[u/mrichter/AliRoot.git] / PWG4 / PartCorrBase / AliCaloTrackReader.h

#ifndef ALICALOTRACKREADER_H
#define ALICALOTRACKREADER_H
/* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
 * See cxx source for full Copyright notice     */
/* $Id:  $ */

//_________________________________________________________________________
// Base class for reading data: MonteCarlo, ESD or AOD, of PHOS EMCAL and 
// Central Barrel Tracking detectors.
// Not all MC particles/tracks/clusters are kept, some kinematical restrictions are done.
// Mother class of : AliCaloTrackESDReader: Fills ESD data in 3 TObjArrays (PHOS, EMCAL, CTS)
//                 : AliCaloTrackMCReader: Fills Kinematics data in 3 TObjArrays (PHOS, EMCAL, CTS)
//                 : AliCaloTrackAODReader: Fills AOD data in 3 TObjArrays (PHOS, EMCAL, CTS) 
//                          
// -- Author: Gustavo Conesa (INFN-LNF)

// --- ROOT system ---
#include "TObject.h" 
class TObjArray ; 
class TLorentzVector ;
#include "TString.h"
#include "TObjArray.h"
class TArrayF;  
class TTree ;
#include "TH2I.h"

//--- ANALYSIS system ---
class AliStack ; 
class AliHeader ; 
class AliGenEventHeader ; 
class AliVEvent;
class AliAODEvent;
class AliMCEvent;
class AliFiducialCut;
class AliAODMCHeader;
#include "AliPHOSGeoUtils.h"
#include "AliEMCALGeoUtils.h"

class AliCaloTrackReader : public TObject {

 public: 
  
  AliCaloTrackReader() ; // ctor
  AliCaloTrackReader(const AliCaloTrackReader & g) ; // cpy ctor
  AliCaloTrackReader & operator = (const AliCaloTrackReader & g) ;//cpy assignment
  virtual ~AliCaloTrackReader() ;//virtual dtor

  enum inputDataType {kESD, kAOD, kMC};
  
  //Select generated events, depending on comparison of pT hard and jets.
  virtual Bool_t ComparePtHardAndJetPt() ;
  virtual Bool_t IsPtHardAndJetPtComparisonSet() const {return  fComparePtHardAndJetPt ;}
  virtual void SetPtHardAndJetPtComparison(Bool_t compare) { fComparePtHardAndJetPt = compare ;}	
  virtual Float_t GetPtHardAndJetFactor() const {return  fPtHardAndJetPtFactor ;}
  virtual void SetPtHardAndJetPtFactor(Float_t factor) { fPtHardAndJetPtFactor = factor ;}		
	
  virtual void InitParameters();
  virtual void Print(const Option_t * opt) const;

  virtual Int_t GetDebug()         const { return fDebug ; }
  virtual void  SetDebug(Int_t d)        { fDebug = d ; }
  virtual Int_t GetDataType()      const { return fDataType ; }
  virtual void  SetDataType(Int_t data ) { fDataType = data ; }

  virtual Int_t   GetEventNumber()     const {return fEventNumber ; }
  virtual TString GetCurrentFileName() const {return fCurrentFileName ; }
	
  //Minimum pt setters and getters 
  virtual Float_t  GetEMCALPtMin() const { return fEMCALPtMin  ; }
  virtual Float_t  GetPHOSPtMin()  const { return fPHOSPtMin  ; }
  virtual Float_t  GetCTSPtMin()   const { return fCTSPtMin  ; }

  virtual void SetEMCALPtMin(Float_t  pt) { fEMCALPtMin = pt ; }
  virtual void SetPHOSPtMin(Float_t  pt)  { fPHOSPtMin = pt ; }
  virtual void SetCTSPtMin(Float_t  pt)   { fCTSPtMin = pt ; }
  
  //Input setters and getters

  Bool_t IsCTSSwitchedOn()  const { return fFillCTS ; }
  void SwitchOnCTS()    {fFillCTS = kTRUE ; }
  void SwitchOffCTS()   {fFillCTS = kFALSE ; }

  Bool_t IsEMCALSwitchedOn() const { return fFillEMCAL ; }
  void SwitchOnEMCAL()  {fFillEMCAL = kTRUE ; }
  void SwitchOffEMCAL() {fFillEMCAL = kFALSE ; }

  Bool_t IsPHOSSwitchedOn()  const { return fFillPHOS ; }
  void SwitchOnPHOS()   {fFillPHOS = kTRUE ; }
  void SwitchOffPHOS()  {fFillPHOS = kFALSE ; }

  Bool_t IsEMCALCellsSwitchedOn() const { return fFillEMCALCells ; }
  void SwitchOnEMCALCells()  {fFillEMCALCells = kTRUE ; }
  void SwitchOffEMCALCells() {fFillEMCALCells = kFALSE ; }

  Bool_t IsPHOSCellsSwitchedOn()  const { return fFillPHOSCells ; }
  void SwitchOnPHOSCells()   {fFillPHOSCells = kTRUE ; }
  void SwitchOffPHOSCells()  {fFillPHOSCells = kFALSE ; }

  virtual Bool_t FillInputEvent(const Int_t iEntry, const char *currentFileName)  ;
  virtual void FillInputCTS()   {;}
  virtual void FillInputEMCAL() {;}
  virtual void FillInputPHOS()  {;}
  virtual void FillInputEMCALCells() {;}
  virtual void FillInputPHOSCells()  {;}

  virtual TObjArray* GetAODCTS()   const {return fAODCTS ;}
  virtual TObjArray* GetAODEMCAL() const {return fAODEMCAL ;}
  virtual TObjArray* GetAODPHOS()  const {return fAODPHOS ;}
  virtual TNamed* GetEMCALCells()  const {return fEMCALCells ;}
  virtual TNamed* GetPHOSCells()   const {return fPHOSCells ;}

  //Get MC  informatio
  //Kinematics and galice.root available 
  virtual AliStack*    GetStack()      const ;
  virtual AliHeader*   GetHeader()     const ;
  virtual AliGenEventHeader* GetGenEventHeader() const ;
  //Filtered kinematics in AOD	
  virtual TClonesArray*   GetAODMCParticles(Int_t input = 0) const ;
  virtual AliAODMCHeader* GetAODMCHeader(Int_t input = 0)    const ;
	
  virtual AliVEvent*   GetInputEvent()  const {return fInputEvent;}
  virtual AliAODEvent* GetOutputEvent() const {return fOutputEvent;}
  virtual AliMCEvent*  GetMC()          const {return fMC;}
  virtual void         GetVertex(Double_t *) const {;}
  virtual void         GetSecondInputAODVertex(Double_t *) const {;}
  virtual Double_t     GetBField() const { return 0.;}
	
  virtual void Init();
	
  virtual void SetInputEvent(AliVEvent* const input)  {fInputEvent  = input;}
  virtual void SetOutputEvent(AliAODEvent* const aod) {fOutputEvent = aod;}
  virtual void SetMC(AliMCEvent* const mc)            {fMC  = mc;}

  virtual void ResetLists();

  virtual AliFiducialCut * GetFiducialCut() const {return  fFiducialCut ;}
  virtual void SetFiducialCut(AliFiducialCut * const fc) { fFiducialCut = fc ;}
	
  virtual void SetInputOutputMCEvent(AliVEvent* /*esd*/, AliAODEvent* /*aod*/, AliMCEvent* /*mc*/) {;}
	
  //Methods for mixing with external input file (AOD)
  virtual TTree* GetSecondInputAODTree() const {return  fSecondInputAODTree ; } 
  //virtual void SetSecondInputAODTree(TTree * tree) {fSecondInputAODTree = tree ;
  //												  fSecondInputAODEvent->ReadFromTree(tree);}//Connect tree and AOD event.
					
  virtual AliAODEvent* GetSecondInputAODEvent() const { return fSecondInputAODEvent ; } 
	
  TString GetSecondInputFileName() const    {return fSecondInputFileName ; }
  void SetSecondInputFileName(TString name) { fSecondInputFileName = name ; }

  Int_t GetSecondInputFirstEvent() const    {return fSecondInputFirstEvent ; }
  void SetSecondInputFirstEvent(Int_t iEvent0) { fSecondInputFirstEvent = iEvent0 ; }	
	
  Int_t GetAODCTSNormalInputEntries()   {if(!fSecondInputAODTree) { fAODCTSNormalInputEntries   = fAODCTS->GetEntriesFast()  ;}
										 return fAODCTSNormalInputEntries ; }
  Int_t GetAODEMCALNormalInputEntries() {if(!fSecondInputAODTree) { fAODEMCALNormalInputEntries = fAODEMCAL->GetEntriesFast();}
										 return fAODEMCALNormalInputEntries ; }
  Int_t GetAODPHOSNormalInputEntries()  {if(!fSecondInputAODTree) { fAODPHOSNormalInputEntries  = fAODPHOS->GetEntriesFast() ;}
										 return fAODPHOSNormalInputEntries ; }
	
  ULong_t GetTrackStatus() const    {return fTrackStatus ; }
  void SetTrackStatus(ULong_t bit) { fTrackStatus = bit ; }		
	
  void SwitchOnStack()              { fReadStack          = kTRUE  ; }
  void SwitchOffStack()             { fReadStack          = kFALSE ; }
  void SwitchOnAODMCParticles()     { fReadAODMCParticles = kTRUE  ; }
  void SwitchOffAODMCParticles()    { fReadAODMCParticles = kFALSE ; }
  Bool_t ReadStack()          const { return fReadStack            ; }
  Bool_t ReadAODMCParticles() const { return fReadAODMCParticles   ; }
	
  void SwitchOnCleanStdAOD()  {fCleanOutputStdAOD = kTRUE;}
  void SwitchOffCleanStdAOD() {fCleanOutputStdAOD = kFALSE;}
	
  void SetDeltaAODFileName(TString name ) {fDeltaAODFileName = name ; }
  TString GetDeltaAODFileName() const {return fDeltaAODFileName ; }

  void SetFiredTriggerClassName(TString name ) {fFiredTriggerClassName = name ; }
  TString GetFiredTriggerClassName() const {return fFiredTriggerClassName ; }
  virtual TString GetFiredTriggerClasses() {return "";}
	
  //Calorimeters Geometry Methods
  void SetEMCALGeometryName(TString name)   { fEMCALGeoName = name ; }
  TString EMCALGeometryName() const { return fEMCALGeoName ; }
  void InitEMCALGeometry() ; 
  AliEMCALGeoUtils * GetEMCALGeometry() const {return fEMCALGeo;}
  Bool_t IsEMCALGeoMatrixSet() {return fEMCALGeoMatrixSet; }

  void SetPHOSGeometryName(TString name)   { fPHOSGeoName = name ; }
  TString PHOSGeometryName() const { return fPHOSGeoName ; }
  void InitPHOSGeometry() ; 
  AliPHOSGeoUtils * GetPHOSGeometry() const {return fPHOSGeo;}	
  Bool_t IsPHOSGeoMatrixSet()  {return fPHOSGeoMatrixSet ; }

  void AnalyzeOnlyLED()     {fAnaLED = kTRUE;}
  void AnalyzeOnlyPhysics() {fAnaLED = kFALSE;}
	
  // Bad channels
	
  Bool_t IsBadChannelsRemovalSwitchedOn()  const { return fRemoveBadChannels ; }
  void SwitchOnBadChannelsRemoval()    {fRemoveBadChannels = kTRUE ; }
  void SwitchOffBadChannelsRemoval()   {fRemoveBadChannels = kFALSE ; }
	
  Int_t GetEMCALChannelStatus(Int_t iSM , Int_t iCol, Int_t iRow) const { return (Int_t) ((TH2I*)fEMCALBadChannelMap[iSM])->GetBinContent(iCol,iRow);}
  Int_t GetPHOSChannelStatus (Int_t imod, Int_t iCol, Int_t iRow) const { return (Int_t) ((TH2I*)fPHOSBadChannelMap[imod])->GetBinContent(iCol,iRow);}
	
  void SetEMCALChannelStatus(Int_t iSM , Int_t iCol, Int_t iRow, Double_t c = 1) { ((TH2I*)fEMCALBadChannelMap[iSM])->SetBinContent(iCol,iRow,c);}
  void SetPHOSChannelStatus (Int_t imod, Int_t iCol, Int_t iRow, Double_t c = 1) { ((TH2I*)fPHOSBadChannelMap[imod])->SetBinContent(iCol,iRow,c);}
	
  TH2I * GetEMCALChannelStatusMap(Int_t iSM) const {return (TH2I*)fEMCALBadChannelMap[iSM];}
  TH2I * GetPHOSChannelStatusMap(Int_t imod) const {return (TH2I*)fPHOSBadChannelMap[imod];}

  void SetEMCALChannelStatusMap(TObjArray map) {fEMCALBadChannelMap = map;}
  void SetPHOSChannelStatusMap (TObjArray map) {fPHOSBadChannelMap  = map;}
	
  Bool_t ClusterContainsBadChannel(TString calorimeter,UShort_t* cellList, Int_t nCells);
	
 protected:
  Int_t	           fEventNumber; // Event number
  TString          fCurrentFileName; // Current file name under analysis
  Int_t            fDataType ;   // Select MC:Kinematics, Data:ESD/AOD, MCData:Both
  Int_t            fDebug;       // Debugging level
  AliFiducialCut * fFiducialCut; //! Acceptance cuts
	
  Bool_t           fComparePtHardAndJetPt;  // In MonteCarlo, jet events, reject fake events with wrong jet energy.
  Float_t          fPtHardAndJetPtFactor;   // Factor between ptHard and jet pT to reject/accept event.

  Float_t        fCTSPtMin;      // pT Threshold on charged particles 
  Float_t        fEMCALPtMin;    // pT Threshold on emcal clusters
  Float_t        fPHOSPtMin;     // pT Threshold on phos clusters

  TObjArray *    fAODCTS ;        //! temporal referenced array with tracks
  TObjArray *    fAODEMCAL ;      //! temporal referenced array with EMCAL CaloClusters
  TObjArray *    fAODPHOS ;       //! temporal referenced array with PHOS CaloClusters
  TNamed *       fEMCALCells ;    //! temporal array with EMCAL CaloCells, ESD or AOD
  TNamed *       fPHOSCells ;     //! temporal array with PHOS CaloCells, ESD or AOD

  AliVEvent   *  fInputEvent;     //! pointer to esd or aod input
  AliAODEvent *  fOutputEvent;    //! pointer to aod output
  AliMCEvent  *  fMC;             //! Monte Carlo Event Handler  

  Bool_t         fFillCTS;        // use data from CTS
  Bool_t         fFillEMCAL;      // use data from EMCAL
  Bool_t         fFillPHOS;       // use data from PHOS
  Bool_t         fFillEMCALCells; // use data from EMCAL
  Bool_t         fFillPHOSCells;  // use data from PHOS

  TTree *        fSecondInputAODTree;    // Tree with second input AOD, for mixing analysis.	
  AliAODEvent*   fSecondInputAODEvent;   //! pointer to second input AOD event.
  TString        fSecondInputFileName;   // File with AOD data to mix with normal stream of data.
  Int_t          fSecondInputFirstEvent; // First event to be considered in the mixing.
	
  Int_t          fAODCTSNormalInputEntries;   // Number of entries in CTS   in case of standard input, larger with mixing.
  Int_t          fAODEMCALNormalInputEntries; // Number of entries in EMCAL in case of standard input, larger with mixing.
  Int_t          fAODPHOSNormalInputEntries;  // Number of entries in PHOS  in case of standard input, larger with mixing.
	
  ULong_t        fTrackStatus        ; // Track selection bit, select tracks refitted in TPC, ITS ...
  Bool_t         fReadStack          ; // Access kine information from stack
  Bool_t	     fReadAODMCParticles ; // Access kine information from filtered AOD MC particles
	
  Bool_t	     fCleanOutputStdAOD;   // clean the written standard tracks and caloclusters in output AOD
  TString        fDeltaAODFileName ;   // Delta AOD file name
  TString        fFiredTriggerClassName  ;  // Name of trigger event type used to do the analysis

  TString        fEMCALGeoName;       // Name of geometry to use for EMCAL.
  TString        fPHOSGeoName;        // Name of geometry to use for PHOS.	
  AliEMCALGeoUtils * fEMCALGeo ;      //! EMCAL geometry pointer
  AliPHOSGeoUtils  * fPHOSGeo  ;      //! PHOS  geometry pointer  
  Bool_t         fEMCALGeoMatrixSet;  // Check if the transformation matrix is set for EMCAL
  Bool_t         fPHOSGeoMatrixSet ;  // Check if the transformation matrix is set for PHOS
  Bool_t         fAnaLED;             // Analyze LED data only.
  Bool_t         fRemoveBadChannels;  // Check the channel status provided and remove clusters with bad channels
  TObjArray      fEMCALBadChannelMap; //! Array of histograms with map of bad channels, EMCAL
  TObjArray      fPHOSBadChannelMap;  //! Array of histograms with map of bad channels, PHOS

  ClassDef(AliCaloTrackReader,12)
} ;


#endif //ALICALOTRACKREADER_H
Commit	Line	Data
1c5acb87	1	#ifndef ALICALOTRACKREADER_H
	2	#define ALICALOTRACKREADER_H
	3	/* Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
	4	* See cxx source for full Copyright notice */
	5	/* $Id: $ */
	6
	7	//_________________________________________________________________________
	8	// Base class for reading data: MonteCarlo, ESD or AOD, of PHOS EMCAL and
	9	// Central Barrel Tracking detectors.
	10	// Not all MC particles/tracks/clusters are kept, some kinematical restrictions are done.
591cc579	11	// Mother class of : AliCaloTrackESDReader: Fills ESD data in 3 TObjArrays (PHOS, EMCAL, CTS)
	12	// : AliCaloTrackMCReader: Fills Kinematics data in 3 TObjArrays (PHOS, EMCAL, CTS)
	13	// : AliCaloTrackAODReader: Fills AOD data in 3 TObjArrays (PHOS, EMCAL, CTS)
1c5acb87	14	//
	15	// -- Author: Gustavo Conesa (INFN-LNF)
	16
	17	// --- ROOT system ---
	18	#include "TObject.h"
591cc579	19	class TObjArray ;
1c5acb87	20	class TLorentzVector ;
a97cd470	21	#include "TString.h"
8dacfd76	22	#include "TObjArray.h"
477d6cee	23	class TArrayF;
591cc579	24	class TTree ;
c1ac3823	25	#include "TH2I.h"
1c5acb87	26
	27	//--- ANALYSIS system ---
	28	class AliStack ;
	29	class AliHeader ;
	30	class AliGenEventHeader ;
477d6cee	31	class AliVEvent;
8dacfd76	32	class AliAODEvent;
477d6cee	33	class AliMCEvent;
ff45398a	34	class AliFiducialCut;
591cc579	35	class AliAODMCHeader;
afabc52f	36	#include "AliPHOSGeoUtils.h"
afabc52f	37	#include "AliEMCALGeoUtils.h"
1c5acb87	38
	39	class AliCaloTrackReader : public TObject {
	40
477d6cee	41	public:
477d6cee	42
1c5acb87	43	AliCaloTrackReader() ; // ctor
	44	AliCaloTrackReader(const AliCaloTrackReader & g) ; // cpy ctor
	45	AliCaloTrackReader & operator = (const AliCaloTrackReader & g) ;//cpy assignment
	46	virtual ~AliCaloTrackReader() ;//virtual dtor
	47
	48	enum inputDataType {kESD, kAOD, kMC};
	49
591cc579	50	//Select generated events, depending on comparison of pT hard and jets.
	51	virtual Bool_t ComparePtHardAndJetPt() ;
	52	virtual Bool_t IsPtHardAndJetPtComparisonSet() const {return fComparePtHardAndJetPt ;}
	53	virtual void SetPtHardAndJetPtComparison(Bool_t compare) { fComparePtHardAndJetPt = compare ;}
	54	virtual Float_t GetPtHardAndJetFactor() const {return fPtHardAndJetPtFactor ;}
	55	virtual void SetPtHardAndJetPtFactor(Float_t factor) { fPtHardAndJetPtFactor = factor ;}
	56
1c5acb87	57	virtual void InitParameters();
	58	virtual void Print(const Option_t * opt) const;
	59
	60	virtual Int_t GetDebug() const { return fDebug ; }
	61	virtual void SetDebug(Int_t d) { fDebug = d ; }
	62	virtual Int_t GetDataType() const { return fDataType ; }
	63	virtual void SetDataType(Int_t data ) { fDataType = data ; }
	64
a79a2424	65	virtual Int_t GetEventNumber() const {return fEventNumber ; }
	66	virtual TString GetCurrentFileName() const {return fCurrentFileName ; }
	67
1c5acb87	68	//Minimum pt setters and getters
	69	virtual Float_t GetEMCALPtMin() const { return fEMCALPtMin ; }
	70	virtual Float_t GetPHOSPtMin() const { return fPHOSPtMin ; }
	71	virtual Float_t GetCTSPtMin() const { return fCTSPtMin ; }
	72
	73	virtual void SetEMCALPtMin(Float_t pt) { fEMCALPtMin = pt ; }
	74	virtual void SetPHOSPtMin(Float_t pt) { fPHOSPtMin = pt ; }
	75	virtual void SetCTSPtMin(Float_t pt) { fCTSPtMin = pt ; }
	76
	77	//Input setters and getters
	78
	79	Bool_t IsCTSSwitchedOn() const { return fFillCTS ; }
	80	void SwitchOnCTS() {fFillCTS = kTRUE ; }
	81	void SwitchOffCTS() {fFillCTS = kFALSE ; }
	82
	83	Bool_t IsEMCALSwitchedOn() const { return fFillEMCAL ; }
	84	void SwitchOnEMCAL() {fFillEMCAL = kTRUE ; }
	85	void SwitchOffEMCAL() {fFillEMCAL = kFALSE ; }
	86
	87	Bool_t IsPHOSSwitchedOn() const { return fFillPHOS ; }
	88	void SwitchOnPHOS() {fFillPHOS = kTRUE ; }
	89	void SwitchOffPHOS() {fFillPHOS = kFALSE ; }
	90
	91	Bool_t IsEMCALCellsSwitchedOn() const { return fFillEMCALCells ; }
	92	void SwitchOnEMCALCells() {fFillEMCALCells = kTRUE ; }
	93	void SwitchOffEMCALCells() {fFillEMCALCells = kFALSE ; }
	94
	95	Bool_t IsPHOSCellsSwitchedOn() const { return fFillPHOSCells ; }
	96	void SwitchOnPHOSCells() {fFillPHOSCells = kTRUE ; }
	97	void SwitchOffPHOSCells() {fFillPHOSCells = kFALSE ; }
	98
29b2ceec	99	virtual Bool_t FillInputEvent(const Int_t iEntry, const char *currentFileName) ;
1c5acb87	100	virtual void FillInputCTS() {;}
	101	virtual void FillInputEMCAL() {;}
	102	virtual void FillInputPHOS() {;}
	103	virtual void FillInputEMCALCells() {;}
	104	virtual void FillInputPHOSCells() {;}
	105
591cc579	106	virtual TObjArray* GetAODCTS() const {return fAODCTS ;}
	107	virtual TObjArray* GetAODEMCAL() const {return fAODEMCAL ;}
	108	virtual TObjArray* GetAODPHOS() const {return fAODPHOS ;}
477d6cee	109	virtual TNamed* GetEMCALCells() const {return fEMCALCells ;}
477d6cee	110	virtual TNamed* GetPHOSCells() const {return fPHOSCells ;}
1c5acb87	111
591cc579	112	//Get MC informatio
591cc579	113	//Kinematics and galice.root available
477d6cee	114	virtual AliStack* GetStack() const ;
477d6cee	115	virtual AliHeader* GetHeader() const ;
1c5acb87	116	virtual AliGenEventHeader* GetGenEventHeader() const ;
591cc579	117	//Filtered kinematics in AOD
	118	virtual TClonesArray* GetAODMCParticles(Int_t input = 0) const ;
	119	virtual AliAODMCHeader* GetAODMCHeader(Int_t input = 0) const ;
	120
477d6cee	121	virtual AliVEvent* GetInputEvent() const {return fInputEvent;}
	122	virtual AliAODEvent* GetOutputEvent() const {return fOutputEvent;}
	123	virtual AliMCEvent* GetMC() const {return fMC;}
233e0df8	124	virtual void GetVertex(Double_t *) const {;}
233e0df8	125	virtual void GetSecondInputAODVertex(Double_t *) const {;}
8dacfd76	126	virtual Double_t GetBField() const { return 0.;}
591cc579	127
	128	virtual void Init();
	129
8dacfd76	130	virtual void SetInputEvent(AliVEvent* const input) {fInputEvent = input;}
	131	virtual void SetOutputEvent(AliAODEvent* const aod) {fOutputEvent = aod;}
	132	virtual void SetMC(AliMCEvent* const mc) {fMC = mc;}
1c5acb87	133
	134	virtual void ResetLists();
	135
ff45398a	136	virtual AliFiducialCut * GetFiducialCut() const {return fFiducialCut ;}
ff45398a	137	virtual void SetFiducialCut(AliFiducialCut * const fc) { fFiducialCut = fc ;}
29b2ceec	138
477d6cee	139	virtual void SetInputOutputMCEvent(AliVEvent* /esd/, AliAODEvent* /aod/, AliMCEvent* /mc/) {;}
591cc579	140
	141	//Methods for mixing with external input file (AOD)
	142	virtual TTree* GetSecondInputAODTree() const {return fSecondInputAODTree ; }
	143	//virtual void SetSecondInputAODTree(TTree * tree) {fSecondInputAODTree = tree ;
	144	// fSecondInputAODEvent->ReadFromTree(tree);}//Connect tree and AOD event.
	145
	146	virtual AliAODEvent* GetSecondInputAODEvent() const { return fSecondInputAODEvent ; }
	147
	148	TString GetSecondInputFileName() const {return fSecondInputFileName ; }
	149	void SetSecondInputFileName(TString name) { fSecondInputFileName = name ; }
1c5acb87	150
591cc579	151	Int_t GetSecondInputFirstEvent() const {return fSecondInputFirstEvent ; }
	152	void SetSecondInputFirstEvent(Int_t iEvent0) { fSecondInputFirstEvent = iEvent0 ; }
	153
	154	Int_t GetAODCTSNormalInputEntries() {if(!fSecondInputAODTree) { fAODCTSNormalInputEntries = fAODCTS->GetEntriesFast() ;}
	155	return fAODCTSNormalInputEntries ; }
	156	Int_t GetAODEMCALNormalInputEntries() {if(!fSecondInputAODTree) { fAODEMCALNormalInputEntries = fAODEMCAL->GetEntriesFast();}
	157	return fAODEMCALNormalInputEntries ; }
	158	Int_t GetAODPHOSNormalInputEntries() {if(!fSecondInputAODTree) { fAODPHOSNormalInputEntries = fAODPHOS->GetEntriesFast() ;}
	159	return fAODPHOSNormalInputEntries ; }
	160
	161	ULong_t GetTrackStatus() const {return fTrackStatus ; }
	162	void SetTrackStatus(ULong_t bit) { fTrackStatus = bit ; }
	163
	164	void SwitchOnStack() { fReadStack = kTRUE ; }
	165	void SwitchOffStack() { fReadStack = kFALSE ; }
	166	void SwitchOnAODMCParticles() { fReadAODMCParticles = kTRUE ; }
	167	void SwitchOffAODMCParticles() { fReadAODMCParticles = kFALSE ; }
	168	Bool_t ReadStack() const { return fReadStack ; }
	169	Bool_t ReadAODMCParticles() const { return fReadAODMCParticles ; }
	170
08a064bc	171	void SwitchOnCleanStdAOD() {fCleanOutputStdAOD = kTRUE;}
	172	void SwitchOffCleanStdAOD() {fCleanOutputStdAOD = kFALSE;}
	173
42dc8e7d	174	void SetDeltaAODFileName(TString name ) {fDeltaAODFileName = name ; }
42dc8e7d	175	TString GetDeltaAODFileName() const {return fDeltaAODFileName ; }
72d2488e	176
	177	void SetFiredTriggerClassName(TString name ) {fFiredTriggerClassName = name ; }
	178	TString GetFiredTriggerClassName() const {return fFiredTriggerClassName ; }
	179	virtual TString GetFiredTriggerClasses() {return "";}
42dc8e7d	180
0866d83a	181	//Calorimeters Geometry Methods
afabc52f	182	void SetEMCALGeometryName(TString name) { fEMCALGeoName = name ; }
afabc52f	183	TString EMCALGeometryName() const { return fEMCALGeoName ; }
4e2b43d8	184	void InitEMCALGeometry() ;
afabc52f	185	AliEMCALGeoUtils * GetEMCALGeometry() const {return fEMCALGeo;}
0866d83a	186	Bool_t IsEMCALGeoMatrixSet() {return fEMCALGeoMatrixSet; }
0866d83a	187
afabc52f	188	void SetPHOSGeometryName(TString name) { fPHOSGeoName = name ; }
afabc52f	189	TString PHOSGeometryName() const { return fPHOSGeoName ; }
4e2b43d8	190	void InitPHOSGeometry() ;
0866d83a	191	AliPHOSGeoUtils * GetPHOSGeometry() const {return fPHOSGeo;}
	192	Bool_t IsPHOSGeoMatrixSet() {return fPHOSGeoMatrixSet ; }
	193
c1ac3823	194	void AnalyzeOnlyLED() {fAnaLED = kTRUE;}
	195	void AnalyzeOnlyPhysics() {fAnaLED = kFALSE;}
	196
	197	// Bad channels
	198
	199	Bool_t IsBadChannelsRemovalSwitchedOn() const { return fRemoveBadChannels ; }
	200	void SwitchOnBadChannelsRemoval() {fRemoveBadChannels = kTRUE ; }
	201	void SwitchOffBadChannelsRemoval() {fRemoveBadChannels = kFALSE ; }
	202
d77fd06e	203	Int_t GetEMCALChannelStatus(Int_t iSM , Int_t iCol, Int_t iRow) const { return (Int_t) ((TH2I*)fEMCALBadChannelMap[iSM])->GetBinContent(iCol,iRow);}
	204	Int_t GetPHOSChannelStatus (Int_t imod, Int_t iCol, Int_t iRow) const { return (Int_t) ((TH2I*)fPHOSBadChannelMap[imod])->GetBinContent(iCol,iRow);}
	205
	206	void SetEMCALChannelStatus(Int_t iSM , Int_t iCol, Int_t iRow, Double_t c = 1) { ((TH2I*)fEMCALBadChannelMap[iSM])->SetBinContent(iCol,iRow,c);}
	207	void SetPHOSChannelStatus (Int_t imod, Int_t iCol, Int_t iRow, Double_t c = 1) { ((TH2I*)fPHOSBadChannelMap[imod])->SetBinContent(iCol,iRow,c);}
	208
c1ac3823	209	TH2I * GetEMCALChannelStatusMap(Int_t iSM) const {return (TH2I*)fEMCALBadChannelMap[iSM];}
	210	TH2I * GetPHOSChannelStatusMap(Int_t imod) const {return (TH2I*)fPHOSBadChannelMap[imod];}
	211
	212	void SetEMCALChannelStatusMap(TObjArray map) {fEMCALBadChannelMap = map;}
	213	void SetPHOSChannelStatusMap (TObjArray map) {fPHOSBadChannelMap = map;}
	214
	215	Bool_t ClusterContainsBadChannel(TString calorimeter,UShort_t* cellList, Int_t nCells);
afabc52f	216
1c5acb87	217	protected:
477d6cee	218	Int_t fEventNumber; // Event number
a79a2424	219	TString fCurrentFileName; // Current file name under analysis
1c5acb87	220	Int_t fDataType ; // Select MC:Kinematics, Data:ESD/AOD, MCData:Both
1c5acb87	221	Int_t fDebug; // Debugging level
614701c6	222	AliFiducialCut * fFiducialCut; //! Acceptance cuts
29b2ceec	223
591cc579	224	Bool_t fComparePtHardAndJetPt; // In MonteCarlo, jet events, reject fake events with wrong jet energy.
	225	Float_t fPtHardAndJetPtFactor; // Factor between ptHard and jet pT to reject/accept event.
	226
477d6cee	227	Float_t fCTSPtMin; // pT Threshold on charged particles
1c5acb87	228	Float_t fEMCALPtMin; // pT Threshold on emcal clusters
477d6cee	229	Float_t fPHOSPtMin; // pT Threshold on phos clusters
1c5acb87	230
591cc579	231	TObjArray * fAODCTS ; //! temporal referenced array with tracks
	232	TObjArray * fAODEMCAL ; //! temporal referenced array with EMCAL CaloClusters
	233	TObjArray * fAODPHOS ; //! temporal referenced array with PHOS CaloClusters
1c5acb87	234	TNamed * fEMCALCells ; //! temporal array with EMCAL CaloCells, ESD or AOD
	235	TNamed * fPHOSCells ; //! temporal array with PHOS CaloCells, ESD or AOD
	236
477d6cee	237	AliVEvent * fInputEvent; //! pointer to esd or aod input
477d6cee	238	AliAODEvent * fOutputEvent; //! pointer to aod output
1c5acb87	239	AliMCEvent * fMC; //! Monte Carlo Event Handler
	240
	241	Bool_t fFillCTS; // use data from CTS
	242	Bool_t fFillEMCAL; // use data from EMCAL
	243	Bool_t fFillPHOS; // use data from PHOS
	244	Bool_t fFillEMCALCells; // use data from EMCAL
	245	Bool_t fFillPHOSCells; // use data from PHOS
	246
591cc579	247	TTree * fSecondInputAODTree; // Tree with second input AOD, for mixing analysis.
	248	AliAODEvent* fSecondInputAODEvent; //! pointer to second input AOD event.
	249	TString fSecondInputFileName; // File with AOD data to mix with normal stream of data.
	250	Int_t fSecondInputFirstEvent; // First event to be considered in the mixing.
	251
	252	Int_t fAODCTSNormalInputEntries; // Number of entries in CTS in case of standard input, larger with mixing.
	253	Int_t fAODEMCALNormalInputEntries; // Number of entries in EMCAL in case of standard input, larger with mixing.
	254	Int_t fAODPHOSNormalInputEntries; // Number of entries in PHOS in case of standard input, larger with mixing.
	255
	256	ULong_t fTrackStatus ; // Track selection bit, select tracks refitted in TPC, ITS ...
	257	Bool_t fReadStack ; // Access kine information from stack
	258	Bool_t fReadAODMCParticles ; // Access kine information from filtered AOD MC particles
	259
08a064bc	260	Bool_t fCleanOutputStdAOD; // clean the written standard tracks and caloclusters in output AOD
42dc8e7d	261	TString fDeltaAODFileName ; // Delta AOD file name
72d2488e	262	TString fFiredTriggerClassName ; // Name of trigger event type used to do the analysis
afabc52f	263
c1ac3823	264	TString fEMCALGeoName; // Name of geometry to use for EMCAL.
	265	TString fPHOSGeoName; // Name of geometry to use for PHOS.
	266	AliEMCALGeoUtils * fEMCALGeo ; //! EMCAL geometry pointer
	267	AliPHOSGeoUtils * fPHOSGeo ; //! PHOS geometry pointer
	268	Bool_t fEMCALGeoMatrixSet; // Check if the transformation matrix is set for EMCAL
	269	Bool_t fPHOSGeoMatrixSet ; // Check if the transformation matrix is set for PHOS
	270	Bool_t fAnaLED; // Analyze LED data only.
	271	Bool_t fRemoveBadChannels; // Check the channel status provided and remove clusters with bad channels
	272	TObjArray fEMCALBadChannelMap; //! Array of histograms with map of bad channels, EMCAL
	273	TObjArray fPHOSBadChannelMap; //! Array of histograms with map of bad channels, PHOS
	274
	275	ClassDef(AliCaloTrackReader,12)
1c5acb87	276	} ;
	277
	278
	279	#endif //ALICALOTRACKREADER_H
	280
	281
	282