bugfix: external interface was calling AliHLTComponent::Init twice since r27483

[u/mrichter/AliRoot.git] / TPC / AliTPCseed.cxx

/**************************************************************************
 * Copyright(c) 1998-1999, ALICE Experiment at CERN, All rights reserved. *
 *                                                                        *
 * Author: The ALICE Off-line Project.                                    *
 * Contributors are mentioned in the code where appropriate.              *
 *                                                                        *
 * Permission to use, copy, modify and distribute this software and its   *
 * documentation strictly for non-commercial purposes is hereby granted   *
 * without fee, provided that the above copyright notice appears in all   *
 * copies and that both the copyright notice and this permission notice   *
 * appear in the supporting documentation. The authors make no claims     *
 * about the suitability of this software for any purpose. It is          *
 * provided "as is" without express or implied warranty.                  *
 **************************************************************************/




//-----------------------------------------------------------------
//           Implementation of the TPC seed class
//        This class is used by the AliTPCtrackerMI class
//      Origin: Marian Ivanov, CERN, Marian.Ivanov@cern.ch
//-----------------------------------------------------------------
#include "TClonesArray.h"
#include "AliTPCseed.h"
#include "AliTPCReconstructor.h"
#include "AliTPCClusterParam.h"
#include "AliTPCCalPad.h"
#include "AliTPCCalROC.h"



ClassImp(AliTPCseed)



AliTPCseed::AliTPCseed():
  AliTPCtrack(),
  fEsd(0x0),
  fClusterOwner(kFALSE),
  fRow(0),
  fSector(-1),
  fRelativeSector(-1),
  fCurrentSigmaY2(1e10),
  fCurrentSigmaZ2(1e10),
  fCMeanSigmaY2p30(-1.),   //! current mean sigma Y2 - mean30%
  fCMeanSigmaZ2p30(-1.),   //! current mean sigma Z2 - mean30%
  fCMeanSigmaY2p30R(-1.),   //! current mean sigma Y2 - mean2%
  fCMeanSigmaZ2p30R(-1.),   //! current mean sigma Z2 - mean2%
  //
  fErrorY2(1e10),
  fErrorZ2(1e10),
  fCurrentCluster(0x0),
  fCurrentClusterIndex1(-1),
  fInDead(kFALSE),
  fIsSeeding(kFALSE),
  fNoCluster(0),
  fSort(0),
  fBSigned(kFALSE),
  fSeedType(0),
  fSeed1(-1),
  fSeed2(-1),
  fMAngular(0),
  fCircular(0),
  fClusterMap(159),
  fSharedMap(159)
{
  //
  for (Int_t i=0;i<160;i++) SetClusterIndex2(i,-3);
  for (Int_t i=0;i<160;i++) fClusterPointer[i]=0;
  for (Int_t i=0;i<3;i++)   fKinkIndexes[i]=0;
  for (Int_t i=0;i<AliPID::kSPECIES;i++)   fTPCr[i]=0.2;
  for (Int_t i=0;i<4;i++) {
    fDEDX[i] = 0.;
    fSDEDX[i] = 1e10;
    fNCDEDX[i] = 0;
  }
  for (Int_t i=0;i<12;i++) fOverlapLabels[i] = -1;
  //  for (Int_t i=0;i<160;i++) fClusterMap[i]=kFALSE;
  //for (Int_t i=0;i<160;i++) fSharedMap[i]=kFALSE;
  fClusterMap.ResetAllBits(kFALSE);
  fSharedMap.ResetAllBits(kFALSE);

}

AliTPCseed::AliTPCseed(const AliTPCseed &s, Bool_t clusterOwner):
  AliTPCtrack(s),
  fEsd(0x0),
  fClusterOwner(clusterOwner),
  fRow(0),
  fSector(-1),
  fRelativeSector(-1),
  fCurrentSigmaY2(-1),
  fCurrentSigmaZ2(-1),
  fCMeanSigmaY2p30(-1.),   //! current mean sigma Y2 - mean30%
  fCMeanSigmaZ2p30(-1.),   //! current mean sigma Z2 - mean30%
  fCMeanSigmaY2p30R(-1.),   //! current mean sigma Y2 - mean2%
  fCMeanSigmaZ2p30R(-1.),   //! current mean sigma Z2 - mean2%
  fErrorY2(1e10),
  fErrorZ2(1e10),
  fCurrentCluster(0x0),
  fCurrentClusterIndex1(-1),
  fInDead(kFALSE),
  fIsSeeding(kFALSE),
  fNoCluster(0),
  fSort(0),
  fBSigned(kFALSE),
  fSeedType(0),
  fSeed1(-1),
  fSeed2(-1),
  fMAngular(0),
  fCircular(0),
  fClusterMap(s.fClusterMap),
  fSharedMap(s.fSharedMap)
{
  //---------------------
  // dummy copy constructor
  //-------------------------
  for (Int_t i=0;i<160;i++) {
    fClusterPointer[i]=0;
    if (fClusterOwner){
      if (s.fClusterPointer[i])
	fClusterPointer[i] = new AliTPCclusterMI(*(s.fClusterPointer[i]));
    }else{
      fClusterPointer[i] = s.fClusterPointer[i];
    }
    fTrackPoints[i] = s.fTrackPoints[i];
  }
  for (Int_t i=0;i<160;i++) fIndex[i] = s.fIndex[i];
  for (Int_t i=0;i<AliPID::kSPECIES;i++)   fTPCr[i]=s.fTPCr[i];
  for (Int_t i=0;i<4;i++) {
    fDEDX[i] = s.fDEDX[i];
    fSDEDX[i] = s.fSDEDX[i];
    fNCDEDX[i] = s.fNCDEDX[i];
  }
  for (Int_t i=0;i<12;i++) fOverlapLabels[i] = s.fOverlapLabels[i];

}


AliTPCseed::AliTPCseed(const AliTPCtrack &t):
  AliTPCtrack(t),
  fEsd(0x0),
  fClusterOwner(kFALSE),
  fRow(0),
  fSector(-1),
  fRelativeSector(-1),
  fCurrentSigmaY2(-1),
  fCurrentSigmaZ2(-1),
  fCMeanSigmaY2p30(-1.),   //! current mean sigma Y2 - mean30%
  fCMeanSigmaZ2p30(-1.),   //! current mean sigma Z2 - mean30%
  fCMeanSigmaY2p30R(-1.),   //! current mean sigma Y2 - mean2%
  fCMeanSigmaZ2p30R(-1.),   //! current mean sigma Z2 - mean2%
  fErrorY2(1e10),
  fErrorZ2(1e10),
  fCurrentCluster(0x0),
  fCurrentClusterIndex1(-1),
  fInDead(kFALSE),
  fIsSeeding(kFALSE),
  fNoCluster(0),
  fSort(0),
  fBSigned(kFALSE),
  fSeedType(0),
  fSeed1(-1),
  fSeed2(-1),
  fMAngular(0),
  fCircular(0),
  fClusterMap(159),
  fSharedMap(159)
{
  //
  // Constructor from AliTPCtrack
  //
  fFirstPoint =0;
  for (Int_t i=0;i<5;i++)   fTPCr[i]=0.2;
  for (Int_t i=0;i<160;i++) {
    fClusterPointer[i] = 0;
    Int_t index = t.GetClusterIndex(i);
    if (index>=-1){ 
      SetClusterIndex2(i,index);
    }
    else{
      SetClusterIndex2(i,-3); 
    }    
  }
  for (Int_t i=0;i<4;i++) {
    fDEDX[i] = 0.;
    fSDEDX[i] = 1e10;
    fNCDEDX[i] = 0;
  }
  for (Int_t i=0;i<12;i++) fOverlapLabels[i] = -1;
  
  //for (Int_t i=0;i<160;i++) fClusterMap[i]=kFALSE;
  //for (Int_t i=0;i<160;i++) fSharedMap[i]=kFALSE;
  fClusterMap.ResetAllBits(kFALSE);
  fSharedMap.ResetAllBits(kFALSE);

}

AliTPCseed::AliTPCseed(Double_t xr, Double_t alpha, const Double_t xx[5],
		       const Double_t cc[15], Int_t index):      
  AliTPCtrack(xr, alpha, xx, cc, index),
  fEsd(0x0),
  fClusterOwner(kFALSE),
  fRow(0),
  fSector(-1),
  fRelativeSector(-1),
  fCurrentSigmaY2(-1),
  fCurrentSigmaZ2(-1),
  fCMeanSigmaY2p30(-1.),   //! current mean sigma Y2 - mean30%
  fCMeanSigmaZ2p30(-1.),   //! current mean sigma Z2 - mean30%
  fCMeanSigmaY2p30R(-1.),   //! current mean sigma Y2 - mean2%
  fCMeanSigmaZ2p30R(-1.),   //! current mean sigma Z2 - mean2%
  fErrorY2(1e10),
  fErrorZ2(1e10),
  fCurrentCluster(0x0),
  fCurrentClusterIndex1(-1),
  fInDead(kFALSE),
  fIsSeeding(kFALSE),
  fNoCluster(0),
  fSort(0),
  fBSigned(kFALSE),
  fSeedType(0),
  fSeed1(-1),
  fSeed2(-1),
  fMAngular(0),
  fCircular(0),
  fClusterMap(159),
  fSharedMap(159)
{
  //
  // Constructor
  //
  fFirstPoint =0;
  for (Int_t i=0;i<160;i++) SetClusterIndex2(i,-3);
  for (Int_t i=0;i<160;i++) fClusterPointer[i]=0;
  for (Int_t i=0;i<5;i++)   fTPCr[i]=0.2;
  for (Int_t i=0;i<4;i++) {
    fDEDX[i] = 0.;
    fSDEDX[i] = 1e10;
    fNCDEDX[i] = 0;
  }
  for (Int_t i=0;i<12;i++) fOverlapLabels[i] = -1;
}

AliTPCseed::~AliTPCseed(){
  //
  // destructor
  fNoCluster =0;
  if (fClusterOwner){
    for (Int_t icluster=0; icluster<160; icluster++){
      delete fClusterPointer[icluster];
    }
  }

}
//_________________________________________________
AliTPCseed & AliTPCseed::operator=(const AliTPCseed &param)
{
  //
  // assignment operator 
  //
  if(this!=&param){
    AliTPCtrack::operator=(param);
    fEsd =param.fEsd; 
    for(Int_t i = 0;i<160;++i)fClusterPointer[i] = param.fClusterPointer[i]; // this is not allocated by AliTPCSeed
    fClusterOwner = param.fClusterOwner;
    // leave out fPoint, they are also not copied in the copy ctor...
    // but deleted in the dtor... strange...
    fRow            = param.fRow;
    fSector         = param.fSector;
    fRelativeSector = param.fRelativeSector;
    fCurrentSigmaY2 = param.fCurrentSigmaY2;
    fCurrentSigmaZ2 = param.fCurrentSigmaZ2;
    fErrorY2        = param.fErrorY2;
    fErrorZ2        = param.fErrorZ2;
    fCurrentCluster = param.fCurrentCluster; // this is not allocated by AliTPCSeed
    fCurrentClusterIndex1 = param.fCurrentClusterIndex1; 
    fInDead         = param.fInDead;
    fIsSeeding      = param.fIsSeeding;
    fNoCluster      = param.fNoCluster;
    fSort           = param.fSort;
    fBSigned        = param.fBSigned;
    for(Int_t i = 0;i<4;++i){
      fDEDX[i]   = param.fDEDX[i];
      fSDEDX[i]  = param.fSDEDX[i];
      fNCDEDX[i] = param.fNCDEDX[i];
    }
    for(Int_t i = 0;i<AliPID::kSPECIES;++i)fTPCr[i] = param.fTPCr[i];
    
    fSeedType = param.fSeedType;
    fSeed1    = param.fSeed1;
    fSeed2    = param.fSeed2;
    for(Int_t i = 0;i<12;++i)fOverlapLabels[i] = param.fOverlapLabels[i];
    fMAngular = param.fMAngular;
    fCircular = param.fCircular;
    for(int i = 0;i<160;++i)fTrackPoints[i] =  param.fTrackPoints[i];
    fClusterMap = param.fClusterMap;
    fSharedMap = param.fSharedMap;
  }
  return (*this);
}
//____________________________________________________
AliTPCTrackerPoint * AliTPCseed::GetTrackPoint(Int_t i)
{
  //
  // 
  return &fTrackPoints[i];
}



Double_t AliTPCseed::GetDensityFirst(Int_t n)
{
  //
  //
  // return cluster for n rows bellow first point
  Int_t nfoundable = 1;
  Int_t nfound      = 1;
  for (Int_t i=fLastPoint-1;i>0&&nfoundable<n; i--){
    Int_t index = GetClusterIndex2(i);
    if (index!=-1) nfoundable++;
    if (index>0) nfound++;
  }
  if (nfoundable<n) return 0;
  return Double_t(nfound)/Double_t(nfoundable);

}


void AliTPCseed::GetClusterStatistic(Int_t first, Int_t last, Int_t &found, Int_t &foundable, Int_t &shared, Bool_t plus2)
{
  // get cluster stat.  on given region
  //
  found       = 0;
  foundable   = 0;
  shared      =0;
  for (Int_t i=first;i<last; i++){
    Int_t index = GetClusterIndex2(i);
    if (index!=-1) foundable++;
    if (index&0x8000) continue;
    if (fClusterPointer[i]) {
      found++;
    }
    else 
      continue;

    if (fClusterPointer[i]->IsUsed(10)) {
      shared++;
      continue;
    }
    if (!plus2) continue; //take also neighborhoud
    //
    if ( (i>0) && fClusterPointer[i-1]){
      if (fClusterPointer[i-1]->IsUsed(10)) {
	shared++;
	continue;
      }
    }
    if ( fClusterPointer[i+1]){
      if (fClusterPointer[i+1]->IsUsed(10)) {
	shared++;
	continue;
      }
    }
    
  }
  //if (shared>found){
    //Error("AliTPCseed::GetClusterStatistic","problem\n");
  //}
}





void AliTPCseed::Reset(Bool_t all)
{
  //
  //
  SetNumberOfClusters(0);
  fNFoundable = 0;
  SetChi2(0);
  ResetCovariance(10.);
  /*
  if (fTrackPoints){
    for (Int_t i=0;i<8;i++){
      delete [] fTrackPoints[i];
    }
    delete fTrackPoints;
    fTrackPoints =0;
  }
  */

  if (all){   
    for (Int_t i=0;i<200;i++) SetClusterIndex2(i,-3);
    for (Int_t i=0;i<160;i++) fClusterPointer[i]=0;
  }

}


void AliTPCseed::Modify(Double_t factor)
{

  //------------------------------------------------------------------
  //This function makes a track forget its history :)  
  //------------------------------------------------------------------
  if (factor<=0) {
    ResetCovariance(10.);
    return;
  }
  ResetCovariance(factor);

  SetNumberOfClusters(0);
  fNFoundable =0;
  SetChi2(0);
  fRemoval = 0;
  fCurrentSigmaY2 = 0.000005;
  fCurrentSigmaZ2 = 0.000005;
  fNoCluster     = 0;
  //fFirstPoint = 160;
  //fLastPoint  = 0;
}




Int_t  AliTPCseed::GetProlongation(Double_t xk, Double_t &y, Double_t & z) const
{
  //-----------------------------------------------------------------
  // This function find proloncation of a track to a reference plane x=xk.
  // doesn't change internal state of the track
  //-----------------------------------------------------------------
  
  Double_t x1=GetX(), x2=x1+(xk-x1), dx=x2-x1;

  if (TMath::Abs(GetSnp()+GetC()*dx) >= AliTPCReconstructor::GetMaxSnpTrack()) {   
    return 0;
  }

  //  Double_t y1=fP0, z1=fP1;
  Double_t c1=GetSnp(), r1=sqrt(1.- c1*c1);
  Double_t c2=c1 + GetC()*dx, r2=sqrt(1.- c2*c2);
  
  y = GetY();
  z = GetZ();
  //y += dx*(c1+c2)/(r1+r2);
  //z += dx*(c1+c2)/(c1*r2 + c2*r1)*fP3;
  
  Double_t dy = dx*(c1+c2)/(r1+r2);
  Double_t dz = 0;
  //
  Double_t delta = GetC()*dx*(c1+c2)/(c1*r2 + c2*r1);
  /*
  if (TMath::Abs(delta)>0.0001){
    dz = fP3*TMath::ASin(delta)/fP4;
  }else{
    dz = dx*fP3*(c1+c2)/(c1*r2 + c2*r1);
  }
  */
  //  dz =  fP3*AliTPCFastMath::FastAsin(delta)/fP4;
  dz =  GetTgl()*TMath::ASin(delta)/GetC();
  //
  y+=dy;
  z+=dz;
  

  return 1;  
}


//_____________________________________________________________________________
Double_t AliTPCseed::GetPredictedChi2(const AliCluster *c) const 
{
  //-----------------------------------------------------------------
  // This function calculates a predicted chi2 increment.
  //-----------------------------------------------------------------
  Double_t p[2]={c->GetY(), c->GetZ()};
  Double_t cov[3]={fErrorY2, 0., fErrorZ2};
  return AliExternalTrackParam::GetPredictedChi2(p,cov);
}

//_________________________________________________________________________________________


Int_t AliTPCseed::Compare(const TObject *o) const {
  //-----------------------------------------------------------------
  // This function compares tracks according to the sector - for given sector according z
  //-----------------------------------------------------------------
  AliTPCseed *t=(AliTPCseed*)o;

  if (fSort == 0){
    if (t->fRelativeSector>fRelativeSector) return -1;
    if (t->fRelativeSector<fRelativeSector) return 1;
    Double_t z2 = t->GetZ();
    Double_t z1 = GetZ();
    if (z2>z1) return 1;
    if (z2<z1) return -1;
    return 0;
  }
  else {
    Float_t f2 =1;
    f2 = 1-20*TMath::Sqrt(t->GetSigma1Pt2())/(t->OneOverPt()+0.0066);
    if (t->fBConstrain) f2=1.2;

    Float_t f1 =1;
    f1 = 1-20*TMath::Sqrt(GetSigma1Pt2())/(OneOverPt()+0.0066);

    if (fBConstrain)   f1=1.2;
 
    if (t->GetNumberOfClusters()*f2 <GetNumberOfClusters()*f1) return -1;
    else return +1;
  }
}




//_____________________________________________________________________________
Bool_t AliTPCseed::Update(const AliCluster *c, Double_t chisq, Int_t index)
{
  //-----------------------------------------------------------------
  // This function associates a cluster with this track.
  //-----------------------------------------------------------------
  Int_t n=GetNumberOfClusters();
  Int_t idx=GetClusterIndex(n);    // save the current cluster index

  AliCluster cl(*c);  cl.SetSigmaY2(fErrorY2); cl.SetSigmaZ2(fErrorZ2);
  if (!AliTPCtrack::Update(&cl,chisq,index)) return kFALSE;
  
  if (fCMeanSigmaY2p30<0){
    fCMeanSigmaY2p30= c->GetSigmaY2();   //! current mean sigma Y2 - mean30%
    fCMeanSigmaZ2p30= c->GetSigmaZ2();   //! current mean sigma Z2 - mean30%    
    fCMeanSigmaY2p30R = 1;   //! current mean sigma Y2 - mean5%
    fCMeanSigmaZ2p30R = 1;   //! current mean sigma Z2 - mean5%
  }
  //
  fCMeanSigmaY2p30= 0.70*fCMeanSigmaY2p30 +0.30*c->GetSigmaY2();   
  fCMeanSigmaZ2p30= 0.70*fCMeanSigmaZ2p30 +0.30*c->GetSigmaZ2();  
  if (fCurrentSigmaY2>0){
    fCMeanSigmaY2p30R = 0.7*fCMeanSigmaY2p30R  +0.3*c->GetSigmaY2()/fCurrentSigmaY2;  
    fCMeanSigmaZ2p30R = 0.7*fCMeanSigmaZ2p30R  +0.3*c->GetSigmaZ2()/fCurrentSigmaZ2;   
  }


  SetClusterIndex(n,idx);          // restore the current cluster index
  return kTRUE;
}



//_____________________________________________________________________________
Float_t AliTPCseed::CookdEdx(Double_t low, Double_t up,Int_t i1, Int_t i2, Bool_t onlyused) {
  //-----------------------------------------------------------------
  // This funtion calculates dE/dX within the "low" and "up" cuts.
  //-----------------------------------------------------------------

  Float_t amp[200];
  Float_t angular[200];
  Float_t weight[200];
  Int_t index[200];
  //Int_t nc = 0;
  Float_t meanlog = 100.;
  
  Float_t mean[4]  = {0,0,0,0};
  Float_t sigma[4] = {1000,1000,1000,1000};
  Int_t nc[4]      = {0,0,0,0};
  Float_t norm[4]    = {1000,1000,1000,1000};
  //
  //
  fNShared =0;

  for (Int_t of =0; of<4; of++){    
    for (Int_t i=of+i1;i<i2;i+=4)
      {
	Int_t index = fIndex[i];
	if (index<0||index&0x8000) continue;

	//AliTPCTrackPoint * point = (AliTPCTrackPoint *) arr.At(i);
	AliTPCTrackerPoint * point = GetTrackPoint(i);
	//AliTPCTrackerPoint * pointm = GetTrackPoint(i-1);
	//AliTPCTrackerPoint * pointp = 0;
	//if (i<159) pointp = GetTrackPoint(i+1);

	if (point==0) continue;
	AliTPCclusterMI * cl = fClusterPointer[i];
	if (cl==0) continue;	
	if (onlyused && (!cl->IsUsed(10))) continue;
	if (cl->IsUsed(11)) {
	  fNShared++;
	  continue;
	}
	Int_t   type   = cl->GetType();
	//if (point->fIsShared){
	//  fNShared++;
	//  continue;
	//}
	//if (pointm) 
	//  if (pointm->fIsShared) continue;
	//if (pointp) 
	//  if (pointp->fIsShared) continue;

	if (type<0) continue;
	//if (type>10) continue;       
	//if (point->GetErrY()==0) continue;
	//if (point->GetErrZ()==0) continue;

	//Float_t ddy = (point->GetY()-cl->GetY())/point->GetErrY();
	//Float_t ddz = (point->GetZ()-cl->GetZ())/point->GetErrZ();
	//if ((ddy*ddy+ddz*ddz)>10) continue; 


	//	if (point->GetCPoint().GetMax()<5) continue;
	if (cl->GetMax()<5) continue;
	Float_t angley = point->GetAngleY();
	Float_t anglez = point->GetAngleZ();

	Float_t rsigmay2 =  point->GetSigmaY();
	Float_t rsigmaz2 =  point->GetSigmaZ();
	/*
	Float_t ns = 1.;
	if (pointm){
	  rsigmay +=  pointm->GetTPoint().GetSigmaY();
	  rsigmaz +=  pointm->GetTPoint().GetSigmaZ();
	  ns+=1.;
	}
	if (pointp){
	  rsigmay +=  pointp->GetTPoint().GetSigmaY();
	  rsigmaz +=  pointp->GetTPoint().GetSigmaZ();
	  ns+=1.;
	}
	rsigmay/=ns;
	rsigmaz/=ns;
	*/

	Float_t rsigma = TMath::Sqrt(rsigmay2*rsigmaz2);

	Float_t ampc   = 0;     // normalization to the number of electrons
	if (i>64){
	  //	  ampc = 1.*point->GetCPoint().GetMax();
	  ampc = 1.*cl->GetMax();
	  //ampc = 1.*point->GetCPoint().GetQ();	  
	  //	  AliTPCClusterPoint & p = point->GetCPoint();
	  //	  Float_t dy = TMath::Abs(Int_t( TMath::Abs(p.GetY()/0.6)) - TMath::Abs(p.GetY()/0.6)+0.5);
	  // Float_t iz =  (250.0-TMath::Abs(p.GetZ())+0.11)/0.566;
	  //Float_t dz = 
	  //  TMath::Abs( Int_t(iz) - iz + 0.5);
	  //ampc *= 1.15*(1-0.3*dy);
	  //ampc *= 1.15*(1-0.3*dz);
	  //	  Float_t zfactor = (AliTPCReconstructor::GetCtgRange()-0.0004*TMath::Abs(point->GetCPoint().GetZ()));
	  //ampc               *=zfactor; 
	}
	else{ 
	  //ampc = 1.0*point->GetCPoint().GetMax(); 
	  ampc = 1.0*cl->GetMax(); 
	  //ampc = 1.0*point->GetCPoint().GetQ(); 
	  //AliTPCClusterPoint & p = point->GetCPoint();
	  // Float_t dy = TMath::Abs(Int_t( TMath::Abs(p.GetY()/0.4)) - TMath::Abs(p.GetY()/0.4)+0.5);
	  //Float_t iz =  (250.0-TMath::Abs(p.GetZ())+0.11)/0.566;
	  //Float_t dz = 
	  //  TMath::Abs( Int_t(iz) - iz + 0.5);

	  //ampc *= 1.15*(1-0.3*dy);
	  //ampc *= 1.15*(1-0.3*dz);
	  //	Float_t zfactor = (1.02-0.000*TMath::Abs(point->GetCPoint().GetZ()));
	  //ampc               *=zfactor; 

	}
	ampc *= 2.0;     // put mean value to channel 50
	//ampc *= 0.58;     // put mean value to channel 50
	Float_t w      =  1.;
	//	if (type>0)  w =  1./(type/2.-0.5); 
	//	Float_t z = TMath::Abs(cl->GetZ());
	if (i<64) {
	  ampc /= 0.6;
	  //ampc /= (1+0.0008*z);
	} else
	  if (i>128){
	    ampc /=1.5;
	    //ampc /= (1+0.0008*z);
	  }else{
	    //ampc /= (1+0.0008*z);
	  }
	
	if (type<0) {  //amp at the border - lower weight
	  // w*= 2.;
	  
	  continue;
	}
	if (rsigma>1.5) ampc/=1.3;  // if big backround
	amp[nc[of]]        = ampc;
	angular[nc[of]]    = TMath::Sqrt(1.+angley*angley+anglez*anglez);
	weight[nc[of]]     = w;
	nc[of]++;
      }
    
    TMath::Sort(nc[of],amp,index,kFALSE);
    Float_t sumamp=0;
    Float_t sumamp2=0;
    Float_t sumw=0;
    //meanlog = amp[index[Int_t(nc[of]*0.33)]];
    meanlog = 50;
    for (Int_t i=int(nc[of]*low+0.5);i<int(nc[of]*up+0.5);i++){
      Float_t ampl      = amp[index[i]]/angular[index[i]];
      ampl              = meanlog*TMath::Log(1.+ampl/meanlog);
      //
      sumw    += weight[index[i]]; 
      sumamp  += weight[index[i]]*ampl;
      sumamp2 += weight[index[i]]*ampl*ampl;
      norm[of]    += angular[index[i]]*weight[index[i]];
    }
    if (sumw<1){ 
      SetdEdx(0);  
    }
    else {
      norm[of] /= sumw;
      mean[of]  = sumamp/sumw;
      sigma[of] = sumamp2/sumw-mean[of]*mean[of];
      if (sigma[of]>0.1) 
	sigma[of] = TMath::Sqrt(sigma[of]);
      else
	sigma[of] = 1000;
      
    mean[of] = (TMath::Exp(mean[of]/meanlog)-1)*meanlog;
    //mean  *=(1-0.02*(sigma/(mean*0.17)-1.));
    //mean *=(1-0.1*(norm-1.));
    }
  }

  Float_t dedx =0;
  fSdEdx =0;
  fMAngular =0;
  //  mean[0]*= (1-0.05*(sigma[0]/(0.01+mean[1]*0.18)-1));
  //  mean[1]*= (1-0.05*(sigma[1]/(0.01+mean[0]*0.18)-1));

  
  //  dedx = (mean[0]* TMath::Sqrt((1.+nc[0]))+ mean[1]* TMath::Sqrt((1.+nc[1])) )/ 
  //  (  TMath::Sqrt((1.+nc[0]))+TMath::Sqrt((1.+nc[1])));

  Int_t norm2 = 0;
  Int_t norm3 = 0;
  for (Int_t i =0;i<4;i++){
    if (nc[i]>2&&nc[i]<1000){
      dedx      += mean[i] *nc[i];
      fSdEdx    += sigma[i]*(nc[i]-2);
      fMAngular += norm[i] *nc[i];    
      norm2     += nc[i];
      norm3     += nc[i]-2;
    }
    fDEDX[i]  = mean[i];             
    fSDEDX[i] = sigma[i];            
    fNCDEDX[i]= nc[i]; 
  }

  if (norm3>0){
    dedx   /=norm2;
    fSdEdx /=norm3;
    fMAngular/=norm2;
  }
  else{
    SetdEdx(0);
    return 0;
  }
  //  Float_t dedx1 =dedx;
  /*
  dedx =0;
  for (Int_t i =0;i<4;i++){
    if (nc[i]>2&&nc[i]<1000){
      mean[i]   = mean[i]*(1-0.12*(sigma[i]/(fSdEdx)-1.));
      dedx      += mean[i] *nc[i];
    }
    fDEDX[i]  = mean[i];                
  }
  dedx /= norm2;
  */

  
  SetdEdx(dedx);
  return dedx;
}
Double_t AliTPCseed::Bethe(Double_t bg){
  //
  // This is the Bethe-Bloch function normalised to 1 at the minimum
  //
  Double_t bg2=bg*bg;
  Double_t bethe;
  if (bg<3.5e1) 
    bethe=(1.+ bg2)/bg2*(log(5940*bg2) - bg2/(1.+ bg2));
  else // Density effect ( approximately :) 
    bethe=1.15*(1.+ bg2)/bg2*(log(3.5*5940*bg) - bg2/(1.+ bg2));
  return bethe/11.091;
}

void AliTPCseed::CookPID()
{
  //
  // cook PID information according dEdx
  //
  Double_t fRange = 10.;
  Double_t fRes   = 0.1;
  Double_t fMIP   = 47.;
  //
  Int_t ns=AliPID::kSPECIES;
  Double_t sumr =0;
  for (Int_t j=0; j<ns; j++) {
    Double_t mass=AliPID::ParticleMass(j);
    Double_t mom=GetP();
    Double_t dedx=fdEdx/fMIP;
    Double_t bethe=Bethe(mom/mass); 
    Double_t sigma=fRes*bethe;
    if (sigma>0.001){
      if (TMath::Abs(dedx-bethe) > fRange*sigma) {
	fTPCr[j]=TMath::Exp(-0.5*fRange*fRange)/sigma;
	sumr+=fTPCr[j];
	continue;
      }
      fTPCr[j]=TMath::Exp(-0.5*(dedx-bethe)*(dedx-bethe)/(sigma*sigma))/sigma;
      sumr+=fTPCr[j];
    }
    else{
      fTPCr[j]=1.;
      sumr+=fTPCr[j];
    }
  }
  for (Int_t j=0; j<ns; j++) {
    fTPCr[j]/=sumr;           //normalize
  }
}

/*
void AliTPCseed::CookdEdx2(Double_t low, Double_t up) {
  //-----------------------------------------------------------------
  // This funtion calculates dE/dX within the "low" and "up" cuts.
  //-----------------------------------------------------------------

  Float_t amp[200];
  Float_t angular[200];
  Float_t weight[200];
  Int_t index[200];
  Bool_t inlimit[200];
  for (Int_t i=0;i<200;i++) inlimit[i]=kFALSE;
  for (Int_t i=0;i<200;i++) amp[i]=10000;
  for (Int_t i=0;i<200;i++) angular[i]= 1;;
  

  //
  Float_t meanlog = 100.;
  Int_t indexde[4]={0,64,128,160};

  Float_t amean     =0;
  Float_t asigma    =0;
  Float_t anc       =0;
  Float_t anorm     =0;

  Float_t mean[4]  = {0,0,0,0};
  Float_t sigma[4] = {1000,1000,1000,1000};
  Int_t nc[4]      = {0,0,0,0};
  Float_t norm[4]    = {1000,1000,1000,1000};
  //
  //
  fNShared =0;

  //  for (Int_t of =0; of<3; of++){    
  //  for (Int_t i=indexde[of];i<indexde[of+1];i++)
  for (Int_t i =0; i<160;i++)
    {
	AliTPCTrackPoint * point = GetTrackPoint(i);
	if (point==0) continue;
	if (point->fIsShared){
	  fNShared++;	  
	  continue;
	}
	Int_t   type   = point->GetCPoint().GetType();
	if (type<0) continue;
	if (point->GetCPoint().GetMax()<5) continue;
	Float_t angley = point->GetTPoint().GetAngleY();
	Float_t anglez = point->GetTPoint().GetAngleZ();
	Float_t rsigmay =  point->GetCPoint().GetSigmaY();
	Float_t rsigmaz =  point->GetCPoint().GetSigmaZ();
	Float_t rsigma = TMath::Sqrt(rsigmay*rsigmaz);

	Float_t ampc   = 0;     // normalization to the number of electrons
	if (i>64){
	  ampc =  point->GetCPoint().GetMax();
	}
	else{ 
	  ampc = point->GetCPoint().GetMax(); 
	}
	ampc *= 2.0;     // put mean value to channel 50
	//	ampc *= 0.565;     // put mean value to channel 50

	Float_t w      =  1.;
	Float_t z = TMath::Abs(point->GetCPoint().GetZ());
	if (i<64) {
	  ampc /= 0.63;
	} else
	  if (i>128){
	    ampc /=1.51;
	  }	  	
	if (type<0) {  //amp at the border - lower weight	  	  
	  continue;
	}
	if (rsigma>1.5) ampc/=1.3;  // if big backround
	angular[i]    = TMath::Sqrt(1.+angley*angley+anglez*anglez);
	amp[i]        = ampc/angular[i];
	weight[i]     = w;
	anc++;
    }

  TMath::Sort(159,amp,index,kFALSE);
  for (Int_t i=int(anc*low+0.5);i<int(anc*up+0.5);i++){      
    inlimit[index[i]] = kTRUE;  // take all clusters
  }
  
  //  meanlog = amp[index[Int_t(anc*0.3)]];
  meanlog =10000.;
  for (Int_t of =0; of<3; of++){    
    Float_t sumamp=0;
    Float_t sumamp2=0;
    Float_t sumw=0;    
   for (Int_t i=indexde[of];i<indexde[of+1];i++)
      {
	if (inlimit[i]==kFALSE) continue;
	Float_t ampl      = amp[i];
	///angular[i];
	ampl              = meanlog*TMath::Log(1.+ampl/meanlog);
	//
	sumw    += weight[i]; 
	sumamp  += weight[i]*ampl;
	sumamp2 += weight[i]*ampl*ampl;
	norm[of]    += angular[i]*weight[i];
	nc[of]++;
      }
   if (sumw<1){ 
     SetdEdx(0);  
   }
   else {
     norm[of] /= sumw;
     mean[of]  = sumamp/sumw;
     sigma[of] = sumamp2/sumw-mean[of]*mean[of];
     if (sigma[of]>0.1) 
       sigma[of] = TMath::Sqrt(sigma[of]);
     else
       sigma[of] = 1000;      
     mean[of] = (TMath::Exp(mean[of]/meanlog)-1)*meanlog;
   }
  }
    
  Float_t dedx =0;
  fSdEdx =0;
  fMAngular =0;
  //
  Int_t norm2 = 0;
  Int_t norm3 = 0;
  Float_t www[3] = {12.,14.,17.};
  //Float_t www[3] = {1.,1.,1.};

  for (Int_t i =0;i<3;i++){
    if (nc[i]>2&&nc[i]<1000){
      dedx      += mean[i] *nc[i]*www[i]/sigma[i];
      fSdEdx    += sigma[i]*(nc[i]-2)*www[i]/sigma[i];
      fMAngular += norm[i] *nc[i];    
      norm2     += nc[i]*www[i]/sigma[i];
      norm3     += (nc[i]-2)*www[i]/sigma[i];
    }
    fDEDX[i]  = mean[i];             
    fSDEDX[i] = sigma[i];            
    fNCDEDX[i]= nc[i]; 
  }

  if (norm3>0){
    dedx   /=norm2;
    fSdEdx /=norm3;
    fMAngular/=norm2;
  }
  else{
    SetdEdx(0);
    return;
  }
  //  Float_t dedx1 =dedx;
  
  dedx =0;
  Float_t norm4 = 0;
  for (Int_t i =0;i<3;i++){
    if (nc[i]>2&&nc[i]<1000&&sigma[i]>3){
      //mean[i]   = mean[i]*(1+0.08*(sigma[i]/(fSdEdx)-1.));
      dedx      += mean[i] *(nc[i])/(sigma[i]);
      norm4     += (nc[i])/(sigma[i]);
    }
    fDEDX[i]  = mean[i];                
  }
  if (norm4>0) dedx /= norm4;
  

  
  SetdEdx(dedx);
    
  //mi deDX

}
*/
Double_t AliTPCseed::GetYat(Double_t xk) const {
//-----------------------------------------------------------------
// This function calculates the Y-coordinate of a track at the plane x=xk.
//-----------------------------------------------------------------
  if (TMath::Abs(GetSnp())>AliTPCReconstructor::GetMaxSnpTrack()) return 0.; //patch 01 jan 06
    Double_t c1=GetSnp(), r1=TMath::Sqrt(1.- c1*c1);
    Double_t c2=c1+GetC()*(xk-GetX());
    if (TMath::Abs(c2)>AliTPCReconstructor::GetMaxSnpTrack()) return 0;
    Double_t r2=TMath::Sqrt(1.- c2*c2);
    return GetY() + (xk-GetX())*(c1+c2)/(r1+r2);
}

void AliTPCseed::SetClusterMapBit(int ibit, Bool_t state)
{
  fClusterMap[ibit] = state;
}
Bool_t AliTPCseed::GetClusterMapBit(int ibit)
{
  return fClusterMap[ibit];
}
void AliTPCseed::SetSharedMapBit(int ibit, Bool_t state)
{
  fSharedMap[ibit] = state;
}
Bool_t AliTPCseed::GetSharedMapBit(int ibit)
{
  return fSharedMap[ibit];
}





Float_t  AliTPCseed::CookdEdxNorm(Double_t low, Double_t up, Int_t type, Int_t i1, Int_t i2, AliTPCCalPad * gainMap){
 
  //
  // calculates dedx using the cluster
  // low    -  up specify trunc mean range  - default form 0-0.7
  // type   -  1 - max charge  or 0- total charge in cluster 
  //           //2- max no corr 3- total+ correction
  // i1-i2  -  the pad-row range used for calculation
  //
  // normalization parametrization taken from AliTPCClusterParam
  //
  AliTPCClusterParam * parcl = AliTPCClusterParam::Instance();
  if (!parcl) return 0;
  Float_t amp[160];
  Int_t   indexes[160];
  Int_t   ncl=0;
  //
  //
  const Float_t ktany = TMath::Tan(TMath::DegToRad()*10);
  const Float_t kedgey =4.;
  //
  //
  for (Int_t irow=i1; irow<i2; irow++){
    AliTPCclusterMI* cluster = GetClusterPointer(irow);
    if (!cluster) continue;
    if (TMath::Abs(cluster->GetY())>cluster->GetX()*ktany-kedgey) continue; // edge cluster
    Float_t charge= (type%2)? cluster->GetMax():cluster->GetQ();
    if (gainMap) {      
      Float_t factor = 1;      
      AliTPCCalROC * roc = gainMap->GetCalROC(cluster->GetDetector());
      if (irow < 63) { // IROC
	factor = roc->GetValue(irow, TMath::Nint(cluster->GetPad()))*1.55;
      } else {         // OROC
	factor = roc->GetValue(irow - 63, TMath::Nint(cluster->GetPad()));
      }
      if (factor>0.5) charge/=factor;
    }
    
    //do normalization
    Float_t corr=1;
    Int_t  ipad= 0;
    if (irow>62) ipad=1;
    if (irow>127) ipad=2;    
    if (type<=1){
      //	
      AliTPCTrackerPoint * point = GetTrackPoint(irow);
      Float_t              ty = TMath::Abs(point->GetAngleY());
      Float_t              tz = TMath::Abs(point->GetAngleZ());
      
      Float_t dr    = (250.-TMath::Abs(cluster->GetZ()))/250.;
      corr  = parcl->Qnorm(ipad,type,dr,ty,tz);
    }
    amp[ncl]=charge/corr;
    
    amp[ncl] *= 2.0;     // put mean value to channel 50
    if (ipad==0) {
      amp[ncl] /= 0.65; // this we will take form OCDB
    } else
      if (ipad==2){
	amp[ncl] /=1.57;
      }else{
      }      
    ncl++;
  }

  if (type>3) return ncl; 
  TMath::Sort(ncl,amp, indexes, kFALSE);

  if (ncl<10) return 0;
  
  Float_t suma=0;
  Float_t sumn=0;
  Int_t icl0=TMath::Nint(ncl*low);
  Int_t icl1=TMath::Nint(ncl*up);
  for (Int_t icl=icl0; icl<icl1;icl++){
    suma+=amp[indexes[icl]];
    sumn++;
  }
  return suma/sumn;

}

Double_t AliTPCseed::BetheMass(Double_t mass){
  //
  // return bethe-bloch
  //
  Float_t bg= P()/mass; 
  const Double_t kp1=0.76176e-1;
  const Double_t kp2=10.632;
  const Double_t kp3=0.13279e-4;
  const Double_t kp4=1.8631;
  const Double_t kp5=1.9479;

  Double_t dbg = (Double_t) bg;

  Double_t beta = dbg/TMath::Sqrt(1.+dbg*dbg);

  Double_t aa = TMath::Power(beta,kp4);
  Double_t bb = TMath::Power(1./dbg,kp5);

  bb=TMath::Log(kp3+bb);
  
  return ((Float_t)((kp2-aa-bb)*kp1/aa));
}


Float_t  AliTPCseed::CookShape(Int_t type){
  //
  //
  //
 //-----------------------------------------------------------------
  // This funtion calculates dE/dX within the "low" and "up" cuts.
  //-----------------------------------------------------------------
  Float_t means=0;
  Float_t meanc=0;
  for (Int_t i =0; i<160;i++)    {
    AliTPCTrackerPoint * point = GetTrackPoint(i);
    if (point==0) continue;

    AliTPCclusterMI * cl = fClusterPointer[i];
    if (cl==0) continue;	
    
    Float_t rsigmay =  TMath::Sqrt(point->GetSigmaY());
    Float_t rsigmaz =  TMath::Sqrt(point->GetSigmaZ());
    Float_t rsigma =   (rsigmay+rsigmaz)*0.5;
    if (type==0) means+=rsigma;
    if (type==1) means+=rsigmay;
    if (type==2) means+=rsigmaz;
    meanc++;
  }
  Float_t mean = (meanc>0)? means/meanc:0;
  return mean;
}