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892226be | 1 | /************************************************************************** |
2 | * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. * | |
3 | * * | |
4 | * Author: The ALICE Off-line Project. * | |
5 | * Contributors are mentioned in the code where appropriate. * | |
6 | * * | |
7 | * Permission to use, copy, modify and distribute this software and its * | |
8 | * documentation strictly for non-commercial purposes is hereby granted * | |
9 | * without fee, provided that the above copyright notice appears in all * | |
10 | * copies and that both the copyright notice and this permission notice * | |
11 | * appear in the supporting documentation. The authors make no claims * | |
12 | * about the suitability of this software for any purpose. It is * | |
13 | * provided "as is" without express or implied warranty. * | |
14 | **************************************************************************/ | |
15 | ||
16 | ||
17 | /////////////////////////////////////////////////////////////////////////////// | |
18 | // // | |
19 | // Class providing the calculation of derived quantities (mean,rms,fits,...) // | |
20 | // of calibration entries // | |
21 | /* | |
22 | ||
23 | ||
24 | */ | |
25 | //////////////////////////////////////////////////////////////////////////////// | |
26 | ||
27 | #include <TMath.h> | |
28 | #include <TVectorT.h> | |
29 | #include <TObjArray.h> | |
30 | #include <TGraph.h> | |
7390f655 | 31 | #include <TFile.h> |
32 | #include <TDirectory.h> | |
892226be | 33 | |
34 | #include <AliDCSSensorArray.h> | |
35 | #include <AliDCSSensor.h> | |
36 | #include "AliTPCcalibDB.h" | |
37 | #include "AliTPCCalPad.h" | |
38 | #include "AliTPCCalROC.h" | |
39 | #include "AliTPCROC.h" | |
40 | #include "AliTPCmapper.h" | |
41 | #include "AliTPCParam.h" | |
6e7d7dc4 | 42 | #include "AliTPCCalibRaw.h" |
892226be | 43 | |
44 | #include "AliTPCcalibDButil.h" | |
2cb269df | 45 | #include "AliTPCPreprocessorOnline.h" |
892226be | 46 | |
47 | ClassImp(AliTPCcalibDButil) | |
48 | AliTPCcalibDButil::AliTPCcalibDButil() : | |
49 | TObject(), | |
50 | fCalibDB(AliTPCcalibDB::Instance()), | |
51 | fPadNoise(0x0), | |
52 | fPedestals(0x0), | |
53 | fPulserTmean(0x0), | |
54 | fPulserTrms(0x0), | |
55 | fPulserQmean(0x0), | |
56 | fPulserOutlier(new AliTPCCalPad("PulserOutliers","PulserOutliers")), | |
57 | fCETmean(0x0), | |
58 | fCETrms(0x0), | |
59 | fCEQmean(0x0), | |
60 | fALTROMasked(0x0), | |
6e7d7dc4 | 61 | fCalibRaw(0x0), |
7390f655 | 62 | fRefPadNoise(0x0), |
63 | fRefPedestals(0x0), | |
64 | fRefPulserTmean(0x0), | |
65 | fRefPulserTrms(0x0), | |
66 | fRefPulserQmean(0x0), | |
67 | fRefPulserOutlier(new AliTPCCalPad("RefPulserOutliers","RefPulserOutliers")), | |
68 | fRefCETmean(0x0), | |
69 | fRefCETrms(0x0), | |
70 | fRefCEQmean(0x0), | |
71 | fRefALTROMasked(0x0), | |
72 | fRefCalibRaw(0x0), | |
892226be | 73 | fGoofieArray(0x0), |
74 | fMapper(new AliTPCmapper(0x0)), | |
75 | fNpulserOutliers(-1), | |
7390f655 | 76 | fIrocTimeOffset(0), |
892226be | 77 | fCETmaxLimitAbs(1.5), |
78 | fPulTmaxLimitAbs(1.5), | |
79 | fPulQmaxLimitAbs(5), | |
80 | fPulQminLimit(11) | |
81 | { | |
82 | // | |
83 | // Default ctor | |
84 | // | |
85 | } | |
86 | //_____________________________________________________________________________________ | |
87 | AliTPCcalibDButil::~AliTPCcalibDButil() | |
88 | { | |
89 | // | |
90 | // dtor | |
91 | // | |
92 | delete fPulserOutlier; | |
7390f655 | 93 | delete fRefPulserOutlier; |
892226be | 94 | delete fMapper; |
7390f655 | 95 | if (fRefPadNoise) delete fRefPadNoise; |
96 | if (fRefPedestals) delete fRefPedestals; | |
97 | if (fRefPulserTmean) delete fRefPulserTmean; | |
98 | if (fRefPulserTrms) delete fRefPulserTrms; | |
99 | if (fRefPulserQmean) delete fRefPulserQmean; | |
100 | if (fRefCETmean) delete fRefCETmean; | |
101 | if (fRefCETrms) delete fRefCETrms; | |
102 | if (fRefCEQmean) delete fRefCEQmean; | |
103 | if (fRefALTROMasked) delete fRefALTROMasked; | |
104 | if (fRefCalibRaw) delete fRefCalibRaw; | |
105 | ||
892226be | 106 | } |
107 | //_____________________________________________________________________________________ | |
108 | void AliTPCcalibDButil::UpdateFromCalibDB() | |
109 | { | |
110 | // | |
111 | // Update pointers from calibDB | |
112 | // | |
113 | fPadNoise=fCalibDB->GetPadNoise(); | |
114 | fPedestals=fCalibDB->GetPedestals(); | |
115 | fPulserTmean=fCalibDB->GetPulserTmean(); | |
116 | fPulserTrms=fCalibDB->GetPulserTrms(); | |
117 | fPulserQmean=fCalibDB->GetPulserQmean(); | |
118 | fCETmean=fCalibDB->GetCETmean(); | |
119 | fCETrms=fCalibDB->GetCETrms(); | |
120 | fCEQmean=fCalibDB->GetCEQmean(); | |
121 | fALTROMasked=fCalibDB->GetALTROMasked(); | |
122 | fGoofieArray=fCalibDB->GetGoofieSensors(fCalibDB->GetRun()); | |
6e7d7dc4 | 123 | fCalibRaw=fCalibDB->GetCalibRaw(); |
892226be | 124 | UpdatePulserOutlierMap(); |
125 | } | |
126 | //_____________________________________________________________________________________ | |
7390f655 | 127 | void AliTPCcalibDButil::ProcessCEdata(const char* fitFormula, TVectorD &fitResultsA, TVectorD &fitResultsC, |
2cb269df | 128 | Int_t &noutliersCE, Double_t & chi2A, Double_t &chi2C, AliTPCCalPad *outCE) |
892226be | 129 | { |
130 | // | |
131 | // Process the CE data for this run | |
132 | // the return TVectorD arrays contian the results of the fit | |
133 | // noutliersCE contains the number of pads marked as outliers, | |
134 | // not including masked and edge pads | |
135 | // | |
136 | ||
137 | //retrieve CE and ALTRO data | |
138 | if (!fCETmean){ | |
139 | TString fitString(fitFormula); | |
140 | fitString.ReplaceAll("++","#"); | |
141 | Int_t ndim=fitString.CountChar('#')+2; | |
142 | fitResultsA.ResizeTo(ndim); | |
143 | fitResultsC.ResizeTo(ndim); | |
144 | fitResultsA.Zero(); | |
145 | fitResultsC.Zero(); | |
146 | noutliersCE=-1; | |
147 | return; | |
148 | } | |
149 | noutliersCE=0; | |
150 | //create outlier map | |
7390f655 | 151 | AliTPCCalPad *out=0; |
152 | if (outCE) out=outCE; | |
153 | else out=new AliTPCCalPad("outCE","outCE"); | |
892226be | 154 | AliTPCCalROC *rocMasked=0x0; |
155 | //loop over all channels | |
156 | for (UInt_t iroc=0;iroc<fCETmean->kNsec;++iroc){ | |
157 | AliTPCCalROC *rocData=fCETmean->GetCalROC(iroc); | |
158 | if (fALTROMasked) rocMasked=fALTROMasked->GetCalROC(iroc); | |
7390f655 | 159 | AliTPCCalROC *rocOut=out->GetCalROC(iroc); |
6e7d7dc4 | 160 | if (!rocData) { |
161 | noutliersCE+=AliTPCROC::Instance()->GetNChannels(iroc); | |
7390f655 | 162 | rocOut->Add(1.); |
6e7d7dc4 | 163 | continue; |
164 | } | |
892226be | 165 | //add time offset to IROCs |
166 | if (iroc<AliTPCROC::Instance()->GetNInnerSector()) | |
167 | rocData->Add(fIrocTimeOffset); | |
168 | //select outliers | |
169 | UInt_t nrows=rocData->GetNrows(); | |
170 | for (UInt_t irow=0;irow<nrows;++irow){ | |
171 | UInt_t npads=rocData->GetNPads(irow); | |
172 | for (UInt_t ipad=0;ipad<npads;++ipad){ | |
7390f655 | 173 | rocOut->SetValue(irow,ipad,0); |
892226be | 174 | //exclude masked pads |
175 | if (rocMasked && rocMasked->GetValue(irow,ipad)) { | |
7390f655 | 176 | rocOut->SetValue(irow,ipad,1); |
892226be | 177 | continue; |
178 | } | |
732e90a8 | 179 | //exclude first two rows in IROC and last two rows in OROC |
180 | if (iroc<36){ | |
181 | if (irow<2) rocOut->SetValue(irow,ipad,1); | |
182 | } else { | |
183 | if (irow>nrows-3) rocOut->SetValue(irow,ipad,1); | |
184 | } | |
892226be | 185 | //exclude edge pads |
7390f655 | 186 | if (ipad==0||ipad==npads-1) rocOut->SetValue(irow,ipad,1); |
187 | Float_t valTmean=rocData->GetValue(irow,ipad); | |
892226be | 188 | //exclude values that are exactly 0 |
189 | if (valTmean==0) { | |
7390f655 | 190 | rocOut->SetValue(irow,ipad,1); |
892226be | 191 | ++noutliersCE; |
192 | } | |
193 | // exclude channels with too large variations | |
194 | if (TMath::Abs(valTmean)>fCETmaxLimitAbs) { | |
7390f655 | 195 | rocOut->SetValue(irow,ipad,1); |
892226be | 196 | ++noutliersCE; |
197 | } | |
198 | } | |
199 | } | |
200 | } | |
201 | //perform fit | |
202 | TMatrixD dummy; | |
2cb269df | 203 | Float_t chi2Af,chi2Cf; |
204 | fCETmean->GlobalSidesFit(out,fitFormula,fitResultsA,fitResultsC,dummy,dummy,chi2Af,chi2Cf); | |
205 | chi2A=chi2Af; | |
206 | chi2C=chi2Cf; | |
7390f655 | 207 | if (!outCE) delete out; |
892226be | 208 | } |
209 | //_____________________________________________________________________________________ | |
210 | void AliTPCcalibDButil::ProcessCEgraphs(TVectorD &vecTEntries, TVectorD &vecTMean, TVectorD &vecTRMS, TVectorD &vecTMedian, | |
211 | TVectorD &vecQEntries, TVectorD &vecQMean, TVectorD &vecQRMS, TVectorD &vecQMedian, | |
212 | Float_t &driftTimeA, Float_t &driftTimeC ) | |
213 | { | |
214 | // | |
215 | // Calculate statistical information from the CE graphs for drift time and charge | |
216 | // | |
217 | ||
218 | //reset arrays | |
219 | vecTEntries.ResizeTo(72); | |
220 | vecTMean.ResizeTo(72); | |
221 | vecTRMS.ResizeTo(72); | |
222 | vecTMedian.ResizeTo(72); | |
223 | vecQEntries.ResizeTo(72); | |
224 | vecQMean.ResizeTo(72); | |
225 | vecQRMS.ResizeTo(72); | |
226 | vecQMedian.ResizeTo(72); | |
227 | vecTEntries.Zero(); | |
228 | vecTMean.Zero(); | |
229 | vecTRMS.Zero(); | |
230 | vecTMedian.Zero(); | |
231 | vecQEntries.Zero(); | |
232 | vecQMean.Zero(); | |
233 | vecQRMS.Zero(); | |
234 | vecQMedian.Zero(); | |
235 | driftTimeA=0; | |
236 | driftTimeC=0; | |
237 | TObjArray *arrT=fCalibDB->GetCErocTtime(); | |
238 | TObjArray *arrQ=fCalibDB->GetCErocQtime(); | |
239 | if (arrT){ | |
240 | for (Int_t isec=0;isec<74;++isec){ | |
241 | TGraph *gr=(TGraph*)arrT->At(isec); | |
242 | if (!gr) continue; | |
243 | TVectorD values; | |
244 | Int_t npoints = gr->GetN(); | |
245 | values.ResizeTo(npoints); | |
246 | Int_t nused =0; | |
6e7d7dc4 | 247 | //skip first points, theres always some problems with finding the CE position |
248 | for (Int_t ipoint=4; ipoint<npoints; ipoint++){ | |
249 | if (gr->GetY()[ipoint]>500 && gr->GetY()[ipoint]<1020 ){ | |
892226be | 250 | values[nused]=gr->GetY()[ipoint]; |
251 | nused++; | |
252 | } | |
253 | } | |
254 | // | |
255 | if (isec<72) vecTEntries[isec]= nused; | |
256 | if (nused>1){ | |
257 | if (isec<72){ | |
258 | vecTMedian[isec] = TMath::Median(nused,values.GetMatrixArray()); | |
259 | vecTMean[isec] = TMath::Mean(nused,values.GetMatrixArray()); | |
260 | vecTRMS[isec] = TMath::RMS(nused,values.GetMatrixArray()); | |
261 | } else if (isec==72){ | |
262 | driftTimeA=TMath::Median(nused,values.GetMatrixArray()); | |
263 | } else if (isec==73){ | |
264 | driftTimeC=TMath::Median(nused,values.GetMatrixArray()); | |
265 | } | |
266 | } | |
267 | } | |
268 | } | |
269 | if (arrQ){ | |
6e7d7dc4 | 270 | for (Int_t isec=0;isec<arrQ->GetEntriesFast();++isec){ |
892226be | 271 | TGraph *gr=(TGraph*)arrQ->At(isec); |
272 | if (!gr) continue; | |
273 | TVectorD values; | |
274 | Int_t npoints = gr->GetN(); | |
275 | values.ResizeTo(npoints); | |
276 | Int_t nused =0; | |
277 | for (Int_t ipoint=0; ipoint<npoints; ipoint++){ | |
278 | if (gr->GetY()[ipoint]>500 && gr->GetY()[ipoint]<1000 ){ | |
279 | values[nused]=gr->GetY()[ipoint]; | |
280 | nused++; | |
281 | } | |
282 | } | |
283 | // | |
6e7d7dc4 | 284 | vecQEntries[isec]= nused; |
892226be | 285 | if (nused>1){ |
286 | vecQMedian[isec] = TMath::Median(nused,values.GetMatrixArray()); | |
287 | vecQMean[isec] = TMath::Mean(nused,values.GetMatrixArray()); | |
288 | vecQRMS[isec] = TMath::RMS(nused,values.GetMatrixArray()); | |
289 | } | |
290 | } | |
291 | } | |
292 | } | |
293 | ||
294 | //_____________________________________________________________________________________ | |
295 | void AliTPCcalibDButil::ProcessNoiseData(TVectorD &vNoiseMean, TVectorD &vNoiseMeanSenRegions, | |
296 | TVectorD &vNoiseRMS, TVectorD &vNoiseRMSSenRegions, | |
297 | Int_t &nonMaskedZero) | |
298 | { | |
299 | // | |
300 | // process noise data | |
301 | // vNoiseMean/RMS contains the Mean/RMS noise of the complete TPC [0], IROCs only [1], | |
302 | // OROCs small pads [2] and OROCs large pads [3] | |
303 | // vNoiseMean/RMSsenRegions constains the same information, but only for the sensitive regions (edge pads, corners, IROC spot) | |
304 | // nonMaskedZero contains the number of pads which show zero noise and were not masked. This might indicate an error | |
305 | // | |
306 | ||
307 | //set proper size and reset | |
308 | const UInt_t infoSize=4; | |
309 | vNoiseMean.ResizeTo(infoSize); | |
310 | vNoiseMeanSenRegions.ResizeTo(infoSize); | |
311 | vNoiseRMS.ResizeTo(infoSize); | |
312 | vNoiseRMSSenRegions.ResizeTo(infoSize); | |
313 | vNoiseMean.Zero(); | |
314 | vNoiseMeanSenRegions.Zero(); | |
315 | vNoiseRMS.Zero(); | |
316 | vNoiseRMSSenRegions.Zero(); | |
317 | nonMaskedZero=0; | |
318 | //counters | |
319 | TVectorD c(infoSize); | |
320 | TVectorD cs(infoSize); | |
321 | //tpc parameters | |
322 | AliTPCParam par; | |
323 | par.Update(); | |
324 | //retrieve noise and ALTRO data | |
325 | if (!fPadNoise) return; | |
326 | AliTPCCalROC *rocMasked=0x0; | |
327 | //create IROC, OROC1, OROC2 and sensitive region masks | |
328 | for (UInt_t isec=0;isec<AliTPCCalPad::kNsec;++isec){ | |
329 | AliTPCCalROC *noiseROC=fPadNoise->GetCalROC(isec); | |
330 | if (fALTROMasked) rocMasked=fALTROMasked->GetCalROC(isec); | |
331 | UInt_t nrows=noiseROC->GetNrows(); | |
332 | for (UInt_t irow=0;irow<nrows;++irow){ | |
333 | UInt_t npads=noiseROC->GetNPads(irow); | |
334 | for (UInt_t ipad=0;ipad<npads;++ipad){ | |
335 | //don't use masked channels; | |
336 | if (rocMasked && rocMasked->GetValue(irow,ipad)) continue; | |
337 | Float_t noiseVal=noiseROC->GetValue(irow,ipad); | |
338 | //check if noise==0 | |
339 | if (noiseVal==0) { | |
340 | ++nonMaskedZero; | |
341 | continue; | |
342 | } | |
343 | //check for nan | |
344 | if ( !(noiseVal<10000000) ){ | |
345 | printf ("Warning: nan detected in (sec,row,pad - val): %02d,%02d,%03d - %.1f\n",isec,irow,ipad,noiseVal); | |
346 | continue; | |
347 | } | |
348 | Int_t cpad=(Int_t)ipad-(Int_t)npads/2; | |
349 | Int_t masksen=1; // sensitive pards are not masked (0) | |
350 | if (ipad<2||npads-ipad-1<2) masksen=0; //don't mask edge pads (sensitive) | |
351 | if (isec<AliTPCROC::Instance()->GetNInnerSector()){ | |
352 | //IROCs | |
353 | if (irow>19&&irow<46){ | |
354 | if (TMath::Abs(cpad)<7) masksen=0; //IROC spot | |
355 | } | |
356 | Int_t type=1; | |
357 | vNoiseMean[type]+=noiseVal; | |
358 | vNoiseRMS[type]+=noiseVal*noiseVal; | |
359 | ++c[type]; | |
360 | if (!masksen){ | |
361 | vNoiseMeanSenRegions[type]+=noiseVal; | |
362 | vNoiseRMSSenRegions[type]+=noiseVal*noiseVal; | |
363 | ++cs[type]; | |
364 | } | |
365 | } else { | |
366 | //OROCs | |
367 | //define sensive regions | |
368 | if ((nrows-irow-1)<3) masksen=0; //last three rows in OROCs are sensitive | |
369 | if ( irow>75 ){ | |
370 | Int_t padEdge=(Int_t)TMath::Min(ipad,npads-ipad); | |
371 | if (padEdge<((((Int_t)irow-76)/4+1))*2) masksen=0; //OROC outer corners are sensitive | |
372 | } | |
373 | if ((Int_t)irow<par.GetNRowUp1()){ | |
374 | //OROC1 | |
375 | Int_t type=2; | |
376 | vNoiseMean[type]+=noiseVal; | |
377 | vNoiseRMS[type]+=noiseVal*noiseVal; | |
378 | ++c[type]; | |
379 | if (!masksen){ | |
380 | vNoiseMeanSenRegions[type]+=noiseVal; | |
381 | vNoiseRMSSenRegions[type]+=noiseVal*noiseVal; | |
382 | ++cs[type]; | |
383 | } | |
384 | }else{ | |
385 | //OROC2 | |
386 | Int_t type=3; | |
387 | vNoiseMean[type]+=noiseVal; | |
388 | vNoiseRMS[type]+=noiseVal*noiseVal; | |
389 | ++c[type]; | |
390 | if (!masksen){ | |
391 | vNoiseMeanSenRegions[type]+=noiseVal; | |
392 | vNoiseRMSSenRegions[type]+=noiseVal*noiseVal; | |
393 | ++cs[type]; | |
394 | } | |
395 | } | |
396 | } | |
397 | //whole tpc | |
398 | Int_t type=0; | |
399 | vNoiseMean[type]+=noiseVal; | |
400 | vNoiseRMS[type]+=noiseVal*noiseVal; | |
401 | ++c[type]; | |
402 | if (!masksen){ | |
403 | vNoiseMeanSenRegions[type]+=noiseVal; | |
404 | vNoiseRMSSenRegions[type]+=noiseVal*noiseVal; | |
405 | ++cs[type]; | |
406 | } | |
407 | }//end loop pads | |
408 | }//end loop rows | |
409 | }//end loop sectors (rocs) | |
410 | ||
411 | //calculate mean and RMS | |
412 | const Double_t verySmall=0.0000000001; | |
413 | for (UInt_t i=0;i<infoSize;++i){ | |
414 | Double_t mean=0; | |
415 | Double_t rms=0; | |
416 | Double_t meanSen=0; | |
417 | Double_t rmsSen=0; | |
418 | ||
419 | if (c[i]>verySmall){ | |
420 | // printf ("i: %d - m: %.3f, c: %.0f, r: %.3f\n",i,vNoiseMean[i],c[i],vNoiseRMS[i]); | |
421 | mean=vNoiseMean[i]/c[i]; | |
422 | rms=vNoiseRMS[i]; | |
423 | rms=TMath::Sqrt(TMath::Abs(rms/c[i]-mean*mean)); | |
424 | } | |
425 | vNoiseMean[i]=mean; | |
426 | vNoiseRMS[i]=rms; | |
427 | ||
428 | if (cs[i]>verySmall){ | |
429 | meanSen=vNoiseMeanSenRegions[i]/cs[i]; | |
430 | rmsSen=vNoiseRMSSenRegions[i]; | |
431 | rmsSen=TMath::Sqrt(TMath::Abs(rmsSen/cs[i]-meanSen*meanSen)); | |
432 | } | |
433 | vNoiseMeanSenRegions[i]=meanSen; | |
434 | vNoiseRMSSenRegions[i]=rmsSen; | |
435 | } | |
436 | } | |
437 | ||
438 | //_____________________________________________________________________________________ | |
439 | void AliTPCcalibDButil::ProcessPulser(TVectorD &vMeanTime) | |
440 | { | |
441 | // | |
442 | // Process the Pulser information | |
443 | // vMeanTime: pulser mean time position in IROC-A, IROC-C, OROC-A, OROC-C | |
444 | // | |
445 | ||
446 | const UInt_t infoSize=4; | |
447 | //reset counters to error number | |
448 | vMeanTime.ResizeTo(infoSize); | |
449 | vMeanTime.Zero(); | |
450 | //counter | |
451 | TVectorD c(infoSize); | |
452 | //retrieve pulser and ALTRO data | |
453 | if (!fPulserTmean) return; | |
454 | // | |
455 | //get Outliers | |
456 | AliTPCCalROC *rocOut=0x0; | |
457 | for (UInt_t isec=0;isec<AliTPCCalPad::kNsec;++isec){ | |
458 | AliTPCCalROC *tmeanROC=fPulserTmean->GetCalROC(isec); | |
459 | if (!tmeanROC) continue; | |
460 | rocOut=fPulserOutlier->GetCalROC(isec); | |
461 | UInt_t nchannels=tmeanROC->GetNchannels(); | |
462 | for (UInt_t ichannel=0;ichannel<nchannels;++ichannel){ | |
463 | if (rocOut && rocOut->GetValue(ichannel)) continue; | |
464 | Float_t val=tmeanROC->GetValue(ichannel); | |
465 | Int_t type=isec/18; | |
466 | vMeanTime[type]+=val; | |
467 | ++c[type]; | |
468 | } | |
469 | } | |
470 | //calculate mean | |
471 | for (UInt_t itype=0; itype<infoSize; ++itype){ | |
472 | if (c[itype]>0) vMeanTime[itype]/=c[itype]; | |
473 | else vMeanTime[itype]=0; | |
474 | } | |
475 | } | |
476 | //_____________________________________________________________________________________ | |
477 | void AliTPCcalibDButil::ProcessALTROConfig(Int_t &nMasked) | |
478 | { | |
479 | // | |
480 | // Get Values from ALTRO configuration data | |
481 | // | |
482 | nMasked=-1; | |
483 | if (!fALTROMasked) return; | |
484 | nMasked=0; | |
485 | for (Int_t isec=0;isec<fALTROMasked->kNsec; ++isec){ | |
486 | AliTPCCalROC *rocMasked=fALTROMasked->GetCalROC(isec); | |
487 | for (UInt_t ichannel=0; ichannel<rocMasked->GetNchannels();++ichannel){ | |
488 | if (rocMasked->GetValue(ichannel)) ++nMasked; | |
489 | } | |
490 | } | |
491 | } | |
492 | //_____________________________________________________________________________________ | |
493 | void AliTPCcalibDButil::ProcessGoofie(TVectorD & vecEntries, TVectorD & vecMedian, TVectorD &vecMean, TVectorD &vecRMS) | |
494 | { | |
495 | // | |
496 | // Proces Goofie values, return statistical information of the currently set goofieArray | |
497 | // The meaning of the entries are given below | |
498 | /* | |
499 | 1 TPC_ANODE_I_A00_STAT | |
500 | 2 TPC_DVM_CO2 | |
501 | 3 TPC_DVM_DriftVelocity | |
502 | 4 TPC_DVM_FCageHV | |
503 | 5 TPC_DVM_GainFar | |
504 | 6 TPC_DVM_GainNear | |
505 | 7 TPC_DVM_N2 | |
506 | 8 TPC_DVM_NumberOfSparks | |
507 | 9 TPC_DVM_PeakAreaFar | |
508 | 10 TPC_DVM_PeakAreaNear | |
509 | 11 TPC_DVM_PeakPosFar | |
510 | 12 TPC_DVM_PeakPosNear | |
511 | 13 TPC_DVM_PickupHV | |
512 | 14 TPC_DVM_Pressure | |
513 | 15 TPC_DVM_T1_Over_P | |
514 | 16 TPC_DVM_T2_Over_P | |
515 | 17 TPC_DVM_T_Over_P | |
516 | 18 TPC_DVM_TemperatureS1 | |
517 | */ | |
518 | if (!fGoofieArray){ | |
519 | Int_t nsensors=19; | |
520 | vecEntries.ResizeTo(nsensors); | |
521 | vecMedian.ResizeTo(nsensors); | |
522 | vecMean.ResizeTo(nsensors); | |
523 | vecRMS.ResizeTo(nsensors); | |
524 | vecEntries.Zero(); | |
525 | vecMedian.Zero(); | |
526 | vecMean.Zero(); | |
527 | vecRMS.Zero(); | |
528 | return; | |
529 | } | |
530 | Double_t kEpsilon=0.0000000001; | |
531 | Double_t kBig=100000000000.; | |
532 | Int_t nsensors = fGoofieArray->NumSensors(); | |
533 | vecEntries.ResizeTo(nsensors); | |
534 | vecMedian.ResizeTo(nsensors); | |
535 | vecMean.ResizeTo(nsensors); | |
536 | vecRMS.ResizeTo(nsensors); | |
537 | TVectorF values; | |
538 | for (Int_t isensor=0; isensor<fGoofieArray->NumSensors();isensor++){ | |
539 | AliDCSSensor *gsensor = fGoofieArray->GetSensor(isensor); | |
540 | if (gsensor && gsensor->GetGraph()){ | |
541 | Int_t npoints = gsensor->GetGraph()->GetN(); | |
542 | // filter zeroes | |
543 | values.ResizeTo(npoints); | |
544 | Int_t nused =0; | |
545 | for (Int_t ipoint=0; ipoint<npoints; ipoint++){ | |
546 | if (TMath::Abs(gsensor->GetGraph()->GetY()[ipoint])>kEpsilon && | |
547 | TMath::Abs(gsensor->GetGraph()->GetY()[ipoint])<kBig ){ | |
548 | values[nused]=gsensor->GetGraph()->GetY()[ipoint]; | |
549 | nused++; | |
550 | } | |
551 | } | |
552 | // | |
553 | vecEntries[isensor]= nused; | |
554 | if (nused>1){ | |
555 | vecMedian[isensor] = TMath::Median(nused,values.GetMatrixArray()); | |
556 | vecMean[isensor] = TMath::Mean(nused,values.GetMatrixArray()); | |
557 | vecRMS[isensor] = TMath::RMS(nused,values.GetMatrixArray()); | |
558 | } | |
559 | } | |
560 | } | |
561 | } | |
7390f655 | 562 | //_____________________________________________________________________________________ |
563 | void AliTPCcalibDButil::ProcessPedestalVariations(TVectorF &pedestalDeviations) | |
564 | { | |
565 | // | |
566 | // check the variations of the pedestal data to the reference pedestal data | |
567 | // thresholds are 0.5, 1.0, 1.5 and 2 timebins respectively. | |
568 | // | |
569 | const Int_t npar=4; | |
570 | TVectorF vThres(npar); //thresholds | |
571 | Int_t nActive=0; //number of active channels | |
572 | ||
573 | //reset and set thresholds | |
574 | pedestalDeviations.ResizeTo(npar); | |
575 | for (Int_t i=0;i<npar;++i){ | |
576 | pedestalDeviations.GetMatrixArray()[i]=0; | |
577 | vThres.GetMatrixArray()[i]=(i+1)*.5; | |
578 | } | |
579 | //check all needed data is available | |
580 | if (!fRefPedestals || !fPedestals || !fALTROMasked || !fRefALTROMasked) return; | |
581 | //loop over all channels | |
582 | for (UInt_t isec=0;isec<AliTPCCalPad::kNsec;++isec){ | |
583 | AliTPCCalROC *pROC=fPedestals->GetCalROC(isec); | |
584 | AliTPCCalROC *pRefROC=fRefPedestals->GetCalROC(isec); | |
585 | AliTPCCalROC *mROC=fALTROMasked->GetCalROC(isec); | |
586 | AliTPCCalROC *mRefROC=fRefALTROMasked->GetCalROC(isec); | |
587 | UInt_t nrows=mROC->GetNrows(); | |
588 | for (UInt_t irow=0;irow<nrows;++irow){ | |
589 | UInt_t npads=mROC->GetNPads(irow); | |
590 | for (UInt_t ipad=0;ipad<npads;++ipad){ | |
591 | //don't use masked channels; | |
592 | if (mROC ->GetValue(irow,ipad)) continue; | |
593 | if (mRefROC->GetValue(irow,ipad)) continue; | |
594 | Float_t deviation=TMath::Abs(pROC->GetValue(irow,ipad)-pRefROC->GetValue(irow,ipad)); | |
595 | for (Int_t i=0;i<npar;++i){ | |
596 | if (deviation>vThres[i]) | |
597 | ++pedestalDeviations.GetMatrixArray()[i]; | |
598 | } | |
599 | ++nActive; | |
600 | }//end ipad | |
601 | }//ind irow | |
602 | }//end isec | |
603 | if (nActive>0){ | |
604 | for (Int_t i=0;i<npar;++i){ | |
605 | pedestalDeviations.GetMatrixArray()[i]/=nActive; | |
606 | } | |
607 | } | |
608 | } | |
609 | //_____________________________________________________________________________________ | |
610 | void AliTPCcalibDButil::ProcessNoiseVariations(TVectorF &noiseDeviations) | |
611 | { | |
612 | // | |
613 | // check the variations of the noise data to the reference noise data | |
614 | // thresholds are 5, 10, 15 and 20 percent respectively. | |
615 | // | |
616 | const Int_t npar=4; | |
617 | TVectorF vThres(npar); //thresholds | |
618 | Int_t nActive=0; //number of active channels | |
619 | ||
620 | //reset and set thresholds | |
621 | noiseDeviations.ResizeTo(npar); | |
622 | for (Int_t i=0;i<npar;++i){ | |
623 | noiseDeviations.GetMatrixArray()[i]=0; | |
624 | vThres.GetMatrixArray()[i]=(i+1)*.05; | |
625 | } | |
626 | //check all needed data is available | |
627 | if (!fRefPadNoise || !fPadNoise || !fALTROMasked || !fRefALTROMasked) return; | |
628 | //loop over all channels | |
629 | for (UInt_t isec=0;isec<AliTPCCalPad::kNsec;++isec){ | |
630 | AliTPCCalROC *nROC=fPadNoise->GetCalROC(isec); | |
631 | AliTPCCalROC *nRefROC=fRefPadNoise->GetCalROC(isec); | |
632 | AliTPCCalROC *mROC=fALTROMasked->GetCalROC(isec); | |
633 | AliTPCCalROC *mRefROC=fRefALTROMasked->GetCalROC(isec); | |
634 | UInt_t nrows=mROC->GetNrows(); | |
635 | for (UInt_t irow=0;irow<nrows;++irow){ | |
636 | UInt_t npads=mROC->GetNPads(irow); | |
637 | for (UInt_t ipad=0;ipad<npads;++ipad){ | |
638 | //don't use masked channels; | |
639 | if (mROC ->GetValue(irow,ipad)) continue; | |
640 | if (mRefROC->GetValue(irow,ipad)) continue; | |
641 | Float_t deviation=(nROC->GetValue(irow,ipad)/nRefROC->GetValue(irow,ipad))-1; | |
642 | for (Int_t i=0;i<npar;++i){ | |
643 | if (deviation>vThres[i]) | |
644 | ++noiseDeviations.GetMatrixArray()[i]; | |
645 | } | |
646 | ++nActive; | |
647 | }//end ipad | |
648 | }//ind irow | |
649 | }//end isec | |
650 | if (nActive>0){ | |
651 | for (Int_t i=0;i<npar;++i){ | |
652 | noiseDeviations.GetMatrixArray()[i]/=nActive; | |
653 | } | |
654 | } | |
655 | } | |
656 | //_____________________________________________________________________________________ | |
657 | void AliTPCcalibDButil::ProcessPulserVariations(TVectorF &pulserQdeviations, Float_t &varQMean, | |
658 | Int_t &npadsOutOneTB, Int_t &npadsOffAdd) | |
659 | { | |
660 | // | |
661 | // check the variations of the pulserQmean data to the reference pulserQmean data: pulserQdeviations | |
662 | // thresholds are .5, 1, 5 and 10 percent respectively. | |
663 | // | |
664 | // | |
665 | const Int_t npar=4; | |
666 | TVectorF vThres(npar); //thresholds | |
667 | Int_t nActive=0; //number of active channels | |
668 | ||
669 | //reset and set thresholds | |
670 | pulserQdeviations.ResizeTo(npar); | |
671 | for (Int_t i=0;i<npar;++i){ | |
672 | pulserQdeviations.GetMatrixArray()[i]=0; | |
673 | } | |
674 | npadsOutOneTB=0; | |
675 | npadsOffAdd=0; | |
676 | varQMean=0; | |
677 | vThres.GetMatrixArray()[0]=.005; | |
678 | vThres.GetMatrixArray()[1]=.01; | |
679 | vThres.GetMatrixArray()[2]=.05; | |
680 | vThres.GetMatrixArray()[3]=.1; | |
681 | //check all needed data is available | |
682 | if (!fRefPulserTmean || !fPulserTmean || !fPulserQmean || !fRefPulserQmean || !fALTROMasked || !fRefALTROMasked) return; | |
683 | // | |
684 | UpdateRefPulserOutlierMap(); | |
685 | //loop over all channels | |
732e90a8 | 686 | for (UInt_t isec=0;isec<AliTPCCalPad::kNsec;++isec){ |
7390f655 | 687 | AliTPCCalROC *pqROC=fPulserQmean->GetCalROC(isec); |
688 | AliTPCCalROC *pqRefROC=fRefPulserQmean->GetCalROC(isec); | |
689 | AliTPCCalROC *ptROC=fPulserTmean->GetCalROC(isec); | |
732e90a8 | 690 | // AliTPCCalROC *ptRefROC=fRefPulserTmean->GetCalROC(isec); |
7390f655 | 691 | AliTPCCalROC *mROC=fALTROMasked->GetCalROC(isec); |
692 | AliTPCCalROC *mRefROC=fRefALTROMasked->GetCalROC(isec); | |
693 | AliTPCCalROC *oROC=fPulserOutlier->GetCalROC(isec); | |
694 | Float_t pt_mean=ptROC->GetMean(oROC); | |
695 | UInt_t nrows=mROC->GetNrows(); | |
696 | for (UInt_t irow=0;irow<nrows;++irow){ | |
697 | UInt_t npads=mROC->GetNPads(irow); | |
698 | for (UInt_t ipad=0;ipad<npads;++ipad){ | |
699 | //don't use masked channels; | |
700 | if (mROC ->GetValue(irow,ipad)) continue; | |
701 | if (mRefROC->GetValue(irow,ipad)) continue; | |
702 | //don't user edge pads | |
703 | if (ipad==0||ipad==npads-1) continue; | |
704 | //data | |
705 | Float_t pq=pqROC->GetValue(irow,ipad); | |
706 | Float_t pqRef=pqRefROC->GetValue(irow,ipad); | |
707 | Float_t pt=ptROC->GetValue(irow,ipad); | |
708 | // Float_t ptRef=ptRefROC->GetValue(irow,ipad); | |
709 | //comparisons q | |
710 | Float_t deviation=TMath::Abs(pq/pqRef-1); | |
711 | for (Int_t i=0;i<npar;++i){ | |
712 | if (deviation>vThres[i]) | |
713 | ++pulserQdeviations.GetMatrixArray()[i]; | |
714 | } | |
715 | if (pqRef>11&&pq<11) ++npadsOffAdd; | |
716 | varQMean+=pq-pqRef; | |
717 | //comparisons t | |
718 | if (TMath::Abs(pt-pt_mean)>1) ++npadsOutOneTB; | |
719 | ++nActive; | |
720 | }//end ipad | |
721 | }//ind irow | |
722 | }//end isec | |
723 | if (nActive>0){ | |
724 | for (Int_t i=0;i<npar;++i){ | |
725 | pulserQdeviations.GetMatrixArray()[i]/=nActive; | |
726 | varQMean/=nActive; | |
727 | } | |
728 | } | |
729 | } | |
892226be | 730 | //_____________________________________________________________________________________ |
731 | void AliTPCcalibDButil::UpdatePulserOutlierMap() | |
7390f655 | 732 | { |
733 | // | |
734 | // | |
735 | // | |
736 | PulserOutlierMap(fPulserOutlier,fPulserTmean, fPulserQmean); | |
737 | } | |
738 | //_____________________________________________________________________________________ | |
739 | void AliTPCcalibDButil::UpdateRefPulserOutlierMap() | |
740 | { | |
741 | // | |
742 | // | |
743 | // | |
744 | PulserOutlierMap(fRefPulserOutlier,fRefPulserTmean, fRefPulserQmean); | |
745 | } | |
746 | //_____________________________________________________________________________________ | |
747 | void AliTPCcalibDButil::PulserOutlierMap(AliTPCCalPad *pulOut, const AliTPCCalPad *pulT, const AliTPCCalPad *pulQ) | |
892226be | 748 | { |
749 | // | |
750 | // Create a map that contains outliers from the Pulser calibration data. | |
751 | // The outliers include masked channels, edge pads and pads with | |
752 | // too large timing and charge variations. | |
7390f655 | 753 | // fNpulserOutliers is the number of outliers in the Pulser calibration data. |
892226be | 754 | // those do not contain masked and edge pads |
755 | // | |
7390f655 | 756 | if (!pulT||!pulQ) { |
892226be | 757 | //reset map |
7390f655 | 758 | pulOut->Multiply(0.); |
892226be | 759 | fNpulserOutliers=-1; |
760 | return; | |
761 | } | |
762 | AliTPCCalROC *rocMasked=0x0; | |
763 | fNpulserOutliers=0; | |
764 | ||
765 | //Create Outlier Map | |
766 | for (UInt_t isec=0;isec<AliTPCCalPad::kNsec;++isec){ | |
7390f655 | 767 | AliTPCCalROC *tmeanROC=pulT->GetCalROC(isec); |
768 | AliTPCCalROC *qmeanROC=pulQ->GetCalROC(isec); | |
769 | AliTPCCalROC *outROC=pulOut->GetCalROC(isec); | |
892226be | 770 | if (!tmeanROC||!qmeanROC) { |
771 | //reset outliers in this ROC | |
772 | outROC->Multiply(0.); | |
773 | continue; | |
774 | } | |
775 | if (fALTROMasked) rocMasked=fALTROMasked->GetCalROC(isec); | |
776 | // Double_t dummy=0; | |
777 | // Float_t qmedian=qmeanROC->GetLTM(&dummy,.5); | |
778 | // Float_t tmedian=tmeanROC->GetLTM(&dummy,.5); | |
779 | UInt_t nrows=tmeanROC->GetNrows(); | |
780 | for (UInt_t irow=0;irow<nrows;++irow){ | |
781 | UInt_t npads=tmeanROC->GetNPads(irow); | |
782 | for (UInt_t ipad=0;ipad<npads;++ipad){ | |
783 | Int_t outlier=0,masked=0; | |
784 | Float_t q=qmeanROC->GetValue(irow,ipad); | |
785 | Float_t t=tmeanROC->GetValue(irow,ipad); | |
786 | //masked channels are outliers | |
787 | if (rocMasked && rocMasked->GetValue(irow,ipad)) masked=1; | |
788 | //edge pads are outliers | |
789 | if (ipad==0||ipad==npads-1) masked=1; | |
790 | //channels with too large charge or timing deviation from the meadian are outliers | |
791 | // if (TMath::Abs(q-qmedian)>fPulQmaxLimitAbs || TMath::Abs(t-tmedian)>fPulTmaxLimitAbs) outlier=1; | |
792 | if (q<fPulQminLimit && !masked) outlier=1; | |
793 | //check for nan | |
794 | if ( !(q<10000000) || !(t<10000000)) outlier=1; | |
795 | outROC->SetValue(irow,ipad,outlier+masked); | |
796 | fNpulserOutliers+=outlier; | |
797 | } | |
798 | } | |
799 | } | |
800 | } | |
801 | //_____________________________________________________________________________________ | |
2cb269df | 802 | AliTPCCalPad* AliTPCcalibDButil::CreatePadTime0(Int_t model, Double_t &gyA, Double_t &gyC, Double_t &chi2A, Double_t &chi2C ) |
892226be | 803 | { |
804 | // | |
805 | // Create pad time0 object from pulser and/or CE data, depending on the selected model | |
806 | // Model 0: normalise each readout chamber to its mean, outlier cutted, only Pulser | |
807 | // Model 1: normalise IROCs/OROCs of each readout side to its mean, only Pulser | |
732e90a8 | 808 | // Model 2: use CE data and a combination CE fit + pulser in the outlier regions. |
892226be | 809 | // |
2cb269df | 810 | // In case model 2 is invoked - gy arival time gradient is also returned |
811 | // | |
812 | gyA=0; | |
813 | gyC=0; | |
892226be | 814 | AliTPCCalPad *padTime0=new AliTPCCalPad("PadTime0",Form("PadTime0-Model_%d",model)); |
815 | // decide between different models | |
816 | if (model==0||model==1){ | |
817 | TVectorD vMean; | |
818 | if (model==1) ProcessPulser(vMean); | |
819 | for (UInt_t isec=0;isec<AliTPCCalPad::kNsec;++isec){ | |
820 | AliTPCCalROC *rocPulTmean=fPulserTmean->GetCalROC(isec); | |
821 | if (!rocPulTmean) continue; | |
822 | AliTPCCalROC *rocTime0=padTime0->GetCalROC(isec); | |
823 | AliTPCCalROC *rocOut=fPulserOutlier->GetCalROC(isec); | |
824 | Float_t mean=rocPulTmean->GetMean(rocOut); | |
825 | //treat case where a whole partition is masked | |
826 | if (mean==0) mean=rocPulTmean->GetMean(); | |
827 | if (model==1) { | |
828 | Int_t type=isec/18; | |
829 | mean=vMean[type]; | |
830 | } | |
831 | UInt_t nrows=rocTime0->GetNrows(); | |
832 | for (UInt_t irow=0;irow<nrows;++irow){ | |
833 | UInt_t npads=rocTime0->GetNPads(irow); | |
834 | for (UInt_t ipad=0;ipad<npads;++ipad){ | |
835 | Float_t time=rocPulTmean->GetValue(irow,ipad); | |
836 | //in case of an outlier pad use the mean of the altro values. | |
837 | //This should be the most precise guess in that case. | |
838 | if (rocOut->GetValue(irow,ipad)) { | |
839 | time=GetMeanAltro(rocPulTmean,irow,ipad,rocOut); | |
840 | if (time==0) time=mean; | |
841 | } | |
842 | Float_t val=time-mean; | |
843 | rocTime0->SetValue(irow,ipad,val); | |
844 | } | |
845 | } | |
846 | } | |
2cb269df | 847 | } else if (model==2){ |
848 | Double_t pgya,pgyc,pchi2a,pchi2c; | |
849 | AliTPCCalPad * padPulser = CreatePadTime0(1,pgya,pgyc,pchi2a,pchi2c); | |
850 | fCETmean->Add(padPulser,-1.); | |
732e90a8 | 851 | TVectorD vA,vC; |
852 | AliTPCCalPad outCE("outCE","outCE"); | |
853 | Int_t nOut; | |
2cb269df | 854 | ProcessCEdata("(sector<36)++gy++gx++(lx-134)++(sector<36)*(lx-134)++(ly/lx)^2",vA,vC,nOut,chi2A, chi2C,&outCE); |
855 | AliTPCCalPad *padFit=AliTPCCalPad::CreateCalPadFit("1++0++gy++0++(lx-134)++0++0",vA,vC); | |
732e90a8 | 856 | // AliTPCCalPad *padFit=AliTPCCalPad::CreateCalPadFit("1++(sector<36)++gy++gx++(lx-134)++(sector<36)*(lx-134)",vA,vC); |
2cb269df | 857 | if (!padFit) { delete padPulser; return 0;} |
858 | gyA=vA[2]; | |
859 | gyC=vC[2]; | |
860 | fCETmean->Add(padPulser,1.); | |
732e90a8 | 861 | padTime0->Add(fCETmean); |
2cb269df | 862 | padTime0->Add(padFit,-1); |
863 | delete padPulser; | |
732e90a8 | 864 | TVectorD vFitROC; |
865 | TMatrixD mFitROC; | |
866 | Float_t chi2; | |
867 | for (UInt_t isec=0;isec<AliTPCCalPad::kNsec;++isec){ | |
868 | AliTPCCalROC *rocPulTmean=fPulserTmean->GetCalROC(isec); | |
869 | AliTPCCalROC *rocTime0=padTime0->GetCalROC(isec); | |
870 | AliTPCCalROC *rocOutPul=fPulserOutlier->GetCalROC(isec); | |
871 | AliTPCCalROC *rocOutCE=outCE.GetCalROC(isec); | |
872 | rocTime0->GlobalFit(rocOutCE,kFALSE,vFitROC,mFitROC,chi2); | |
873 | AliTPCCalROC *rocCEfit=AliTPCCalROC::CreateGlobalFitCalROC(vFitROC, isec); | |
874 | Float_t mean=rocPulTmean->GetMean(rocOutPul); | |
875 | if (mean==0) mean=rocPulTmean->GetMean(); | |
876 | UInt_t nrows=rocTime0->GetNrows(); | |
877 | for (UInt_t irow=0;irow<nrows;++irow){ | |
878 | UInt_t npads=rocTime0->GetNPads(irow); | |
879 | for (UInt_t ipad=0;ipad<npads;++ipad){ | |
880 | Float_t timePulser=rocPulTmean->GetValue(irow,ipad)-mean; | |
881 | if (rocOutCE->GetValue(irow,ipad)){ | |
882 | Float_t valOut=rocCEfit->GetValue(irow,ipad); | |
883 | if (!rocOutPul->GetValue(irow,ipad)) valOut+=timePulser; | |
884 | rocTime0->SetValue(irow,ipad,valOut); | |
885 | } | |
886 | } | |
887 | } | |
888 | delete rocCEfit; | |
889 | } | |
890 | delete padFit; | |
892226be | 891 | } |
2cb269df | 892 | Double_t median = padTime0->GetMedian(); |
893 | padTime0->Add(-median); // normalize to median | |
892226be | 894 | return padTime0; |
895 | } | |
896 | //_____________________________________________________________________________________ | |
897 | Float_t AliTPCcalibDButil::GetMeanAltro(const AliTPCCalROC *roc, const Int_t row, const Int_t pad, AliTPCCalROC *rocOut) | |
898 | { | |
899 | if (roc==0) return 0.; | |
900 | const Int_t sector=roc->GetSector(); | |
901 | AliTPCROC *tpcRoc=AliTPCROC::Instance(); | |
902 | const UInt_t altroRoc=fMapper->GetFEC(sector,row,pad)*8+fMapper->GetChip(sector,row,pad); | |
903 | Float_t mean=0; | |
904 | Int_t n=0; | |
905 | ||
906 | //loop over a small range around the requested pad (+-10 rows/pads) | |
907 | for (Int_t irow=row-10;irow<row+10;++irow){ | |
908 | if (irow<0||irow>(Int_t)tpcRoc->GetNRows(sector)-1) continue; | |
909 | for (Int_t ipad=pad-10; ipad<pad+10;++ipad){ | |
910 | if (ipad<0||ipad>(Int_t)tpcRoc->GetNPads(sector,irow)-1) continue; | |
911 | const UInt_t altroCurr=fMapper->GetFEC(sector,irow,ipad)*8+fMapper->GetChip(sector,irow,ipad); | |
912 | if (altroRoc!=altroCurr) continue; | |
913 | if ( rocOut && rocOut->GetValue(irow,ipad) ) continue; | |
914 | Float_t val=roc->GetValue(irow,ipad); | |
915 | mean+=val; | |
916 | ++n; | |
917 | } | |
918 | } | |
919 | if (n>0) mean/=n; | |
920 | return mean; | |
921 | } | |
7390f655 | 922 | //_____________________________________________________________________________________ |
923 | void AliTPCcalibDButil::SetRefFile(const char* filename) | |
924 | { | |
925 | // | |
926 | // load cal pad objects form the reference file | |
927 | // | |
928 | TDirectory *currDir=gDirectory; | |
929 | TFile f(filename); | |
930 | fRefPedestals=(AliTPCCalPad*)f.Get("Pedestals"); | |
931 | fRefPadNoise=(AliTPCCalPad*)f.Get("PadNoise"); | |
932 | //pulser data | |
933 | fRefPulserTmean=(AliTPCCalPad*)f.Get("PulserTmean"); | |
934 | fRefPulserTrms=(AliTPCCalPad*)f.Get("PulserTrms"); | |
935 | fRefPulserQmean=(AliTPCCalPad*)f.Get("PulserQmean"); | |
936 | //CE data | |
937 | fRefCETmean=(AliTPCCalPad*)f.Get("CETmean"); | |
938 | fRefCETrms=(AliTPCCalPad*)f.Get("CETrms"); | |
939 | fRefCEQmean=(AliTPCCalPad*)f.Get("CEQmean"); | |
940 | //Altro data | |
941 | // fRefALTROAcqStart=(AliTPCCalPad*)f.Get("ALTROAcqStart"); | |
942 | // fRefALTROZsThr=(AliTPCCalPad*)f.Get("ALTROZsThr"); | |
943 | // fRefALTROFPED=(AliTPCCalPad*)f.Get("ALTROFPED"); | |
944 | // fRefALTROAcqStop=(AliTPCCalPad*)f.Get("ALTROAcqStop"); | |
945 | fRefALTROMasked=(AliTPCCalPad*)f.Get("ALTROMasked"); | |
946 | f.Close(); | |
947 | currDir->cd(); | |
948 | } | |
949 | ||
2cb269df | 950 | |
951 | ||
952 | ||
953 | AliTPCCalPad *AliTPCcalibDButil::CreateCEOutlyerMap( Int_t & noutliersCE, AliTPCCalPad *ceOut, Float_t minSignal, Float_t cutTrmsMin, Float_t cutTrmsMax, Float_t cutMaxDistT){ | |
954 | // | |
955 | // Author: marian.ivanov@cern.ch | |
956 | // | |
957 | // Create outlier map for CE study | |
958 | // Parameters: | |
959 | // Return value - outlyer map | |
960 | // noutlyersCE - number of outlyers | |
961 | // minSignal - minimal total Q signal | |
962 | // cutRMSMin - minimal width of the signal in respect to the median | |
963 | // cutRMSMax - maximal width of the signal in respect to the median | |
964 | // cutMaxDistT - maximal deviation from time median per chamber | |
965 | // | |
966 | // Outlyers criteria: | |
967 | // 0. Exclude masked pads | |
968 | // 1. Exclude first two rows in IROC and last two rows in OROC | |
969 | // 2. Exclude edge pads | |
970 | // 3. Exclude channels with too large variations | |
971 | // 4. Exclude pads with too small signal | |
972 | // 5. Exclude signal with outlyers RMS | |
973 | // 6. Exclude channels to far from the chamber median | |
974 | noutliersCE=0; | |
975 | //create outlier map | |
976 | AliTPCCalPad *out=ceOut; | |
977 | if (!out) out= new AliTPCCalPad("outCE","outCE"); | |
978 | AliTPCCalROC *rocMasked=0x0; | |
979 | if (!fCETmean) return 0; | |
980 | if (!fCETrms) return 0; | |
981 | if (!fCEQmean) return 0; | |
982 | // | |
983 | //loop over all channels | |
984 | // | |
985 | Double_t rmsMedian = fCETrms->GetMedian(); | |
986 | for (UInt_t iroc=0;iroc<fCETmean->kNsec;++iroc){ | |
987 | AliTPCCalROC *rocData=fCETmean->GetCalROC(iroc); | |
988 | if (fALTROMasked) rocMasked= fALTROMasked->GetCalROC(iroc); | |
989 | AliTPCCalROC *rocOut = out->GetCalROC(iroc); | |
990 | AliTPCCalROC *rocCEQ = fCEQmean->GetCalROC(iroc); | |
991 | AliTPCCalROC *rocCETrms = fCETrms->GetCalROC(iroc); | |
992 | Double_t trocMedian = rocData->GetMedian(); | |
993 | // | |
994 | if (!rocData) { | |
995 | noutliersCE+=AliTPCROC::Instance()->GetNChannels(iroc); | |
996 | rocOut->Add(1.); | |
997 | continue; | |
998 | } | |
999 | // | |
1000 | //select outliers | |
1001 | UInt_t nrows=rocData->GetNrows(); | |
1002 | for (UInt_t irow=0;irow<nrows;++irow){ | |
1003 | UInt_t npads=rocData->GetNPads(irow); | |
1004 | for (UInt_t ipad=0;ipad<npads;++ipad){ | |
1005 | rocOut->SetValue(irow,ipad,0); | |
1006 | Float_t valTmean=rocData->GetValue(irow,ipad); | |
1007 | Float_t valQmean=rocCEQ->GetValue(irow,ipad); | |
1008 | Float_t valTrms =rocCETrms->GetValue(irow,ipad); | |
1009 | //0. exclude masked pads | |
1010 | if (rocMasked && rocMasked->GetValue(irow,ipad)) { | |
1011 | rocOut->SetValue(irow,ipad,1); | |
1012 | continue; | |
1013 | } | |
1014 | //1. exclude first two rows in IROC and last two rows in OROC | |
1015 | if (iroc<36){ | |
1016 | if (irow<2) rocOut->SetValue(irow,ipad,1); | |
1017 | } else { | |
1018 | if (irow>nrows-3) rocOut->SetValue(irow,ipad,1); | |
1019 | } | |
1020 | //2. exclude edge pads | |
1021 | if (ipad==0||ipad==npads-1) rocOut->SetValue(irow,ipad,1); | |
1022 | //exclude values that are exactly 0 | |
1023 | if (valTmean==0) { | |
1024 | rocOut->SetValue(irow,ipad,1); | |
1025 | ++noutliersCE; | |
1026 | } | |
1027 | //3. exclude channels with too large variations | |
1028 | if (TMath::Abs(valTmean)>fCETmaxLimitAbs) { | |
1029 | rocOut->SetValue(irow,ipad,1); | |
1030 | ++noutliersCE; | |
1031 | } | |
1032 | // | |
1033 | //4. exclude channels with too small signal | |
1034 | if (valQmean<minSignal) { | |
1035 | rocOut->SetValue(irow,ipad,1); | |
1036 | ++noutliersCE; | |
1037 | } | |
1038 | // | |
1039 | //5. exclude channels with too small rms | |
1040 | if (valTrms<cutTrmsMin*rmsMedian || valTrms>cutTrmsMax*rmsMedian){ | |
1041 | rocOut->SetValue(irow,ipad,1); | |
1042 | ++noutliersCE; | |
1043 | } | |
1044 | // | |
1045 | //6. exclude channels to far from the chamber median | |
1046 | if (TMath::Abs(valTmean-trocMedian)>cutMaxDistT){ | |
1047 | rocOut->SetValue(irow,ipad,1); | |
1048 | ++noutliersCE; | |
1049 | } | |
1050 | } | |
1051 | } | |
1052 | } | |
1053 | // | |
1054 | return out; | |
1055 | } | |
1056 | ||
1057 | ||
1058 | AliTPCCalPad *AliTPCcalibDButil::CreatePulserOutlyerMap(Int_t &noutliersPulser, AliTPCCalPad *pulserOut,Float_t cutTime, Float_t cutnRMSQ, Float_t cutnRMSrms){ | |
1059 | // | |
1060 | // Author: marian.ivanov@cern.ch | |
1061 | // | |
1062 | // Create outlier map for Pulser | |
1063 | // Parameters: | |
1064 | // Return value - outlyer map | |
1065 | // noutlyersPulser - number of outlyers | |
1066 | // cutTime - absolute cut - distance to the median of chamber | |
1067 | // cutnRMSQ - nsigma cut from median q distribution per chamber | |
1068 | // cutnRMSrms - nsigma cut from median rms distribution | |
1069 | // Outlyers criteria: | |
1070 | // 0. Exclude masked pads | |
1071 | // 1. Exclude time outlyers (default 3 time bins) | |
1072 | // 2. Exclude q outlyers (default 5 sigma) | |
1073 | // 3. Exclude rms outlyers (default 5 sigma) | |
1074 | noutliersPulser=0; | |
1075 | AliTPCCalPad *out=pulserOut; | |
1076 | if (!out) out= new AliTPCCalPad("outPulser","outPulser"); | |
1077 | AliTPCCalROC *rocMasked=0x0; | |
1078 | if (!fPulserTmean) return 0; | |
1079 | if (!fPulserTrms) return 0; | |
1080 | if (!fPulserQmean) return 0; | |
1081 | // | |
1082 | //loop over all channels | |
1083 | // | |
1084 | for (UInt_t iroc=0;iroc<fCETmean->kNsec;++iroc){ | |
1085 | if (fALTROMasked) rocMasked= fALTROMasked->GetCalROC(iroc); | |
1086 | AliTPCCalROC *rocData = fPulserTmean->GetCalROC(iroc); | |
1087 | AliTPCCalROC *rocOut = out->GetCalROC(iroc); | |
1088 | AliTPCCalROC *rocPulserQ = fPulserQmean->GetCalROC(iroc); | |
1089 | AliTPCCalROC *rocPulserTrms = fPulserTrms->GetCalROC(iroc); | |
1090 | // | |
1091 | Double_t rocMedianT = rocData->GetMedian(); | |
1092 | Double_t rocMedianQ = rocPulserQ->GetMedian(); | |
1093 | Double_t rocRMSQ = rocPulserQ->GetRMS(); | |
1094 | Double_t rocMedianTrms = rocPulserTrms->GetMedian(); | |
1095 | Double_t rocRMSTrms = rocPulserTrms->GetRMS(); | |
1096 | for (UInt_t ichannel=0;ichannel<rocData->GetNchannels();++ichannel){ | |
1097 | rocOut->SetValue(ichannel,0); | |
1098 | Float_t valTmean=rocData->GetValue(ichannel); | |
1099 | Float_t valQmean=rocPulserQ->GetValue(ichannel); | |
1100 | Float_t valTrms =rocPulserTrms->GetValue(ichannel); | |
1101 | Int_t isOut=0; | |
1102 | if (TMath::Abs(valTmean-rocMedianT)>cutTime) isOut=1; | |
1103 | if (TMath::Abs(valQmean-rocMedianQ)>cutnRMSQ*rocRMSQ) isOut=1; | |
1104 | if (TMath::Abs(valTrms-rocMedianTrms)>cutnRMSrms*rocRMSTrms) isOut=1; | |
1105 | rocOut->SetValue(ichannel,isOut); | |
1106 | if (isOut) noutliersPulser++; | |
1107 | } | |
1108 | } | |
1109 | return out; | |
1110 | } | |
1111 | ||
1112 | ||
1113 | AliTPCCalPad *AliTPCcalibDButil::CreatePadTime0CE(TVectorD &fitResultsA, TVectorD&fitResultsC, Int_t &nOut, Double_t &chi2A, Double_t &chi2C, const char *dumpfile){ | |
1114 | // | |
1115 | // Author : Marian Ivanov | |
1116 | // Create pad time0 correction map using information from the CE and from pulser | |
1117 | // | |
1118 | // | |
1119 | // Return PadTime0 to be used for time0 relative alignment | |
1120 | // if dump file specified intermediat results are dumped to the fiel and can be visualized | |
1121 | // using $ALICE_ROOT/TPC/script/gui application | |
1122 | // | |
1123 | // fitResultsA - fitParameters A side | |
1124 | // fitResultsC - fitParameters C side | |
1125 | // chi2A - chi2/ndf for A side (assuming error 1 time bin) | |
1126 | // chi2C - chi2/ndf for C side (assuming error 1 time bin) | |
1127 | // | |
1128 | // | |
1129 | // Algorithm: | |
1130 | // 1. Find outlier map for CE | |
1131 | // 2. Find outlier map for Pulser | |
1132 | // 3. Replace outlier by median at given sector (median without outliers) | |
1133 | // 4. Substract from the CE data pulser | |
1134 | // 5. Fit the CE with formula | |
1135 | // 5.1) (IROC-OROC) offset | |
1136 | // 5.2) gx | |
1137 | // 5.3) gy | |
1138 | // 5.4) (lx-xmid) | |
1139 | // 5.5) (IROC-OROC)*(lx-xmid) | |
1140 | // 5.6) (ly/lx)^2 | |
1141 | // 6. Substract gy fit dependence from the CE data | |
1142 | // 7. Add pulser back to CE data | |
1143 | // 8. Replace outliers by fit value - median of diff per given chamber -GY fit | |
1144 | // 9. return CE data | |
1145 | // | |
1146 | // Time0 <= padCE = padCEin -padCEfitGy - if not outlier | |
1147 | // Time0 <= padCE = padFitAll-padCEfitGy - if outlier | |
1148 | ||
1149 | // fit formula | |
1150 | const char *formulaIn="(-1.+2.*(sector<36))*0.5++gx++gy++(lx-134.)++(-1.+2.*(sector<36))*0.5*(lx-134)++((ly/lx)^2/(0.1763)^2)"; | |
1151 | // output for fit formula | |
1152 | const char *formulaAll="1++(-1.+2.*(sector<36))*0.5++gx++gy++(lx-134.)++(-1.+2.*(sector<36))*0.5*(lx-134)++((ly/lx)^2/(0.1763)^2)"; | |
1153 | // gy part of formula | |
1154 | const char *formulaOut="0++0*(-1.+2.*(sector<36))*0.5++0*gx++gy++0*(lx-134.)++0*(-1.+2.*(sector<36))*0.5*(lx-134)++0*((ly/lx)^2/(0.1763)^2)"; | |
1155 | // | |
1156 | // | |
1157 | if (!fCETmean) return 0; | |
1158 | Double_t pgya,pgyc,pchi2a,pchi2c; | |
1159 | AliTPCCalPad * padPulserOut = CreatePulserOutlyerMap(nOut); | |
1160 | AliTPCCalPad * padCEOut = CreateCEOutlyerMap(nOut); | |
1161 | ||
1162 | AliTPCCalPad * padPulser = CreatePadTime0(1,pgya,pgyc,pchi2a,pchi2c); | |
1163 | AliTPCCalPad * padCE = new AliTPCCalPad(*fCETmean); | |
1164 | AliTPCCalPad * padCEIn = new AliTPCCalPad(*fCETmean); | |
1165 | AliTPCCalPad * padOut = new AliTPCCalPad("padOut","padOut"); | |
1166 | padPulser->SetName("padPulser"); | |
1167 | padPulserOut->SetName("padPulserOut"); | |
1168 | padCE->SetName("padCE"); | |
1169 | padCEIn->SetName("padCEIn"); | |
1170 | padCEOut->SetName("padCEOut"); | |
1171 | padOut->SetName("padOut"); | |
1172 | ||
1173 | // | |
1174 | // make combined outlyers map | |
1175 | // and replace outlyers in maps with median for chamber | |
1176 | // | |
1177 | for (UInt_t iroc=0;iroc<fCETmean->kNsec;++iroc){ | |
1178 | AliTPCCalROC * rocOut = padOut->GetCalROC(iroc); | |
1179 | AliTPCCalROC * rocPulser = padPulser->GetCalROC(iroc); | |
1180 | AliTPCCalROC * rocPulserOut = padPulserOut->GetCalROC(iroc); | |
1181 | AliTPCCalROC * rocCEOut = padCEOut->GetCalROC(iroc); | |
1182 | AliTPCCalROC * rocCE = padCE->GetCalROC(iroc); | |
1183 | Double_t ceMedian = rocCE->GetMedian(rocCEOut); | |
1184 | Double_t pulserMedian = rocPulser->GetMedian(rocCEOut); | |
1185 | for (UInt_t ichannel=0;ichannel<rocOut->GetNchannels();++ichannel){ | |
1186 | if (rocPulserOut->GetValue(ichannel)>0) { | |
1187 | rocPulser->SetValue(ichannel,pulserMedian); | |
1188 | rocOut->SetValue(ichannel,1); | |
1189 | } | |
1190 | if (rocCEOut->GetValue(ichannel)>0) { | |
1191 | rocCE->SetValue(ichannel,ceMedian); | |
1192 | rocOut->SetValue(ichannel,1); | |
1193 | } | |
1194 | } | |
1195 | } | |
1196 | // | |
1197 | // remove pulser time 0 | |
1198 | // | |
1199 | padCE->Add(padPulser,-1); | |
1200 | // | |
1201 | // Make fits | |
1202 | // | |
1203 | TMatrixD dummy; | |
1204 | Float_t chi2Af,chi2Cf; | |
1205 | padCE->GlobalSidesFit(padOut,formulaIn,fitResultsA,fitResultsC,dummy,dummy,chi2Af,chi2Cf); | |
1206 | chi2A=chi2Af; | |
1207 | chi2C=chi2Cf; | |
1208 | // | |
1209 | AliTPCCalPad *padCEFitGY=AliTPCCalPad::CreateCalPadFit(formulaOut,fitResultsA,fitResultsC); | |
1210 | padCEFitGY->SetName("padCEFitGy"); | |
1211 | // | |
1212 | AliTPCCalPad *padCEFit =AliTPCCalPad::CreateCalPadFit(formulaAll,fitResultsA,fitResultsC); | |
1213 | padCEFit->SetName("padCEFit"); | |
1214 | // | |
1215 | AliTPCCalPad* padCEDiff = new AliTPCCalPad(*padCE); | |
1216 | padCEDiff->SetName("padCEDiff"); | |
1217 | padCEDiff->Add(padCEFit,-1.); | |
1218 | // | |
1219 | // | |
1220 | padCE->Add(padCEFitGY,-1.); | |
1221 | ||
1222 | padCE->Add(padPulser,1.); | |
1223 | Double_t padmedian = padCE->GetMedian(); | |
1224 | padCE->Add(-padmedian); // normalize to median | |
1225 | // | |
1226 | // Replace outliers by fit value - median of diff per given chamber -GY fit | |
1227 | // | |
1228 | for (UInt_t iroc=0;iroc<fCETmean->kNsec;++iroc){ | |
1229 | AliTPCCalROC * rocOut = padOut->GetCalROC(iroc); | |
1230 | AliTPCCalROC * rocCE = padCE->GetCalROC(iroc); | |
1231 | AliTPCCalROC * rocCEFit = padCEFit->GetCalROC(iroc); | |
1232 | AliTPCCalROC * rocCEFitGY = padCEFitGY->GetCalROC(iroc); | |
1233 | AliTPCCalROC * rocCEDiff = padCEDiff->GetCalROC(iroc); | |
1234 | // | |
1235 | Double_t diffMedian = rocCEDiff->GetMedian(rocOut); | |
1236 | for (UInt_t ichannel=0;ichannel<rocOut->GetNchannels();++ichannel){ | |
1237 | if (rocOut->GetValue(ichannel)==0) continue; | |
1238 | Float_t value=rocCEFit->GetValue(ichannel)-rocCEFitGY->GetValue(ichannel)-diffMedian-padmedian; | |
1239 | rocCE->SetValue(ichannel,value); | |
1240 | } | |
1241 | } | |
1242 | // | |
1243 | // | |
1244 | if (dumpfile){ | |
1245 | //dump to the file - result can be visualized | |
1246 | AliTPCPreprocessorOnline preprocesor; | |
1247 | preprocesor.AddComponent(new AliTPCCalPad(*padCE)); | |
1248 | preprocesor.AddComponent(new AliTPCCalPad(*padCEIn)); | |
1249 | preprocesor.AddComponent(new AliTPCCalPad(*padCEFit)); | |
1250 | preprocesor.AddComponent(new AliTPCCalPad(*padOut)); | |
1251 | // | |
1252 | preprocesor.AddComponent(new AliTPCCalPad(*padCEFitGY)); | |
1253 | preprocesor.AddComponent(new AliTPCCalPad(*padCEDiff)); | |
1254 | // | |
1255 | preprocesor.AddComponent(new AliTPCCalPad(*padCEOut)); | |
1256 | preprocesor.AddComponent(new AliTPCCalPad(*padPulser)); | |
1257 | preprocesor.AddComponent(new AliTPCCalPad(*padPulserOut)); | |
1258 | preprocesor.DumpToFile(dumpfile); | |
1259 | } | |
1260 | delete padPulser; | |
1261 | delete padPulserOut; | |
1262 | delete padCEIn; | |
1263 | delete padCEOut; | |
1264 | delete padOut; | |
1265 | delete padCEDiff; | |
1266 | delete padCEFitGY; | |
1267 | return padCE; | |
1268 | } | |
1269 |