[u/mrichter/AliRoot.git] / PHOS / AliPHOSPreprocessor.cxx

/**************************************************************************
 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
 *                                                                        *
 * Author: The ALICE Off-line Project.                                    *
 * Contributors are mentioned in the code where appropriate.              *
 *                                                                        *
 * Permission to use, copy, modify and distribute this software and its   *
 * documentation strictly for non-commercial purposes is hereby granted   *
 * without fee, provided that the above copyright notice appears in all   *
 * copies and that both the copyright notice and this permission notice   *
 * appear in the supporting documentation. The authors make no claims     *
 * about the suitability of this software for any purpose. It is          *
 * provided "as is" without express or implied warranty.                  *
 **************************************************************************/

/* $Id$ */

///////////////////////////////////////////////////////////////////////////////
// PHOS Preprocessor class. It runs by Shuttle at the end of the run,
// calculates calibration coefficients and dead/bad channels
// to be posted in OCDB
//
// Author: Boris Polichtchouk, 4 October 2006
///////////////////////////////////////////////////////////////////////////////

#include "AliPHOSPreprocessor.h"
#include "AliLog.h"
#include "AliCDBMetaData.h"
#include "AliCDBEntry.h"
#include "AliPHOSEmcCalibData.h"
#include "TFile.h"
#include "TH1.h"
#include "TF1.h"
#include "TH2.h"
#include "TMap.h"
#include "TRandom.h"
#include "TKey.h"
#include "TList.h"
#include "TObjString.h"
#include "TObjArray.h"
#include "TObject.h"
#include "TString.h"
#include "TMath.h"
#include "TAxis.h"
#include "AliPHOSEmcBadChannelsMap.h"

ClassImp(AliPHOSPreprocessor)

  Double_t rgaus(Double_t *x, Double_t *par)
{
  Double_t gaus = par[0] * TMath::Exp( -(x[0]-par[1])*(x[0]-par[1]) /
                                       (2*par[2]*par[2]) );
  return gaus;
}

//_______________________________________________________________________________________
AliPHOSPreprocessor::AliPHOSPreprocessor() :
AliPreprocessor("PHS",0)
{
  //default constructor
}

//_______________________________________________________________________________________
AliPHOSPreprocessor::AliPHOSPreprocessor(AliShuttleInterface* shuttle):
AliPreprocessor("PHS",shuttle)
{
  // Constructor

  AddRunType("PHYSICS");
  AddRunType("STANDALONE");
}

//_______________________________________________________________________________________
UInt_t AliPHOSPreprocessor::Process(TMap* /*valueSet*/)
{
  // process data retrieved by the Shuttle
  
  TString runType = GetRunType();
  Log(Form("Run type: %s",runType.Data()));

  if(runType=="STANDALONE") {
    Bool_t ledOK = ProcessLEDRun();
    if(ledOK) return 0;
    else
      return 1;
  }
  
  if(runType=="PHYSICS") {
    
    Bool_t badmap_OK = FindBadChannelsEmc();
    if(!badmap_OK) Log(Form("WARNING!! FindBadChannels() completed with BAD status!"));
    
    Bool_t calibEmc_OK = CalibrateEmc();
    
    if(calibEmc_OK && badmap_OK) return 0;
    else
      return 1;
  }

  Log(Form("Unknown run type %s. Do nothing and return OK.",runType.Data()));
  return 0;

}


Bool_t AliPHOSPreprocessor::ProcessLEDRun()
{
  //Process LED run, update High Gain/Low Gain ratios.

  AliPHOSEmcCalibData calibData;

  TList* list = GetFileSources(kDAQ, "LED");
  if(!list) {
    Log("Sources list for LED run not found, exit.");
    return kFALSE;
  }

  if(!list->GetEntries()) {
    Log("Sources list for LED run is empty, exit.");
    return kFALSE;
  }

  //Retrieve the last EMC calibration object
  const AliPHOSEmcCalibData* clb=0;
  AliCDBEntry* entryCalib = GetFromOCDB("Calib", "EmcGainPedestals");

  if(!entryCalib)
    Log(Form("Cannot find any AliCDBEntry for [Calib, EmcGainPedestals]!"));
  else
    clb = (AliPHOSEmcCalibData*)entryCalib->GetObject();
  
  TIter iter(list);
  TObjString *source;
  
  while ((source = dynamic_cast<TObjString *> (iter.Next()))) {
    
    AliInfo(Form("found source %s", source->String().Data()));

    TString fileName = GetFile(kDAQ, "LED", source->GetName());
    AliInfo(Form("Got filename: %s",fileName.Data()));

    TFile f(fileName);

    if(!f.IsOpen()) {
      Log(Form("File %s is not opened, something goes wrong!",fileName.Data()));
      return kFALSE;
    }

    const Int_t nMod=5; // 1:5 modules
    const Int_t nCol=56; //1:56 columns in each module
    const Int_t nRow=64; //1:64 rows in each module
    
    for(Int_t mod=0; mod<nMod; mod++) {
      for(Int_t col=0; col<nCol; col++) {
	for(Int_t row=0; row<nRow; row++) {

	  //High Gain to Low Gain ratio 
          Float_t ratio = HG2LG(mod,row,col,&f);
          calibData.SetHighLowRatioEmc(mod+1,col+1,row+1,ratio);
	  if(ratio != 16.)
	    AliInfo(Form("mod %d iX %d iZ %d  ratio %.3f\n",mod,row,col,ratio));
	  
	  if(clb) {
	    Double_t coeff = clb->GetADCchannelEmc(mod+1,col+1,row+1);
	    calibData.SetADCchannelEmc(mod+1,col+1,row+1,coeff);
	  }
	  else
	    calibData.SetADCchannelEmc(mod+1,col+1,row+1,1.);

	}
      }
    }

  } // end of loop over files

  //Store bad channels map
  AliCDBMetaData emcMetaData;

  //Data valid from current run fRun until updated (validityInfinite=kTRUE)
  Bool_t result = Store("Calib","EmcGainPedestals",&calibData,&emcMetaData,fRun,kTRUE);
  return result;

}

Float_t AliPHOSPreprocessor::HG2LG(Int_t mod, Int_t X, Int_t Z, TFile* f)
{
  //Calculates High gain to Low gain ratio 
  //for crystal at the position (X,Z) in the PHOS module mod.
  
  char hname[128];
  sprintf(hname,"%d_%d_%d",mod,X,Z);

  TH1F* h1 = (TH1F*)f->Get(hname);
  if(!h1) return 16.;

  if(!h1->GetEntries()) return 16.;
  if(h1->GetMaximum()<10.) return 16.;

  Double_t max = h1->GetBinCenter(h1->GetMaximumBin()); // peak
  Double_t xmin = max - (h1->GetRMS()/3);
  Double_t xmax = max + (h1->GetRMS()/2);
  //       Double_t xmin = max - (h1->GetRMS());
  //       Double_t xmax = max + (h1->GetRMS());

  TF1* gaus1 = new TF1("gaus1",rgaus,xmin,xmax,3);
  gaus1->SetParNames("Constant","Mean","Sigma");
  gaus1->SetParameter("Constant",h1->GetMaximum());
  gaus1->SetParameter("Mean",max);
  gaus1->SetParameter("Sigma",1.);
  gaus1->SetLineColor(kBlue);
  h1->Fit(gaus1,"LERQ+");

  AliInfo(Form("%s: %d entries, mean=%.3f, peak=%.3f, rms= %.3f. HG/LG = %.3f\n",
	   h1->GetTitle(),h1->GetEntries(),h1->GetMean(),max,h1->GetRMS(),
	   gaus1->GetParameter("Mean"))); 

  return gaus1->GetParameter("Mean");

}

Bool_t AliPHOSPreprocessor::FindBadChannelsEmc()
{
  //Loop over two systems: DAQ and HLT.
  //For each system the same algorithm implemented in DoFindBadChannelsEmc() invokes.

  TList* list=0;
  TString path;
  
  Int_t system[2] = { kDAQ, kHLT };
  const char* sysn[] = { "DAQ","HLT" };
  Bool_t result[2] = { kTRUE, kTRUE };

  for (Int_t i=0; i<2; i++) {

    AliPHOSEmcBadChannelsMap badMap;
    list = GetFileSources(system[i], "BAD_CHANNELS");

    if(!list) {
      Log(Form("%s sources list for BAD_CHANNELS not found!",sysn[i]));
      result[i] = kFALSE;
      continue;
    }

    if(!list->GetEntries()) {
      Log(Form("Got empty sources list. It seems %s DA2 did not produce any files!",sysn[i]));
      result[i] = kFALSE;
      continue;
    }

    result[i] *= DoFindBadChannelsEmc(system[i],list,badMap);

    // Store the bad channels map.
  
    AliCDBMetaData md;
    md.SetResponsible("Boris Polishchuk");

    if(system[i] == kDAQ) 
      path = "Calib";
    else 
      path = "HLT";
  
    // Data valid from current run fRun until being updated (validityInfinite=kTRUE)
    result[i] *= Store(path.Data(), "EmcBadChannels", &badMap, &md, fRun, kTRUE);
    
  }
  
  if(result[0] || result[1]) return kTRUE;
  else return kFALSE;
}

Bool_t AliPHOSPreprocessor::DoFindBadChannelsEmc(Int_t system, TList* list, AliPHOSEmcBadChannelsMap& badMap)
{
  //Creates the bad channels map for PHOS EMC.

  // The file fileName contains histograms which have been produced by DA2 detector algorithm.
  // It is a responsibility of the SHUTTLE framework to form the fileName.

  TIter iter(list);
  TObjString *source;
  char hnam[80];
  TH1F* h1=0;

  const Float_t fQualityCut = 1.;
  Int_t nGoods[5] = {0,0,0,0,0};
  
  while ((source = dynamic_cast<TObjString *> (iter.Next()))) {

    AliInfo(Form("found source %s", source->String().Data()));

    TString fileName = GetFile(system, "BAD_CHANNELS", source->GetName());
    AliInfo(Form("Got filename: %s",fileName.Data()));

    TFile f(fileName);

    if(!f.IsOpen()) {
      Log(Form("File %s is not opened, something goes wrong!",fileName.Data()));
      return kFALSE;
    }
    
    Log(Form("Begin check for bad channels."));
    
    for(Int_t mod=0; mod<5; mod++) {
      for(Int_t iX=0; iX<64; iX++) {
	for(Int_t iZ=0; iZ<56; iZ++) {

	  sprintf(hnam,"%d_%d_%d_%d",mod,iX,iZ,1); // high gain	
	  h1 = (TH1F*)f.Get(hnam);

	  if(h1) {
	    Double_t mean = h1->GetMean();
	    
	    if(mean)
	      Log(Form("iX=%d iZ=%d gain=%d   mean=%.3f\n",iX,iZ,1,mean));

	    if( mean>0 && mean<fQualityCut ) { 
	      nGoods[mod]++; 
	    }
	    else
	      badMap.SetBadChannel(mod+1,iZ+1,iX+1); //module, col,row
	  }

	}
      }

      if(nGoods[mod])
	Log(Form("Module %d: %d good channels.",mod,nGoods[mod]));
    }

    
  } // end of loop over sources
  
  return kTRUE;
}

Bool_t AliPHOSPreprocessor::CalibrateEmc()
{
  //Loop over two systems: DAQ and HLT.
  //For each system the same algorithm implemented in DoCalibrateEmc() invokes.

  const AliPHOSEmcBadChannelsMap* badMap=0;
  AliCDBEntry* entryBCM=0;
  TList* list=0;
  TString path;
  
  Int_t system[2] = { kDAQ, kHLT };
  const char* sysn[] = { "DAQ","HLT" };
  Bool_t result[2] = { kTRUE, kTRUE };

  for (Int_t i=0; i<2; i++) {

    AliPHOSEmcCalibData calibData;
    list = GetFileSources(system[i], "AMPLITUDES");
  
    if(!list) {
      Log(Form("%s sources list not found!",sysn[i]));
      result[i] = kFALSE;
      continue;
    }

    if(!list->GetEntries()) {
      Log(Form("Got empty sources list. It seems %s DA1 did not produce any files!",sysn[i]));
      result[i] = kFALSE;
      continue;
    }

    // Retrieve the Bad Channels Map (BCM)

    if(system[i] == kDAQ) 
      path = "Calib";
    else 
      path = "HLT";
  
    entryBCM = GetFromOCDB(path.Data(), "EmcBadChannels");

    if(!entryBCM)
      Log(Form("WARNING!! Cannot find any AliCDBEntry for [%s, EmcBadChannels]!",path.Data()));
    else
      badMap = (AliPHOSEmcBadChannelsMap*)entryBCM->GetObject();

    if(!badMap)
      Log(Form("WARNING!! Nothing for %s in AliCDBEntry. All cells considered GOOD!",sysn[i]));

    result[i] *= DoCalibrateEmc(system[i],list,badMap,calibData);

    //Store EMC calibration data

    AliCDBMetaData emcMetaData;
    result[i] *= Store(path.Data(), "EmcGainPedestals", &calibData, &emcMetaData, 0, kTRUE);
  
  }
  
  if(result[0] || result[1]) return kTRUE;
  else return kFALSE;
}


Bool_t AliPHOSPreprocessor::DoCalibrateEmc(Int_t system, TList* list, const AliPHOSEmcBadChannelsMap* badMap, AliPHOSEmcCalibData& calibData)
{
  // Return kTRUE if OK.
  // I.  Calculates the set of calibration coefficients to equalyze the mean energies deposited at high gain.
  // II. Extracts High_Gain/Low_Gain ratio for each channel.

  // The file fileName contains histograms which have been produced by DA1 detector algorithm.
  // It is a responsibility of the SHUTTLE framework to form the fileName.

  gRandom->SetSeed(0); //the seed is set to the current  machine clock!

  TIter iter(list);
  TObjString *source;
  
  while ((source = dynamic_cast<TObjString *> (iter.Next()))) {
    AliInfo(Form("found source %s", source->String().Data()));

    TString fileName = GetFile(system, "AMPLITUDES", source->GetName());
    AliInfo(Form("Got filename: %s",fileName.Data()));

    TFile f(fileName);

    if(!f.IsOpen()) {
      Log(Form("File %s is not opened, something goes wrong!",fileName.Data()));
      return kFALSE;
    }
    
    const Int_t nMod=5; // 1:5 modules
    const Int_t nCol=56; //1:56 columns in each module
    const Int_t nRow=64; //1:64 rows in each module

    Double_t coeff;
    char hnam[80];
    TH2F* h2=0;
    TH1D* h1=0;
    
    //Get the reference histogram
    //(author: Gustavo Conesa Balbastre)

    TList * keylist = f.GetListOfKeys();
    Int_t nkeys   = f.GetNkeys();
    Bool_t ok = kFALSE;
    TKey  *key;
    Int_t ikey = 0;
    Int_t counter = 0;
    TH1D* hRef = 0;

    //Check if the file contains any histogram
    
    if(nkeys< 2){
      Log(Form("Not enough histograms (%d) for calibration.",nkeys));
      return 0;
    }
    
    while(!ok){
      ikey = gRandom->Integer(nkeys);
      key = (TKey*)keylist->At(ikey);
      TObject* obj = f.Get(key->GetName());
      TString cname(obj->ClassName());
      if(cname == "TH2F") {
	h2 = (TH2F*)obj;
	TString htitl = h2->GetTitle();
	if(htitl.Contains("and gain 1")) {
	  hRef = h2->ProjectionX();
	  hRef->GetXaxis()->SetRange(10,1000); // to cut off saturation peak and noise
	  // Check if the reference histogram has too little statistics
	  if(hRef->GetMean() && hRef->GetEntries()>2) ok=kTRUE;

	  const TString delim = "_";
	  TString str = hRef->GetName();
	  TObjArray* tks = str.Tokenize(delim);
	  const Int_t md = ((TObjString*)tks->At(0))->GetString().Atoi();
	  const Int_t X   = ((TObjString*)tks->At(1))->GetString().Atoi();
	  const Int_t Z   = ((TObjString*)tks->At(2))->GetString().Atoi();

	  if(badMap) {
	    if(badMap->IsBadChannel(md+1,Z+1,X+1)) {
	      AliInfo(Form("Cell mod=%d col=%d row=%d is bad. Histogram %s rejected.",
			   md+1,Z+1,X+1,hRef->GetName()));
	      ok=kFALSE;
	    }
	  }

	}
      }
      
      counter++;
      
      if(!ok && counter > nkeys){
	Log("No histogram with enough statistics for reference. Exit.");
	return 0;
      }
    }
    
    Log(Form("reference histogram %s, %.1f entries, mean=%.3f, rms=%.3f.",
	     hRef->GetName(),hRef->GetEntries(),
	     hRef->GetMean(),hRef->GetRMS()));

    Double_t refMean=hRef->GetMean();
    
    // Calculates relative calibration coefficients for all non-zero channels
    
    for(Int_t mod=0; mod<nMod; mod++) {
      for(Int_t col=0; col<nCol; col++) {
	for(Int_t row=0; row<nRow; row++) {

	  //High Gain to Low Gain ratio
	  Float_t ratio = HG2LG(mod,row,col,&f);
	  calibData.SetHighLowRatioEmc(mod+1,col+1,row+1,ratio);
	  
	  sprintf(hnam,"%d_%d_%d_1",mod,row,col); // high gain!
	  h2 = (TH2F*)f.Get(hnam);

	  //TODO: dead channels exclusion!
	  if(h2) {
	    h1 = h2->ProjectionX();
	    h1->GetXaxis()->SetRange(10,1000); //to cut off saturation peak and noise
	    coeff = h1->GetMean()/refMean;
	    if(coeff>0)
	      calibData.SetADCchannelEmc(mod+1,col+1,row+1,1./coeff);
	    else 
	      calibData.SetADCchannelEmc(mod+1,col+1,row+1,1.);
	    AliInfo(Form("mod %d col %d row %d  coeff %f\n",mod,col,row,coeff));
	  }
	  else
	    calibData.SetADCchannelEmc(mod+1,col+1,row+1,1.); 
	}
      }
    }
    
    f.Close();
  }
  
  return 1;
}
Commit	Line	Data
1ab07e55	1	/**************************************************************************
	2	* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
	3	* *
	4	* Author: The ALICE Off-line Project. *
	5	* Contributors are mentioned in the code where appropriate. *
	6	* *
	7	* Permission to use, copy, modify and distribute this software and its *
	8	* documentation strictly for non-commercial purposes is hereby granted *
	9	* without fee, provided that the above copyright notice appears in all *
	10	* copies and that both the copyright notice and this permission notice *
	11	* appear in the supporting documentation. The authors make no claims *
	12	* about the suitability of this software for any purpose. It is *
	13	* provided "as is" without express or implied warranty. *
	14	**************************************************************************/
	15
	16	/* $Id$ */
	17
	18	///////////////////////////////////////////////////////////////////////////////
	19	// PHOS Preprocessor class. It runs by Shuttle at the end of the run,
	20	// calculates calibration coefficients and dead/bad channels
	21	// to be posted in OCDB
	22	//
	23	// Author: Boris Polichtchouk, 4 October 2006
	24	///////////////////////////////////////////////////////////////////////////////
	25
	26	#include "AliPHOSPreprocessor.h"
	27	#include "AliLog.h"
	28	#include "AliCDBMetaData.h"
30a0d5a2	29	#include "AliCDBEntry.h"
1ab07e55	30	#include "AliPHOSEmcCalibData.h"
	31	#include "TFile.h"
	32	#include "TH1.h"
450717bc	33	#include "TF1.h"
450717bc	34	#include "TH2.h"
1ab07e55	35	#include "TMap.h"
1ab07e55	36	#include "TRandom.h"
f97eb136	37	#include "TKey.h"
516e7ab3	38	#include "TList.h"
516e7ab3	39	#include "TObjString.h"
30a0d5a2	40	#include "TObjArray.h"
450717bc	41	#include "TObject.h"
	42	#include "TString.h"
	43	#include "TMath.h"
306e5917	44	#include "TAxis.h"
3c0265c1	45	#include "AliPHOSEmcBadChannelsMap.h"
1ab07e55	46
	47	ClassImp(AliPHOSPreprocessor)
	48
450717bc	49	Double_t rgaus(Double_t x, Double_t par)
	50	{
	51	Double_t gaus = par[0] * TMath::Exp( -(x[0]-par[1])*(x[0]-par[1]) /
	52	(2par[2]par[2]) );
	53	return gaus;
	54	}
	55
1ab07e55	56	//_______________________________________________________________________________________
1ab07e55	57	AliPHOSPreprocessor::AliPHOSPreprocessor() :
81587b1e	58	AliPreprocessor("PHS",0)
1ab07e55	59	{
	60	//default constructor
	61	}
	62
	63	//_______________________________________________________________________________________
81587b1e	64	AliPHOSPreprocessor::AliPHOSPreprocessor(AliShuttleInterface* shuttle):
81587b1e	65	AliPreprocessor("PHS",shuttle)
1ab07e55	66	{
1ab07e55	67	// Constructor
ce2c6758	68
	69	AddRunType("PHYSICS");
	70	AddRunType("STANDALONE");
1ab07e55	71	}
	72
	73	//_______________________________________________________________________________________
	74	UInt_t AliPHOSPreprocessor::Process(TMap* /valueSet/)
	75	{
	76	// process data retrieved by the Shuttle
516e7ab3	77
3c0265c1	78	TString runType = GetRunType();
	79	Log(Form("Run type: %s",runType.Data()));
	80
9f43d7da	81	if(runType=="STANDALONE") {
eba66a50	82	Bool_t ledOK = ProcessLEDRun();
	83	if(ledOK) return 0;
	84	else
	85	return 1;
	86	}
9f43d7da	87
	88	if(runType=="PHYSICS") {
	89
	90	Bool_t badmap_OK = FindBadChannelsEmc();
	91	if(!badmap_OK) Log(Form("WARNING!! FindBadChannels() completed with BAD status!"));
	92
	93	Bool_t calibEmc_OK = CalibrateEmc();
5db29457	94
9f43d7da	95	if(calibEmc_OK && badmap_OK) return 0;
	96	else
	97	return 1;
	98	}
	99
	100	Log(Form("Unknown run type %s. Do nothing and return OK.",runType.Data()));
	101	return 0;
	102
	103	}
	104
	105
	106	Bool_t AliPHOSPreprocessor::ProcessLEDRun()
	107	{
12661472	108	//Process LED run, update High Gain/Low Gain ratios.
9f43d7da	109
12661472	110	AliPHOSEmcCalibData calibData;
9f43d7da	111
	112	TList* list = GetFileSources(kDAQ, "LED");
	113	if(!list) {
	114	Log("Sources list for LED run not found, exit.");
	115	return kFALSE;
	116	}
	117
12661472	118	if(!list->GetEntries()) {
	119	Log("Sources list for LED run is empty, exit.");
	120	return kFALSE;
	121	}
	122
	123	//Retrieve the last EMC calibration object
	124	const AliPHOSEmcCalibData* clb=0;
	125	AliCDBEntry* entryCalib = GetFromOCDB("Calib", "EmcGainPedestals");
	126
	127	if(!entryCalib)
	128	Log(Form("Cannot find any AliCDBEntry for [Calib, EmcGainPedestals]!"));
	129	else
	130	clb = (AliPHOSEmcCalibData*)entryCalib->GetObject();
	131
9f43d7da	132	TIter iter(list);
9f43d7da	133	TObjString *source;
9f43d7da	134
9f43d7da	135	while ((source = dynamic_cast<TObjString *> (iter.Next()))) {
12661472	136
9f43d7da	137	AliInfo(Form("found source %s", source->String().Data()));
	138
	139	TString fileName = GetFile(kDAQ, "LED", source->GetName());
	140	AliInfo(Form("Got filename: %s",fileName.Data()));
	141
	142	TFile f(fileName);
	143
	144	if(!f.IsOpen()) {
	145	Log(Form("File %s is not opened, something goes wrong!",fileName.Data()));
	146	return kFALSE;
	147	}
	148
	149	const Int_t nMod=5; // 1:5 modules
	150	const Int_t nCol=56; //1:56 columns in each module
	151	const Int_t nRow=64; //1:64 rows in each module
12661472	152
9f43d7da	153	for(Int_t mod=0; mod<nMod; mod++) {
	154	for(Int_t col=0; col<nCol; col++) {
	155	for(Int_t row=0; row<nRow; row++) {
12661472	156
	157	//High Gain to Low Gain ratio
	158	Float_t ratio = HG2LG(mod,row,col,&f);
	159	calibData.SetHighLowRatioEmc(mod+1,col+1,row+1,ratio);
	160	if(ratio != 16.)
	161	AliInfo(Form("mod %d iX %d iZ %d ratio %.3f\n",mod,row,col,ratio));
	162
	163	if(clb) {
	164	Double_t coeff = clb->GetADCchannelEmc(mod+1,col+1,row+1);
	165	calibData.SetADCchannelEmc(mod+1,col+1,row+1,coeff);
	166	}
	167	else
	168	calibData.SetADCchannelEmc(mod+1,col+1,row+1,1.);
	169
9f43d7da	170	}
	171	}
	172	}
	173
12661472	174	} // end of loop over files
9f43d7da	175
9f43d7da	176	//Store bad channels map
12661472	177	AliCDBMetaData emcMetaData;
9f43d7da	178
12661472	179	//Data valid from current run fRun until updated (validityInfinite=kTRUE)
12661472	180	Bool_t result = Store("Calib","EmcGainPedestals",&calibData,&emcMetaData,fRun,kTRUE);
9f43d7da	181	return result;
	182
	183	}
	184
	185	Float_t AliPHOSPreprocessor::HG2LG(Int_t mod, Int_t X, Int_t Z, TFile* f)
	186	{
	187	//Calculates High gain to Low gain ratio
	188	//for crystal at the position (X,Z) in the PHOS module mod.
	189
	190	char hname[128];
	191	sprintf(hname,"%d_%d_%d",mod,X,Z);
	192
	193	TH1F* h1 = (TH1F*)f->Get(hname);
	194	if(!h1) return 16.;
	195
	196	if(!h1->GetEntries()) return 16.;
	197	if(h1->GetMaximum()<10.) return 16.;
	198
	199	Double_t max = h1->GetBinCenter(h1->GetMaximumBin()); // peak
	200	Double_t xmin = max - (h1->GetRMS()/3);
	201	Double_t xmax = max + (h1->GetRMS()/2);
	202	// Double_t xmin = max - (h1->GetRMS());
	203	// Double_t xmax = max + (h1->GetRMS());
	204
	205	TF1* gaus1 = new TF1("gaus1",rgaus,xmin,xmax,3);
	206	gaus1->SetParNames("Constant","Mean","Sigma");
	207	gaus1->SetParameter("Constant",h1->GetMaximum());
	208	gaus1->SetParameter("Mean",max);
	209	gaus1->SetParameter("Sigma",1.);
	210	gaus1->SetLineColor(kBlue);
	211	h1->Fit(gaus1,"LERQ+");
	212
3f5f9893	213	AliInfo(Form("%s: %d entries, mean=%.3f, peak=%.3f, rms= %.3f. HG/LG = %.3f\n",
9f43d7da	214	h1->GetTitle(),h1->GetEntries(),h1->GetMean(),max,h1->GetRMS(),
	215	gaus1->GetParameter("Mean")));
	216
	217	return gaus1->GetParameter("Mean");
	218
	219	}
	220
	221	Bool_t AliPHOSPreprocessor::FindBadChannelsEmc()
	222	{
5db29457	223	//Loop over two systems: DAQ and HLT.
5db29457	224	//For each system the same algorithm implemented in DoFindBadChannelsEmc() invokes.
9f43d7da	225
5db29457	226	TList* list=0;
	227	TString path;
	228
	229	Int_t system[2] = { kDAQ, kHLT };
	230	const char* sysn[] = { "DAQ","HLT" };
	231	Bool_t result[2] = { kTRUE, kTRUE };
9f43d7da	232
5db29457	233	for (Int_t i=0; i<2; i++) {
9f43d7da	234
5db29457	235	AliPHOSEmcBadChannelsMap badMap;
5db29457	236	list = GetFileSources(system[i], "BAD_CHANNELS");
9f43d7da	237
5db29457	238	if(!list) {
	239	Log(Form("%s sources list for BAD_CHANNELS not found!",sysn[i]));
	240	result[i] = kFALSE;
	241	continue;
	242	}
9f43d7da	243
5db29457	244	if(!list->GetEntries()) {
	245	Log(Form("Got empty sources list. It seems %s DA2 did not produce any files!",sysn[i]));
	246	result[i] = kFALSE;
	247	continue;
	248	}
	249
	250	result[i] *= DoFindBadChannelsEmc(system[i],list,badMap);
	251
	252	// Store the bad channels map.
	253
	254	AliCDBMetaData md;
	255	md.SetResponsible("Boris Polishchuk");
	256
	257	if(system[i] == kDAQ)
	258	path = "Calib";
	259	else
	260	path = "HLT";
	261
	262	// Data valid from current run fRun until being updated (validityInfinite=kTRUE)
	263	result[i] *= Store(path.Data(), "EmcBadChannels", &badMap, &md, fRun, kTRUE);
	264
9f43d7da	265	}
5db29457	266
	267	if(result[0] \|\| result[1]) return kTRUE;
	268	else return kFALSE;
	269	}
	270
	271	Bool_t AliPHOSPreprocessor::DoFindBadChannelsEmc(Int_t system, TList* list, AliPHOSEmcBadChannelsMap& badMap)
	272	{
	273	//Creates the bad channels map for PHOS EMC.
	274
	275	// The file fileName contains histograms which have been produced by DA2 detector algorithm.
	276	// It is a responsibility of the SHUTTLE framework to form the fileName.
9f43d7da	277
	278	TIter iter(list);
	279	TObjString *source;
	280	char hnam[80];
	281	TH1F* h1=0;
	282
	283	const Float_t fQualityCut = 1.;
	284	Int_t nGoods[5] = {0,0,0,0,0};
	285
	286	while ((source = dynamic_cast<TObjString *> (iter.Next()))) {
	287
	288	AliInfo(Form("found source %s", source->String().Data()));
	289
5db29457	290	TString fileName = GetFile(system, "BAD_CHANNELS", source->GetName());
9f43d7da	291	AliInfo(Form("Got filename: %s",fileName.Data()));
	292
	293	TFile f(fileName);
	294
	295	if(!f.IsOpen()) {
	296	Log(Form("File %s is not opened, something goes wrong!",fileName.Data()));
	297	return kFALSE;
	298	}
	299
	300	Log(Form("Begin check for bad channels."));
	301
	302	for(Int_t mod=0; mod<5; mod++) {
	303	for(Int_t iX=0; iX<64; iX++) {
	304	for(Int_t iZ=0; iZ<56; iZ++) {
	305
	306	sprintf(hnam,"%d_%d_%d_%d",mod,iX,iZ,1); // high gain
	307	h1 = (TH1F*)f.Get(hnam);
	308
	309	if(h1) {
	310	Double_t mean = h1->GetMean();
	311
	312	if(mean)
	313	Log(Form("iX=%d iZ=%d gain=%d mean=%.3f\n",iX,iZ,1,mean));
	314
	315	if( mean>0 && mean<fQualityCut ) {
	316	nGoods[mod]++;
	317	}
	318	else
	319	badMap.SetBadChannel(mod+1,iZ+1,iX+1); //module, col,row
	320	}
	321
	322	}
	323	}
	324
	325	if(nGoods[mod])
	326	Log(Form("Module %d: %d good channels.",mod,nGoods[mod]));
	327	}
	328
	329
	330	} // end of loop over sources
	331
5db29457	332	return kTRUE;
9f43d7da	333	}
	334
	335	Bool_t AliPHOSPreprocessor::CalibrateEmc()
	336	{
5db29457	337	//Loop over two systems: DAQ and HLT.
5db29457	338	//For each system the same algorithm implemented in DoCalibrateEmc() invokes.
9f43d7da	339
5db29457	340	const AliPHOSEmcBadChannelsMap* badMap=0;
	341	AliCDBEntry* entryBCM=0;
	342	TList* list=0;
	343	TString path;
	344
	345	Int_t system[2] = { kDAQ, kHLT };
	346	const char* sysn[] = { "DAQ","HLT" };
	347	Bool_t result[2] = { kTRUE, kTRUE };
eba66a50	348
5db29457	349	for (Int_t i=0; i<2; i++) {
	350
	351	AliPHOSEmcCalibData calibData;
	352	list = GetFileSources(system[i], "AMPLITUDES");
9f43d7da	353
5db29457	354	if(!list) {
	355	Log(Form("%s sources list not found!",sysn[i]));
	356	result[i] = kFALSE;
	357	continue;
	358	}
	359
	360	if(!list->GetEntries()) {
	361	Log(Form("Got empty sources list. It seems %s DA1 did not produce any files!",sysn[i]));
	362	result[i] = kFALSE;
	363	continue;
	364	}
	365
	366	// Retrieve the Bad Channels Map (BCM)
	367
	368	if(system[i] == kDAQ)
	369	path = "Calib";
	370	else
	371	path = "HLT";
9f43d7da	372
5db29457	373	entryBCM = GetFromOCDB(path.Data(), "EmcBadChannels");
1ab07e55	374
5db29457	375	if(!entryBCM)
	376	Log(Form("WARNING!! Cannot find any AliCDBEntry for [%s, EmcBadChannels]!",path.Data()));
	377	else
	378	badMap = (AliPHOSEmcBadChannelsMap*)entryBCM->GetObject();
	379
	380	if(!badMap)
	381	Log(Form("WARNING!! Nothing for %s in AliCDBEntry. All cells considered GOOD!",sysn[i]));
	382
	383	result[i] *= DoCalibrateEmc(system[i],list,badMap,calibData);
	384
	385	//Store EMC calibration data
	386
	387	AliCDBMetaData emcMetaData;
	388	result[i] *= Store(path.Data(), "EmcGainPedestals", &calibData, &emcMetaData, 0, kTRUE);
	389
9f43d7da	390	}
5db29457	391
	392	if(result[0] \|\| result[1]) return kTRUE;
	393	else return kFALSE;
	394	}
9f43d7da	395
30a0d5a2	396
5db29457	397	Bool_t AliPHOSPreprocessor::DoCalibrateEmc(Int_t system, TList* list, const AliPHOSEmcBadChannelsMap* badMap, AliPHOSEmcCalibData& calibData)
	398	{
	399	// Return kTRUE if OK.
	400	// I. Calculates the set of calibration coefficients to equalyze the mean energies deposited at high gain.
	401	// II. Extracts High_Gain/Low_Gain ratio for each channel.
30a0d5a2	402
5db29457	403	// The file fileName contains histograms which have been produced by DA1 detector algorithm.
5db29457	404	// It is a responsibility of the SHUTTLE framework to form the fileName.
30a0d5a2	405
5db29457	406	gRandom->SetSeed(0); //the seed is set to the current machine clock!
30a0d5a2	407
516e7ab3	408	TIter iter(list);
516e7ab3	409	TObjString *source;
3c0265c1	410
516e7ab3	411	while ((source = dynamic_cast<TObjString *> (iter.Next()))) {
516e7ab3	412	AliInfo(Form("found source %s", source->String().Data()));
f97eb136	413
5db29457	414	TString fileName = GetFile(system, "AMPLITUDES", source->GetName());
516e7ab3	415	AliInfo(Form("Got filename: %s",fileName.Data()));
f97eb136	416
516e7ab3	417	TFile f(fileName);
f97eb136	418
516e7ab3	419	if(!f.IsOpen()) {
516e7ab3	420	Log(Form("File %s is not opened, something goes wrong!",fileName.Data()));
5db29457	421	return kFALSE;
516e7ab3	422	}
9f43d7da	423
516e7ab3	424	const Int_t nMod=5; // 1:5 modules
	425	const Int_t nCol=56; //1:56 columns in each module
	426	const Int_t nRow=64; //1:64 rows in each module
	427
	428	Double_t coeff;
	429	char hnam[80];
450717bc	430	TH2F* h2=0;
450717bc	431	TH1D* h1=0;
3c0265c1	432
516e7ab3	433	//Get the reference histogram
	434	//(author: Gustavo Conesa Balbastre)
	435
	436	TList * keylist = f.GetListOfKeys();
	437	Int_t nkeys = f.GetNkeys();
	438	Bool_t ok = kFALSE;
	439	TKey *key;
516e7ab3	440	Int_t ikey = 0;
516e7ab3	441	Int_t counter = 0;
450717bc	442	TH1D* hRef = 0;
450717bc	443
516e7ab3	444	//Check if the file contains any histogram
	445
	446	if(nkeys< 2){
	447	Log(Form("Not enough histograms (%d) for calibration.",nkeys));
5db29457	448	return 0;
f97eb136	449	}
450717bc	450
516e7ab3	451	while(!ok){
	452	ikey = gRandom->Integer(nkeys);
	453	key = (TKey*)keylist->At(ikey);
450717bc	454	TObject* obj = f.Get(key->GetName());
	455	TString cname(obj->ClassName());
	456	if(cname == "TH2F") {
	457	h2 = (TH2F*)obj;
	458	TString htitl = h2->GetTitle();
	459	if(htitl.Contains("and gain 1")) {
	460	hRef = h2->ProjectionX();
306e5917	461	hRef->GetXaxis()->SetRange(10,1000); // to cut off saturation peak and noise
450717bc	462	// Check if the reference histogram has too little statistics
306e5917	463	if(hRef->GetMean() && hRef->GetEntries()>2) ok=kTRUE;
30a0d5a2	464
	465	const TString delim = "_";
	466	TString str = hRef->GetName();
	467	TObjArray* tks = str.Tokenize(delim);
	468	const Int_t md = ((TObjString*)tks->At(0))->GetString().Atoi();
	469	const Int_t X = ((TObjString*)tks->At(1))->GetString().Atoi();
	470	const Int_t Z = ((TObjString*)tks->At(2))->GetString().Atoi();
	471
	472	if(badMap) {
	473	if(badMap->IsBadChannel(md+1,Z+1,X+1)) {
	474	AliInfo(Form("Cell mod=%d col=%d row=%d is bad. Histogram %s rejected.",
	475	md+1,Z+1,X+1,hRef->GetName()));
	476	ok=kFALSE;
	477	}
	478	}
	479
450717bc	480	}
516e7ab3	481	}
b8093789	482
450717bc	483	counter++;
b8093789	484
	485	if(!ok && counter > nkeys){
	486	Log("No histogram with enough statistics for reference. Exit.");
5db29457	487	return 0;
b8093789	488	}
516e7ab3	489	}
3c0265c1	490
516e7ab3	491	Log(Form("reference histogram %s, %.1f entries, mean=%.3f, rms=%.3f.",
	492	hRef->GetName(),hRef->GetEntries(),
	493	hRef->GetMean(),hRef->GetRMS()));
	494
	495	Double_t refMean=hRef->GetMean();
3c0265c1	496
516e7ab3	497	// Calculates relative calibration coefficients for all non-zero channels
3c0265c1	498
516e7ab3	499	for(Int_t mod=0; mod<nMod; mod++) {
	500	for(Int_t col=0; col<nCol; col++) {
	501	for(Int_t row=0; row<nRow; row++) {
450717bc	502
	503	//High Gain to Low Gain ratio
	504	Float_t ratio = HG2LG(mod,row,col,&f);
	505	calibData.SetHighLowRatioEmc(mod+1,col+1,row+1,ratio);
	506
	507	sprintf(hnam,"%d_%d_%d_1",mod,row,col); // high gain!
	508	h2 = (TH2F*)f.Get(hnam);
	509
516e7ab3	510	//TODO: dead channels exclusion!
450717bc	511	if(h2) {
450717bc	512	h1 = h2->ProjectionX();
306e5917	513	h1->GetXaxis()->SetRange(10,1000); //to cut off saturation peak and noise
450717bc	514	coeff = h1->GetMean()/refMean;
64d8f3f1	515	if(coeff>0)
da2ee9fc	516	calibData.SetADCchannelEmc(mod+1,col+1,row+1,1./coeff);
64d8f3f1	517	else
da2ee9fc	518	calibData.SetADCchannelEmc(mod+1,col+1,row+1,1.);
516e7ab3	519	AliInfo(Form("mod %d col %d row %d coeff %f\n",mod,col,row,coeff));
	520	}
	521	else
da2ee9fc	522	calibData.SetADCchannelEmc(mod+1,col+1,row+1,1.);
1ab07e55	523	}
1ab07e55	524	}
1ab07e55	525	}
516e7ab3	526
516e7ab3	527	f.Close();
1ab07e55	528	}
516e7ab3	529
5db29457	530	return 1;
1ab07e55	531	}
450717bc	532
9f43d7da	533
450717bc	534