[u/mrichter/AliRoot.git] / PWGHF / vertexingHF / RunAnalysisAODVertexingHF.C

class AliAnalysisGrid;
class AliAnalysisAlien;

void RunAnalysisAODVertexingHF()
{
  //
  // Test macro for AliAnalysisTaskSE's for heavy-flavour candidates
  // It has the structure of a Analysis Train:
  // - in this macro, change things related to running mode
  //   and input preparation 
  // - add your task using a AddTaskXXX macro 
  //
  // A.Dainese, andrea.dainese@lnl.infn.it
  // "grid" mode added by R.Bala, bala@to.infn.it
  //


  gSystem->SetIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS  -I$ALICE_ROOT/OADB -I$ALICE_ROOT/PWGHF -I$ALICE_ROOT/PWGHF/base -I$ALICE_ROOT/PWGHF/vertexingHF -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_ROOT/PWG/FLOW/Tasks -g"); 
  //
  TString trainName = "D2H";
  TString analysisMode = "grid"; // "local", "grid", or "proof"
  TString inputMode    = "list"; // "list", "xml", or "dataset"
  Long64_t nentries=123567890,firstentry=0;
  Bool_t useParFiles=kFALSE;
  Bool_t useAlienPlugin=kTRUE;
  TString pluginmode="full";
  TString testfileslistWithPlugin="";
  Bool_t saveProofToAlien=kFALSE;
  TString proofOutdir = "";
  TString loadMacroPath="$ALICE_ROOT/PWGHF/vertexingHF/macros/";
  //TString loadMacroPath="./"; // this is normally needed for CAF
  //

  if(analysisMode=="grid") {
    // Connect to AliEn
    TGrid::Connect("alien://");
  } else if(analysisMode=="proof") {
    // Connect to the PROOF cluster
    if(inputMode!="dataset") {printf("Input mode must be dataset, for proof analysis\n"); return;}
    gEnv->SetValue("XSec.GSI.DelegProxy","2");
    TProof::Open("alicecaf");
    //TProof::Reset("alicecaf");
    if(saveProofToAlien) {
      TGrid::Connect("alien://");
      if(gGrid) {
	TString homedir = gGrid->GetHomeDirectory();
	TString workdir = homedir + trainName;
	if(!gGrid->Cd(workdir)) {
	  gGrid->Cd(homedir);
	  if(gGrid->Mkdir(workdir)) {
	    gGrid->Cd(trainName);
	    ::Info("VertexingTrain::Connect()", "Directory %s created", gGrid->Pwd());
	  }
	}	   
	gGrid->Mkdir("proof_output");
	gGrid->Cd("proof_output");
	proofOutdir = Form("alien://%s", gGrid->Pwd());
      } 
    }
  }


  // AliRoot libraries
  if(analysisMode=="local" || analysisMode=="grid") {
    TString loadLibraries="LoadLibraries.C"; loadLibraries.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(loadLibraries.Data());
    LoadLibraries(useParFiles);
  } else if (analysisMode=="proof") {
    gSystem->Load("libTree.so");
    gSystem->Load("libGeom.so");
    gSystem->Load("libPhysics.so");
    gSystem->Load("libVMC.so");    
    gSystem->Load("libMinuit.so");    
    // Enable the needed packages
    //gProof->ClearPackages();
    TString parDir="/afs/cern.ch/user/d/dainesea/code/";
    TString parFile;
    if(!useParFiles) {
      gProof->UploadPackage("AF-v4-17");
      gProof->EnablePackage("AF-v4-17");
      // --- Enable the PWGHFvertexingHF Package
      parFile="PWGHFvertexingHF.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("PWGHFvertexingHF");
    } else {
      // --- Enable the STEERBase Package
      parFile="STEERBase.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("STEERBase");
      // --- Enable the ESD Package
      parFile="ESD.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("ESD");
      // --- Enable the AOD Package
      parFile="AOD.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("AOD");
      // --- Enable the ANALYSIS Package
      parFile="ANALYSIS.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("ANALYSIS");
      // --- Enable the ANALYSISalice Package
      parFile="ANALYSISalice.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("ANALYSISalice");
      // --- Enable the CORRFW Package
      parFile="CORRFW.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("CORRFW");
      // --- Enable the PWGHFbase Package
      parFile="PWGHFbase.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("PWGHFbase");
      // --- Enable the PWGHFvertexingHF Package
      parFile="PWGHFvertexingHF.par"; parFile.Prepend(parDir.Data());
      gProof->UploadPackage(parFile.Data());
      gProof->EnablePackage("PWGHFvertexingHF");
    }
    gProof->ShowEnabledPackages(); // show a list of enabled packages
  }


  // Create Alien plugin, if requested
  if(useAlienPlugin) {  
    //    if(analysisMode!="grid") {printf("Analysis mode must be grid, to use alien plugin\n"); return;}
    AliAnalysisGrid *alienHandler = CreateAlienHandler(pluginmode,useParFiles,testfileslistWithPlugin);  
    if(!alienHandler) return;
  }


  //-------------------------------------------------------------------
  // Prepare input
  TChain *chainAOD = 0;
  TString dataset; // for proof

  if(!useAlienPlugin) {
    TString makeAODInputChain="../MakeAODInputChain.C"; makeAODInputChain.Prepend(loadMacroPath.Data());
    if(inputMode=="list") {
      // Local files
      gROOT->LoadMacro(makeAODInputChain.Data());
      chainAOD = MakeAODInputChain();// with this it reads ./AliAOD.root and ./AliAOD.VertexingHF.root
      //chainAOD = MakeAODInputChain("alien:///alice/cern.ch/user/r/rbala/newtrain/out_lhc08x/180100/",1,1);
      printf("ENTRIES %d\n",chainAOD->GetEntries());
    } else if(inputMode=="xml") {
      // xml
      gROOT->LoadMacro(makeAODInputChain.Data());
      chainAOD = MakeAODInputChain("collection_aod.xml","collection_aodHF.xml");
    } else if(inputMode=="dataset") {
      // CAF dataset
      //gProof->ShowDataSets();
      dataset="/ITS/dainesea/AODVertexingHF_LHC08x_180100";
    }
  }

  // Create the analysis manager
  AliAnalysisManager *mgr  = new AliAnalysisManager("My Manager","My Manager");
  mgr->SetDebugLevel(10);
  // Connect plug-in to the analysis manager
  if(useAlienPlugin) mgr->SetGridHandler(alienHandler);

  // Input
  AliAODInputHandler *inputHandler = new AliAODInputHandler("handler","handler for D2H");
  if(analysisMode=="proof" ) {
    inputHandler->AddFriend("./AliAOD.VertexingHF.root");
    //inputHandler->AddFriend("deltas/AliAOD.VertexingHF.root");
    if(saveProofToAlien) mgr->SetSpecialOutputLocation(proofOutdir);
  }
  mgr->SetInputEventHandler(inputHandler);
  //-------------------------------------------------------------------

  
  //-------------------------------------------------------------------
  // Analysis tasks (wagons of the train)   
  //
  // First add the task for the PID response setting
  gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");
  AliAnalysisTaskSE *setupTask = AddTaskPIDResponse(kFALSE,kTRUE);

  TString taskName;
  
  ////// ADD THE FULL D2H TRAIN
  /*taskName="../AddD2HTrain.C"; taskName.Prepend(loadMacroPath.Data());
  gROOT->LoadMacro(taskName.Data());
  Bool_t readMC=kFALSE;
  AddD2HTrain(readMC);//,1,0,0,0,0,0,0,0,0,0,0);*/
  
  ////// OR ADD INDIVIDUAL TASKS
  
  
  /*  taskName="AddTaskCompareHF.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSECompareHF *cmpTask = AddTaskCompareHF();
    */  
    taskName="AddTaskD0Mass.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSED0Mass *d0massTask = AddTaskD0Mass();
    AliAnalysisTaskSED0Mass *d0massLikeSignTask = AddTaskD0Mass(1); 
    /*
    taskName="AddTaskDplus.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSEDplus *dplusTask = AddTaskDplus();

    taskName="AddTaskDs.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSEDs *dsTask = AddTaskDs();
    
    //taskName="AddTaskSelectHF.C"; taskName.Prepend(loadMacroPath.Data());
    //gROOT->LoadMacro(taskName.Data());
    //AliAnalysisTaskSESelectHF *seleTask = AddTaskSelectHF();
    
    taskName="AddTaskBkgLikeSignD0.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliAnalysisTaskSEBkgLikeSignD0 *lsD0Task = AddTaskBkgLikeSignD0();
    
    taskName="AddTaskCFMultiVarMultiStep.C"; taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    AliCFHeavyFlavourTaskMultiVarMultiStep *cfmvmsTask = AddTaskCFMultiVarMultiStep();
    

    taskName="AddTaskSECharmFraction.C"; 
    taskName.Prepend(loadMacroPath.Data());
    gROOT->LoadMacro(taskName.Data());
    Int_t switchMC[5]={0,0,0,0,0};
    Int_t ppPbPb=1;// 0 for pp, 1 for PbPb, used to siwtch on/off the removal of daughters from the primary vertex
    AliAnalysisTaskSECharmFraction *cFractTask = AddTaskSECharmFraction("standard",switchMC,readMC,kTRUE,kFALSE,"D0toKpiCharmFractCuts.root","c",ppPbPb);
    // arguments: filename,switchMC,readmc,usepid,likesign,cutfilename,containerprefix

    
    // attach a private task (not committed)
    // (the files MyTask.h MyTask.cxx AddMyTask.C have to be declared in plugin
    // configuration, see below)
    
    if(analysisMode.Data()=="proof") {
    gProof->LoadMacro("MyTask.cxx++g");
    } else {
    gROOT->LoadMacro("MyTask.cxx++g");
    }
    gROOT->LoadMacro("AddMyTask.C");
    MyTask *myTask = AddMyTask();
    
    
    if(analysisMode.Data()=="proof") {
    gProof->LoadMacro("AliDStarJets.cxx++g");
    } else {
    gROOT->LoadMacro("AliDStarJets.cxx++g");
    }
    gROOT->LoadMacro("AddTaskDStarJets.C");
    AliDStarJets *myTask = AddTaskDStarJets();
  */
  //-------------------------------------------------------------------
  
  //
  // Run the analysis
  //    
  if(chainAOD) printf("CHAIN HAS %d ENTRIES\n",(Int_t)chainAOD->GetEntries());
  
  if(!mgr->InitAnalysis()) return;
  mgr->PrintStatus();
  if(analysisMode=="grid" && !useAlienPlugin) analysisMode="local";
  if(analysisMode!="proof") {
    mgr->StartAnalysis(analysisMode.Data(),chainAOD,nentries,firstentry);
  } else {
    // proof
    mgr->StartAnalysis(analysisMode.Data(),dataset.Data(),nentries,firstentry);
  }
  
  return;
}
//_____________________________________________________________________________
//
AliAnalysisGrid* CreateAlienHandler(TString pluginmode="test",Bool_t useParFiles=kFALSE, TString testfileslistWithPlugin="")
{
  // Check if user has a valid token, otherwise make one. This has limitations.
  // One can always follow the standard procedure of calling alien-token-init then
  //   source /tmp/gclient_env_$UID in the current shell.
   AliAnalysisAlien *plugin = new AliAnalysisAlien();
   // Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
   plugin->SetRunMode(pluginmode.Data());
   plugin->SetUser();
   // Set versions of used packages
   plugin->SetAPIVersion("V1.1x");
   plugin->SetROOTVersion();
   plugin->SetAliROOTVersion();
   plugin->SetNtestFiles(1);
   gROOT->LoadMacro("$ALICE_ROOT/PWGHF/vertexingHF/AddGoodRuns.C");

   // Declare input data to be processed.
   //************************************************
   // Set data file list to test on local mode
   //************************************************  
   plugin->SetFileForTestMode(testfileslistWithPlugin.Data());

   //************************************************
   // Set data search pattern for DATA
   //************************************************  
   //Method 1: To create automatically xml through plugin  
   plugin->SetGridDataDir("/alice/data/2010/LHC10d"); // specify LHC period
   plugin->SetDataPattern("pass2/AOD018/*AliAOD.root"); // specify reco pass and AOD set
   plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
   // OR plugin->SetFriendChainName("deltas/AliAOD.VertexingHF.root");
   // Adds only the good runs from the Monalisa Run Condition Table
   // More than one period can be added but the period name has to be removed from GridDataDir (to be tested)
   Int_t totruns=0;
   //totruns += AddGoodRuns(plugin,"LHC10b"); // specify LHC period
   //totruns += AddGoodRuns(plugin,"LHC10c"); // specify LHC period
   totruns += AddGoodRuns(plugin,"LHC10d"); // specify LHC period
   plugin->SetNrunsPerMaster(totruns);

   // Method 2: Declare existing data files (e.g xml collections)

   //plugin->AddDataFile("/alice/cern.ch/user/r/rbala/000168068_000170593.xml");
   //  plugin->SetDataPattern("*AliAOD.root");
   //  plugin->SetFriendChainName("./AliAOD.VertexingHF.root"); 

   //************************************************
   // Set data search pattern for MONTECARLO
   //************************************************
   /* 
   plugin->SetGridDataDir("/alice/sim/LHC10d3"); // specify MC sample
   plugin->SetDataPattern("AOD005/*AliAOD.root"); // specify AOD set
   plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
   // OR plugin->SetFriendChainName("deltas/AliAOD.VertexingHF.root");
   // Adds only the good runs from the Monalisa Run Condition Table 
   // More than one period can be added!
   Int_t totruns=0;
   totruns += AddGoodRuns(plugin,"LHC10b","LHC10d3"); // specify LHC period for anchor runs; and the name of the MC production
   //totruns += AddGoodRuns(plugin,"LHC10c","LHC10f7"); // specify LHC period for anchor runs;  and the name of the MC production
   //totruns += AddGoodRuns(plugin,"LHC10d","LHC10f7"); // specify LHC period for anchor runs;  and the name of the MC production
   plugin->SetNrunsPerMaster(totruns);
   */
   //
   // Define alien work directory where all files will be copied. Relative to alien $HOME.
   plugin->SetGridWorkingDir("myHFanalysis");
   // Name of executable
   plugin->SetExecutable("myHFanalysis.sh");
   // Declare alien output directory. Relative to working directory.
   plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
   // Declare the analysis source files names separated by blancs. To be compiled runtime
   // using ACLiC on the worker nodes.
   //plugin->SetAnalysisSource("AliDStarJets.cxx");
   // Declare all libraries (other than the default ones for the framework. These will be
   // loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
   plugin->SetAdditionalLibs("libPWGflowBase.so libPWGflowTasks.so libPWGHFbase.so libPWGHFvertexingHF.so");
   // use par files
   if(useParFiles) {
     plugin->EnablePackage("STEERBase.par");
     plugin->EnablePackage("ESD.par");
     plugin->EnablePackage("AOD.par");
     plugin->EnablePackage("ANALYSIS.par");
     plugin->EnablePackage("OADB.par");
     plugin->EnablePackage("ANALYSISalice.par");
     plugin->EnablePackage("CORRFW.par");
     plugin->EnablePackage("PWGHFbase.par");
     plugin->EnablePackage("PWGHFvertexingHF.par");
   }
   plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS  -I$ALICE_ROOT/OADB -I$ALICE_ROOT/PWGHF -I$ALICE_ROOT/PWGHF/base -I$ALICE_ROOT/PWGHF/vertexingHF -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_ROOT/PWG/FLOW/Tasks -g");

   plugin->SetDefaultOutputs(kTRUE);
   // merging via jdl
   plugin->SetMergeViaJDL(kTRUE);
   plugin->SetOneStageMerging(kFALSE);
   plugin->SetMaxMergeStages(2);

   // Optionally set a name for the generated analysis macro (default MyAnalysis.C)
   plugin->SetAnalysisMacro("AnalysisHF.C");
   // Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
   // Optionally modify the name of the generated JDL (default analysis.jdl)
   plugin->SetJDLName("TaskHF.jdl");

   return plugin;
}
Commit	Line	Data
8931206f	1	class AliAnalysisGrid;
54d54d1a	2	class AliAnalysisAlien;
8931206f	3
	4	void RunAnalysisAODVertexingHF()
	5	{
	6	//
	7	// Test macro for AliAnalysisTaskSE's for heavy-flavour candidates
	8	// It has the structure of a Analysis Train:
	9	// - in this macro, change things related to running mode
	10	// and input preparation
	11	// - add your task using a AddTaskXXX macro
	12	//
	13	// A.Dainese, andrea.dainese@lnl.infn.it
	14	// "grid" mode added by R.Bala, bala@to.infn.it
	15	//
	16
	17
968144ac	18	gSystem->SetIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/OADB -I$ALICE_ROOT/PWGHF -I$ALICE_ROOT/PWGHF/base -I$ALICE_ROOT/PWGHF/vertexingHF -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_ROOT/PWG/FLOW/Tasks -g");
8931206f	19	//
	20	TString trainName = "D2H";
	21	TString analysisMode = "grid"; // "local", "grid", or "proof"
	22	TString inputMode = "list"; // "list", "xml", or "dataset"
	23	Long64_t nentries=123567890,firstentry=0;
9124d874	24	Bool_t useParFiles=kFALSE;
8931206f	25	Bool_t useAlienPlugin=kTRUE;
7dc1b6b2	26	TString pluginmode="full";
4637c72d	27	TString testfileslistWithPlugin="";
8931206f	28	Bool_t saveProofToAlien=kFALSE;
8931206f	29	TString proofOutdir = "";
0694cdc8	30	TString loadMacroPath="$ALICE_ROOT/PWGHF/vertexingHF/macros/";
8931206f	31	//TString loadMacroPath="./"; // this is normally needed for CAF
	32	//
	33
	34	if(analysisMode=="grid") {
	35	// Connect to AliEn
	36	TGrid::Connect("alien://");
	37	} else if(analysisMode=="proof") {
	38	// Connect to the PROOF cluster
	39	if(inputMode!="dataset") {printf("Input mode must be dataset, for proof analysis\n"); return;}
	40	gEnv->SetValue("XSec.GSI.DelegProxy","2");
	41	TProof::Open("alicecaf");
	42	//TProof::Reset("alicecaf");
	43	if(saveProofToAlien) {
	44	TGrid::Connect("alien://");
	45	if(gGrid) {
	46	TString homedir = gGrid->GetHomeDirectory();
	47	TString workdir = homedir + trainName;
	48	if(!gGrid->Cd(workdir)) {
	49	gGrid->Cd(homedir);
	50	if(gGrid->Mkdir(workdir)) {
	51	gGrid->Cd(trainName);
	52	::Info("VertexingTrain::Connect()", "Directory %s created", gGrid->Pwd());
	53	}
	54	}
	55	gGrid->Mkdir("proof_output");
	56	gGrid->Cd("proof_output");
	57	proofOutdir = Form("alien://%s", gGrid->Pwd());
	58	}
	59	}
	60	}
	61
	62
	63	// AliRoot libraries
	64	if(analysisMode=="local" \|\| analysisMode=="grid") {
	65	TString loadLibraries="LoadLibraries.C"; loadLibraries.Prepend(loadMacroPath.Data());
	66	gROOT->LoadMacro(loadLibraries.Data());
	67	LoadLibraries(useParFiles);
	68	} else if (analysisMode=="proof") {
	69	gSystem->Load("libTree.so");
	70	gSystem->Load("libGeom.so");
	71	gSystem->Load("libPhysics.so");
	72	gSystem->Load("libVMC.so");
	73	gSystem->Load("libMinuit.so");
	74	// Enable the needed packages
	75	//gProof->ClearPackages();
	76	TString parDir="/afs/cern.ch/user/d/dainesea/code/";
	77	TString parFile;
	78	if(!useParFiles) {
	79	gProof->UploadPackage("AF-v4-17");
	80	gProof->EnablePackage("AF-v4-17");
0694cdc8	81	// --- Enable the PWGHFvertexingHF Package
0694cdc8	82	parFile="PWGHFvertexingHF.par"; parFile.Prepend(parDir.Data());
8931206f	83	gProof->UploadPackage(parFile.Data());
0694cdc8	84	gProof->EnablePackage("PWGHFvertexingHF");
8931206f	85	} else {
	86	// --- Enable the STEERBase Package
	87	parFile="STEERBase.par"; parFile.Prepend(parDir.Data());
	88	gProof->UploadPackage(parFile.Data());
	89	gProof->EnablePackage("STEERBase");
	90	// --- Enable the ESD Package
	91	parFile="ESD.par"; parFile.Prepend(parDir.Data());
	92	gProof->UploadPackage(parFile.Data());
	93	gProof->EnablePackage("ESD");
	94	// --- Enable the AOD Package
	95	parFile="AOD.par"; parFile.Prepend(parDir.Data());
	96	gProof->UploadPackage(parFile.Data());
	97	gProof->EnablePackage("AOD");
	98	// --- Enable the ANALYSIS Package
	99	parFile="ANALYSIS.par"; parFile.Prepend(parDir.Data());
	100	gProof->UploadPackage(parFile.Data());
	101	gProof->EnablePackage("ANALYSIS");
	102	// --- Enable the ANALYSISalice Package
	103	parFile="ANALYSISalice.par"; parFile.Prepend(parDir.Data());
	104	gProof->UploadPackage(parFile.Data());
	105	gProof->EnablePackage("ANALYSISalice");
	106	// --- Enable the CORRFW Package
	107	parFile="CORRFW.par"; parFile.Prepend(parDir.Data());
	108	gProof->UploadPackage(parFile.Data());
	109	gProof->EnablePackage("CORRFW");
0694cdc8	110	// --- Enable the PWGHFbase Package
0694cdc8	111	parFile="PWGHFbase.par"; parFile.Prepend(parDir.Data());
8931206f	112	gProof->UploadPackage(parFile.Data());
0694cdc8	113	gProof->EnablePackage("PWGHFbase");
	114	// --- Enable the PWGHFvertexingHF Package
	115	parFile="PWGHFvertexingHF.par"; parFile.Prepend(parDir.Data());
8931206f	116	gProof->UploadPackage(parFile.Data());
0694cdc8	117	gProof->EnablePackage("PWGHFvertexingHF");
8931206f	118	}
	119	gProof->ShowEnabledPackages(); // show a list of enabled packages
	120	}
	121
	122
	123	// Create Alien plugin, if requested
	124	if(useAlienPlugin) {
4637c72d	125	// if(analysisMode!="grid") {printf("Analysis mode must be grid, to use alien plugin\n"); return;}
4637c72d	126	AliAnalysisGrid *alienHandler = CreateAlienHandler(pluginmode,useParFiles,testfileslistWithPlugin);
8931206f	127	if(!alienHandler) return;
	128	}
	129
	130
	131	//-------------------------------------------------------------------
	132	// Prepare input
	133	TChain *chainAOD = 0;
	134	TString dataset; // for proof
	135
	136	if(!useAlienPlugin) {
cc3209fb	137	TString makeAODInputChain="../MakeAODInputChain.C"; makeAODInputChain.Prepend(loadMacroPath.Data());
8931206f	138	if(inputMode=="list") {
	139	// Local files
	140	gROOT->LoadMacro(makeAODInputChain.Data());
	141	chainAOD = MakeAODInputChain();// with this it reads ./AliAOD.root and ./AliAOD.VertexingHF.root
	142	//chainAOD = MakeAODInputChain("alien:///alice/cern.ch/user/r/rbala/newtrain/out_lhc08x/180100/",1,1);
	143	printf("ENTRIES %d\n",chainAOD->GetEntries());
	144	} else if(inputMode=="xml") {
	145	// xml
	146	gROOT->LoadMacro(makeAODInputChain.Data());
	147	chainAOD = MakeAODInputChain("collection_aod.xml","collection_aodHF.xml");
	148	} else if(inputMode=="dataset") {
	149	// CAF dataset
	150	//gProof->ShowDataSets();
	151	dataset="/ITS/dainesea/AODVertexingHF_LHC08x_180100";
	152	}
	153	}
	154
	155	// Create the analysis manager
	156	AliAnalysisManager *mgr = new AliAnalysisManager("My Manager","My Manager");
	157	mgr->SetDebugLevel(10);
	158	// Connect plug-in to the analysis manager
	159	if(useAlienPlugin) mgr->SetGridHandler(alienHandler);
	160
	161	// Input
5b37c6e5	162	AliAODInputHandler *inputHandler = new AliAODInputHandler("handler","handler for D2H");
8931206f	163	if(analysisMode=="proof" ) {
efb0a9e5	164	inputHandler->AddFriend("./AliAOD.VertexingHF.root");
efb0a9e5	165	//inputHandler->AddFriend("deltas/AliAOD.VertexingHF.root");
8931206f	166	if(saveProofToAlien) mgr->SetSpecialOutputLocation(proofOutdir);
	167	}
	168	mgr->SetInputEventHandler(inputHandler);
	169	//-------------------------------------------------------------------
	170
	171
	172	//-------------------------------------------------------------------
	173	// Analysis tasks (wagons of the train)
	174	//
b79bfc3e	175	// First add the task for the PID response setting
	176	gROOT->LoadMacro("$ALICE_ROOT/ANALYSIS/macros/AddTaskPIDResponse.C");
	177	AliAnalysisTaskSE *setupTask = AddTaskPIDResponse(kFALSE,kTRUE);
	178
8931206f	179	TString taskName;
	180
	181	////// ADD THE FULL D2H TRAIN
cc3209fb	182	/*taskName="../AddD2HTrain.C"; taskName.Prepend(loadMacroPath.Data());
8931206f	183	gROOT->LoadMacro(taskName.Data());
8931206f	184	Bool_t readMC=kFALSE;
efb0a9e5	185	AddD2HTrain(readMC);//,1,0,0,0,0,0,0,0,0,0,0);*/
8931206f	186
	187	////// OR ADD INDIVIDUAL TASKS
	188
efb0a9e5	189
efb0a9e5	190	/* taskName="AddTaskCompareHF.C"; taskName.Prepend(loadMacroPath.Data());
8931206f	191	gROOT->LoadMacro(taskName.Data());
8931206f	192	AliAnalysisTaskSECompareHF *cmpTask = AddTaskCompareHF();
c1179c57	193	*/
8931206f	194	taskName="AddTaskD0Mass.C"; taskName.Prepend(loadMacroPath.Data());
	195	gROOT->LoadMacro(taskName.Data());
	196	AliAnalysisTaskSED0Mass *d0massTask = AddTaskD0Mass();
	197	AliAnalysisTaskSED0Mass *d0massLikeSignTask = AddTaskD0Mass(1);
efb0a9e5	198	/*
8931206f	199	taskName="AddTaskDplus.C"; taskName.Prepend(loadMacroPath.Data());
	200	gROOT->LoadMacro(taskName.Data());
	201	AliAnalysisTaskSEDplus *dplusTask = AddTaskDplus();
c1179c57	202
8931206f	203	taskName="AddTaskDs.C"; taskName.Prepend(loadMacroPath.Data());
	204	gROOT->LoadMacro(taskName.Data());
	205	AliAnalysisTaskSEDs *dsTask = AddTaskDs();
	206
	207	//taskName="AddTaskSelectHF.C"; taskName.Prepend(loadMacroPath.Data());
	208	//gROOT->LoadMacro(taskName.Data());
	209	//AliAnalysisTaskSESelectHF *seleTask = AddTaskSelectHF();
	210
	211	taskName="AddTaskBkgLikeSignD0.C"; taskName.Prepend(loadMacroPath.Data());
	212	gROOT->LoadMacro(taskName.Data());
	213	AliAnalysisTaskSEBkgLikeSignD0 *lsD0Task = AddTaskBkgLikeSignD0();
	214
8931206f	215	taskName="AddTaskCFMultiVarMultiStep.C"; taskName.Prepend(loadMacroPath.Data());
	216	gROOT->LoadMacro(taskName.Data());
	217	AliCFHeavyFlavourTaskMultiVarMultiStep *cfmvmsTask = AddTaskCFMultiVarMultiStep();
	218
e047b348	219
	220	taskName="AddTaskSECharmFraction.C";
	221	taskName.Prepend(loadMacroPath.Data());
8931206f	222	gROOT->LoadMacro(taskName.Data());
e047b348	223	Int_t switchMC[5]={0,0,0,0,0};
cc3209fb	224	Int_t ppPbPb=1;// 0 for pp, 1 for PbPb, used to siwtch on/off the removal of daughters from the primary vertex
cc3209fb	225	AliAnalysisTaskSECharmFraction *cFractTask = AddTaskSECharmFraction("standard",switchMC,readMC,kTRUE,kFALSE,"D0toKpiCharmFractCuts.root","c",ppPbPb);
e047b348	226	// arguments: filename,switchMC,readmc,usepid,likesign,cutfilename,containerprefix
cc3209fb	227
8931206f	228
	229	// attach a private task (not committed)
	230	// (the files MyTask.h MyTask.cxx AddMyTask.C have to be declared in plugin
	231	// configuration, see below)
	232
	233	if(analysisMode.Data()=="proof") {
	234	gProof->LoadMacro("MyTask.cxx++g");
	235	} else {
	236	gROOT->LoadMacro("MyTask.cxx++g");
	237	}
	238	gROOT->LoadMacro("AddMyTask.C");
	239	MyTask *myTask = AddMyTask();
	240
	241
	242	if(analysisMode.Data()=="proof") {
	243	gProof->LoadMacro("AliDStarJets.cxx++g");
	244	} else {
	245	gROOT->LoadMacro("AliDStarJets.cxx++g");
	246	}
	247	gROOT->LoadMacro("AddTaskDStarJets.C");
	248	AliDStarJets *myTask = AddTaskDStarJets();
	249	*/
	250	//-------------------------------------------------------------------
	251
	252	//
	253	// Run the analysis
	254	//
	255	if(chainAOD) printf("CHAIN HAS %d ENTRIES\n",(Int_t)chainAOD->GetEntries());
	256
	257	if(!mgr->InitAnalysis()) return;
	258	mgr->PrintStatus();
	259	if(analysisMode=="grid" && !useAlienPlugin) analysisMode="local";
	260	if(analysisMode!="proof") {
	261	mgr->StartAnalysis(analysisMode.Data(),chainAOD,nentries,firstentry);
	262	} else {
	263	// proof
	264	mgr->StartAnalysis(analysisMode.Data(),dataset.Data(),nentries,firstentry);
	265	}
	266
	267	return;
	268	}
	269	//_____________________________________________________________________________
	270	//
4637c72d	271	AliAnalysisGrid* CreateAlienHandler(TString pluginmode="test",Bool_t useParFiles=kFALSE, TString testfileslistWithPlugin="")
8931206f	272	{
	273	// Check if user has a valid token, otherwise make one. This has limitations.
	274	// One can always follow the standard procedure of calling alien-token-init then
	275	// source /tmp/gclient_env_$UID in the current shell.
8931206f	276	AliAnalysisAlien *plugin = new AliAnalysisAlien();
	277	// Set the run mode (can be "full", "test", "offline", "submit" or "terminate")
	278	plugin->SetRunMode(pluginmode.Data());
a9e59aee	279	plugin->SetUser();
8931206f	280	// Set versions of used packages
8931206f	281	plugin->SetAPIVersion("V1.1x");
a9e59aee	282	plugin->SetROOTVersion();
a9e59aee	283	plugin->SetAliROOTVersion();
c1179c57	284	plugin->SetNtestFiles(1);
0694cdc8	285	gROOT->LoadMacro("$ALICE_ROOT/PWGHF/vertexingHF/AddGoodRuns.C");
9be57b17	286
8931206f	287	// Declare input data to be processed.
4637c72d	288	//************************************************
	289	// Set data file list to test on local mode
	290	//************************************************
	291	plugin->SetFileForTestMode(testfileslistWithPlugin.Data());
	292
b9015c51	293	//************************************************
b9015c51	294	// Set data search pattern for DATA
c1179c57	295	//************************************************
c1179c57	296	//Method 1: To create automatically xml through plugin
9124d874	297	plugin->SetGridDataDir("/alice/data/2010/LHC10d"); // specify LHC period
9124d874	298	plugin->SetDataPattern("pass2/AOD018/*AliAOD.root"); // specify reco pass and AOD set
b2b62321	299	plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
b9015c51	300	// OR plugin->SetFriendChainName("deltas/AliAOD.VertexingHF.root");
46627015	301	// Adds only the good runs from the Monalisa Run Condition Table
b9015c51	302	// More than one period can be added but the period name has to be removed from GridDataDir (to be tested)
b2b62321	303	Int_t totruns=0;
9124d874	304	//totruns += AddGoodRuns(plugin,"LHC10b"); // specify LHC period
b9015c51	305	//totruns += AddGoodRuns(plugin,"LHC10c"); // specify LHC period
9124d874	306	totruns += AddGoodRuns(plugin,"LHC10d"); // specify LHC period
b2b62321	307	plugin->SetNrunsPerMaster(totruns);
c1179c57	308
	309	// Method 2: Declare existing data files (e.g xml collections)
	310
	311	//plugin->AddDataFile("/alice/cern.ch/user/r/rbala/000168068_000170593.xml");
	312	// plugin->SetDataPattern("*AliAOD.root");
	313	// plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
	314
b9015c51	315	//************************************************
	316	// Set data search pattern for MONTECARLO
	317	//************************************************
9124d874	318	/*
b2b62321	319	plugin->SetGridDataDir("/alice/sim/LHC10d3"); // specify MC sample
b2b62321	320	plugin->SetDataPattern("AOD005/*AliAOD.root"); // specify AOD set
b9015c51	321	plugin->SetFriendChainName("./AliAOD.VertexingHF.root");
	322	// OR plugin->SetFriendChainName("deltas/AliAOD.VertexingHF.root");
	323	// Adds only the good runs from the Monalisa Run Condition Table
	324	// More than one period can be added!
	325	Int_t totruns=0;
b2b62321	326	totruns += AddGoodRuns(plugin,"LHC10b","LHC10d3"); // specify LHC period for anchor runs; and the name of the MC production
	327	//totruns += AddGoodRuns(plugin,"LHC10c","LHC10f7"); // specify LHC period for anchor runs; and the name of the MC production
	328	//totruns += AddGoodRuns(plugin,"LHC10d","LHC10f7"); // specify LHC period for anchor runs; and the name of the MC production
b9015c51	329	plugin->SetNrunsPerMaster(totruns);
9124d874	330	*/
b9015c51	331	//
8931206f	332	// Define alien work directory where all files will be copied. Relative to alien $HOME.
8931206f	333	plugin->SetGridWorkingDir("myHFanalysis");
c1179c57	334	// Name of executable
efc42c41	335	plugin->SetExecutable("myHFanalysis.sh");
8931206f	336	// Declare alien output directory. Relative to working directory.
	337	plugin->SetGridOutputDir("output"); // In this case will be $HOME/work/output
	338	// Declare the analysis source files names separated by blancs. To be compiled runtime
	339	// using ACLiC on the worker nodes.
	340	//plugin->SetAnalysisSource("AliDStarJets.cxx");
	341	// Declare all libraries (other than the default ones for the framework. These will be
	342	// loaded by the generated analysis macro. Add all extra files (task .cxx/.h) here.
be47521d	343	plugin->SetAdditionalLibs("libPWGflowBase.so libPWGflowTasks.so libPWGHFbase.so libPWGHFvertexingHF.so");
8931206f	344	// use par files
	345	if(useParFiles) {
	346	plugin->EnablePackage("STEERBase.par");
	347	plugin->EnablePackage("ESD.par");
	348	plugin->EnablePackage("AOD.par");
	349	plugin->EnablePackage("ANALYSIS.par");
1b575730	350	plugin->EnablePackage("OADB.par");
8931206f	351	plugin->EnablePackage("ANALYSISalice.par");
8931206f	352	plugin->EnablePackage("CORRFW.par");
0694cdc8	353	plugin->EnablePackage("PWGHFbase.par");
0694cdc8	354	plugin->EnablePackage("PWGHFvertexingHF.par");
8931206f	355	}
be47521d	356	plugin->AddIncludePath("-I. -I$ROOTSYS/include -I$ALICE_ROOT -I$ALICE_ROOT/include -I$ALICE_ROOT/ITS -I$ALICE_ROOT/TPC -I$ALICE_ROOT/CONTAINERS -I$ALICE_ROOT/STEER/STEER -I$ALICE_ROOT/STEER/STEERBase -I$ALICE_ROOT/STEER/ESD -I$ALICE_ROOT/STEER/AOD -I$ALICE_ROOT/TRD -I$ALICE_ROOT/macros -I$ALICE_ROOT/ANALYSIS -I$ALICE_ROOT/OADB -I$ALICE_ROOT/PWGHF -I$ALICE_ROOT/PWGHF/base -I$ALICE_ROOT/PWGHF/vertexingHF -I$ALICE_ROOT/PWG/FLOW/Base -I$ALICE_ROOT/PWG/FLOW/Tasks -g");
a9e59aee	357
8931206f	358	plugin->SetDefaultOutputs(kTRUE);
9a36a6cc	359	// merging via jdl
	360	plugin->SetMergeViaJDL(kTRUE);
	361	plugin->SetOneStageMerging(kFALSE);
	362	plugin->SetMaxMergeStages(2);
	363
8931206f	364	// Optionally set a name for the generated analysis macro (default MyAnalysis.C)
	365	plugin->SetAnalysisMacro("AnalysisHF.C");
	366	// Optionally set maximum number of input files/subjob (default 100, put 0 to ignore)
8931206f	367	// Optionally modify the name of the generated JDL (default analysis.jdl)
8931206f	368	plugin->SetJDLName("TaskHF.jdl");
8931206f	369
	370	return plugin;
	371	}