS) ;    
}

//____________________________________________________________________________ 
AliPHOSDigitizer::AliPHOSDigitizer(AliRunDigitizer * rd) :
  AliDigitizer(rd,"PHOS"+AliConfig::Instance()->GetDigitizerTaskName()),
  fDefaultInit(kFALSE),
  fDigitsInRun(0),
  fInit(kFALSE),
  fInput(0),
  fInputFileNames(0x0),
  fEventNames(0x0),
  fEmcCrystals(0),
  fPinNoise(0.f),
  fEMCDigitThreshold(0.f),
  fCPVNoise(0.f),
  fCPVDigitThreshold(0.f),
  fTimeResolution(0.f),
  fTimeThreshold(0.f),
  fTimeSignalLength(0.f),
  fADCchanelEmc(0.f),
  fADCpedestalEmc(0.f),
  fNADCemc(0),
  fADCchanelCpv(0.f),
  fADCpedestalCpv(0.f),
  fNADCcpv(0),
  fEventFolderName(fManager->GetInputFolderName(0)),
  fFirstEvent(0),
  fLastEvent(0), 
//  fQADM (0x0), 
  fEventCounter(0)

{
  // ctor Init() is called by RunDigitizer
  fManager = rd ; 
  SetTitle(dynamic_cast<AliStream*>(fManager->GetInputStream(0))->GetFileName(0));
  InitParameters() ; 
  fDefaultInit = kFALSE ; 
//Initialize the quality assurance data maker only once
//  fQADM = new AliPHOSQADataMaker() ;  
// //FIXME: get the run number
//  Int_t run = 0 ;
//  //EMXIF 	
//  GetQADataMaker()->Init(AliQA::kDIGITS, run) ;    
//  GetQADataMaker()->StartOfCycle(AliQA::kDIGITS) ;    
}

//____________________________________________________________________________ 
  AliPHOSDigitizer::~AliPHOSDigitizer()
{
  AliPHOSGetter * gime = AliPHOSGetter::Instance(GetTitle()) ;

  // Clean Digitizer from the white board
  gime->PhosLoader()->CleanDigitizer() ;
  // dtor
  delete [] fInputFileNames ; 
  delete [] fEventNames ; 

//  delete fQADM ; 

}

//____________________________________________________________________________
void AliPHOSDigitizer::Digitize(Int_t event) 
{ 
  
  // Makes the digitization of the collected summable digits.
  //  It first creates the array of all PHOS modules
  //  filled with noise (different for EMC, and CPV) and
  //  then adds contributions from SDigits. 
  // This design avoids scanning over the list of digits to add 
  // contribution to new SDigits only.

  AliPHOSGetter * gime = AliPHOSGetter::Instance(GetTitle()) ; 
  Int_t ReadEvent = event ; 
  if (fManager) 
    ReadEvent = dynamic_cast<AliStream*>(fManager->GetInputStream(0))->GetCurrentEventNumber() ; 
  AliDebug(1,Form("Adding event %d from input stream 0 %s %s", 
		  ReadEvent, GetTitle(), fEventFolderName.Data())) ; 
  gime->Event(ReadEvent, "S") ;
  TClonesArray * digits = gime->Digits() ; 
  digits->Clear() ;

  const AliPHOSGeometry *geom = gime->PHOSGeometry() ; 
  //Making digits with noise, first EMC
  Int_t nEMC = geom->GetNModules()*geom->GetNPhi()*geom->GetNZ();
  
  Int_t nCPV ;
  Int_t absID ;
  
  nCPV = nEMC + geom->GetNumberOfCPVPadsZ() * geom->GetNumberOfCPVPadsPhi() * geom->GetNModules() ;
  
  digits->Expand(nCPV) ;

  // get first the sdigitizer from the tasks list 
  if ( !gime->SDigitizer() ) 
    gime->LoadSDigitizer();
  AliPHOSSDigitizer * sDigitizer = gime->SDigitizer(); 

  if ( !sDigitizer )
    AliFatal(Form("SDigitizer with name %s %s not found", 
		  GetTitle(), fEventFolderName.Data() )) ; 

  //take all the inputs to add together and load the SDigits
  TObjArray * sdigArray = new TObjArray(fInput) ;
  sdigArray->AddAt(gime->SDigits(), 0) ;
  Int_t i ;
  for(i = 1 ; i < fInput ; i++){
    TString tempo(fEventNames[i]) ; 
    tempo += i ;
    AliPHOSGetter * gime1 = AliPHOSGetter::Instance(fInputFileNames[i], tempo) ;
    if (fManager) 
      ReadEvent = dynamic_cast<AliStream*>(fManager->GetInputStream(i))->GetCurrentEventNumber() ; 
    AliInfo(Form("Adding event %d from input stream %d %s %s", 
		 ReadEvent, i, fInputFileNames[i].Data(), tempo.Data())) ; 
    gime1->Event(ReadEvent,"S");
    sdigArray->AddAt(gime1->SDigits(), i) ;
  }

  //Find the first crystal with signal
  Int_t nextSig = 200000 ; 
  TClonesArray * sdigits ;  
  for(i = 0 ; i < fInput ; i++){
    sdigits = dynamic_cast<TClonesArray *>(sdigArray->At(i)) ;
    if ( !sdigits->GetEntriesFast() )
      continue ; 
    Int_t curNext = dynamic_cast<AliPHOSDigit *>(sdigits->At(0))->GetId() ;
    if(curNext < nextSig) 
      nextSig = curNext ;
  }
  
  TArrayI index(fInput) ;
  index.Reset() ;  //Set all indexes to zero
  
  AliPHOSDigit * digit ;
  AliPHOSDigit * curSDigit ;
  
  TClonesArray * ticks = new TClonesArray("AliPHOSTick",1000) ;
  
  //Put Noise contribution
  for(absID = 1 ; absID <= nEMC ; absID++){
    Float_t noise = gRandom->Gaus(0., fPinNoise) ; 
    // YVK: do not digitize amplitudes for EMC
//     new((*digits)[absID-1]) AliPHOSDigit( -1, absID, sDigitizer->Digitize(noise), TimeOfNoise() ) ;
    new((*digits)[absID-1]) AliPHOSDigit( -1, absID, noise, TimeOfNoise() ) ;
    //look if we have to add signal?
    digit = dynamic_cast<AliPHOSDigit *>(digits->At(absID-1)) ;
    
    if(absID==nextSig){
      //Add SDigits from all inputs 
      ticks->Clear() ;
      Int_t contrib = 0 ;
      Float_t a = digit->GetEnergy() ;
      Float_t b = TMath::Abs( a / fTimeSignalLength) ;
      //Mark the beginning of the signal
      new((*ticks)[contrib++]) AliPHOSTick(digit->GetTime(),0, b);  
      //Mark the end of the signal     
      new((*ticks)[contrib++]) AliPHOSTick(digit->GetTime()+fTimeSignalLength, -a, -b); 
      
      //loop over inputs
      for(i = 0 ; i < fInput ; i++){
	if( dynamic_cast<TClonesArray *>(sdigArray->At(i))->GetEntriesFast() > index[i] )
	  curSDigit = dynamic_cast<AliPHOSDigit*>(dynamic_cast<TClonesArray *>(sdigArray->At(i))->At(index[i])) ; 	
	else
	  curSDigit = 0 ;
	//May be several digits will contribute from the same input
	while(curSDigit && curSDigit->GetId() == absID){	   
	  //Shift primary to separate primaries belonging different inputs
	  Int_t primaryoffset ;
	  if(fManager)
	    primaryoffset = fManager->GetMask(i) ; 
	  else
	    primaryoffset = 10000000*i ;
	  curSDigit->ShiftPrimary(primaryoffset) ;
	  
	  a = curSDigit->GetEnergy() ;
	  b = a /fTimeSignalLength ;
	  new((*ticks)[contrib++]) AliPHOSTick(curSDigit->GetTime(),0, b);  
	  new((*ticks)[contrib++]) AliPHOSTick(curSDigit->GetTime()+fTimeSignalLength, -a, -b); 
	  
	  *digit += *curSDigit ;  //add energies

	  index[i]++ ;
	  if( dynamic_cast<TClonesArray *>(sdigArray->At(i))->GetEntriesFast() > index[i] )
	    curSDigit = dynamic_cast<AliPHOSDigit*>(dynamic_cast<TClonesArray *>(sdigArray->At(i))->At(index[i])) ; 	
	  else
	    curSDigit = 0 ;
	}
      }
      
      //calculate and set time
      Float_t time = FrontEdgeTime(ticks) ;
      digit->SetTime(time) ;
      
      //Find next signal module
      nextSig = 200000 ;
      for(i = 0 ; i < fInput ; i++){
	sdigits = dynamic_cast<TClonesArray *>(sdigArray->At(i)) ;
	Int_t curNext = nextSig ;
	if(sdigits->GetEntriesFast() > index[i] ){
	  curNext = dynamic_cast<AliPHOSDigit *>(sdigits->At(index[i]))->GetId() ;
	}
	if(curNext < nextSig) nextSig = curNext ;
      }
    }
  }
  
  ticks->Delete() ;
  delete ticks ;
  
  //Now CPV digits (different noise and no timing)
  for(absID = nEMC+1; absID <= nCPV; absID++){
    Float_t noise = gRandom->Gaus(0., fCPVNoise) ; 
    new((*digits)[absID-1]) AliPHOSDigit( -1,absID,sDigitizer->Digitize(noise), TimeOfNoise() ) ;
    //look if we have to add signal?
    if(absID==nextSig){
      digit = dynamic_cast<AliPHOSDigit *>(digits->At(absID-1)) ;
      //Add SDigits from all inputs
      for(i = 0 ; i < fInput ; i++){
	if( dynamic_cast<TClonesArray *>(sdigArray->At(i))->GetEntriesFast() > index[i] )
	  curSDigit = dynamic_cast<AliPHOSDigit*>( dynamic_cast<TClonesArray *>(sdigArray->At(i))->At(index[i])) ; 	
	else
	  curSDigit = 0 ;

	//May be several digits will contribute from the same input
	while(curSDigit && curSDigit->GetId() == absID){	   
	  //Shift primary to separate primaries belonging different inputs
	  Int_t primaryoffset ;
	  if(fManager)
	    primaryoffset = fManager->GetMask(i) ; 
	  else
	    primaryoffset = 10000000*i ;
	  curSDigit->ShiftPrimary(primaryoffset) ;

	  //add energies
	  *digit += *curSDigit ;  
	  index[i]++ ;
	  if( dynamic_cast<TClonesArray *>(sdigArray->At(i))->GetEntriesFast() > index[i] )
	    curSDigit = dynamic_cast<AliPHOSDigit*>( dynamic_cast<TClonesArray *>(sdigArray->At(i))->At(index[i]) ) ; 	
	  else
	    curSDigit = 0 ;
	}
      }

      //Find next signal module
      nextSig = 200000 ;
      for(i = 0 ; i < fInput ; i++){
	sdigits = dynamic_cast<TClonesArray *>(sdigArray->At(i)) ;
	Int_t curNext = nextSig ;
	if(sdigits->GetEntriesFast() > index[i] )
	  curNext = dynamic_cast<AliPHOSDigit *>( sdigits->At(index[i]) )->GetId() ;
	if(curNext < nextSig) nextSig = curNext ;
      }
      
    }
  }

  delete sdigArray ; //We should not delete its contents 
  
  Int_t relId[4];

  //set amplitudes in bad channels to zero
  if(!gime->CalibData()) {
    AliPHOSCalibData* cdb = new AliPHOSCalibData(-1);
    gime->SetCalibData(cdb);
  }
  for(i = 0 ; i <digits->GetEntries(); i++){
    digit = dynamic_cast<AliPHOSDigit*>( digits->At(i) ) ;
    gime->PHOSGeometry()->AbsToRelNumbering(digit->GetId(),relId);
    if(relId[1] == 0) // Emc
      if(gime->CalibData()->IsBadChannelEmc(relId[0],relId[3],relId[2])) digit->SetEnergy(0.); 
  }

  //remove digits below thresholds
  for(i = 0 ; i < nEMC ; i++){
    digit = dynamic_cast<AliPHOSDigit*>( digits->At(i) ) ;
//By default no decalibration should be applyed
//    DecalibrateEMC(digit);

    if(digit->GetEnergy() < fEMCDigitThreshold)
      digits->RemoveAt(i) ;
    else
      digit->SetTime(gRandom->Gaus(digit->GetTime(),fTimeResolution) ) ;
  }

  for(i = nEMC; i < nCPV ; i++)
//     if( sDigitizer->Calibrate( dynamic_cast<AliPHOSDigit*>(digits->At(i))->GetAmp() ) < fCPVDigitThreshold )
    if( dynamic_cast<AliPHOSDigit*>(digits->At(i))->GetEnergy() < fCPVDigitThreshold )
      digits->RemoveAt(i) ;
    
  digits->Compress() ;  
  
  Int_t ndigits = digits->GetEntriesFast() ;
  digits->Expand(ndigits) ;

  //Set indexes in list of digits and make true digitization of the energy
  for (i = 0 ; i < ndigits ; i++) { 
    digit = dynamic_cast<AliPHOSDigit*>( digits->At(i) ) ; 
    digit->SetIndexInList(i) ;     
    if(digit->GetId() > fEmcCrystals){ //digitize CPV only
      digit->SetAmp(DigitizeCPV(digit->GetEnergy(),digit->GetId()) ) ;
    }
  }
}

//____________________________________________________________________________
void AliPHOSDigitizer::DecalibrateEMC(AliPHOSDigit *digit)
{
  // Decalibrate EMC digit, i.e. change its energy by a factor read from CDB

  AliPHOSGetter* gime = AliPHOSGetter::Instance();

  if(!gime->CalibData()) {
    AliPHOSCalibData* cdb = new AliPHOSCalibData(-1);
    gime->SetCalibData(cdb);
  }

  //Determine rel.position of the cell absolute ID
  Int_t relId[4];
  gime->PHOSGeometry()->AbsToRelNumbering(digit->GetId(),relId);
  Int_t module=relId[0];
  Int_t row   =relId[2];
  Int_t column=relId[3];
  Float_t decalibration = gime->CalibData()->GetADCchannelEmc(module,column,row);
  Float_t energy = digit->GetEnergy() / decalibration;
  digit->SetEnergy(energy);
}
//____________________________________________________________________________
Int_t AliPHOSDigitizer::DigitizeCPV(Float_t charge, Int_t absId)
{
  // Returns digitized value of the CPV charge in a pad absId

  AliPHOSGetter* gime = AliPHOSGetter::Instance();

  if(!gime->CalibData()) {
    AliPHOSCalibData* cdb = new AliPHOSCalibData(-1); // use AliCDBManager's run number
    gime->SetCalibData(cdb);
  }

  //Determine rel.position of the cell absId
  Int_t relId[4];
  gime->PHOSGeometry()->AbsToRelNumbering(absId,relId);
  Int_t module=relId[0];
  Int_t row   =relId[2];
  Int_t column=relId[3];
  
  Int_t channel = 0;
  
  if(absId > fEmcCrystals){ //digitize CPV only

    //reading calibration data for cell absId.
    //If no calibration DB found, accept default values.

    if(gime->CalibData()) {
      fADCpedestalCpv = gime->CalibData()->GetADCpedestalCpv(module,column,row);
      fADCchanelCpv   = gime->CalibData()->GetADCchannelCpv( module,column,row);
    }

    channel = (Int_t) TMath::Ceil((charge - fADCpedestalCpv)/fADCchanelCpv) ;       
    if(channel > fNADCcpv ) channel =  fNADCcpv ;
  }
  return channel ;
}

//____________________________________________________________________________
void AliPHOSDigitizer::Exec(Option_t *option) 
{ 
  // Steering method to process digitization for events
  // in the range from fFirstEvent to fLastEvent.
  // This range is optionally set by SetEventRange().
  // if fLastEvent=-1, then process events until the end.
  // by default fLastEvent = fFirstEvent (process only one event)

  if (!fInit) { // to prevent overwrite existing file
    AliError(Form("Give a version name different from %s", 
		  fEventFolderName.Data() )) ;
    return ;
  }   

  if (strstr(option,"print")) {
    Print();
    return ; 
  }
  
 // // check the QA result for Hits and SDigits
//  AliQA * qa = AliQA::Instance(AliQA::kPHOS) ; 
//  if ( qa->IsSet(AliQA::kPHOS, AliQA::kSIM, AliQA::kFATAL)) {
//	AliFatal("QA status in Hits and/or SDIGITS was Fatal") ;
//  } else if ( qa->IsSet(AliQA::kPHOS, AliQA::kSIM, AliQA::kERROR)) {
//	AliError("QA status in Hits and/or SDIGITS was Error") ;
//  } else if ( qa->IsSet(AliQA::kPHOS, AliQA::kSIM, AliQA::kWARNING) ) {
//	AliWarning("QA status in Hits and/or SDIGITS was Warning") ;
//  } else if ( qa->IsSet(AliQA::kPHOS, AliQA::kSIM, AliQA::kINFO) ) {
//	AliInfo("QA status in Hits and/or SDIGITS was Info") ;
//  }
   
 if(strstr(option,"tim"))
     gBenchmark->Start("PHOSDigitizer");
  
  AliPHOSGetter * gime = AliPHOSGetter::Instance(GetTitle()) ;

  // Post Digitizer to the white board
  gime->PostDigitizer(this) ;
  
  if (fLastEvent == -1) 
    fLastEvent = gime->MaxEvent() - 1 ;
  else if (fManager) 
    fLastEvent = fFirstEvent ; 
 
  Int_t nEvents   = fLastEvent - fFirstEvent + 1;
  
  Int_t ievent ;

  for (ievent = fFirstEvent; ievent <= fLastEvent; ievent++) {
    fEventCounter++ ; 
    gime->Event(ievent,"S") ;

    Digitize(ievent) ; //Add prepared SDigits to digits and add the noise

//    //makes the quality assurance data
//    if (GetQADataMaker()->IsCycleDone() ) {
//      GetQADataMaker()->EndOfCycle(AliQA::kDIGITS) ; 
//	  GetQADataMaker()->StartOfCycle(AliQA::kDIGITS) ; 
//    }
//    GetQADataMaker()->Exec(AliQA::kDIGITS, gime->Digits()) ; 
//	GetQADataMaker()->Increment() ;
				   
    WriteDigits() ;

    if(strstr(option,"deb"))
      PrintDigits(option);
    
    //increment the total number of Digits per run 
    fDigitsInRun += gime->Digits()->GetEntriesFast() ;  
 }
 
//   //Write the quality assurance data only after the last event 
// if ( fEventCounter == gime->MaxEvent() ) { 
//    GetQADataMaker()->EndOfCycle(AliQA::kDIGITS) ;    
//	GetQADataMaker()->Finish() ;
//  }
  
  gime->PhosLoader()->CleanDigitizer();

  if(strstr(option,"tim")){
    gBenchmark->Stop("PHOSDigitizer");
    TString message ; 
    message = "  took %f seconds for Digitizing %f seconds per event\n" ; 
    AliInfo(Form( message.Data(), 
	 gBenchmark->GetCpuTime("PHOSDigitizer"), 
	 gBenchmark->GetCpuTime("PHOSDigitizer")/nEvents )); 
  } 
}

//____________________________________________________________________________ 
Float_t AliPHOSDigitizer::FrontEdgeTime(TClonesArray * ticks) const
{
  // Returns the shortest time among all time ticks

  ticks->Sort() ; //Sort in accordance with times of ticks
  TIter it(ticks) ;
  AliPHOSTick * ctick = (AliPHOSTick *) it.Next() ;
  Float_t time = ctick->CrossingTime(fTimeThreshold) ;    

  AliPHOSTick * t ;  
  while((t=(AliPHOSTick*) it.Next())){
    if(t->GetTime() < time)  //This tick starts before crossing
      *ctick+=*t ;
    else
      return time ;

    time = ctick->CrossingTime(fTimeThreshold) ;    
  }
  return time ;
}

//____________________________________________________________________________ 
Bool_t AliPHOSDigitizer::Init()
{
  // Makes all memory allocations
  fInit = kTRUE ; 
  AliPHOSGetter * gime = AliPHOSGetter::Instance(GetTitle(), fEventFolderName) ; 
  if ( gime == 0 ) {
    AliFatal(Form("Could not obtain the Getter object for file %s and event %s !", 
		  GetTitle(), fEventFolderName.Data()));  
    return kFALSE;
  } 
  
  const AliPHOSGeometry * geom = gime->PHOSGeometry() ;

  fEmcCrystals = geom->GetNModules() * geom->GetNCristalsInModule() ;
  
  TString opt("Digits") ; 
  if(gime->VersionExists(opt) ) { 
    AliError(Form("Give a version name different from %s", 
		  fEventFolderName.Data() )) ;
    fInit = kFALSE ; 
  }

  fFirstEvent = 0 ; 
  fLastEvent = fFirstEvent ; 
  if (fManager) 
    fInput = fManager->GetNinputs() ; 
  else 
    fInput           = 1 ;
  
  fInputFileNames  = new TString[fInput] ; 
  fEventNames      = new TString[fInput] ; 
  fInputFileNames[0] = GetTitle() ; 
  fEventNames[0]     = fEventFolderName.Data() ; 
  Int_t index ; 
  for (index = 1 ; index < fInput ; index++) {
    fInputFileNames[index] = dynamic_cast<AliStream*>(fManager->GetInputStream(index))->GetFileName(0); 
    TString tempo = fManager->GetInputFolderName(index) ;
    fEventNames[index] = tempo.Remove(tempo.Length()-1) ; // strip of the stream number added by fManager
  }

  //to prevent cleaning of this object while GetEvent is called
  gime->PhosLoader()->GetDigitsDataLoader()->GetBaseTaskLoader()->SetDoNotReload(kTRUE);

  return fInit ; 
}

//____________________________________________________________________________ 
void AliPHOSDigitizer::InitParameters()
{
  // Set initial parameters Digitizer

  fPinNoise           = 0.004 ;  // [GeV]
  fEMCDigitThreshold  = 0.012 ;  // [GeV]
  fCPVNoise           = 0.01;    // [aux units]
  fCPVDigitThreshold  = 0.09 ;   // [aux units]
  fTimeResolution     = 0.5e-9 ; // [sec]
  fTimeSignalLength   = 1.0e-9 ; // [sec]
  fDigitsInRun  = 0 ; 
  fADCchanelEmc = 1.0;        // Coefficient between real and measured energies in EMC
  fADCpedestalEmc = 0. ;      //
  fNADCemc = (Int_t) TMath::Power(2,16) ;  // number of channels in EMC ADC

  fADCchanelCpv = 0.0012 ;          // width of one ADC channel in CPV 'popugais'
  fADCpedestalCpv = 0.012 ;         // 
  fNADCcpv = (Int_t) TMath::Power(2,12);      // number of channels in CPV ADC

//   fTimeThreshold = 0.001*10000000 ; //Means 1 MeV in terms of SDigits amplitude
  fTimeThreshold = 0.001 ; // [GeV]
  SetEventRange(0,-1) ;
    
}

//__________________________________________________________________
void AliPHOSDigitizer::MixWith(TString alirunFileName, TString eventFolderName)
{
  // Allows to produce digits by superimposing background and signal event.
  // It is assumed, that headers file with SIGNAL events is opened in 
  // the constructor. 
  // Sets the BACKGROUND event, with which the SIGNAL event is to be mixed 
  // Thus we avoid writing (changing) huge and expensive 
  // backgound files: all output will be writen into SIGNAL, i.e. 
  // opened in constructor file. 
  //
  // One can open as many files to mix with as one needs.
  // However only Sdigits with the same name (i.e. constructed with the same SDigitizer)
  // can be mixed.

  if( strcmp(fEventFolderName, "") == 0 )
    Init() ;

  if(fManager){
    Warning("MixWith", "Cannot use this method with AliRunDigitizer\n" ) ;
    return ;
  }
  // looking for file which contains AliRun
  if (gSystem->AccessPathName(alirunFileName)) {// file does not exist
    AliError(Form("File %s does not exist!", alirunFileName.Data())) ;
    return ; 
  }
  // looking for the file which contains SDigits
  AliPHOSGetter * gime = AliPHOSGetter::Instance() ; 
  TString fileName( gime->GetSDigitsFileName() ) ; 
    if ( eventFolderName != AliConfig::GetDefaultEventFolderName()) // only if not the default folder name 
      fileName = fileName.ReplaceAll(".root", "") + "_" + eventFolderName + ".root" ;
    if ( (gSystem->AccessPathName(fileName)) ) { 
      AliError(Form("The file %s does not exist!", fileName.Data())) ;
      return ;
    }
    // need to increase the arrays
    TString tempo = fInputFileNames[fInput-1] ; 
    delete [] fInputFileNames ; 
    fInputFileNames = new TString[fInput+1] ; 
    fInputFileNames[fInput-1] = tempo ; 
 
    tempo = fEventNames[fInput-1] ; 
    delete [] fEventNames ; 
    fEventNames = new TString[fInput+1] ; 
    fEventNames[fInput-1] = tempo ; 

    fInputFileNames[fInput] = alirunFileName ; 
    fEventNames[fInput]     = eventFolderName ;
    fInput++ ;
}

//__________________________________________________________________
void AliPHOSDigitizer::Print(const Option_t *)const 
{
  // Print Digitizer's parameters
  AliInfo(Form("\n------------------- %s -------------", GetName() )) ; 
  if( strcmp(fEventFolderName.Data(), "") != 0 ){
    printf(" Writing Digits to branch with title  %s\n", fEventFolderName.Data()) ;
    
    Int_t nStreams ; 
    if (fManager) 
      nStreams =  GetNInputStreams() ;
    else 
      nStreams = fInput ; 
    
    Int_t index = 0 ;  
    for (index = 0 ; index < nStreams ; index++) {  
      TString tempo(fEventNames[index]) ; 
      tempo += index ;
      AliPHOSGetter * gime = AliPHOSGetter::Instance(fInputFileNames[index], tempo) ; 
      TString fileName( gime->GetSDigitsFileName() ) ; 
      if ( fEventNames[index] != AliConfig::GetDefaultEventFolderName()) // only if not the default folder name 
	fileName = fileName.ReplaceAll(".root", "") + "_" + fEventNames[index]  + ".root" ;
      printf ("Adding SDigits from %s %s\n", fInputFileNames[index].Data(), fileName.Data()) ; 
    }
    AliPHOSGetter * gime = AliPHOSGetter::Instance(GetTitle(), fEventFolderName) ; 
    printf("\nWriting digits to %s", gime->GetDigitsFileName().Data()) ;
    
    printf("\nWith following parameters:\n") ;
    printf("  Electronics noise in EMC (fPinNoise)    = %f GeV\n", fPinNoise ) ; 
    printf("  Threshold  in EMC  (fEMCDigitThreshold) = %f GeV\n", fEMCDigitThreshold ) ;  
    printf("  Noise in CPV (fCPVNoise)                = %f aux units\n", fCPVNoise ) ; 
    printf("  Threshold in CPV (fCPVDigitThreshold)   = %f aux units\n",fCPVDigitThreshold ) ;  
    printf(" ---------------------------------------------------\n") ;   
  }
  else
    AliInfo(Form("AliPHOSDigitizer not initialized" )) ;
  
}

//__________________________________________________________________
 void AliPHOSDigitizer::PrintDigits(Option_t * option)
{
  // Print a table of digits
  
  AliPHOSGetter * gime = AliPHOSGetter::Instance(GetTitle(), fEventFolderName) ; 
  TClonesArray * digits = gime->Digits() ; 
  
  AliInfo(Form("%d", digits->GetEntriesFast())) ; 
  printf("\nevent %d", gAlice->GetEvNumber()) ;
  printf("\n       Number of entries in Digits list %d", digits->GetEntriesFast() )  ;  

 
  if(strstr(option,"all")||strstr(option,"EMC")){  
    //loop over digits
    AliPHOSDigit * digit;
    printf("\nEMC digits (with primaries):\n")  ;
    printf("\n   Id  Amplitude    Time          Index Nprim: Primaries list \n") ;    
    Int_t maxEmc = gime->PHOSGeometry()->GetNModules()*gime->PHOSGeometry()->GetNCristalsInModule() ;
    Int_t index ;
    for (index = 0 ; (index < digits->GetEntriesFast()) && 
	   (dynamic_cast<AliPHOSDigit *>(digits->At(index))->GetId() <= maxEmc) ; index++) {
      digit = (AliPHOSDigit * )  digits->At(index) ;
      if(digit->GetNprimary() == 0) 
	continue;
//       printf("%6d  %8d    %6.5e %4d      %2d :",
// 	      digit->GetId(), digit->GetAmp(), digit->GetTime(), digit->GetIndexInList(), digit->GetNprimary()) ;  // YVK
      printf("%6d  %.4f    %6.5e %4d      %2d :",
	      digit->GetId(), digit->GetEnergy(), digit->GetTime(), digit->GetIndexInList(), digit->GetNprimary()) ;  
      Int_t iprimary;
      for (iprimary=0; iprimary<digit->GetNprimary(); iprimary++) {
	printf("%d ",digit->GetPrimary(iprimary+1) ) ; 
      }    
      printf("\n") ;
    }
  }
  
  if(strstr(option,"all")||strstr(option,"CPV")){
    
    //loop over CPV digits
    AliPHOSDigit * digit;
    printf("\nCPV digits (with primaries):\n")  ;
    printf("\n   Id  Amplitude    Time          Index Nprim: Primaries list \n") ;    
    Int_t maxEmc = gime->PHOSGeometry()->GetNModules()*gime->PHOSGeometry()->GetNCristalsInModule() ;
    Int_t index ;
    for (index = 0 ; index < digits->GetEntriesFast(); index++) {
      digit = (AliPHOSDigit * )  digits->At(index) ;
      if(digit->GetId() > maxEmc){
	printf("%6d  %8d    %4d      %2d :",
		digit->GetId(), digit->GetAmp(), digit->GetIndexInList(), digit->GetNprimary()) ;  
	Int_t iprimary;
	for (iprimary=0; iprimary<digit->GetNprimary(); iprimary++) {
	  printf("%d ",digit->GetPrimary(iprimary+1) ) ; 
	}    
	printf("\n") ;
      }
    }
  }

}

//__________________________________________________________________
Float_t AliPHOSDigitizer::TimeOfNoise(void) const
{  // Calculates the time signal generated by noise
  //PH  Info("TimeOfNoise", "Change me") ; 
  return gRandom->Rndm() * 1.28E-5;
}

//__________________________________________________________________
void AliPHOSDigitizer::Unload() 
{  
  
  Int_t i ; 
  for(i = 1 ; i < fInput ; i++){
    TString tempo(fEventNames[i]) ; 
    tempo += i ;
    AliPHOSGetter * gime = AliPHOSGetter::Instance(fInputFileNames[i], tempo) ; 
    gime->PhosLoader()->UnloadSDigits() ; 
  }
  
  AliPHOSGetter * gime = AliPHOSGetter::Instance(GetTitle(), fEventFolderName) ; 
  gime->PhosLoader()->UnloadDigits() ; 
}

//____________________________________________________________________________
void AliPHOSDigitizer::WriteDigits()
{

  // Makes TreeD in the output file. 
  // Check if branch already exists: 
  //   if yes, exit without writing: ROOT TTree does not support overwriting/updating of 
  //      already existing branches. 
  //   else creates branch with Digits, named "PHOS", title "...",
  //      and branch "AliPHOSDigitizer", with the same title to keep all the parameters
  //      and names of files, from which digits are made.

  AliPHOSGetter * gime = AliPHOSGetter::Instance(GetTitle()) ; 
  const TClonesArray * digits = gime->Digits() ; 
  TTree * treeD = gime->TreeD();

  // -- create Digits branch
  Int_t bufferSize = 32000 ;    
  TBranch * digitsBranch = treeD->Branch("PHOS","TClonesArray",&digits,bufferSize);
  digitsBranch->SetTitle(fEventFolderName);
  digitsBranch->Fill() ;
  
  gime->WriteDigits("OVERWRITE");
  gime->WriteDigitizer("OVERWRITE");

  Unload() ; 

}