[u/mrichter/AliRoot.git] / PWG1 / PilotTrain / PilotAnalysis.C

#include "Riostream.h"
void LoadLibraries();
void AddAnalysisTasks(); 
class AliAnalysisAlien;                                                                                                                    
AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode);

Int_t runNumbers[5] = {121040};

Bool_t doQAsym        = 1;
Bool_t doVZERO        = 0;   // there is a 2nd file
Bool_t doVertex       = 0;
Bool_t doSPD          = 0;   // needs RP   
Bool_t doFMD          = 0;
Bool_t doTPC          = 0;
Bool_t doEventStat    = 1;
Bool_t doSDD          = 0;   // needs RP
Bool_t doSSDdEdx      = 0;
// new 
Bool_t doTRD          = 0;
Bool_t doITS          = 0;
Bool_t doCALO         = 0;
Bool_t doMUONTrig     = 0;
Bool_t doImpParRes    = 0;
Bool_t doMUON         = 0;

Bool_t doMUONEff      = 0;   // NEEDS geometry
Bool_t doV0           = 0;   // NEEDS MCtruth 

TString     train_name         = "QA";      // QA local folder name
TString     train_tag          = "";        // Train special tag appended to 
                                            // visible name. ("sim", "pp", ...)
               // Name in train page (DON'T CHANGE)
TString     visible_name       = Form("QA$2_$3%s", train_tag.Data()); //# FIXED #
TString     job_comment        = "PWG1 QA train"; // Can add observations here
               // Job tag (DON'T CHANGE)
TString     job_tag            = Form("%s: %s", visible_name.Data(), job_comment.Data());
               // Package versions - Modify as needed
TString     root_version       = "v5-27-05";
TString     aliroot_version    = "v4-20-07-AN";
               // Production directory - change as needed for test mode
TString     grid_datadir       = "/alice/data/2010/LHC10c";
               // Work directory in GRID (DON'T CHANGE)
TString     grid_workdir       = "/alice/cern.ch/user/a/alidaq/QA/QA$2";
               // Job splitting
Int_t       grid_split         = 20;       // Splitting
               // Debug level
Int_t       debug_level        = 0;        // Debugging
               // Data pattern - change as needed for test mode
TString     data_pattern       = "*ESDs/pass2/*ESDs.root";
               // Output directory (DON'T CHANGE)
TString     alien_outdir       = "$1/QA$2";
               // Input collection (production mode)
TString     data_collection    = "$1/qa1.xml";
TString     mergeExcludes      = ""; // Files to be excluded for merging
TString     terminateFiles     = ""; // Files produced during Terminate

Bool_t useProductionMode       = kTRUE;
Bool_t useMergeViaJDL          = kTRUE;
Bool_t useFastReadOption       = kTRUE;
Bool_t useOverwriteMode        = kFALSE;
Bool_t useDevelopmentVersion   = kFALSE;

void PilotAnalysis(const char *plugin_mode = "full")
{
  TString smode(plugin_mode);
  smode.ToLower();
  if (smode == "test") useProductionMode = kFALSE;
  if (!useProductionMode) {
     TGrid::Connect("alien://");
     if (!gGrid || !gGrid->IsConnected()) {
       ::Error("PilotAnalysis", "No grid connection");
       return;
     }
  }   
  // Write configuration
  TString cdir = gSystem->WorkingDirectory();
  gSystem->MakeDirectory(train_name);
  gSystem->ChangeDirectory(train_name);
  ofstream out;
  out.open(Form("%sConfig.C",train_name.Data()), ios::out);
  out << "{" << endl;
  out << "   train_name      = " << "\"" << train_name.Data() << "\";" << endl;
  out << "   root_version    = " << "\"" << root_version.Data() << "\";" << endl;
  out << "   aliroot_version = " << "\"" << aliroot_version.Data() << "\";" << endl;
  out << "   grid_datadir   = " << "\"" << grid_datadir.Data() << "\";" << endl;
  if (!alien_outdir.Length()) alien_outdir = Form("output_%s",train_name.Data());
  out << "   alien_outdir    = " << "\"" << alien_outdir.Data() << "\";" << endl;
  out << "   doQAsim         = " << doQAsym << ";" << endl;
  out << "   doVZERO         = " << doVZERO << ";" << endl;
  out << "   doVertex        = " << doVertex << ";" << endl;
  out << "   doSPD           = " << doSPD << ";" << endl;
  out << "   doSDD           = " << doSDD << ";" << endl;
  out << "   doSSDdEdx       = " << doSSDdEdx << ";" << endl;
  out << "   doFMD           = " << doFMD << ";" << endl;
  out << "   doTPC           = " << doTPC << ";" << endl;
  out << "   doTRD           = " << doTRD << ";" << endl;
  out << "   doImpParRes     = " << doImpParRes << ";" << endl;
  out << "   doMUON          = " << doMUON << ";" << endl;
  out << "   doEventStat     = " << doEventStat << ";" << endl;
  out << "}" << endl;
  out.close();
  
  // Load libraries
  gSystem->SetIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_ROOT -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TRD");
  LoadLibraries();
  // Create manager
  AliAnalysisManager *mgr  = new AliAnalysisManager("PilotAnalysis", "Production train");
  mgr->SetNSysInfo(100);
  // Input handler
  AliESDInputHandlerRP *esdHandler = new AliESDInputHandlerRP();
  esdHandler->SetReadFriends(kTRUE);
  esdHandler->SetActiveBranches("ESDfriend");
  mgr->SetInputEventHandler(esdHandler);
  mgr->SetDebugLevel(debug_level);
  mgr->SetSaveCanvases(kFALSE);
  
  // AnalysisTasks
  AddAnalysisTasks();
  // Grid handler
  AliAnalysisAlien *alienHandler = CreateAlienHandler(plugin_mode);
  mgr->SetGridHandler(alienHandler);
  if (mgr->InitAnalysis()) {                                                                                                              
    mgr->PrintStatus(); 
    mgr->StartAnalysis("grid");
  }
}

void LoadLibraries()
{
  gSystem->Load("libANALYSIS");
  gSystem->Load("libANALYSISalice");
  gSystem->Load("libCORRFW");
  gSystem->Load("libTENDER");
  gSystem->Load("libPWG0base.so");
  gSystem->Load("libPWG0dep.so");
  gSystem->Load("libPWG0selectors.so");
  gSystem->Load("libPWG1.so");
  gSystem->Load("libPWG2.so");
  gSystem->Load("libPWG2forward.so");

  if (doCALO) {
     gSystem->Load("libEMCALUtils");
     gSystem->Load("libPWG4PartCorrBase");
     gSystem->Load("libPWG4PartCorrDep");
  }  
  if(doMUONTrig) {
     gSystem->Load("libPWG3base");
     gSystem->Load("libPWG3muon");
     gSystem->Load("libPWG3muondep");
  }   
}

void AddAnalysisTasks()
{
  AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
  mgr->SetCommonFileName("QAresults.root");
  //
  // Event Statistics (Jan Fiete)
  //

  if (doEventStat) {
      gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
      AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection();
//      mgr->RegisterExtraFile("event_stat.root");
      if (!terminateFiles.IsNull()) terminateFiles += ",";
      terminateFiles += "event_stat.root";
  }
  // Vertexing (A. Dainese)
  // 
  if (doVertex) {
    gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskVertexESD.C");
    AliAnalysisTaskVertexESD* taskvertexesd =  AddTaskVertexESD();
    taskvertexesd->SelectCollisionCandidates();
  }  

  // TPC QA (E. Sicking)
  //
  if (doQAsym) {
    gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
    AliAnalysisTaskSE * taskqasim = AddTaskQAsym(0);
    taskqasim->SelectCollisionCandidates();
  }  
  //
  // VZERO QA  (C. Cheshkov)
  //
  if (doVZERO) {
    gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskVZEROQA.C");
    AliAnalysisTaskSE * taskv0qa = AddTaskVZEROQA(0);
//  taskv0qa->SelectCollisionCandidates();
  }
  //
  // TPC (Jacek Otwinowski)
  //
  if (doTPC) {
    gROOT->LoadMacro("$(ALICE_ROOT)/PWG1/TPC/macros/AddTaskPerformanceTPCQA.C");
    AliPerformanceTask *tpcQA = AddTaskPerformanceTPCQA(kFALSE, kTRUE);
  }  
  //
  // SPD (A. Mastroserio)
  //
  if (doSPD) {
    gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskSPDQA.C");
    AliAnalysisTaskSE* taskspdqa = AddTaskSPDQA();
    taskspdqa->SelectCollisionCandidates();
  }  
  //
  // SDD (F. Prino)
  //
  if (doSDD) {
    gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddSDDPoints.C");
    AliAnalysisTaskSE* tasksdd = AddSDDPoints();
    tasksdd->SelectCollisionCandidates();
  }
  //
  // SSD dEdx (Marek Chojnacki)
  //
  if (doSSDdEdx) {
    gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskdEdxSSDQA.C");
    AliAnalysisTaskSE* taskssddedx = AddTaskdEdxSSDQA();
    taskssddedx->SelectCollisionCandidates();
  }

  //
  // ITS
  //
  if (doITS) {
      gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskPerformanceITS.C");
      AliAnalysisTaskITSTrackingCheck *itsQA = AddTaskPerformanceITS(kFALSE);
  }
  //
  // TRD (Alex Bercuci, M. Fasel) 
  //
  if(doTRD) {
      gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTrainPerformanceTRD.C");
      // steer individual TRD tasks
      Bool_t 
      doCheckESD(kTRUE),  // AliTRDcheckESD
      doCheckDET(kTRUE),  // AliTRDcheckDET
      doEffic(kTRUE),     // AliTRDefficiency
      doResolution(kTRUE),// AliTRDresolution
      doCheckPID(kTRUE),  // AliTRDcheckPID
      doV0Monitor(kFALSE);// AliTRDv0Monitor
      AddTrainPerformanceTRD(Translate(doCheckESD, doCheckDET, doEffic, doResolution, doCheckPID, doV0Monitor));
  }

  //
  // Calorimetry (Gustavo Conesa)
  //

  if(doCALO) {
      gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
      AliAnalysisTaskParticleCorrelation *taskCaloQA = AddTaskCalorimeterQA("ESD", kTRUE, kFALSE);
      taskCaloQA->SetDebugLevel(0);
  }

  //
  // Muon Trigger
  //
  
  if(doMUONTrig) {
      gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskMTRchamberEfficiency.C");
      AliAnalysisTaskTrigChEff *taskMuonTrig = AddTaskMTRchamberEfficiency();
  }

  //
  // Muon Efficiency
  //

  if(doMUONEff) {
      gROOT->LoadMacro("$ALICE_ROOT/PWG3/muondep/AddTaskMUONTrackingEfficiency.C");
      AliAnalysisTaskMuonTrackingEff *taskMuonTrackEff = AddTaskMUONTrackingEfficiency();
  }
  
  //
  // V0-Decay Reconstruction (Ana Marin)
  // 

  if (doV0) {
      gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskV0QA.C");
      AliAnalysisTaskV0QA *taskv0QA = AddTaskV0QA(kFALSE);
  }
  // FMD (Hans Hjersing Dalsgaard)
  //
  if (doFMD) {
    gROOT->LoadMacro("$ALICE_ROOT/PWG2/FORWARD/analysis/AddTaskFMD.C");
    AliAnalysisTaskSE* taskfmd = AddTaskFMD();
    taskfmd->SelectCollisionCandidates();
  }  
  // Impact parameter resolution (xianbao.yuan@pd.infn.it, andrea.dainese@pd.infn.it)
  //
  if (doImpParRes) {
    gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskImpParRes.C");
    AliAnalysisTaskSE* taskimpparres= AddTaskImpParRes();
    taskimpparres->SelectCollisionCandidates();
  }  
  // MUON QA (Philippe Pillot)
  //
  if (doMUON) {
    gROOT->LoadMacro("$ALICE_ROOT/PWG3/muon/AddTaskMuonQA.C");
    AliAnalysisTaskSE* taskmuonqa= AddTaskMuonQA();
  }  
}

//______________________________________________________________________________
AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
{
// Check if user has a valid token, otherwise make one. This has limitations.
// One can always follow the standard procedure of calling alien-token-init then
//   source /tmp/gclient_env_$UID in the current shell.
   if (!AliAnalysisGrid::CreateToken()) return NULL;
   AliAnalysisAlien *plugin = new AliAnalysisAlien();
// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
   plugin->SetRunMode(plugin_mode);
   if (useProductionMode) {
      plugin->SetProductionMode();
      plugin->AddDataFile(data_collection);
   }   
   plugin->SetJobTag(job_tag);
   plugin->SetNtestFiles(1);
   plugin->SetCheckCopy(kFALSE);
   plugin->SetOneStageMerging(kTRUE);
// Set versions of used packages
   plugin->SetAPIVersion("V1.1x");
   plugin->SetROOTVersion(root_version);
   plugin->SetAliROOTVersion(aliroot_version);
// Declare input data to be processed.
// Method 1: Create automatically XML collections using alien 'find' command.
// Define production directory LFN
   plugin->SetGridDataDir(grid_datadir);
// Set data search pattern
   plugin->SetDataPattern(data_pattern);
// ...then add run numbers to be considered
//   if (!iAODanalysis) plugin->SetRunRange(run_range[0], run_range[1]);
//   plugin->SetOutputSingleFolder("output");
   if (!useProductionMode) {
      plugin->SetRunPrefix("000");
      plugin->SetOutputToRunNo();
      for (Int_t i=0; i<2; i++) {
         if (!runNumbers[i]) break;
         plugin->AddRunNumber(runNumbers[i]);
      }   
   }
// Define alien work directory where all files will be copied. Relative to alien $HOME.
   plugin->SetGridWorkingDir(grid_workdir);
// Declare alien output directory. Relative to working directory.
   if (alien_outdir.IsNull()) alien_outdir = Form("output_%s",train_name.Data());
   plugin->SetGridOutputDir(alien_outdir);

   if (useDevelopmentVersion) {
     plugin->EnablePackage("STEERBase");
     plugin->EnablePackage("ESD");
     plugin->EnablePackage("AOD");
     plugin->EnablePackage("ANALYSIS");
     plugin->EnablePackage("ANALYSISalice");
   }

// Declare the analysis source files names separated by blancs. To be compiled runtime
// using ACLiC on the worker nodes.
// Declare all libraries (other than the default ones for the framework. These will be
// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
   plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TRD");
   
   plugin->SetAdditionalLibs("libCORRFW.so libTENDER.so libPWG0base.so libPWG0dep.so libPWG0selectors.so libPWG1.so libPWG2.so \
                              libPWG2forward.so libEMCALUtils.so libPWG4PartCorrBase.so libPWG4PartCorrDep.so \
                              libPWG3base.so libPWG3muon.so libPWG3muondep.so");
     
// Declare the output file names separated by blancs.
// (can be like: file.root or file.root@ALICE::Niham::File)
   plugin->SetDefaultOutputs();
   plugin->SetMaxMergeFiles(20);
   plugin->SetNrunsPerMaster(1);
   
   // Put default output files to archive
   AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
   TIter next(mgr->GetOutputs());
   AliAnalysisDataContainer *output;
   if (!mergeExcludes.IsNull()) plugin->SetMergeExcludes(mergeExcludes);
   if (!terminateFiles.IsNull()) plugin->SetTerminateFiles(terminateFiles);
// Set friends
// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
   plugin->SetAnalysisMacro(Form("%s.C", train_name.Data()));
// Optionally set a name for the generated validation script
   plugin->SetValidationScript("validation.sh");
// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
   plugin->SetSplitMaxInputFileNumber(grid_split);
// Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
//   plugin->SetMaxInitFailed(5);
// Optionally modify the number of replicas
   plugin->SetNumberOfReplicas(4);
// Optionally resubmit threshold.
//   plugin->SetMasterResubmitThreshold(90);
// Optionally set time to live (default 30000 sec)
   plugin->SetTTL(70000);
// Optionally set input format (default xml-single)
   plugin->SetInputFormat("xml-single");
// Optionally modify the name of the generated JDL (default analysis.jdl)
   plugin->SetJDLName(Form("%s.jdl", train_name.Data()));
// Optionally modify the executable name (default analysis.sh)
   plugin->SetExecutable(Form("%s.sh", train_name.Data()));
// Optionally modify job price (default 1)
   plugin->SetPrice(1);      
// Optionally modify split mode (default 'se')    
   plugin->SetSplitMode("se");
   plugin->SetExecutableCommand("aliroot -b -q");
// Merge via JDL
   plugin->SetMergeViaJDL(useMergeViaJDL);
// Use fastread option
   plugin->SetFastReadOption(useFastReadOption);
// UseOverwrite mode
   plugin->SetOverwriteMode(useOverwriteMode);   
/*********************************************************
 ***     PROOF MODE SPECIFIC SETTINGS         ************
 *********************************************************/
// Proof cluster
//   plugin->SetProofCluster("alice-caf");
   plugin->SetProofCluster("skaf.saske.sk");
// Dataset to be used   
   plugin->SetProofDataSet("/alice/data/LHC10e_000128175_p1#esdTree");
// May need to reset proof. Supported modes: 0-no reset, 1-soft, 2-hard
   plugin->SetProofReset(0);
// May limit number of workers
   plugin->SetNproofWorkers(20);   
// May use a specific version of root installed in proof
   plugin->SetRootVersionForProof("current_dbg");
// May set the aliroot mode. Check http://aaf.cern.ch/node/83 
   plugin->SetAliRootMode("ALIROOT"); // Loads AF libs by default
// May request ClearPackages (individual ClearPackage not supported)
   plugin->SetClearPackages(kFALSE);
// Plugin test mode works only providing a file containing test file locations
   plugin->SetFileForTestMode(gSystem->ExpandPathName("$ALICE_ROOT/PWG1/PilotTrain/files.txt"));
   return plugin;
}
Commit	Line	Data
fe0275ad	1	#include "Riostream.h"
f59ecfbc	2	void LoadLibraries();
	3	void AddAnalysisTasks();
	4	class AliAnalysisAlien;
	5	AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode);
	6
a05adbe9	7	Int_t runNumbers[5] = {121040};
574b2e7b	8
9bdd18e3	9	Bool_t doQAsym = 1;
	10	Bool_t doVZERO = 0; // there is a 2nd file
	11	Bool_t doVertex = 0;
	12	Bool_t doSPD = 0; // needs RP
	13	Bool_t doFMD = 0;
	14	Bool_t doTPC = 0;
	15	Bool_t doEventStat = 1;
	16	Bool_t doSDD = 0; // needs RP
	17	Bool_t doSSDdEdx = 0;
8e52a034	18	// new
9bdd18e3	19	Bool_t doTRD = 0;
	20	Bool_t doITS = 0;
	21	Bool_t doCALO = 0;
	22	Bool_t doMUONTrig = 0;
	23	Bool_t doImpParRes = 0;
	24	Bool_t doMUON = 0;
a05adbe9	25
9bdd18e3	26	Bool_t doMUONEff = 0; // NEEDS geometry
9bdd18e3	27	Bool_t doV0 = 0; // NEEDS MCtruth
f59ecfbc	28
9bdd18e3	29	TString train_name = "QA"; // QA local folder name
	30	TString train_tag = ""; // Train special tag appended to
	31	// visible name. ("sim", "pp", ...)
	32	// Name in train page (DON'T CHANGE)
	33	TString visible_name = Form("QA$2_$3%s", train_tag.Data()); //# FIXED #
	34	TString job_comment = "PWG1 QA train"; // Can add observations here
	35	// Job tag (DON'T CHANGE)
ab93cb3c	36	TString job_tag = Form("%s: %s", visible_name.Data(), job_comment.Data());
9bdd18e3	37	// Package versions - Modify as needed
	38	TString root_version = "v5-27-05";
	39	TString aliroot_version = "v4-20-07-AN";
	40	// Production directory - change as needed for test mode
574b2e7b	41	TString grid_datadir = "/alice/data/2010/LHC10c";
9bdd18e3	42	// Work directory in GRID (DON'T CHANGE)
	43	TString grid_workdir = "/alice/cern.ch/user/a/alidaq/QA/QA$2";
	44	// Job splitting
	45	Int_t grid_split = 20; // Splitting
	46	// Debug level
	47	Int_t debug_level = 0; // Debugging
	48	// Data pattern - change as needed for test mode
a05adbe9	49	TString data_pattern = "ESDs/pass2/ESDs.root";
9bdd18e3	50	// Output directory (DON'T CHANGE)
	51	TString alien_outdir = "$1/QA$2";
	52	// Input collection (production mode)
	53	TString data_collection = "$1/qa1.xml";
	54	TString mergeExcludes = ""; // Files to be excluded for merging
	55	TString terminateFiles = ""; // Files produced during Terminate
fe0275ad	56
574b2e7b	57	Bool_t useProductionMode = kTRUE;
	58	Bool_t useMergeViaJDL = kTRUE;
	59	Bool_t useFastReadOption = kTRUE;
9bdd18e3	60	Bool_t useOverwriteMode = kFALSE;
574b2e7b	61	Bool_t useDevelopmentVersion = kFALSE;
fe0275ad	62
f59ecfbc	63	void PilotAnalysis(const char *plugin_mode = "full")
f59ecfbc	64	{
9bdd18e3	65	TString smode(plugin_mode);
	66	smode.ToLower();
	67	if (smode == "test") useProductionMode = kFALSE;
	68	if (!useProductionMode) {
	69	TGrid::Connect("alien://");
	70	if (!gGrid \|\| !gGrid->IsConnected()) {
	71	::Error("PilotAnalysis", "No grid connection");
	72	return;
	73	}
	74	}
fe0275ad	75	// Write configuration
	76	TString cdir = gSystem->WorkingDirectory();
	77	gSystem->MakeDirectory(train_name);
	78	gSystem->ChangeDirectory(train_name);
	79	ofstream out;
	80	out.open(Form("%sConfig.C",train_name.Data()), ios::out);
	81	out << "{" << endl;
	82	out << " train_name = " << "\"" << train_name.Data() << "\";" << endl;
	83	out << " root_version = " << "\"" << root_version.Data() << "\";" << endl;
	84	out << " aliroot_version = " << "\"" << aliroot_version.Data() << "\";" << endl;
	85	out << " grid_datadir = " << "\"" << grid_datadir.Data() << "\";" << endl;
	86	if (!alien_outdir.Length()) alien_outdir = Form("output_%s",train_name.Data());
	87	out << " alien_outdir = " << "\"" << alien_outdir.Data() << "\";" << endl;
	88	out << " doQAsim = " << doQAsym << ";" << endl;
	89	out << " doVZERO = " << doVZERO << ";" << endl;
	90	out << " doVertex = " << doVertex << ";" << endl;
	91	out << " doSPD = " << doSPD << ";" << endl;
	92	out << " doSDD = " << doSDD << ";" << endl;
574b2e7b	93	out << " doSSDdEdx = " << doSSDdEdx << ";" << endl;
fe0275ad	94	out << " doFMD = " << doFMD << ";" << endl;
fe0275ad	95	out << " doTPC = " << doTPC << ";" << endl;
a05adbe9	96	out << " doTRD = " << doTRD << ";" << endl;
	97	out << " doImpParRes = " << doImpParRes << ";" << endl;
	98	out << " doMUON = " << doMUON << ";" << endl;
fe0275ad	99	out << " doEventStat = " << doEventStat << ";" << endl;
	100	out << "}" << endl;
	101	out.close();
	102
f59ecfbc	103	// Load libraries
574b2e7b	104	gSystem->SetIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_ROOT -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TRD");
f59ecfbc	105	LoadLibraries();
	106	// Create manager
	107	AliAnalysisManager *mgr = new AliAnalysisManager("PilotAnalysis", "Production train");
574b2e7b	108	mgr->SetNSysInfo(100);
f59ecfbc	109	// Input handler
f59ecfbc	110	AliESDInputHandlerRP *esdHandler = new AliESDInputHandlerRP();
574b2e7b	111	esdHandler->SetReadFriends(kTRUE);
f59ecfbc	112	esdHandler->SetActiveBranches("ESDfriend");
f59ecfbc	113	mgr->SetInputEventHandler(esdHandler);
9bdd18e3	114	mgr->SetDebugLevel(debug_level);
9bdd18e3	115	mgr->SetSaveCanvases(kFALSE);
fe0275ad	116
f59ecfbc	117	// AnalysisTasks
	118	AddAnalysisTasks();
	119	// Grid handler
fe0275ad	120	AliAnalysisAlien *alienHandler = CreateAlienHandler(plugin_mode);
f59ecfbc	121	mgr->SetGridHandler(alienHandler);
	122	if (mgr->InitAnalysis()) {
	123	mgr->PrintStatus();
	124	mgr->StartAnalysis("grid");
	125	}
	126	}
	127
	128	void LoadLibraries()
	129	{
e583cb58	130	gSystem->Load("libANALYSIS");
	131	gSystem->Load("libANALYSISalice");
	132	gSystem->Load("libCORRFW");
	133	gSystem->Load("libTENDER");
f59ecfbc	134	gSystem->Load("libPWG0base.so");
	135	gSystem->Load("libPWG0dep.so");
	136	gSystem->Load("libPWG0selectors.so");
	137	gSystem->Load("libPWG1.so");
	138	gSystem->Load("libPWG2.so");
	139	gSystem->Load("libPWG2forward.so");
e583cb58	140
e583cb58	141	if (doCALO) {
	142	gSystem->Load("libEMCALUtils");
	143	gSystem->Load("libPWG4PartCorrBase");
	144	gSystem->Load("libPWG4PartCorrDep");
f59ecfbc	145	}
9bdd18e3	146	if(doMUONTrig) {
e583cb58	147	gSystem->Load("libPWG3base");
	148	gSystem->Load("libPWG3muon");
	149	gSystem->Load("libPWG3muondep");
	150	}
f59ecfbc	151	}
	152
	153	void AddAnalysisTasks()
	154	{
574b2e7b	155	AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
574b2e7b	156	mgr->SetCommonFileName("QAresults.root");
574b2e7b	157	//
	158	// Event Statistics (Jan Fiete)
	159	//
	160
	161	if (doEventStat) {
	162	gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPhysicsSelection.C");
	163	AliPhysicsSelectionTask* physSelTask = AddTaskPhysicsSelection();
9bdd18e3	164	// mgr->RegisterExtraFile("event_stat.root");
	165	if (!terminateFiles.IsNull()) terminateFiles += ",";
	166	terminateFiles += "event_stat.root";
574b2e7b	167	}
f59ecfbc	168	// Vertexing (A. Dainese)
	169	//
	170	if (doVertex) {
	171	gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskVertexESD.C");
	172	AliAnalysisTaskVertexESD* taskvertexesd = AddTaskVertexESD();
	173	taskvertexesd->SelectCollisionCandidates();
	174	}
	175
	176	// TPC QA (E. Sicking)
	177	//
	178	if (doQAsym) {
	179	gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskQAsym.C");
574b2e7b	180	AliAnalysisTaskSE * taskqasim = AddTaskQAsym(0);
f59ecfbc	181	taskqasim->SelectCollisionCandidates();
	182	}
	183	//
	184	// VZERO QA (C. Cheshkov)
	185	//
	186	if (doVZERO) {
	187	gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskVZEROQA.C");
	188	AliAnalysisTaskSE * taskv0qa = AddTaskVZEROQA(0);
e583cb58	189	// taskv0qa->SelectCollisionCandidates();
f59ecfbc	190	}
f59ecfbc	191	//
	192	// TPC (Jacek Otwinowski)
	193	//
	194	if (doTPC) {
	195	gROOT->LoadMacro("$(ALICE_ROOT)/PWG1/TPC/macros/AddTaskPerformanceTPCQA.C");
	196	AliPerformanceTask *tpcQA = AddTaskPerformanceTPCQA(kFALSE, kTRUE);
	197	}
	198	//
	199	// SPD (A. Mastroserio)
	200	//
	201	if (doSPD) {
	202	gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskSPDQA.C");
	203	AliAnalysisTaskSE* taskspdqa = AddTaskSPDQA();
574b2e7b	204	taskspdqa->SelectCollisionCandidates();
e583cb58	205	}
f59ecfbc	206	//
	207	// SDD (F. Prino)
	208	//
	209	if (doSDD) {
	210	gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddSDDPoints.C");
	211	AliAnalysisTaskSE* tasksdd = AddSDDPoints();
	212	tasksdd->SelectCollisionCandidates();
	213	}
574b2e7b	214	//
	215	// SSD dEdx (Marek Chojnacki)
	216	//
	217	if (doSSDdEdx) {
	218	gROOT->LoadMacro("$ALICE_ROOT/PWG1/PilotTrain/AddTaskdEdxSSDQA.C");
	219	AliAnalysisTaskSE* taskssddedx = AddTaskdEdxSSDQA();
	220	taskssddedx->SelectCollisionCandidates();
	221	}
8e52a034	222
e583cb58	223	//
	224	// ITS
	225	//
	226	if (doITS) {
	227	gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskPerformanceITS.C");
	228	AliAnalysisTaskITSTrackingCheck *itsQA = AddTaskPerformanceITS(kFALSE);
	229	}
8e52a034	230	//
	231	// TRD (Alex Bercuci, M. Fasel)
	232	//
	233	if(doTRD) {
e583cb58	234	gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTrainPerformanceTRD.C");
92238d29	235	// steer individual TRD tasks
	236	Bool_t
	237	doCheckESD(kTRUE), // AliTRDcheckESD
	238	doCheckDET(kTRUE), // AliTRDcheckDET
	239	doEffic(kTRUE), // AliTRDefficiency
	240	doResolution(kTRUE),// AliTRDresolution
	241	doCheckPID(kTRUE), // AliTRDcheckPID
	242	doV0Monitor(kFALSE);// AliTRDv0Monitor
	243	AddTrainPerformanceTRD(Translate(doCheckESD, doCheckDET, doEffic, doResolution, doCheckPID, doV0Monitor));
8e52a034	244	}
	245
	246	//
	247	// Calorimetry (Gustavo Conesa)
	248	//
	249
	250	if(doCALO) {
	251	gROOT->LoadMacro("$ALICE_ROOT/PWG4/macros/QA/AddTaskCalorimeterQA.C");
	252	AliAnalysisTaskParticleCorrelation *taskCaloQA = AddTaskCalorimeterQA("ESD", kTRUE, kFALSE);
2efff183	253	taskCaloQA->SetDebugLevel(0);
8e52a034	254	}
	255
	256	//
	257	// Muon Trigger
	258	//
	259
	260	if(doMUONTrig) {
	261	gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskMTRchamberEfficiency.C");
	262	AliAnalysisTaskTrigChEff *taskMuonTrig = AddTaskMTRchamberEfficiency();
	263	}
	264
	265	//
	266	// Muon Efficiency
	267	//
	268
	269	if(doMUONEff) {
	270	gROOT->LoadMacro("$ALICE_ROOT/PWG3/muondep/AddTaskMUONTrackingEfficiency.C");
	271	AliAnalysisTaskMuonTrackingEff *taskMuonTrackEff = AddTaskMUONTrackingEfficiency();
	272	}
	273
	274	//
	275	// V0-Decay Reconstruction (Ana Marin)
	276	//
	277
	278	if (doV0) {
	279	gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskV0QA.C");
	280	AliAnalysisTaskV0QA *taskv0QA = AddTaskV0QA(kFALSE);
	281	}
574b2e7b	282	// FMD (Hans Hjersing Dalsgaard)
	283	//
	284	if (doFMD) {
9bdd18e3	285	gROOT->LoadMacro("$ALICE_ROOT/PWG2/FORWARD/analysis/AddTaskFMD.C");
574b2e7b	286	AliAnalysisTaskSE* taskfmd = AddTaskFMD();
	287	taskfmd->SelectCollisionCandidates();
	288	}
a05adbe9	289	// Impact parameter resolution (xianbao.yuan@pd.infn.it, andrea.dainese@pd.infn.it)
	290	//
	291	if (doImpParRes) {
	292	gROOT->LoadMacro("$ALICE_ROOT/PWG1/macros/AddTaskImpParRes.C");
	293	AliAnalysisTaskSE* taskimpparres= AddTaskImpParRes();
	294	taskimpparres->SelectCollisionCandidates();
	295	}
	296	// MUON QA (Philippe Pillot)
	297	//
	298	if (doMUON) {
	299	gROOT->LoadMacro("$ALICE_ROOT/PWG3/muon/AddTaskMuonQA.C");
	300	AliAnalysisTaskSE* taskmuonqa= AddTaskMuonQA();
	301	}
f59ecfbc	302	}
	303
	304	//______________________________________________________________________________
	305	AliAnalysisAlien* CreateAlienHandler(const char *plugin_mode)
	306	{
	307	// Check if user has a valid token, otherwise make one. This has limitations.
	308	// One can always follow the standard procedure of calling alien-token-init then
	309	// source /tmp/gclient_env_$UID in the current shell.
	310	if (!AliAnalysisGrid::CreateToken()) return NULL;
	311	AliAnalysisAlien *plugin = new AliAnalysisAlien();
	312	// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
	313	plugin->SetRunMode(plugin_mode);
9bdd18e3	314	if (useProductionMode) {
	315	plugin->SetProductionMode();
	316	plugin->AddDataFile(data_collection);
	317	}
fe0275ad	318	plugin->SetJobTag(job_tag);
f59ecfbc	319	plugin->SetNtestFiles(1);
9bdd18e3	320	plugin->SetCheckCopy(kFALSE);
9bdd18e3	321	plugin->SetOneStageMerging(kTRUE);
f59ecfbc	322	// Set versions of used packages
f59ecfbc	323	plugin->SetAPIVersion("V1.1x");
fe0275ad	324	plugin->SetROOTVersion(root_version);
fe0275ad	325	plugin->SetAliROOTVersion(aliroot_version);
f59ecfbc	326	// Declare input data to be processed.
	327	// Method 1: Create automatically XML collections using alien 'find' command.
	328	// Define production directory LFN
fe0275ad	329	plugin->SetGridDataDir(grid_datadir);
f59ecfbc	330	// Set data search pattern
fe0275ad	331	plugin->SetDataPattern(data_pattern);
f59ecfbc	332	// ...then add run numbers to be considered
f59ecfbc	333	// if (!iAODanalysis) plugin->SetRunRange(run_range[0], run_range[1]);
574b2e7b	334	// plugin->SetOutputSingleFolder("output");
9bdd18e3	335	if (!useProductionMode) {
	336	plugin->SetRunPrefix("000");
	337	plugin->SetOutputToRunNo();
	338	for (Int_t i=0; i<2; i++) {
	339	if (!runNumbers[i]) break;
	340	plugin->AddRunNumber(runNumbers[i]);
	341	}
	342	}
f59ecfbc	343	// Define alien work directory where all files will be copied. Relative to alien $HOME.
9bdd18e3	344	plugin->SetGridWorkingDir(grid_workdir);
f59ecfbc	345	// Declare alien output directory. Relative to working directory.
fe0275ad	346	if (alien_outdir.IsNull()) alien_outdir = Form("output_%s",train_name.Data());
fe0275ad	347	plugin->SetGridOutputDir(alien_outdir);
f59ecfbc	348
574b2e7b	349	if (useDevelopmentVersion) {
	350	plugin->EnablePackage("STEERBase");
	351	plugin->EnablePackage("ESD");
	352	plugin->EnablePackage("AOD");
	353	plugin->EnablePackage("ANALYSIS");
	354	plugin->EnablePackage("ANALYSISalice");
	355	}
f59ecfbc	356
	357	// Declare the analysis source files names separated by blancs. To be compiled runtime
	358	// using ACLiC on the worker nodes.
	359	// Declare all libraries (other than the default ones for the framework. These will be
	360	// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
574b2e7b	361	plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TRD");
574b2e7b	362
9bdd18e3	363	plugin->SetAdditionalLibs("libCORRFW.so libTENDER.so libPWG0base.so libPWG0dep.so libPWG0selectors.so libPWG1.so libPWG2.so \
574b2e7b	364	libPWG2forward.so libEMCALUtils.so libPWG4PartCorrBase.so libPWG4PartCorrDep.so \
be4d3c6a	365	libPWG3base.so libPWG3muon.so libPWG3muondep.so");
f59ecfbc	366
	367	// Declare the output file names separated by blancs.
	368	// (can be like: file.root or file.root@ALICE::Niham::File)
	369	plugin->SetDefaultOutputs();
574b2e7b	370	plugin->SetMaxMergeFiles(20);
f59ecfbc	371	plugin->SetNrunsPerMaster(1);
f59ecfbc	372
f59ecfbc	373	// Put default output files to archive
f59ecfbc	374	AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();
	375	TIter next(mgr->GetOutputs());
	376	AliAnalysisDataContainer *output;
574b2e7b	377	if (!mergeExcludes.IsNull()) plugin->SetMergeExcludes(mergeExcludes);
9bdd18e3	378	if (!terminateFiles.IsNull()) plugin->SetTerminateFiles(terminateFiles);
f59ecfbc	379	// Set friends
f59ecfbc	380	// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
fe0275ad	381	plugin->SetAnalysisMacro(Form("%s.C", train_name.Data()));
9bdd18e3	382	// Optionally set a name for the generated validation script
9bdd18e3	383	plugin->SetValidationScript("validation.sh");
f59ecfbc	384	// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
9bdd18e3	385	plugin->SetSplitMaxInputFileNumber(grid_split);
f59ecfbc	386	// Optionally set number of failed jobs that will trigger killing waiting sub-jobs.
f59ecfbc	387	// plugin->SetMaxInitFailed(5);
9bdd18e3	388	// Optionally modify the number of replicas
9bdd18e3	389	plugin->SetNumberOfReplicas(4);
f59ecfbc	390	// Optionally resubmit threshold.
	391	// plugin->SetMasterResubmitThreshold(90);
	392	// Optionally set time to live (default 30000 sec)
	393	plugin->SetTTL(70000);
	394	// Optionally set input format (default xml-single)
	395	plugin->SetInputFormat("xml-single");
	396	// Optionally modify the name of the generated JDL (default analysis.jdl)
fe0275ad	397	plugin->SetJDLName(Form("%s.jdl", train_name.Data()));
f59ecfbc	398	// Optionally modify the executable name (default analysis.sh)
fe0275ad	399	plugin->SetExecutable(Form("%s.sh", train_name.Data()));
f59ecfbc	400	// Optionally modify job price (default 1)
	401	plugin->SetPrice(1);
	402	// Optionally modify split mode (default 'se')
	403	plugin->SetSplitMode("se");
	404	plugin->SetExecutableCommand("aliroot -b -q");
574b2e7b	405	// Merge via JDL
	406	plugin->SetMergeViaJDL(useMergeViaJDL);
	407	// Use fastread option
	408	plugin->SetFastReadOption(useFastReadOption);
	409	// UseOverwrite mode
	410	plugin->SetOverwriteMode(useOverwriteMode);
9bdd18e3	411	/*********************************************************
	412	* PROOF MODE SPECIFIC SETTINGS **********
	413	*********************************************************/
	414	// Proof cluster
	415	// plugin->SetProofCluster("alice-caf");
	416	plugin->SetProofCluster("skaf.saske.sk");
	417	// Dataset to be used
	418	plugin->SetProofDataSet("/alice/data/LHC10e_000128175_p1#esdTree");
	419	// May need to reset proof. Supported modes: 0-no reset, 1-soft, 2-hard
	420	plugin->SetProofReset(0);
	421	// May limit number of workers
	422	plugin->SetNproofWorkers(20);
	423	// May use a specific version of root installed in proof
	424	plugin->SetRootVersionForProof("current_dbg");
	425	// May set the aliroot mode. Check http://aaf.cern.ch/node/83
	426	plugin->SetAliRootMode("ALIROOT"); // Loads AF libs by default
	427	// May request ClearPackages (individual ClearPackage not supported)
	428	plugin->SetClearPackages(kFALSE);
	429	// Plugin test mode works only providing a file containing test file locations
	430	plugin->SetFileForTestMode(gSystem->ExpandPathName("$ALICE_ROOT/PWG1/PilotTrain/files.txt"));
f59ecfbc	431	return plugin;
f59ecfbc	432	}